BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1369 (PAB1369) DE:TETRACENOMYCIN POLYKETIDE SYNTHESIS
PROTEIN related
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75064 tetracenomycin polyketide synthesis protein related ...   238  2e-62
pir||E71167 hypothetical protein PH0537 - Pyrococcus horikoshii ...   201  2e-51

>pir||H75064 tetracenomycin polyketide synthesis protein related PAB1369 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458926|emb|CAB50413.1| (AJ248287) TETRACENOMYCIN
           POLYKETIDE SYNTHESIS PROTEIN related [Pyrococcus abyssi]
           Length = 112
           
 Score =  238 bits (600), Expect = 2e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MKGEIKEGIDRGSYVKFPIFEGELPEGSYVQVVEIKPRSKVGKHYHKFQYEVFYIIKGNA 60
           MKGEIKEGIDRGSYVKFPIFEGELPEGSYVQVVEIKPRSKVGKHYHKFQYEVFYIIKGNA
Sbjct: 1   MKGEIKEGIDRGSYVKFPIFEGELPEGSYVQVVEIKPRSKVGKHYHKFQYEVFYIIKGNA 60

Query: 61  RLGIGGEEYDARPGDIFLVKPGTVHWVINDSEEPFKLLVVKLNFRGDDTVWL 112
           RLGIGGEEYDARPGDIFLVKPGTVHWVINDSEEPFKLLVVKLNFRGDDTVWL
Sbjct: 61  RLGIGGEEYDARPGDIFLVKPGTVHWVINDSEEPFKLLVVKLNFRGDDTVWL 112


>pir||E71167 hypothetical protein PH0537 - Pyrococcus horikoshii
           >gi|3256943|dbj|BAA29626.1| (AP000002) 112aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 112
           
 Score =  201 bits (507), Expect = 2e-51
 Identities = 90/112 (80%), Positives = 102/112 (90%)

Query: 1   MKGEIKEGIDRGSYVKFPIFEGELPEGSYVQVVEIKPRSKVGKHYHKFQYEVFYIIKGNA 60
           MKGEI + IDRGSYVK+P+FEGELPEGSY Q+VE+KP+SKVGKHYHKFQYE+FY+I G A
Sbjct: 1   MKGEINKSIDRGSYVKYPLFEGELPEGSYAQIVEVKPKSKVGKHYHKFQYELFYVIVGEA 60

Query: 61  RLGIGGEEYDARPGDIFLVKPGTVHWVINDSEEPFKLLVVKLNFRGDDTVWL 112
           +LGIG EEY ARPGDIFLVKPG VHWV NDSE+ FKLLV+KLNF+GDDTVWL
Sbjct: 61  KLGIGSEEYLARPGDIFLVKPGQVHWVENDSEDSFKLLVIKLNFKGDDTVWL 112


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.146    0.446 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47881946
Number of Sequences: 2977
Number of extensions: 1982787
Number of successful extensions: 3518
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3516
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 189,106,746
effective HSP length: 47
effective length of query: 65
effective length of database: 160,977,857
effective search space: 10463560705
effective search space used: 10463560705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)