BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1370 (PAB1370) DE:Hypothetical protein
(387 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 747 0.0
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 248 9e-65
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 228 7e-59
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 226 3e-58
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 222 4e-57
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 222 5e-57
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 219 3e-56
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 211 1e-53
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 208 1e-52
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 199 6e-50
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 191 9e-48
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 143 4e-33
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 129 5e-29
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 116 4e-25
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 98 1e-19
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 96 5e-19
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 96 5e-19
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 93 4e-18
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 88 1e-16
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 88 2e-16
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat... 74 3e-12
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus... 74 3e-12
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 747 bits (1908), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MDRLTVQVTFLTTGAVVNYRGGSLYFDERPKSKREDLYDREEELEELLTLIEERKPLIVL 60
MDRLTVQVTFLTTGAVVNYRGGSLYFDERPKSKREDLYDREEELEELLTLIEERKPLIVL
Sbjct: 1 MDRLTVQVTFLTTGAVVNYRGGSLYFDERPKSKREDLYDREEELEELLTLIEERKPLIVL 60
Query: 61 KGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKK 120
KGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKK
Sbjct: 61 KGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKK 120
Query: 121 VKDALKMVSGISVSGFSVSISWKNLETLYSLISALERENFVIALDEVQEARGLVGKELAS 180
VKDALKMVSGISVSGFSVSISWKNLETLYSLISALERENFVIALDEVQEARGLVGKELAS
Sbjct: 121 VKDALKMVSGISVSGFSVSISWKNLETLYSLISALERENFVIALDEVQEARGLVGKELAS 180
Query: 181 LIAHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLRE 240
LIAHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLRE
Sbjct: 181 LIAHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLRE 240
Query: 241 GFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSEL 300
GFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSEL
Sbjct: 241 GFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSEL 300
Query: 301 DKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASL 360
DKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASL
Sbjct: 301 DKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASL 360
Query: 361 IEKVVEGRNVRYRIVDPVLEFALRRRR 387
IEKVVEGRNVRYRIVDPVLEFALRRRR
Sbjct: 361 IEKVVEGRNVRYRIVDPVLEFALRRRR 387
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 248 bits (626), Expect = 9e-65
Identities = 146/370 (39%), Positives = 219/370 (58%), Gaps = 25/370 (6%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ F+ +PK++REDLY+REEEL E+ I++ PL++L GIRRLGK+SLL VALNE +
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 84 VIVDLRGVNPNSRRDLYLRFQS----ALNDYLLRNKPIA---KKVKDALKMVSGISVSGF 136
V +D R + Y +F S AL + +L+ +++KD LK + G+S+ G
Sbjct: 61 VKIDARKI--------YSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGV 112
Query: 137 SVSISWKNLETLYSLISALER--ENFVIALDEVQEARGLVGKELASLIAHFYDYGEVTFV 194
++ + +L ++ + E FVIA+DE Q R K + D G ++F+
Sbjct: 113 NLELRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFI 172
Query: 195 LTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEIL 254
LTGSEVGLL DFL I +P +PL+GRA EI L RF R QS++FLR+GF +V V +E L
Sbjct: 173 LTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEEL 232
Query: 255 KLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKRY 314
+ V+ LDGIVGWL +G + R+ L+++ ++A L+L+E K + RY
Sbjct: 233 EEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKE----LSPRY 288
Query: 315 LIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYRI 374
+ +KA+ASGK W EIKE +E +E + I D + +LN+L++ +EK +G Y I
Sbjct: 289 ELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKG----YFI 344
Query: 375 VDPVLEFALR 384
DP++E A R
Sbjct: 345 PDPLVELAFR 354
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 228 bits (576), Expect = 7e-59
Identities = 146/377 (38%), Positives = 220/377 (57%), Gaps = 38/377 (10%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ F PK+KRE+L+DRE+ELEEL IE + LI+L G+RRLGK+SLL VAL E P
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 84 VIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIA------KKVKDALKMVSGISVSGFS 137
+ VD+R Y F S++N Y++ ++ ++ K+ L+ V GIS+SG
Sbjct: 61 IKVDVRKT--------YSEF-SSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVR 111
Query: 138 VSISWKNLETLYSLISALEREN--------FVIALDEVQEARGLVGKELASLIAHFYD-Y 188
+ +S ++ +S++ LE N +IA DE Q R ++A+ D
Sbjct: 112 IDVSPRD----FSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNL 167
Query: 189 GEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFY 248
+TF+LTGSEVGLL+DFL + P APL+GR H+I L++F E S EFL +GF ++RF
Sbjct: 168 DNLTFILTGSEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFK 227
Query: 249 VNDEILKLAVERLDGIVGWLVKFGVLSL-RSGASREVLERVLKEASALVLSELDKFLDKR 307
V++ ++ AVE LDGIVGWL +G + + R + +E +L+EA ++ +EL +
Sbjct: 228 VSELEIEKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRL---- 283
Query: 308 FIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEG 367
F RY +LKAI+ G + W +IK+ L ++ I+D + +L +L+K+ +EK
Sbjct: 284 FSYSPRYKGILKAISLGYSRWRDIKDYL-TLKLGYINDSNFSSLLENLVKSGYVEK---- 338
Query: 368 RNVRYRIVDPVLEFALR 384
RN RY+I DPVLE R
Sbjct: 339 RNGRYKISDPVLERVFR 355
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 226 bits (570), Expect = 3e-58
Identities = 148/367 (40%), Positives = 220/367 (59%), Gaps = 22/367 (5%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD RPK KRED++DRE+E++E+ + I + P+ ++ GIRR+GK+SLL+ LNE +
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDY-PITLILGIRRVGKSSLLKAVLNEME-GG 58
Query: 84 VIVDLRGVNPNS-----RRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSV 138
+ +D+R + S L + A+N +P + + +LK + GISVSG V
Sbjct: 59 IYIDVRKLYFESGGWITNVHLAKALEEAINSL---KEPFKRILISSLKSIEGISVSG--V 113
Query: 139 SISWKNLETLYSLISAL-ERENFVIALDEVQEAR--GLVG-KELASLIAHFYD-YGEVTF 193
+ + + +L SL+ L E+ ++A DE Q + G G KE +++A+ YD V+F
Sbjct: 114 KVRFTHRVSLSSLLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
Query: 194 VLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEI 253
V TGSEVGLL+DF+G+ + +P+YGR + E+ ++ F+RE SI FLR GF + V +E
Sbjct: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
Query: 254 LKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKR 313
+K AV+ L GI GWLV+FG ++ G+ E + VLK A LV EL++ L KR R
Sbjct: 234 IKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEE-LKKR---SPR 289
Query: 314 YLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
Y++VLKAI+ G W IKE +E R I + RLA IL +L S I V E RY+
Sbjct: 290 YVLVLKAISLGFNRWKSIKEFVEARSGR-IPNSRLASILENLQNMSWIRPVFEDNEKRYK 348
Query: 374 IVDPVLE 380
I+DPV+E
Sbjct: 349 ILDPVVE 355
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 222 bits (561), Expect = 4e-57
Identities = 143/370 (38%), Positives = 224/370 (59%), Gaps = 33/370 (8%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD +PK ++EDL+DREEEL EL++ I + P+ +L GIRR GK+S+++V+LNE
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSIT-KYPITLLLGIRRTGKSSIIKVSLNEIDAIG 59
Query: 84 VIVDLRGVNPNSR-RDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSISW 142
+ +D+R R + L+ Q N LR I++ G + +
Sbjct: 60 IYIDVRKAMKGGRVSEERLKLQLLGNIRRLR-----------------INIPGIKLEPTP 102
Query: 143 KNLETLYSLISALEREN---FVIALDEVQEAR---GLVGKELASLIAHFYDYGE-VTFVL 195
++ ++ L+++ R+ V+A DE Q R G++ +A+ YD E + F+
Sbjct: 103 LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLF 162
Query: 196 TGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEILK 255
+GSEVGLL+DFLG D+ +APL+GR ++EI L+ F R+ SIEFLREGFR+V V E ++
Sbjct: 163 SGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIE 222
Query: 256 LAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKRYL 315
+AV+ LDG+ GWLV++G + + RE LER L+ A +L+ SEL + L++R +RY+
Sbjct: 223 VAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSE-LERR---SERYV 278
Query: 316 IVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIE-KVVEGRNVRYRI 374
+LKAI+ G WS+IKE +E + I++ R + +L +L K S I ++ +GR V YRI
Sbjct: 279 AILKAISLGINRWSKIKEYVE-AKHGSITNARFSALLKNLEKMSWIRAELKDGRKV-YRI 336
Query: 375 VDPVLEFALR 384
VDPV+E +R
Sbjct: 337 VDPVVERVIR 346
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 222 bits (560), Expect = 5e-57
Identities = 135/369 (36%), Positives = 212/369 (56%), Gaps = 25/369 (6%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD PK R+D +DRE+E+E+L L R P+ ++ G+RR GK+S++++ +NE +P+
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLKGL---RAPITLVLGLRRTGKSSIIKIGINELNLPY 57
Query: 84 VIVDLRGV---NPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSI 140
+ +DLR N S +D L Q +N + R + K ALK + GI + G +
Sbjct: 58 IYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLK----ALKNIQGIVIMGNEIKF 113
Query: 141 SWKNLETLY--SLISALE---RENFVIALDEVQEARGLVGKELASLIAHFYD-YGEVTFV 194
+W + L +L+ + E ++N +I LDE QE L G L +A+ YD + F+
Sbjct: 114 NWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFI 173
Query: 195 LTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEIL 254
++GSE+GLLYD+L +++P +PL+GRAF +ELK F+RE++IEFLR GF++ D
Sbjct: 174 MSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--Y 231
Query: 255 KLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKRY 314
++ E++ GI GWL FG + L + + + L+ A L+L E + FL R IARKRY
Sbjct: 232 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRY 291
Query: 315 LIVLKAIAS-GKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
L +++ ++ GK WS++K LE E EISD + L L K S I K E +Y
Sbjct: 292 LNIMRTLSKCGK--WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGE----KYC 345
Query: 374 IVDPVLEFA 382
+P++ A
Sbjct: 346 PSEPLISLA 354
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 219 bits (553), Expect = 3e-56
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 33/372 (8%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD RPK++++DLYDRE EL+E ++ + +I+L GIRRLGK+SLL V L E+ P+
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 84 VIVDLRGVNPNSRRDLYLRFQSALNDYLLRN---------KPIAKKVKDALKMVSGISVS 134
VD+R LY + + D L R K + ++ L+ + GI +S
Sbjct: 61 SKVDVRS--------LYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKIS 112
Query: 135 GFSVSISWK-NLETLYSLISA-LEREN--FVIALDEVQEARGLVGKELASLIAHFYD-YG 189
G V + +L +++ I ERE VIA DE Q R L G LIA+ D
Sbjct: 113 GIHVEFERRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLR-LSGVRYDGLIAYAIDNLP 171
Query: 190 EVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYV 249
+ F+LTGSEVG+L+DFLG+DNP+ PL+GR + EI L RFTR++S +FLR GF ++ +
Sbjct: 172 NIIFILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANI 231
Query: 250 NDEILKLAVERLDGIVGWLVKFGVL-SLRSGASREVLERVLKEASALVLSELDKFLDKRF 308
DE ++ V R+DGIVGWL +G L ++ E L + +A AL+ EL L
Sbjct: 232 PDEEIEEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHIL---- 287
Query: 309 IARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGR 368
KRY +LKA+A G W IKE +E I+D + + +L +L+K +EK R
Sbjct: 288 AYSKRYKFILKAVALGNTRWKNIKEYVE-FRTGRINDAKFSNLLKNLVKYGYLEK----R 342
Query: 369 NVRYRIVDPVLE 380
+ Y I DP+++
Sbjct: 343 DGEYIIPDPLVK 354
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 211 bits (532), Expect = 1e-53
Identities = 140/368 (38%), Positives = 215/368 (58%), Gaps = 19/368 (5%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ F PK KRE+L+DRE+EL+E+ ++ + L++L G RR+GK+S+L VAL+E P
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 84 VIVDLRGV-NPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSISW 142
V VD+R V + S + Y+ + L+ L K + ++ + L+ V G+ +SG ++ I+
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLLSA-LRGRKRLFEEARMFLEKVKGVRISGVNIEINP 122
Query: 143 KNLETLYSLISAL-----ERENFVIALDEVQEARGLVGKELASLIAHFYDYGE-VTFVLT 196
K +L L+ L E+ +IA DE Q R +IA+ D E +TF+LT
Sbjct: 123 KGF-SLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFILT 181
Query: 197 GSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEILKL 256
GSEVGLLYDFL ++P+APL+GR H+I ++RF+ + S+EFL GFR+ V L+
Sbjct: 182 GSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELEK 241
Query: 257 AVERLDGIVGWLVKFGVLSLRSGASRE-VLERVLKEASALVLSELDKFLDKRFIARKRYL 315
AVE LDGI GWL +G + + + E + V+KEAS++V EL + F RY
Sbjct: 242 AVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRL----FSYSPRYR 297
Query: 316 IVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYRIV 375
+LKAIA G + W +IK+ L ++ I+D + +L++L+K +E+ R+ RY I
Sbjct: 298 FILKAIALGYSRWRDIKDYL-TLKVGPINDANFSKLLDNLVKHGYVER----RDGRYVIT 352
Query: 376 DPVLEFAL 383
DPVL L
Sbjct: 353 DPVLRKVL 360
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 208 bits (523), Expect = 1e-52
Identities = 143/374 (38%), Positives = 215/374 (57%), Gaps = 28/374 (7%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
L F PK+K+EDL+DRE EL++L L+E P++V+ G+RR+GK+SL++V LN++ + H
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETY-PIVVITGLRRVGKSSLVKVFLNKSDLLH 64
Query: 84 VIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSISWK 143
+ VD R + S ++ + L ++K+ + LK V GI+VSG S+ ++ K
Sbjct: 65 ITVDGRRLYETSGGNISSHHLTRFLGEELSRISKSQKLLNVLKRVRGITVSGTSIELNPK 124
Query: 144 NLETLYSLISALEREN---------FVIALDEVQEAR---GLVGKELASLIAHFYD-YGE 190
+SL LE+ N VI DE Q R G +L +L A+ YD +
Sbjct: 125 E----FSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFEN 180
Query: 191 VTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVN 250
V F+++GSEVG+L+DFL +++ +PL+GR + ++ FT +QS++FL EGFR+V +N
Sbjct: 181 VRFIISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKIN 240
Query: 251 DEILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIA 310
++ ++ V +DGIVG+LV FGV L E L+ V AL E+++ L KR
Sbjct: 241 FDVEEI-VREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEE-LRKR--- 295
Query: 311 RKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNV 370
+RY +L+ IA G TWS +K + R + I D RL +L +L K S IEK G
Sbjct: 296 SERYPFILRQIARGINTWSALK-NIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSG--- 351
Query: 371 RYRIVDPVLEFALR 384
YRIVDPV E LR
Sbjct: 352 -YRIVDPVFERILR 364
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 199 bits (500), Expect = 6e-50
Identities = 139/371 (37%), Positives = 212/371 (56%), Gaps = 32/371 (8%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD RPK++RED++DREEE +L +E PL +L GIRR+GK+SLLR LNE P
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNER--PG 57
Query: 84 VIVDLRGVNPN----SRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVS 139
+++D R + +R +L QS ++ + +K + K+ +++ ++
Sbjct: 58 ILIDCRELYAERGHITREELIKELQSTISPF--------QKFQSKFKI--SLNLKFLTLE 107
Query: 140 ISWKNLETLYSLISALERE--NFVIALDEVQEAR---GLVGKELASLIAHFYD-YGEVTF 193
+L ++ ++ L E F++A DE Q R GKEL +L A+ YD +
Sbjct: 108 PRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKI 167
Query: 194 VLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEI 253
+LTGSEVGLL+DFL I + +PLYGR E+ +K F ++ S+EFL+ GFR+V V +
Sbjct: 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227
Query: 254 LKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKR 313
++ AVE LDGI GWLV FGV LR+G ++R L+ A L++ EL++ + R
Sbjct: 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRR----SPR 283
Query: 314 YLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
Y+ +L+AIA G WS I++ L V+ +I + RL +L +L K + I VE N Y+
Sbjct: 284 YVDILRAIALGYNRWSLIRDYL-AVKGTKIPEPRLYALLENLKKMNWI---VEEDNT-YK 338
Query: 374 IVDPVLEFALR 384
I DPV+ LR
Sbjct: 339 IADPVVATVLR 349
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 191 bits (481), Expect = 9e-48
Identities = 138/370 (37%), Positives = 212/370 (57%), Gaps = 32/370 (8%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FD RPK +RED++DRE+E ++L IE+ P+ +L GIRR+GK+SLL+ L+E P
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDY-PMTLLLGIRRVGKSSLLKAYLSEN--PG 57
Query: 84 VIVDLRGVNPN----SRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVS 139
+++D R + +R DL + Q N I +K+ K+ + + +
Sbjct: 58 ILIDCRELYGERGHITRIDLIRKLQERGN--------IVQKLLSRFKV--SLDLKFLKIE 107
Query: 140 ISWKNLETLYSLISALERE--NFVIALDEVQEAR---GLVGKELASLIAHFYDYGE-VTF 193
+L ++ ++ + ++ FV+A DE Q R GK+L +L A+ YD E +
Sbjct: 108 PKEVSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKI 167
Query: 194 VLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEI 253
VLTGSEVGLL+DFLGI++ +PLYGR E+ ++ F S EFL+ GFR+V V DEI
Sbjct: 168 VLTGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEI 227
Query: 254 LKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKR 313
++ A+E LDGI GWLV FGV +R + ++R + A L+L EL + L+KR +R
Sbjct: 228 IEKAIEMLDGIPGWLVLFGVEYMREKDYEKAMKRTFEVAKGLILGEL-RELEKR---SRR 283
Query: 314 YLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYR 373
YL +L+ IA G WS I++ L V+ + RL +LN+L K I + VEG +Y
Sbjct: 284 YLEILRGIALGYNRWSLIRDYL-AVKGIPTPEPRLYELLNNLKKMGWINE-VEG---KYI 338
Query: 374 IVDPVLEFAL 383
+ DP+++ L
Sbjct: 339 LSDPLVKVTL 348
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 143 bits (356), Expect = 4e-33
Identities = 76/168 (45%), Positives = 106/168 (62%), Gaps = 12/168 (7%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ FDERPK REDL+DRE+E++E+++ I +PLI++ G+RR+GKTS+L+VALNE K+PH
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNIN--RPLILITGVRRIGKTSVLKVALNEIKIPH 58
Query: 84 VIVDLRGVNPN-SRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSISW 142
VI+D R + PN SR DLY F +A + L D L + G+S+ G SV + W
Sbjct: 59 VIIDCRNLRPNYSRGDLYSLFSNAFSSKL-------STFLDVLSKIRGVSILGNSVELKW 111
Query: 143 KNLE--TLYSLISALERENFVIALDEVQEARGLVGKELASLIAHFYDY 188
K E +L L L + VI +DE Q+ RG + E+ IAH YDY
Sbjct: 112 KGREYVSLSDLFDHLNEKRIVIGIDEAQKLRGPLSNEIKEAIAHAYDY 159
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 129 bits (321), Expect = 5e-29
Identities = 107/360 (29%), Positives = 179/360 (49%), Gaps = 24/360 (6%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
+ F+ RPK R+DLYDRE+E+E + I + + VL G+RR+GKTS++ VA+ E
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGEWIAVL-GMRRIGKTSVVNVAVKEIGAIK 59
Query: 84 VIVDLRGVNPNSRRD---------LYLRFQSALNDYLLRNKPIAKKVKDALKM--VSGIS 132
V ++L ++ + ++ L A+ +Y + K +AK + + L + +
Sbjct: 60 VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGK-VAKLLSNILGVEEIQTNK 118
Query: 133 VSGFSVSISWKNLETLYSLISALEREN---FVIALDEVQEARGLVGKELASLIAHFYDYG 189
V I ++ + + ++ R+N VI LDE QE + G + S+ YD
Sbjct: 119 VRAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNC 178
Query: 190 EVTFVL-TGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFY 248
+ T ++ TGS V L+ L P +GR +I L RF EQS EFL +GF +
Sbjct: 179 KNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIK 238
Query: 249 VNDEILKLAVERLDGIVGWLVKFG---VLSLRSGASREVLERVLKEASALVLSELDKFLD 305
V++ ++ AV+RLDGI GWL FG S + G ++ ++ ++++A V +E F+
Sbjct: 239 VDESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMG-TKPRIDEIIEKAINEVRNEARNFIF 297
Query: 306 KRFIARKRYLIVLKAI--ASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEK 363
+ RY V+ A+ GK EI + + I + R+ ILN L++ IE+
Sbjct: 298 ST-QSPLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFIER 356
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 116 bits (288), Expect = 4e-25
Identities = 70/192 (36%), Positives = 110/192 (56%), Gaps = 15/192 (7%)
Query: 200 VGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEILKLAVE 259
+GLL+DFLG+++P +PLYGR + EI L+RF +E+S +FLR+GF ++ V + +++ +
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 260 RLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRF----IARKRYL 315
+DGI GWL G + L+RV A + L+E++ + + I KRY
Sbjct: 61 MVDGIPGWLTLAG----NQYFNNRDLKRVKDLAINVALNEINSLISVKNNVSPIVAKRYR 116
Query: 316 IVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYRIV 375
VL+ IA G +WS+I ++ E IS L+ ILN+L K S+I++ YR +
Sbjct: 117 TVLRCIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSIIDE-------NYRFL 169
Query: 376 DPVLEFALRRRR 387
DPV + A R R
Sbjct: 170 DPVYKEASRMLR 181
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 98.3 bits (241), Expect = 1e-19
Identities = 101/379 (26%), Positives = 167/379 (43%), Gaps = 46/379 (12%)
Query: 25 YFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHV 84
+F RP + + L+D+ ++ + L R + +L G RR+GKTS++ V
Sbjct: 6 FFTTRPIMEEDCLWDKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNV---------- 55
Query: 85 IVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSG-----ISVSGFSVS 139
+ + + +Y F + + I K + +LK+++ IS+ G SV
Sbjct: 56 -ISQKFAKRRNHHYIYFNFSRFIGARAISIADIEPK-RTSLKLITTSKSYVISLKGISVE 113
Query: 140 ISWKNLETLYSLISALER------ENFVIALDEVQEARGLVGKELASLIAHFYD-YGEVT 192
+ ++E S S L R E ++ DE Q L + LI D Y ++
Sbjct: 114 VRKTSIEEFTSDFSTLVRILSQNSERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNIS 173
Query: 193 FVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDE 252
+ TGS GLL ++L P P + RA L R+ E+ +EFL++GF V +E
Sbjct: 174 MIFTGSMPGLLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNE 232
Query: 253 I-LKLAVERLDGIVGWLVKFGVLSL---RSGASRE-VLERVLKEASALVLSELDKFLDK- 306
+ L+ AV+ L GI G++ +G+ + RSG E L R L+E+ L E K L+
Sbjct: 233 LELERAVKELGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAF 292
Query: 307 -RFIARKRYLIVLKAIASGKAT---WSEIKEELERVEKREISDGRLAGILNSLLKASLIE 362
Y+ V+K +AS T +E+ + R KR I + ++E
Sbjct: 293 LNVYNSPIYVEVMKVLASSYPTALKGAEVYRRMNRAPKR---------IQHIYKYLDVLE 343
Query: 363 KV--VEGRNVRYRIVDPVL 379
KV + +Y I DP+L
Sbjct: 344 KVGFIRSEGGKYWIEDPIL 362
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 96.3 bits (236), Expect = 5e-19
Identities = 102/396 (25%), Positives = 185/396 (45%), Gaps = 71/396 (17%)
Query: 35 EDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPN 94
++ +DRE E+++L+ ++ R+P+ ++ G+RR+GKTS++ +L + P V + +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 95 SRRDLYLRFQSALNDYLLRN---------------KPIAKKVKDALKMVSGISVSGFSVS 139
DL + F S + L+ N K K++ D L+ + G F+++
Sbjct: 78 KSFDL-VSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNIN 136
Query: 140 ISWKNL-----------ETLYSLISALER-------ENFVIALDEVQEARGLVGKELASL 181
+ + E++ ++ ER V+A+DE Q + L + +
Sbjct: 137 LVEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLK-LASQNYPGI 195
Query: 182 I----AHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEF 237
+ + + +V++V++GS VGLL + + P Y + F I +K+F + S F
Sbjct: 196 FHLLRSKWQFHNKVSYVISGSSVGLLEKIFY--DKKEPFY-QFFFPIYVKQFDKNTSFNF 252
Query: 238 LREGFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLR-SGASREVLERVLKEAS--- 293
L++GFR D L LA+E LDGI WL FG+ SL+ + + E ++V+++ +
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312
Query: 294 ----ALVLSELDKFLDKRFIARKRYLIVLKAIASGKATWSEIKE-ELERVEKREISDGRL 348
++ E +K K I+LK +A K ++K EL R I++G
Sbjct: 313 PIVRGIIQEEYNKL-------GKNARIILKYLAE-KGGKGDLKGLELSRA---SINEG-- 359
Query: 349 AGILNSLLKASLIEKVVEGRNVRYRIVDPVLEFALR 384
L SLL + I K G +Y I+DPV+ L+
Sbjct: 360 ---LKSLLGSGYIVKEERG---KYAIIDPVIVKVLK 389
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 96.3 bits (236), Expect = 5e-19
Identities = 102/396 (25%), Positives = 185/396 (45%), Gaps = 71/396 (17%)
Query: 35 EDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPN 94
++ +DRE E+++L+ ++ R+P+ ++ G+RR+GKTS++ +L + P V + +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 95 SRRDLYLRFQSALNDYLLRN---------------KPIAKKVKDALKMVSGISVSGFSVS 139
DL + F S + L+ N K K++ D L+ + G F+++
Sbjct: 78 KSFDL-VSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFNIN 136
Query: 140 ISWKNL-----------ETLYSLISALER-------ENFVIALDEVQEARGLVGKELASL 181
+ + E++ ++ ER V+A+DE Q + L + +
Sbjct: 137 LVEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLK-LASQNYPGI 195
Query: 182 I----AHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEF 237
+ + + +V++V++GS VGLL + + P Y + F I +K+F + S F
Sbjct: 196 FHLLRSKWQFHNKVSYVISGSSVGLLEKIFY--DKKEPFY-QFFFPIYVKQFDKNTSFNF 252
Query: 238 LREGFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLR-SGASREVLERVLKEAS--- 293
L++GFR D L LA+E LDGI WL FG+ SL+ + + E ++V+++ +
Sbjct: 253 LKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFND 312
Query: 294 ----ALVLSELDKFLDKRFIARKRYLIVLKAIASGKATWSEIKE-ELERVEKREISDGRL 348
++ E +K K I+LK +A K ++K EL R I++G
Sbjct: 313 PIVRGIIQEEYNKL-------GKNARIILKYLAE-KGGKGDLKGLELSRA---SINEG-- 359
Query: 349 AGILNSLLKASLIEKVVEGRNVRYRIVDPVLEFALR 384
L SLL + I K G +Y I+DPV+ L+
Sbjct: 360 ---LKSLLGSGYIVKEERG---KYAIIDPVIVKVLK 389
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 93.2 bits (228), Expect = 4e-18
Identities = 107/383 (27%), Positives = 173/383 (44%), Gaps = 67/383 (17%)
Query: 38 YDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHVIVDLRGVNPNSRR 97
+ RE+E+E LL L + +P + L G RR+GKTSLL +L + P+ ++ +
Sbjct: 13 FGREKEIESLLGLYKLGQP-VGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71
Query: 98 DLYLRFQSAL------NDYLLRN-KPIAKKVKDALKMVSGISVSGFSVSISWKNLETLYS 150
+ F SA Y N K I +K K LK + + V +++ N+ LYS
Sbjct: 72 FDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQ---VKVTF-NIPELYS 127
Query: 151 LISA----------LERE------------------NFVIALDEVQEARGLVGKELASLI 182
I LE+E VIA+DE Q R + K+ I
Sbjct: 128 TIELTLDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLR--LAKQSIPGI 185
Query: 183 AHFYD-----YGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEF 237
H + VT+V++GS +G++ + L N P Y + F+ +++ F R+ SIEF
Sbjct: 186 FHIMRSKWQFHKNVTYVISGSLIGMMMELLSSRNQ--PFY-QFFYLMKVNPFDRKTSIEF 242
Query: 238 LREGFRQVRFYVNDEILKLAVERLDGIVGWLVKFGV-LSLRSGASREVLERVLKEASALV 296
LR+GF V E ++L V+++DG WL G+ + ++ EV+ ++K+ + +
Sbjct: 243 LRKGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVT 302
Query: 297 LSELDKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLL 356
E D KR R ++ A G + ++ +L V + L L+
Sbjct: 303 ALENDL---KRLSPTARAVLKNLASLGGAGSPKDLGLDLLTVTRG----------LKQLM 349
Query: 357 KASLIEKVVEGRNVRYRIVDPVL 379
L+EK EGR + YRIVDP+L
Sbjct: 350 NYGLVEK--EGRGI-YRIVDPIL 369
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 88.2 bits (215), Expect = 1e-16
Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 40/382 (10%)
Query: 25 YFDERPKSKREDLYDREEE--LEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVP 82
+F RP + E L+ ++ELL + + VL G RR+GKTS++ V +
Sbjct: 6 FFSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKF--- 61
Query: 83 HVIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSG-----ISVSGFS 137
+ +Y F + + I K + ++K+++ +S G S
Sbjct: 62 --------IRKRGHHYIYFNFSRFIGARAISISDIEPK-RTSMKLITTSKSYVLSFKGLS 112
Query: 138 VSISWKNLETLYSLISALER------ENFVIALDEVQEARGLVGKELASLIAHFYD-YGE 190
V I ++E S S L R + ++ DE Q L + LI D Y
Sbjct: 113 VEIRKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPN 172
Query: 191 VTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVN 250
++ + TGS G+L +L + + P + R+ L R++ ++ +EFL+ GFR + VN
Sbjct: 173 ISIIFTGSMPGILIRYLNSEASK-PNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVN 231
Query: 251 DEI-LKLAVERLDGIVGWLVKFGV----LSLRSGASREVLERVLKEASALVLSELDKFLD 305
DE+ L+ AV+ L GI G++ +G+ L A + L + L+E+ + L E + L+
Sbjct: 232 DELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLE 291
Query: 306 K--RFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEK 363
+ Y+ VL+ +A + E + ++K ++ R+ I L +EK
Sbjct: 292 AFINVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYL---DTLEK 348
Query: 364 V--VEGRNVRYRIVDPVLEFAL 383
V + RY I DP+L +
Sbjct: 349 VGFIRSDGKRYWIEDPLLRIVV 370
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 87.8 bits (214), Expect = 2e-16
Identities = 94/345 (27%), Positives = 158/345 (45%), Gaps = 37/345 (10%)
Query: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
L+FD+RP++ E L+ REEE+E+L +E + VL G R +GKTSL NE +
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVL-GPRMVGKTSLALAGANEFAKEN 89
Query: 84 ----VIVDLRGVNPNSRRDLYLRFQSALNDYLLR-NKPIAKKVKDALKMVSGISVSGFSV 138
V+VDLR F+ A L R + I + + L +S +S G
Sbjct: 90 GYNVVLVDLRDTET---------FREATEKILGRLPRSILDSISEYLSSISEVSAKGAGA 140
Query: 139 SISWK---NLETLYSLISALER-ENFVIALDEVQEARGLVGKELASLIAHFYDYGEVTFV 194
++ K + +L AL + ++ ++ LDEVQ + V L +L A F + + +
Sbjct: 141 GLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQII 200
Query: 195 LTGSEVGL---LYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVND 251
TGS G+ L++ D YGR I L + + +FLR GF ++ +
Sbjct: 201 FTGSYSGVVRRLFEATYSDES----YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEE 256
Query: 252 EILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIAR 311
++ + L + GWL +GV + L+ ++EA SEL+ L+ R
Sbjct: 257 WEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKA 316
Query: 312 KRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLL 356
++ V++ +A G A+W ++ K IS+ L+ +L L+
Sbjct: 317 RK---VVRLLAFG-ASWGDL-------IKTGISEDALSRLLGILM 350
>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 360
Score = 73.7 bits (178), Expect = 3e-12
Identities = 98/401 (24%), Positives = 173/401 (42%), Gaps = 92/401 (22%)
Query: 29 RPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHVI--V 86
R ++ ++ +DRE+ + LL+ I R+P+ +L RR+GK+SLL + +++ +
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAIL-APRRMGKSSLLNYIKIKLGNEYIVAKI 66
Query: 87 DLRGVNPNSRRDLYLRFQSALNDYL--LRNKPIAKKVKDALKMVSGISVSGF-------- 136
L G+ +++ ++ L +K + + + +LKM + ++S
Sbjct: 67 SLEGI-------------TSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFL 113
Query: 137 ----SVSISWKNLETL---YSL---------------------ISALERENFVIALDEVQ 168
S+SI +NLE YSL I+ +N VI +DE Q
Sbjct: 114 GSIKSLSIRMQNLELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQ 173
Query: 169 EARGL---VGKELASLIAHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIE 225
+ R L K L + V +++GSE G++ + I + P Y + +IE
Sbjct: 174 KIRVLKQPFPKILELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYN--YFKIE 229
Query: 226 -LKRFTREQSIEFLREGFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLRSGASREV 284
LK F +E SI FL EG + E + E +GI WL G++ R
Sbjct: 230 RLKSFDKETSIRFLNEGLKG----KCKEYYEKVYELTEGIPAWLNLAGLIFERECN---- 281
Query: 285 LERVLKEASALVLSELDKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREIS 344
+E +L++ + + EL K L+ K + VLK +A G + EI
Sbjct: 282 IEAILEDPNVEI--ELKKDLEG---LTKNEIKVLKGLAKGN-------------KLSEIK 323
Query: 345 DGRLAGILNSLLKASLIEKVVEGRNVRYRIVDPVLEFALRR 385
+ ++ L L++K+ N Y+I+DP+L F L++
Sbjct: 324 VSNIYRVIKILKNRGLVDKI----NDEYKIIDPILSFYLKK 360
>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
>gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
[Sulfolobus solfataricus]
Length = 360
Score = 73.7 bits (178), Expect = 3e-12
Identities = 98/401 (24%), Positives = 173/401 (42%), Gaps = 92/401 (22%)
Query: 29 RPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPHVI--V 86
R ++ ++ +DRE+ + LL+ I R+P+ +L RR+GK+SLL + +++ +
Sbjct: 8 RELTEEDEFFDREDYVNVLLSYINRRQPVAIL-APRRMGKSSLLNYIKIKLGNEYIVAKI 66
Query: 87 DLRGVNPNSRRDLYLRFQSALNDYL--LRNKPIAKKVKDALKMVSGISVSGF-------- 136
L G+ +++ ++ L +K + + + +LKM + ++S
Sbjct: 67 SLEGI-------------TSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFL 113
Query: 137 ----SVSISWKNLETL---YSL---------------------ISALERENFVIALDEVQ 168
S+SI +NLE YSL I+ +N VI +DE Q
Sbjct: 114 GSIKSLSIRMQNLELYIDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQ 173
Query: 169 EARGL---VGKELASLIAHFYDYGEVTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIE 225
+ R L K L + V +++GSE G++ + I + P Y + +IE
Sbjct: 174 KIRVLKQPFPKILELTRKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYN--YFKIE 229
Query: 226 -LKRFTREQSIEFLREGFRQVRFYVNDEILKLAVERLDGIVGWLVKFGVLSLRSGASREV 284
LK F +E SI FL EG + E + E +GI WL G++ R
Sbjct: 230 RLKSFDKETSIRFLNEGLKG----KCKEYYEKVYELTEGIPAWLNLAGLIFERECN---- 281
Query: 285 LERVLKEASALVLSELDKFLDKRFIARKRYLIVLKAIASGKATWSEIKEELERVEKREIS 344
+E +L++ + + EL K L+ K + VLK +A G + EI
Sbjct: 282 IEAILEDPNVEI--ELKKDLEG---LTKNEIKVLKGLAKGN-------------KLSEIK 323
Query: 345 DGRLAGILNSLLKASLIEKVVEGRNVRYRIVDPVLEFALRR 385
+ ++ L L++K+ N Y+I+DP+L F L++
Sbjct: 324 VSNIYRVIKILKNRGLVDKI----NDEYKIIDPILSFYLKK 360
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127865657
Number of Sequences: 2977
Number of extensions: 5150987
Number of successful extensions: 16987
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16906
Number of HSP's gapped (non-prelim): 23
length of query: 387
length of database: 189,106,746
effective HSP length: 58
effective length of query: 329
effective length of database: 154,394,500
effective search space: 50795790500
effective search space used: 50795790500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)