BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1371 (PAB1371) DE:Hypothetical protein
(472 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 959 0.0
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 289 5e-77
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 287 2e-76
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 277 3e-73
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 267 2e-70
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 262 6e-69
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 261 1e-68
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 257 2e-67
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 257 2e-67
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 230 2e-59
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 215 7e-55
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 210 2e-53
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 182 6e-45
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 179 5e-44
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 163 4e-39
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 147 3e-34
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 143 6e-33
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 138 1e-31
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 122 1e-26
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 110 4e-23
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 87 4e-16
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 79 9e-14
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 78 2e-13
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 77 4e-13
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 959 bits (2452), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV
Sbjct: 1 MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
Query: 61 GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN
Sbjct: 61 GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP
Sbjct: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
Query: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE
Sbjct: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
Query: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK
Sbjct: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
Query: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE
Sbjct: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
Query: 361 YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL 420
YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL
Sbjct: 361 YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL 420
Query: 421 RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL 472
RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL
Sbjct: 421 RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL 472
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 289 bits (732), Expect = 5e-77
Identities = 181/465 (38%), Positives = 269/465 (56%), Gaps = 20/465 (4%)
Query: 9 MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
+F DR++EL L E + F+V+YGRRRVGKTAL+ EFL+ G+YL E E
Sbjct: 38 LFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARETSEIEN 97
Query: 69 LEDFT-REVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPS 127
LE F+ R E S+L + SL+ FE+L + +I +DEF +
Sbjct: 98 LERFSLRLAEYFNDSFLK---KNPLRSLDAFFEYL-STKAEKPFIIAIDEFPYLVKGNKA 153
Query: 128 LFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAY 187
L S LQ+ W++K + LI GS V M +R+ + K PL+GR +KLKP DF+ A
Sbjct: 154 LPSILQEYWEMKLSKKKIFLIVSGSSVSMTERL-LGYKSPLYGRRTAQLKLKPLDFFNAR 212
Query: 188 NFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLK 246
F+ DFV ++ LGG P YLL + + ++E +F S L + +L+
Sbjct: 213 EFLPKYSLEDFVRVYGILGGTPAYLL---EFSDEKSLEENLKSYFRVDSLLYGDALFILR 269
Query: 247 LEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATE 306
E R+YF+I+EA++ G T EI ++TGL+ TVGKYLS L + + + +EVP T
Sbjct: 270 EELDE-PRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLID-LDLVRREVPITA 327
Query: 307 DPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGR 366
RK+RK Y+I D +F FWFR+VY N +E G +++ + ++ + G+ +E + +
Sbjct: 328 S-RKSRKGRYYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAK 386
Query: 367 EFIRRID----LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLL 420
EF+ R++ L F RVGRWW+K EEID++A N E+KV EVKW DLSK A+ +L
Sbjct: 387 EFLLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGIL 446
Query: 421 RDLERKGELVPL-RGERVYGLISREVEGKEELRNCGYLVFDLNDI 464
+DL+RK +LV L + YGL+++ V GK+E++ G+L +DL DI
Sbjct: 447 KDLKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDI 491
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 287 bits (726), Expect = 2e-76
Identities = 176/464 (37%), Positives = 271/464 (57%), Gaps = 22/464 (4%)
Query: 9 MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
MF DREREL+ L Y G F+V+YGRRRVGKTAL+ EF+ GIYL E
Sbjct: 1 MFLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLEN 60
Query: 69 LEDFTREVEMALSSYLPP--YVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKP 126
L+ F+ LS Y R F + + E+L + + +LV+++DEF
Sbjct: 61 LKRFSDR----LSEYFGDDFLKRNPFQNWDAFLEYLNQKATE-RLVVVIDEFPYLVKGDR 115
Query: 127 SLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRA 186
SL S LQ+ WDLK + + LI GS + MM+++ + K P++GR I LKP DF A
Sbjct: 116 SLPSILQEYWDLKLSNGRIFLIICGSSISMMEKL-LGYKSPIYGRRTGQINLKPVDFLHA 174
Query: 187 YNFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVL 245
F+ DF++ + LGG P +LL + + TI+ + S L ++ F VL
Sbjct: 175 REFLPGYSLEDFIKAYGILGGSPAHLL---EFDDSKTIKENLLEYLRSDSLLYQDAFFVL 231
Query: 246 KLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPAT 305
+ E R+YF+I+EAV+ G + EI ++TGL TV KYLS L +++ +E+P T
Sbjct: 232 REEL-EEPRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLI-ELDFVKREIPIT 289
Query: 306 EDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIG 365
RK+R+ Y+I+D +F FWFR+++ NI ++E ++L + ++ P ++G +E +
Sbjct: 290 AS-RKSRRGRYYIKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVA 348
Query: 366 REFIRRID--LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLLR 421
EF+ I L F PL++GRWWHK EEID++A+N EEK L EVKW L+K A ++L+
Sbjct: 349 IEFLPLISNKLPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILK 408
Query: 422 DLERKGELVPLR-GERVYGLISREVEGKEELRNCGYLVFDLNDI 464
DL RK +++ ++ E+ +G+I++ V+ KE+++ G L++DL DI
Sbjct: 409 DLNRKSKILKMKEWEQYHGIIAKRVKDKEKIK--GGLIWDLEDI 450
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 277 bits (700), Expect = 3e-73
Identities = 171/463 (36%), Positives = 266/463 (56%), Gaps = 18/463 (3%)
Query: 9 MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
MF RE EL L E + F+V+YGRRR+GKTAL+ E ++ GIYL E EA
Sbjct: 1 MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60
Query: 69 LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
L+ F+ V L + F + + FE+L+ S + ++++ +DEF +L
Sbjct: 61 LKRFSERVAKYFDGDL--LRKNPFQNWDAFFEYLYQKSGE-RVIVAIDEFPYLLKGNKAL 117
Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
S LQ+ WDLK S + LI GS + MM+++ + K P++GR +KLKP DF+ A
Sbjct: 118 ASILQEYWDLKLSKSKIFLIICGSSITMMEKL-LGYKSPIYGRRTCQLKLKPMDFFSARK 176
Query: 189 FV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKL 247
F+ P D + + LGG P YLL + + +IE +F S L ++ +L+
Sbjct: 177 FLPRYPIEDSLRAYGILGGTPAYLL---KFDDKKSIEENLLSYFRPDSFLYQDALFILRE 233
Query: 248 EFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATED 307
E R+YF+I+EA++ G + EI ++T L TVGKYLS L + + + +EVP TE
Sbjct: 234 ELNE-PRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLID-LDLVRREVPITES 291
Query: 308 PRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE 367
K+RK Y+I D +F FWFR+V N+ +E G+ ++ + E+F ++ +E + R+
Sbjct: 292 -WKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQ 350
Query: 368 FIRRID----LGFSPLRVGRWWHKGEEIDVIAYNEEK--VALFEVKWSDLSKARAKRLLR 421
F+ R++ L S +++GRWWHKGEEID++A NE K V EV+W +LS+ ++ +R
Sbjct: 351 FLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIR 410
Query: 422 DLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
L +K +LV L + YGL+ + + GKE+LR+ G+LV+DL D
Sbjct: 411 KLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKD 453
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 267 bits (676), Expect = 2e-70
Identities = 175/469 (37%), Positives = 273/469 (57%), Gaps = 30/469 (6%)
Query: 1 MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
M+I ++ F +R+REL+ L ++Y + G++ VV+YGRRRVGKTAL+R+FL+ K GIY
Sbjct: 1 MIIIIMIRKFVNRKRELETLEKLYEK-GANLVVIYGRRRVGKTALLRKFLEEKRGIYFLC 59
Query: 61 GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
+ L+ F++E+ + L F E+ FEFL S+ KLV+++DEF
Sbjct: 60 SRRGYEKDLKRFSQELSKFFG------IPLSFEDFEDAFEFL---SKQGKLVVVIDEFPY 110
Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
+ S Q++ DL E S V+LI GS +GMM++ + K PL+GR +K+KP
Sbjct: 111 LIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKP 170
Query: 181 FDFWRAYNFVNIPARDF---VEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPL 237
F F ++ V RDF V ++ G+P+Y+ + R G+ E +R+ FFD S L
Sbjct: 171 FRF---FDMVEWYGRDFEKLVRLYGVTWGVPRYMEFFR---EGSDEEIIRN-FFDPSSFL 223
Query: 238 REEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEY 297
E +L +E R Y I+EA++LG EI++ + + + YL L
Sbjct: 224 FNEA-KLLLMEELRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTL-QELGI 281
Query: 298 LGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFV 357
+ + P T+ R ++ Y I DE+F F++RFV + +E + D R+NF +++
Sbjct: 282 VKRITPITK--RNAKRGVYVIEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYL 339
Query: 358 GKEYERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSKAR 415
G+ +E++ +EF+ + +G P ++G+WW+KGEEID++A NE EK ALF EVKW L +
Sbjct: 340 GETFEKVSKEFL--LAIGDYP-KIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKERE 396
Query: 416 AKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
AKR+L+ LE+K L+ L G + YG+I+R VEGKE LR+ G+LV+DL D
Sbjct: 397 AKRILKRLEKKSMLINLDGWIKDYGVIARRVEGKESLRDEGWLVWDLED 445
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 262 bits (663), Expect = 6e-69
Identities = 165/470 (35%), Positives = 265/470 (56%), Gaps = 25/470 (5%)
Query: 1 MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
M I ++ F +R+RELK L + +G VVYGRRRVGKTAL+R+FL+ K GIY
Sbjct: 1 MFIIIMIRKFVNRKRELKVLERAWE-EGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC 59
Query: 61 GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
++ L+ F++E+ SS++ VR F S ++ F+FL KL++I DEF
Sbjct: 60 SQRGYEKDLKRFSQEI----SSFIGAPVR--FESFKDAFKFLRGQG---KLLVIFDEFPY 110
Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
+ S Q++ D+ E S + +I GS VGMM+R + K PL+GR +K+KP
Sbjct: 111 LIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKP 170
Query: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
F F+ + + ++ G+PKY+ + + G+ E + + FF+ + L E
Sbjct: 171 FRFFDMVEWFGKDFERLLRLYGVTWGIPKYMEFFK---TGSDDEIINN-FFNPSAFLFNE 226
Query: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
+L +E R Y I+EA+++G EI+ G++ + YL L+N + +
Sbjct: 227 A-RLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSN-LGIVRR 284
Query: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
EVP TE RK ++ Y I DE+F F+ RFV + + ++ + D NF ++GK
Sbjct: 285 EVPITE--RKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKT 342
Query: 361 YERIGREFIRRID----LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKA 414
+E++ REF+ ++ L F + +G+WW + EEID++A N E+KV L EVKW +L +
Sbjct: 343 FEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEK 402
Query: 415 RAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
A+ +L+DLERKGELV L ++ YGLI++ ++ KE L++ G+L++DL D
Sbjct: 403 EARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKD 452
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 261 bits (661), Expect = 1e-68
Identities = 176/480 (36%), Positives = 265/480 (54%), Gaps = 36/480 (7%)
Query: 2 VIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVG 61
+I + F DREREL L E Y+ + +++YGRRR+GKT L+ F + K +Y
Sbjct: 3 IILMSIQKFVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLAS 62
Query: 62 EKDEALLLEDFTREVEMALSSYLPP--YVRLRFSSLEELFEFLFDFSRDI---KLVIILD 116
EK D RE++ + +L + R+ FS ++EL L +FS+ + ++V+I+D
Sbjct: 63 EKP----YRDNLRELQRMMGDFLGDRLFSRVEFSDIDEL---LIEFSKRVQGRRVVLIID 115
Query: 117 EFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWI 176
EF + S +Q+ WD++ S+++LI GS V M+ + K PL+GR
Sbjct: 116 EFPYLIEHYKPVLSLIQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQW 175
Query: 177 KLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIETLRSLFFDE 233
K+ FW F + + V+++ LGG+P YLL ++ N +E + S +
Sbjct: 176 KVGELPFWSLREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLS----K 231
Query: 234 LSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTN 293
+ L EE +LK E R +YF IL+A++ G EI + TGL V KYL+ L
Sbjct: 232 GAFLYEEAEILLKEEM-REPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVL-- 288
Query: 294 HYEYLG---KEVPATEDPRKT-RKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDL 349
E LG +EVP T ++ ++ Y I D + FWFR+V N YLE G ++
Sbjct: 289 --EKLGMVEREVPVTASRKEALKRGRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERS 346
Query: 350 RENFPAFVGKEYERIGRE---FIRRIDLGFSPLRVGRWWHKGEEIDVIAYN--EEKVALF 404
+E+F ++G +ER+ R+ F + D FS RVGRWW+K EEID++A N E+KV
Sbjct: 347 KEDFKEYMGGVFERLLRKPEVFTKLTDFRFS--RVGRWWYKNEEIDLVALNEREKKVLFI 404
Query: 405 EVKWSDLSKARAKRLLRDLERKGELVPL-RGERVYGLISREVEGKEELRNCGYLVFDLND 463
EVKW DLSK A+ +L+DLERK +LV L E+ YGL+++ +EGKE+LR YLV+DL D
Sbjct: 405 EVKWKDLSKREARGILKDLERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKD 464
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 257 bits (650), Expect = 2e-67
Identities = 165/464 (35%), Positives = 257/464 (54%), Gaps = 31/464 (6%)
Query: 12 DRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLED 71
+ E+ELK + E + + +V+YGRRRVGKT L+ E +KG +Y E D L
Sbjct: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDN---LRH 60
Query: 72 FTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSS 131
F E YVR + S+ + +II+DEF N P + S
Sbjct: 61 FRETAERVFPEV--KYVREDWESILHALK---------GKIIIIDEFPNLIKEDPKVVSL 109
Query: 132 LQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFV- 190
Q+ DL+ +SN +I +GS V ++ + +K PL+GR +KLKP +F+ F
Sbjct: 110 FQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFP 169
Query: 191 NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFG 250
+ VEI+ G+P Y++ ++ + E L LS ++E +LK EF
Sbjct: 170 EASWEELVEIYGFTDGIPYYIIQVKLPF----WEWLEKELLSPLSFFKDEVDFLLKYEFT 225
Query: 251 RYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRK 310
R Y ILEA++LG T KEI D TG++ + YL L + + +EVP TE P
Sbjct: 226 E-TRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLL-ETDLVVREVPITEKP-Y 282
Query: 311 TRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIR 370
+++ Y++ D F FWFR++Y N+ +EEG T + ++R ++ ++G +E++ R+F+
Sbjct: 283 SKRGRYYLADNFLAFWFRYIYPNLSRIEEG--TFSIEEIRGDYSQYLGWVFEKVARQFLL 340
Query: 371 RIDLGFSPLRVGRWWHKGEEIDVIAYNEE-KVALF-EVKWSDLSKARAKRLLRDLERKGE 428
++++ F+ ++GRWWHK +EID++A NE K LF EVKW L + A+++LR+LE+KG+
Sbjct: 341 KLNINFT--KIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGK 398
Query: 429 LVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND--IVYIPP 469
L L E+ YGLI+R +EGKE L+ GYLV+DL D +VY P
Sbjct: 399 LTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQP 442
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 257 bits (650), Expect = 2e-67
Identities = 168/464 (36%), Positives = 260/464 (55%), Gaps = 30/464 (6%)
Query: 10 FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLL 69
F DRE EL+ L + +S + +++YGRRR+GKT L+++FL GIYL E + +L
Sbjct: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESE--TVL 64
Query: 70 EDFTREVEMALSSYLPPYVRLR-FSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
EDF+ E + P+++ + F +L S + +LV+++DE Q +
Sbjct: 65 EDFS---ERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSE-RLVVVIDEVQYIAKSQKDF 120
Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
S+LQK WDL D+ ++LI GS V M+ I + K P++GR K++ DF+ A+
Sbjct: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGI-LSAKSPIYGRRTGAWKVEEMDFFNAWK 179
Query: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNT--IETLRSLFFDELSPLREEGFNVLK 246
F ++ A V I+S GG+P+YL YN N E LR L + + +E +LK
Sbjct: 180 FHDVDAETVVHIYSVFGGVPQYLA----DYNPNLDFWENLRELLLSKGAKYYDEPKYLLK 235
Query: 247 LEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATE 306
E R YFSIL A++LGY +I+DK ++ ++ KYL L + Y+ +E P
Sbjct: 236 QEL-RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL-SEMGYIEEETPVIG 293
Query: 307 DPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGR 366
R Y IRD F FWFRFVY +E G V+ +++ F ++GK +E I R
Sbjct: 294 KGR----TIYRIRDNLFAFWFRFVYPRRSEIEMG--FDVVEEIKGEFNDYLGKAFEGIAR 347
Query: 367 EFIRRID-LGFSPLR---VGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLL 420
+F+ R++ LG P R +GRWWH+GEE+D++A N E+K L V+W +L +R+L
Sbjct: 348 QFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRIL 407
Query: 421 RDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
DL RK EL+ L G E+ Y +++R+V+GKE+L + + ++DL D
Sbjct: 408 GDLRRKSELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRD 450
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 230 bits (581), Expect = 2e-59
Identities = 161/471 (34%), Positives = 246/471 (52%), Gaps = 50/471 (10%)
Query: 9 MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
MF DRE ELK LNE F+V+YGRRR+GKT L + ++ + IY E D
Sbjct: 1 MFVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDN--- 57
Query: 69 LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
L+ F R +S + P + E F FL D +II+DEF N P++
Sbjct: 58 LKHFKR-----YASKVEPTIEYAKEDWEAYFNFLKD------KIIIIDEFPNLIKENPNV 106
Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
S Q++ D+ +++ LI +GS + MM + K PL+GR +K+KP F
Sbjct: 107 LSLFQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKE 166
Query: 189 FV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDEL--------SPLRE 239
F + VEI+ G+P YL E ++ F+D L S LR
Sbjct: 167 FFPKAIWEELVEIYGFADGIPYYL------------EKVKLPFWDYLDKEIKRVDSFLRY 214
Query: 240 EGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLG 299
E ++K EF +Y ILEA++ G T EI + G K + YL L E++
Sbjct: 215 EVDFLMKYEF-EEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLI-EVEFIE 272
Query: 300 KEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGK 359
++ P TE K++K Y+I+D F F+FR+++ N+ +EEG + +++ ++ ++G
Sbjct: 273 RQTPITESV-KSKKGRYYIKDNFIAFYFRYIFPNLSAIEEGIFD--IEEIKADYNQYLGF 329
Query: 360 EYERIGREFIRRID----LGFSPLRVGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSK 413
+E++ +EF+ ++ L F L++GRWWH+GEEID+IA N+ +K ALF EVKW DL
Sbjct: 330 VFEKVAKEFLIELNKMNKLPFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKD 389
Query: 414 ARAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
K++ RDL RK +LV L E+ Y ++ +++E KE N L+FDL D
Sbjct: 390 RDVKKIYRDLYRKSKLVGLDDYEKYYAIVGKKIESKE---NGDCLLFDLED 437
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 215 bits (543), Expect = 7e-55
Identities = 158/468 (33%), Positives = 243/468 (51%), Gaps = 35/468 (7%)
Query: 10 FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGK-LGIYLFVGEKDEALL 68
F DRE ELK L + ++ S V++YGRRR GKT L+ EF +GK Y F+ + E +
Sbjct: 5 FVDREDELKALEDQWNST-PSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63
Query: 69 LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
R + L+ + + L F+ LF++L + K +IILDEF ++
Sbjct: 64 -----RRLREELAEHFNDELFLSFNDWYPLFKYLASKVTE-KTLIILDEFSYAIKSDRTI 117
Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
S+LQ+ WD V+L+ GS +GMM + PL+GR LKP + +
Sbjct: 118 VSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLK 177
Query: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGF-----N 243
F + +E++ +GG+P YL+ Y +T R F E + LR EGF
Sbjct: 178 FFD-SFEVGLEMYMLVGGIPAYLIIASRYE-----DTRR---FIEETFLRTEGFFYDEPY 228
Query: 244 VLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVP 303
+L R ++YFSIL A + G EI+ GL+ + YL L ++ +E+P
Sbjct: 229 ILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLV-RLGFIEREIP 287
Query: 304 ATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYER 363
R ++ Y ++D WF V N +E G I+ +D++E+ G +E
Sbjct: 288 IA---RNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFED 342
Query: 364 IGREFI----RRIDLGFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAK 417
+ REF+ RR L F R+GRWW+KGEEID++A NE +++ L EVKW +LSK AK
Sbjct: 343 VAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAK 402
Query: 418 RLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLNDI 464
+L+DL+RK +L+ L G + + L+++ V GK +LR G+ V+DL D+
Sbjct: 403 GILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDL 450
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 210 bits (530), Expect = 2e-53
Identities = 156/462 (33%), Positives = 239/462 (50%), Gaps = 34/462 (7%)
Query: 10 FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLL 69
F DRE E++ L + + SFVV+YGRRRVGKT L++EF K K + E + + +
Sbjct: 3 FIDRELEMEILEREWENR-PSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQM 61
Query: 70 EDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLF 129
++F + + L + R +L +L + D +I+LDEF + +
Sbjct: 62 KEFKKTMAEFLGDDFARKLETR--DWLDLLRYLAEKVDDC--LIVLDEFTYAIKSERKIL 117
Query: 130 SSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNF 189
S LQ+ WD + V+L+ GS +GMM + PL+GR + LKPFD+ A F
Sbjct: 118 SDLQRTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKF 177
Query: 190 VNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIET-LRSLFFDELSPLREEGFNVLKLE 248
+ P + ++ +GG+P YL Y NT+E +R F + +E + +L E
Sbjct: 178 FSDPEFG-IRVYMLVGGIPSYLKLAGRY---NTVEEFIREEFLSDYGFFYDEPYVLLGEE 233
Query: 249 FGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDP 308
R ++YFSIL A++ G + I++ GL + +V Y+ L + +E P
Sbjct: 234 L-RELKTYFSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVR-LGLVERESPILG-- 289
Query: 309 RKTRKVS-YFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE 367
+RKVS Y I+D WF Y + + G T L+ L + + +E + +E
Sbjct: 290 --SRKVSLYRIKDPMLLTWFTLTYPQMAEISSG--TAKLDSLYKVYSI----RFEELAKE 341
Query: 368 FIRRIDLGFSPLR---VGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLE 424
F+ F P+ +GRWW++GEEID++A ++K L EVKW DLSK A R+LR+LE
Sbjct: 342 FLTL----FRPIEFETLGRWWYRGEEIDIVALRKDKTTLIEVKWKDLSKRSALRVLRELE 397
Query: 425 RKGE-LVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIV 465
K E L P+ GLI++ V GKE+LR GYLV+DL DI+
Sbjct: 398 EKSEKLHPIEN---IGLIAKSVRGKEKLREEGYLVWDLEDII 436
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 182 bits (458), Expect = 6e-45
Identities = 112/316 (35%), Positives = 181/316 (56%), Gaps = 17/316 (5%)
Query: 156 MMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL 214
M+ + K PL+GR +KL+P +F+ F + + VEI+ G+P Y++ +
Sbjct: 1 MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60
Query: 215 RHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEIS 274
+ + E L + +S ++E +L+ EF +Y ILEA++LG T KEI
Sbjct: 61 KPPF----WELLEEELKNPISFFKDEVDFLLRYEFSEV-TTYKRILEAIALGKTTLKEIK 115
Query: 275 DKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNI 334
D TGL+ + YL L + + +EVP TE + ++K Y++ D F FWFRF+Y N+
Sbjct: 116 DFTGLRNSDITPYLRNLIEA-DLIVREVPITEK-KTSKKGRYYVLDNFLAFWFRFIYPNL 173
Query: 335 QYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRID----LGFSPLRVGRWWHKGEE 390
+EEG +++++ +P ++G +E+I R+F+ ++ L F ++GRWW+K EE
Sbjct: 174 SRIEEGIFN--VDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEE 231
Query: 391 IDVIAYN--EEKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRG-ERVYGLISREVEG 447
ID++A N E+K L EVKW L + A+ +L L +K +L+ L G E+ YGLI+RE++
Sbjct: 232 IDIVALNEREKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKR 291
Query: 448 KEELRNCGYLVFDLND 463
KE L GYLV+DL D
Sbjct: 292 KEPLIEDGYLVWDLED 307
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 179 bits (450), Expect = 5e-44
Identities = 119/330 (36%), Positives = 181/330 (54%), Gaps = 20/330 (6%)
Query: 146 VLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVNIPARDFVEIFSALG 205
+LI GS V M+ I + K P++GR K++ F+ F I ++I+ G
Sbjct: 1 MLILCGSLVSFMEGI-LSGKSPIYGRRTGTWKVEEMSFFDVLKFHPIDIETAIKIYGVFG 59
Query: 206 GMPKYLLYLRHYYNGNTI-ETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVS 264
G+P+Y + Y G E ++ L + + +E +LK E R YFSIL A+S
Sbjct: 60 GVPQYWV---DYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEEL-RDVSRYFSILRAIS 115
Query: 265 LGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFN 324
LGY +I+D ++ ++GKYL+ L Y+ +E P K Y I + FFN
Sbjct: 116 LGYSRFGQIADAARIETKSLGKYLNVL-EEMGYIREEKPIVG----RGKTVYKINEHFFN 170
Query: 325 FWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFI----RRIDLGFSPLR 380
FWFRFV+ +E G V+ ++++ F ++G +E I R+F+ +R L F +
Sbjct: 171 FWFRFVFPRRSEIEMG--FDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTK 228
Query: 381 VGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSKARAKRLLRDLERKGELVPLRG-ERV 437
+GRWW+KGEEID++A NE EK ALF EVKW +L + A ++L+DL+RK EL L +
Sbjct: 229 IGRWWYKGEEIDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKA 288
Query: 438 YGLISREVEGKEELRNCGYLVFDLNDIVYI 467
YG+I++ + KEELR G+L +DL D I
Sbjct: 289 YGIIAKSIMEKEELREEGFLAWDLRDFELI 318
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 163 bits (408), Expect = 4e-39
Identities = 113/334 (33%), Positives = 169/334 (49%), Gaps = 36/334 (10%)
Query: 146 VLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVNIPARDFVEIFSALG 205
+L+ GS +G+M+ + PL+GR +L+ + + F P ++ + LG
Sbjct: 1 MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPIEG-LKFYMLLG 59
Query: 206 GMPKYLLYLRHYYN-GNTIE----TLRSLFFDE----LSPLREEGFNVLKLEFGRYYRSY 256
G+P YL+ Y G +E T F+DE LS L+E ++Y
Sbjct: 60 GIPAYLIIASRYETVGEFVEREFLTPEGYFYDEPYIVLSELKE-------------LKTY 106
Query: 257 FSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSY 316
FSIL A+S G P EI+ + GL+ + YL L ++ +E+P RK ++ Y
Sbjct: 107 FSILSAMSSGRRRPSEIASEVGLEGRKIYPYLETLIR-LGFVERELPIA---RKEKRGLY 162
Query: 317 FIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRID--- 373
I D WF +Y N +E G IT L + + +E + REF+ ++
Sbjct: 163 RISDPMLMSWFSLIYPNRTEIELGTIT--LERVEKILQRIFSFRFEDVSREFLVEMNKAG 220
Query: 374 -LGFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAKRLLRDLERKGELV 430
L F ++GRWW+KGEEID++A NE EK EVKW DL + K +L+DLE+K LV
Sbjct: 221 KLPFRFTKIGRWWYKGEEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLV 280
Query: 431 PLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
L G ++ YGLI + +E KE+LR YLV+DL D
Sbjct: 281 GLDGWDKNYGLIEKSIERKEKLREENYLVWDLKD 314
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 147 bits (367), Expect = 3e-34
Identities = 91/246 (36%), Positives = 133/246 (53%), Gaps = 19/246 (7%)
Query: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
T S F E L EE F R +Y+++LEAV+ EI+ L+
Sbjct: 2 TPNSFLFREAKELLEEEF--------REPETYYTLLEAVAREKTRVNEIAQYAFLEPKNT 53
Query: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITK 344
+YL L + + L +E+P +K +K Y RD +F FWFRFV + +E G
Sbjct: 54 ARYLRILED-LDILKRELPIG---KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEG 109
Query: 345 VLNDLRENFPAFVGKEYERIGREFIRRI----DLGFSPLRVGRWWHKGEEIDVIAYN--E 398
L D F ++G +E I R+F+ + L F ++GRWWHKGEEID++A N E
Sbjct: 110 ALEDFNAGFSQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNERE 169
Query: 399 EKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYL 457
+KV L EVKW +L A+ +LRDLERK + + L G E+ Y L+++ VEGK +L+ G+
Sbjct: 170 KKVLLVEVKWKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWF 229
Query: 458 VFDLND 463
++DL D
Sbjct: 230 IWDLED 235
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 143 bits (356), Expect = 6e-33
Identities = 120/418 (28%), Positives = 202/418 (47%), Gaps = 43/418 (10%)
Query: 12 DRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLED 71
+REREL+ L + S +++YGRRR+GKT L+ + G IY EK+ ++
Sbjct: 8 NRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKNNLRKFKE 67
Query: 72 FTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSS 131
T Y +++ ++E +E +F + RD +II+DEF S+ S+
Sbjct: 68 LTES----------KYEDIKY--VKEDWEAIFHYLRD--KIIIIDEFPYMIKEDESILST 113
Query: 132 LQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVN 191
QK+ D + S LI +GS + MM+ + K PL+GR I+LK F F N
Sbjct: 114 FQKIVDETLKGSKTKLILLGSSISMMEDA-ISYKSPLYGRRTASIELKELKFKDLKGF-N 171
Query: 192 IPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFGR 251
D + ++ GG+P YL + + ++ + + + S +++E +L+ EF
Sbjct: 172 FSLIDAIHVYGFAGGVPFYLTKAKTPF----LKWINAELKEVDSFIKDEIDFMLRYEFSE 227
Query: 252 YYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKT 311
+Y IL A+S G T EI D + + +S N E +G + E P K
Sbjct: 228 -IGTYKEILHAISSGKNTLGEIKD-----FVRISGDVSSYLNKLEKIG--IIGKEFPYKM 279
Query: 312 RK-VSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIR 370
+K Y+I+D F FWF F+Y N+ +EEG + + + ++G+ +E+I RE++
Sbjct: 280 KKGARYYIKDNFTLFWFTFIYPNLSLIEEG----IYEIKEDEYNVYLGRIFEKIAREYVE 335
Query: 371 RIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLERKGE 428
+ ++V R W K EID+ Y + E KWS+ +++L +L+RK E
Sbjct: 336 DV----YKVKVERLWFKDVEIDI--YGDGIAG--ECKWSE--GINGEKVLYELKRKVE 383
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 138 bits (344), Expect = 1e-31
Identities = 114/360 (31%), Positives = 176/360 (48%), Gaps = 20/360 (5%)
Query: 3 IYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGE 62
I ++ + F +R EL+KL ++ S ++VYGRRRVGKT L+ E LK +Y E
Sbjct: 7 ITMIMHKFVNRSEELEKLRAYLEKR--SLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKE 64
Query: 63 KDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFR 122
++ L ++++ A ++ SS +ELFE L I + ++LDEF
Sbjct: 65 EEPRETLVSLSKKLYHATGD--AQFLESPPSSFDELFELL----GGIGITLVLDEFPLLV 118
Query: 123 SVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFD 182
P + LQ+ WD GE +VVL GS V MMK + D P+ GR +K+KP +
Sbjct: 119 KNYPRILGLLQEYWDF-GEGGSVVL--CGSSVSMMKGL-TDYGSPIHGRRTISVKVKPLE 174
Query: 183 FWRAYNFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEG 241
F F + V + L G+P+YL LR + + E + FF L EE
Sbjct: 175 FRHVGEFFPGYSPEELVRAYGVLDGIPEYL--LRFDPSQSVEENVIREFFGR-GYLYEEA 231
Query: 242 FNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKE 301
+L+ E R +Y +ILEA++ GY + EI KTG+ + +YLS L E + +E
Sbjct: 232 ELLLRYEL-RDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTL-EELELVKRE 289
Query: 302 VPATEDPRKTRK--VSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGK 359
P K R+ Y + D +F F++ FVY + +E G + L + R F ++G+
Sbjct: 290 YPVLPGAAKRRRKGARYGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGR 349
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 122 bits (302), Expect = 1e-26
Identities = 66/152 (43%), Positives = 96/152 (62%), Gaps = 8/152 (5%)
Query: 318 IRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE---FIRRIDL 374
I D +F FWFR+V N YLE G V +++F ++G +E++ R F+R
Sbjct: 2 INDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLT-- 59
Query: 375 GFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAKRLLRDLERKGELVPL 432
GF ++GRWW +GEE++V+A NE +K L EVKW +LSK AK +LRDL RK ELV L
Sbjct: 60 GFHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVGL 119
Query: 433 RG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
+R YG+++++++ EELR G+L +DL D
Sbjct: 120 DSWKRFYGVVAKKIDDMEELREEGWLAWDLRD 151
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 110 bits (272), Expect = 4e-23
Identities = 54/123 (43%), Positives = 77/123 (61%)
Query: 330 VYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRIDLGFSPLRVGRWWHKGE 389
VY N+ LE G + +V N + + + GK +E + E ++ + F V +WWHKGE
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEMLKLKIIDFGQKSVAKWWHKGE 64
Query: 390 EIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRGERVYGLISREVEGKE 449
EIDV+AYN K+ FEVKW DLS AK +LRDLERK + V GE+ +I++ +EGKE
Sbjct: 65 EIDVLAYNNNKMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDGEKECYIIAKSIEGKE 124
Query: 450 ELR 452
+L+
Sbjct: 125 KLK 127
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 87.0 bits (212), Expect = 4e-16
Identities = 63/204 (30%), Positives = 105/204 (50%), Gaps = 17/204 (8%)
Query: 30 SFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLEDFTREVEMALSSYLPPYVR 89
+ V+V GRRR+GK+ LV+EFLKGK I + + E L E ++ AL Y
Sbjct: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISV----QFERRLWEYNLMKLNKALGKYFN-IPT 65
Query: 90 LRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIA 149
FS+ + F F+ S++ + +L + V+ S++ ++ E+SN++LI
Sbjct: 66 PNFSTFSDAFRFVASQSKERLVAYLL----RYSDVEAEFQSTVDEIL----EESNIMLIL 117
Query: 150 VGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN-FVNIPARDFVEIFSALGGMP 208
S +G++KR F D L+GR D + L+P F + F I A + V+++S G+P
Sbjct: 118 SASSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIP 177
Query: 209 KYLLYLRHYYNGNTIETLRSLFFD 232
+ YL + N E +++ FFD
Sbjct: 178 R---YLELFEGRNVEEEIKTNFFD 198
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 79.2 bits (192), Expect = 9e-14
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 9/209 (4%)
Query: 108 DIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEP 167
D ++V+I+DEF + S LQK WDLK +N++LI GS V +M+ + K P
Sbjct: 9 DGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSP 68
Query: 168 LFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIE 224
L+GR +L F+ F+ D ++++ G +P YLL ++ N +E
Sbjct: 69 LYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVE 128
Query: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
R LF L EE +L+ E R +YF+IL+A++ G EI + TGL V
Sbjct: 129 --RVLFKGAF--LYEEAEFLLREEL-REPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183
Query: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRK 313
KYL+ L + +EVP T ++ K
Sbjct: 184 SKYLTVL-QRLGIVKREVPVTATMKEVSK 211
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 78.4 bits (190), Expect = 2e-13
Identities = 37/103 (35%), Positives = 59/103 (56%), Gaps = 3/103 (2%)
Query: 316 YFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRIDLG 375
Y I D ++ FWFRFVY N + +E + L ++ ++ ++G+ +E+ +F+ +
Sbjct: 3 YEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK---R 59
Query: 376 FSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKR 418
F+ R GRWW + EEIDV+ FEVKW DLS+ A+R
Sbjct: 60 FAFERAGRWWSREEEIDVVGVKRGMAYFFEVKWKDLSEREARR 102
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 77.3 bits (187), Expect = 4e-13
Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 52/308 (16%)
Query: 11 YDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGE---KDEAL 67
+DRE E +KL E S + ++ G RRVGK++L+R FL + GI + E + +
Sbjct: 15 FDREEEFRKLEE--SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHI 72
Query: 68 LLEDFTREVEMALSSYLPPYVRLRFS-------------SLEELFEFLFDFSRDI-KLVI 113
E+ +E++ +S + + + S SL E+F L D ++ + ++
Sbjct: 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIV 132
Query: 114 ILDEFQNFRSVKPSLFSSLQKLWDLKGED-SNVVLIAVGSYVGMMKRI--FMDRKEPLFG 170
DE Q R L L+ + N+ +I GS VG++ D + PL+G
Sbjct: 133 AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYG 192
Query: 171 RVDEWIKLKPFD-------FWRAYNFVN--IPARDFVEIFSALGGMPKYLL-----YLRH 216
R+ + +KPFD R + VN +P + E L G+P +L+ YLR+
Sbjct: 193 RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRN 252
Query: 217 YYNG----NTIETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKE 272
G T+E + L EL LR R Y IL A++LGY
Sbjct: 253 GDFGRAMKRTLEVAKGLIMGELEELR------------RRSPRYVDILRAIALGYNRWSL 300
Query: 273 ISDKTGLK 280
I D +K
Sbjct: 301 IRDYLAVK 308
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.145 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179858308
Number of Sequences: 2977
Number of extensions: 8061792
Number of successful extensions: 18255
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18138
Number of HSP's gapped (non-prelim): 25
length of query: 472
length of database: 189,106,746
effective HSP length: 53
effective length of query: 419
effective length of database: 157,386,935
effective search space: 65945125765
effective search space used: 65945125765
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 167 (69.5 bits)