BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1371 (PAB1371) DE:Hypothetical protein
         (472 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st...   959  0.0
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ...   289  5e-77
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte...   287  2e-76
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st...   277  3e-73
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ...   267  2e-70
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st...   262  6e-69
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ...   261  1e-68
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st...   257  2e-67
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st...   257  2e-67
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha...   230  2e-59
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st...   215  7e-55
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ...   210  2e-53
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ...   182  6e-45
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ...   179  5e-44
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ...   163  4e-39
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st...   147  3e-34
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat...   143  6e-33
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]      138  1e-31
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st...   122  1e-26
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir...   110  4e-23
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st...    87  4e-16
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st...    79  9e-14
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ...    78  2e-13
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st...    77  4e-13

>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
           >gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 472
           
 Score =  959 bits (2452), Expect = 0.0
 Identities = 472/472 (100%), Positives = 472/472 (100%)

Query: 1   MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
           MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV
Sbjct: 1   MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60

Query: 61  GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
           GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN
Sbjct: 61  GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120

Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
           FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP
Sbjct: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180

Query: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
           FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE
Sbjct: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240

Query: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
           GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK
Sbjct: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300

Query: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
           EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE
Sbjct: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360

Query: 361 YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL 420
           YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL
Sbjct: 361 YERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLL 420

Query: 421 RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL 472
           RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL
Sbjct: 421 RDLERKGELVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIVYIPPGKL 472


>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
           >gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 496
           
 Score =  289 bits (732), Expect = 5e-77
 Identities = 181/465 (38%), Positives = 269/465 (56%), Gaps = 20/465 (4%)

Query: 9   MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
           +F DR++EL  L E      + F+V+YGRRRVGKTAL+ EFL+   G+YL   E  E   
Sbjct: 38  LFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARETSEIEN 97

Query: 69  LEDFT-REVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPS 127
           LE F+ R  E    S+L    +    SL+  FE+L     +   +I +DEF        +
Sbjct: 98  LERFSLRLAEYFNDSFLK---KNPLRSLDAFFEYL-STKAEKPFIIAIDEFPYLVKGNKA 153

Query: 128 LFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAY 187
           L S LQ+ W++K     + LI  GS V M +R+ +  K PL+GR    +KLKP DF+ A 
Sbjct: 154 LPSILQEYWEMKLSKKKIFLIVSGSSVSMTERL-LGYKSPLYGRRTAQLKLKPLDFFNAR 212

Query: 188 NFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLK 246
            F+      DFV ++  LGG P YLL    + +  ++E     +F   S L  +   +L+
Sbjct: 213 EFLPKYSLEDFVRVYGILGGTPAYLL---EFSDEKSLEENLKSYFRVDSLLYGDALFILR 269

Query: 247 LEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATE 306
            E     R+YF+I+EA++ G  T  EI ++TGL+  TVGKYLS L +  + + +EVP T 
Sbjct: 270 EELDE-PRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLID-LDLVRREVPITA 327

Query: 307 DPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGR 366
             RK+RK  Y+I D +F FWFR+VY N   +E G    +++ + ++   + G+ +E + +
Sbjct: 328 S-RKSRKGRYYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAK 386

Query: 367 EFIRRID----LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLL 420
           EF+ R++    L F   RVGRWW+K EEID++A N  E+KV   EVKW DLSK  A+ +L
Sbjct: 387 EFLLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGIL 446

Query: 421 RDLERKGELVPL-RGERVYGLISREVEGKEELRNCGYLVFDLNDI 464
           +DL+RK +LV L    + YGL+++ V GK+E++  G+L +DL DI
Sbjct: 447 KDLKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDI 491


>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 458
           
 Score =  287 bits (726), Expect = 2e-76
 Identities = 176/464 (37%), Positives = 271/464 (57%), Gaps = 22/464 (4%)

Query: 9   MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
           MF DREREL+ L   Y   G  F+V+YGRRRVGKTAL+ EF+    GIYL   E      
Sbjct: 1   MFLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLEN 60

Query: 69  LEDFTREVEMALSSYLPP--YVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKP 126
           L+ F+      LS Y       R  F + +   E+L   + + +LV+++DEF        
Sbjct: 61  LKRFSDR----LSEYFGDDFLKRNPFQNWDAFLEYLNQKATE-RLVVVIDEFPYLVKGDR 115

Query: 127 SLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRA 186
           SL S LQ+ WDLK  +  + LI  GS + MM+++ +  K P++GR    I LKP DF  A
Sbjct: 116 SLPSILQEYWDLKLSNGRIFLIICGSSISMMEKL-LGYKSPIYGRRTGQINLKPVDFLHA 174

Query: 187 YNFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVL 245
             F+      DF++ +  LGG P +LL    + +  TI+     +    S L ++ F VL
Sbjct: 175 REFLPGYSLEDFIKAYGILGGSPAHLL---EFDDSKTIKENLLEYLRSDSLLYQDAFFVL 231

Query: 246 KLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPAT 305
           + E     R+YF+I+EAV+ G  +  EI ++TGL   TV KYLS L    +++ +E+P T
Sbjct: 232 REEL-EEPRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLI-ELDFVKREIPIT 289

Query: 306 EDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIG 365
              RK+R+  Y+I+D +F FWFR+++ NI ++E     ++L  + ++ P ++G  +E + 
Sbjct: 290 AS-RKSRRGRYYIKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVA 348

Query: 366 REFIRRID--LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLLR 421
            EF+  I   L F PL++GRWWHK EEID++A+N  EEK  L EVKW  L+K  A ++L+
Sbjct: 349 IEFLPLISNKLPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILK 408

Query: 422 DLERKGELVPLR-GERVYGLISREVEGKEELRNCGYLVFDLNDI 464
           DL RK +++ ++  E+ +G+I++ V+ KE+++  G L++DL DI
Sbjct: 409 DLNRKSKILKMKEWEQYHGIIAKRVKDKEKIK--GGLIWDLEDI 450


>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
           >gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 469
           
 Score =  277 bits (700), Expect = 3e-73
 Identities = 171/463 (36%), Positives = 266/463 (56%), Gaps = 18/463 (3%)

Query: 9   MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
           MF  RE EL  L E      + F+V+YGRRR+GKTAL+ E ++   GIYL   E  EA  
Sbjct: 1   MFISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADN 60

Query: 69  LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
           L+ F+  V       L    +  F + +  FE+L+  S + ++++ +DEF        +L
Sbjct: 61  LKRFSERVAKYFDGDL--LRKNPFQNWDAFFEYLYQKSGE-RVIVAIDEFPYLLKGNKAL 117

Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
            S LQ+ WDLK   S + LI  GS + MM+++ +  K P++GR    +KLKP DF+ A  
Sbjct: 118 ASILQEYWDLKLSKSKIFLIICGSSITMMEKL-LGYKSPIYGRRTCQLKLKPMDFFSARK 176

Query: 189 FV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKL 247
           F+   P  D +  +  LGG P YLL    + +  +IE     +F   S L ++   +L+ 
Sbjct: 177 FLPRYPIEDSLRAYGILGGTPAYLL---KFDDKKSIEENLLSYFRPDSFLYQDALFILRE 233

Query: 248 EFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATED 307
           E     R+YF+I+EA++ G  +  EI ++T L   TVGKYLS L +  + + +EVP TE 
Sbjct: 234 ELNE-PRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLID-LDLVRREVPITES 291

Query: 308 PRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE 367
             K+RK  Y+I D +F FWFR+V  N+  +E G+   ++  + E+F  ++   +E + R+
Sbjct: 292 -WKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQ 350

Query: 368 FIRRID----LGFSPLRVGRWWHKGEEIDVIAYNEEK--VALFEVKWSDLSKARAKRLLR 421
           F+ R++    L  S +++GRWWHKGEEID++A NE K  V   EV+W +LS+   ++ +R
Sbjct: 351 FLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIR 410

Query: 422 DLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
            L +K +LV L   +  YGL+ + + GKE+LR+ G+LV+DL D
Sbjct: 411 KLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKD 453


>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
           >gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 452
           
 Score =  267 bits (676), Expect = 2e-70
 Identities = 175/469 (37%), Positives = 273/469 (57%), Gaps = 30/469 (6%)

Query: 1   MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
           M+I ++   F +R+REL+ L ++Y + G++ VV+YGRRRVGKTAL+R+FL+ K GIY   
Sbjct: 1   MIIIIMIRKFVNRKRELETLEKLYEK-GANLVVIYGRRRVGKTALLRKFLEEKRGIYFLC 59

Query: 61  GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
             +     L+ F++E+           + L F   E+ FEFL   S+  KLV+++DEF  
Sbjct: 60  SRRGYEKDLKRFSQELSKFFG------IPLSFEDFEDAFEFL---SKQGKLVVVIDEFPY 110

Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
                  + S  Q++ DL  E S V+LI  GS +GMM++  +  K PL+GR    +K+KP
Sbjct: 111 LIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKP 170

Query: 181 FDFWRAYNFVNIPARDF---VEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPL 237
           F F   ++ V    RDF   V ++    G+P+Y+ + R    G+  E +R+ FFD  S L
Sbjct: 171 FRF---FDMVEWYGRDFEKLVRLYGVTWGVPRYMEFFR---EGSDEEIIRN-FFDPSSFL 223

Query: 238 REEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEY 297
             E   +L +E  R    Y  I+EA++LG     EI++ + +    +  YL  L      
Sbjct: 224 FNEA-KLLLMEELRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTL-QELGI 281

Query: 298 LGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFV 357
           + +  P T+  R  ++  Y I DE+F F++RFV    + +E       + D R+NF +++
Sbjct: 282 VKRITPITK--RNAKRGVYVIEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYL 339

Query: 358 GKEYERIGREFIRRIDLGFSPLRVGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSKAR 415
           G+ +E++ +EF+  + +G  P ++G+WW+KGEEID++A NE EK ALF EVKW  L +  
Sbjct: 340 GETFEKVSKEFL--LAIGDYP-KIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKERE 396

Query: 416 AKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
           AKR+L+ LE+K  L+ L G  + YG+I+R VEGKE LR+ G+LV+DL D
Sbjct: 397 AKRILKRLEKKSMLINLDGWIKDYGVIARRVEGKESLRDEGWLVWDLED 445


>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
           >gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 462
           
 Score =  262 bits (663), Expect = 6e-69
 Identities = 165/470 (35%), Positives = 265/470 (56%), Gaps = 25/470 (5%)

Query: 1   MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
           M I ++   F +R+RELK L   +  +G    VVYGRRRVGKTAL+R+FL+ K GIY   
Sbjct: 1   MFIIIMIRKFVNRKRELKVLERAWE-EGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC 59

Query: 61  GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
            ++     L+ F++E+    SS++   VR  F S ++ F+FL       KL++I DEF  
Sbjct: 60  SQRGYEKDLKRFSQEI----SSFIGAPVR--FESFKDAFKFLRGQG---KLLVIFDEFPY 110

Query: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
                  + S  Q++ D+  E S + +I  GS VGMM+R  +  K PL+GR    +K+KP
Sbjct: 111 LIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKP 170

Query: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
           F F+    +        + ++    G+PKY+ + +    G+  E + + FF+  + L  E
Sbjct: 171 FRFFDMVEWFGKDFERLLRLYGVTWGIPKYMEFFK---TGSDDEIINN-FFNPSAFLFNE 226

Query: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
              +L +E  R    Y  I+EA+++G     EI+   G++   +  YL  L+N    + +
Sbjct: 227 A-RLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSN-LGIVRR 284

Query: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
           EVP TE  RK ++  Y I DE+F F+ RFV  + + ++       + D   NF  ++GK 
Sbjct: 285 EVPITE--RKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKT 342

Query: 361 YERIGREFIRRID----LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKA 414
           +E++ REF+  ++    L F  + +G+WW + EEID++A N  E+KV L EVKW +L + 
Sbjct: 343 FEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEK 402

Query: 415 RAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
            A+ +L+DLERKGELV L   ++ YGLI++ ++ KE L++ G+L++DL D
Sbjct: 403 EARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKD 452


>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
           >gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 471
           
 Score =  261 bits (661), Expect = 1e-68
 Identities = 176/480 (36%), Positives = 265/480 (54%), Gaps = 36/480 (7%)

Query: 2   VIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVG 61
           +I +    F DREREL  L E Y+   +  +++YGRRR+GKT L+  F + K  +Y    
Sbjct: 3   IILMSIQKFVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLAS 62

Query: 62  EKDEALLLEDFTREVEMALSSYLPP--YVRLRFSSLEELFEFLFDFSRDI---KLVIILD 116
           EK       D  RE++  +  +L    + R+ FS ++EL   L +FS+ +   ++V+I+D
Sbjct: 63  EKP----YRDNLRELQRMMGDFLGDRLFSRVEFSDIDEL---LIEFSKRVQGRRVVLIID 115

Query: 117 EFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWI 176
           EF         + S +Q+ WD++   S+++LI  GS V  M+   +  K PL+GR     
Sbjct: 116 EFPYLIEHYKPVLSLIQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQW 175

Query: 177 KLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIETLRSLFFDE 233
           K+    FW    F  +    + V+++  LGG+P YLL       ++ N +E + S    +
Sbjct: 176 KVGELPFWSLREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLS----K 231

Query: 234 LSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTN 293
            + L EE   +LK E  R   +YF IL+A++ G     EI + TGL    V KYL+ L  
Sbjct: 232 GAFLYEEAEILLKEEM-REPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVL-- 288

Query: 294 HYEYLG---KEVPATEDPRKT-RKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDL 349
             E LG   +EVP T   ++  ++  Y I D +  FWFR+V  N  YLE G   ++    
Sbjct: 289 --EKLGMVEREVPVTASRKEALKRGRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERS 346

Query: 350 RENFPAFVGKEYERIGRE---FIRRIDLGFSPLRVGRWWHKGEEIDVIAYN--EEKVALF 404
           +E+F  ++G  +ER+ R+   F +  D  FS  RVGRWW+K EEID++A N  E+KV   
Sbjct: 347 KEDFKEYMGGVFERLLRKPEVFTKLTDFRFS--RVGRWWYKNEEIDLVALNEREKKVLFI 404

Query: 405 EVKWSDLSKARAKRLLRDLERKGELVPL-RGERVYGLISREVEGKEELRNCGYLVFDLND 463
           EVKW DLSK  A+ +L+DLERK +LV L   E+ YGL+++ +EGKE+LR   YLV+DL D
Sbjct: 405 EVKWKDLSKREARGILKDLERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKD 464


>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
           >gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 451
           
 Score =  257 bits (650), Expect = 2e-67
 Identities = 165/464 (35%), Positives = 257/464 (54%), Gaps = 31/464 (6%)

Query: 12  DRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLED 71
           + E+ELK + E  + +    +V+YGRRRVGKT L+ E +KG   +Y    E D    L  
Sbjct: 4   ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDN---LRH 60

Query: 72  FTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSS 131
           F    E         YVR  + S+    +           +II+DEF N     P + S 
Sbjct: 61  FRETAERVFPEV--KYVREDWESILHALK---------GKIIIIDEFPNLIKEDPKVVSL 109

Query: 132 LQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFV- 190
            Q+  DL+  +SN  +I +GS V ++    + +K PL+GR    +KLKP +F+    F  
Sbjct: 110 FQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFP 169

Query: 191 NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFG 250
                + VEI+    G+P Y++ ++  +     E L       LS  ++E   +LK EF 
Sbjct: 170 EASWEELVEIYGFTDGIPYYIIQVKLPF----WEWLEKELLSPLSFFKDEVDFLLKYEFT 225

Query: 251 RYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRK 310
              R Y  ILEA++LG  T KEI D TG++   +  YL  L    + + +EVP TE P  
Sbjct: 226 E-TRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLL-ETDLVVREVPITEKP-Y 282

Query: 311 TRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIR 370
           +++  Y++ D F  FWFR++Y N+  +EEG  T  + ++R ++  ++G  +E++ R+F+ 
Sbjct: 283 SKRGRYYLADNFLAFWFRYIYPNLSRIEEG--TFSIEEIRGDYSQYLGWVFEKVARQFLL 340

Query: 371 RIDLGFSPLRVGRWWHKGEEIDVIAYNEE-KVALF-EVKWSDLSKARAKRLLRDLERKGE 428
           ++++ F+  ++GRWWHK +EID++A NE  K  LF EVKW  L +  A+++LR+LE+KG+
Sbjct: 341 KLNINFT--KIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGK 398

Query: 429 LVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND--IVYIPP 469
           L  L   E+ YGLI+R +EGKE L+  GYLV+DL D  +VY  P
Sbjct: 399 LTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQP 442


>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
           >gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 459
           
 Score =  257 bits (650), Expect = 2e-67
 Identities = 168/464 (36%), Positives = 260/464 (55%), Gaps = 30/464 (6%)

Query: 10  FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLL 69
           F DRE EL+ L + +S   +  +++YGRRR+GKT L+++FL    GIYL   E +   +L
Sbjct: 7   FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESE--TVL 64

Query: 70  EDFTREVEMALSSYLPPYVRLR-FSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
           EDF+   E     +  P+++     +    F +L   S + +LV+++DE Q     +   
Sbjct: 65  EDFS---ERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSE-RLVVVIDEVQYIAKSQKDF 120

Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
            S+LQK WDL   D+ ++LI  GS V  M+ I +  K P++GR     K++  DF+ A+ 
Sbjct: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGI-LSAKSPIYGRRTGAWKVEEMDFFNAWK 179

Query: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNT--IETLRSLFFDELSPLREEGFNVLK 246
           F ++ A   V I+S  GG+P+YL      YN N    E LR L   + +   +E   +LK
Sbjct: 180 FHDVDAETVVHIYSVFGGVPQYLA----DYNPNLDFWENLRELLLSKGAKYYDEPKYLLK 235

Query: 247 LEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATE 306
            E  R    YFSIL A++LGY    +I+DK  ++  ++ KYL  L +   Y+ +E P   
Sbjct: 236 QEL-RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL-SEMGYIEEETPVIG 293

Query: 307 DPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGR 366
             R      Y IRD  F FWFRFVY     +E G    V+ +++  F  ++GK +E I R
Sbjct: 294 KGR----TIYRIRDNLFAFWFRFVYPRRSEIEMG--FDVVEEIKGEFNDYLGKAFEGIAR 347

Query: 367 EFIRRID-LGFSPLR---VGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLL 420
           +F+ R++ LG  P R   +GRWWH+GEE+D++A N  E+K  L  V+W +L     +R+L
Sbjct: 348 QFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRIL 407

Query: 421 RDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
            DL RK EL+ L G E+ Y +++R+V+GKE+L +  + ++DL D
Sbjct: 408 GDLRRKSELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRD 450


>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
           jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
           HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
           hypothetical protein MJECL04 - Methanococcus jannaschii
           plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
           jannaschii predicted coding region MJECL04
           [Methanococcus jannaschii]
           Length = 439
           
 Score =  230 bits (581), Expect = 2e-59
 Identities = 161/471 (34%), Positives = 246/471 (52%), Gaps = 50/471 (10%)

Query: 9   MFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALL 68
           MF DRE ELK LNE        F+V+YGRRR+GKT L  + ++ +  IY    E D    
Sbjct: 1   MFVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDN--- 57

Query: 69  LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
           L+ F R      +S + P +       E  F FL D       +II+DEF N     P++
Sbjct: 58  LKHFKR-----YASKVEPTIEYAKEDWEAYFNFLKD------KIIIIDEFPNLIKENPNV 106

Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
            S  Q++ D+  +++   LI +GS + MM    +  K PL+GR    +K+KP  F     
Sbjct: 107 LSLFQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKE 166

Query: 189 FV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDEL--------SPLRE 239
           F       + VEI+    G+P YL            E ++  F+D L        S LR 
Sbjct: 167 FFPKAIWEELVEIYGFADGIPYYL------------EKVKLPFWDYLDKEIKRVDSFLRY 214

Query: 240 EGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLG 299
           E   ++K EF     +Y  ILEA++ G  T  EI +  G K   +  YL  L    E++ 
Sbjct: 215 EVDFLMKYEF-EEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLI-EVEFIE 272

Query: 300 KEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGK 359
           ++ P TE   K++K  Y+I+D F  F+FR+++ N+  +EEG     + +++ ++  ++G 
Sbjct: 273 RQTPITESV-KSKKGRYYIKDNFIAFYFRYIFPNLSAIEEGIFD--IEEIKADYNQYLGF 329

Query: 360 EYERIGREFIRRID----LGFSPLRVGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSK 413
            +E++ +EF+  ++    L F  L++GRWWH+GEEID+IA N+ +K ALF EVKW DL  
Sbjct: 330 VFEKVAKEFLIELNKMNKLPFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKD 389

Query: 414 ARAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
              K++ RDL RK +LV L   E+ Y ++ +++E KE   N   L+FDL D
Sbjct: 390 RDVKKIYRDLYRKSKLVGLDDYEKYYAIVGKKIESKE---NGDCLLFDLED 437


>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
           >gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 459
           
 Score =  215 bits (543), Expect = 7e-55
 Identities = 158/468 (33%), Positives = 243/468 (51%), Gaps = 35/468 (7%)

Query: 10  FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGK-LGIYLFVGEKDEALL 68
           F DRE ELK L + ++    S V++YGRRR GKT L+ EF +GK    Y F+ +  E  +
Sbjct: 5   FVDREDELKALEDQWNST-PSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQI 63

Query: 69  LEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
                R +   L+ +    + L F+    LF++L     + K +IILDEF        ++
Sbjct: 64  -----RRLREELAEHFNDELFLSFNDWYPLFKYLASKVTE-KTLIILDEFSYAIKSDRTI 117

Query: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
            S+LQ+ WD       V+L+  GS +GMM    +    PL+GR      LKP   + +  
Sbjct: 118 VSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLK 177

Query: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGF-----N 243
           F +      +E++  +GG+P YL+    Y      +T R   F E + LR EGF      
Sbjct: 178 FFD-SFEVGLEMYMLVGGIPAYLIIASRYE-----DTRR---FIEETFLRTEGFFYDEPY 228

Query: 244 VLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVP 303
           +L     R  ++YFSIL A + G     EI+   GL+   +  YL  L     ++ +E+P
Sbjct: 229 ILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLV-RLGFIEREIP 287

Query: 304 ATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYER 363
                R  ++  Y ++D     WF  V  N   +E G I+   +D++E+     G  +E 
Sbjct: 288 IA---RNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGIIS--YDDVKEDIQRIYGIRFED 342

Query: 364 IGREFI----RRIDLGFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAK 417
           + REF+    RR  L F   R+GRWW+KGEEID++A NE  +++ L EVKW +LSK  AK
Sbjct: 343 VAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAK 402

Query: 418 RLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLNDI 464
            +L+DL+RK +L+ L G +  + L+++ V GK +LR  G+ V+DL D+
Sbjct: 403 GILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDL 450


>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
           >gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 456
           
 Score =  210 bits (530), Expect = 2e-53
 Identities = 156/462 (33%), Positives = 239/462 (50%), Gaps = 34/462 (7%)

Query: 10  FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLL 69
           F DRE E++ L   +  +  SFVV+YGRRRVGKT L++EF K K   +    E  + + +
Sbjct: 3   FIDRELEMEILEREWENR-PSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQM 61

Query: 70  EDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLF 129
           ++F + +   L       +  R     +L  +L +   D   +I+LDEF      +  + 
Sbjct: 62  KEFKKTMAEFLGDDFARKLETR--DWLDLLRYLAEKVDDC--LIVLDEFTYAIKSERKIL 117

Query: 130 SSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNF 189
           S LQ+ WD    +  V+L+  GS +GMM    +    PL+GR    + LKPFD+  A  F
Sbjct: 118 SDLQRTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKF 177

Query: 190 VNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIET-LRSLFFDELSPLREEGFNVLKLE 248
            + P    + ++  +GG+P YL     Y   NT+E  +R  F  +     +E + +L  E
Sbjct: 178 FSDPEFG-IRVYMLVGGIPSYLKLAGRY---NTVEEFIREEFLSDYGFFYDEPYVLLGEE 233

Query: 249 FGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDP 308
             R  ++YFSIL A++ G    + I++  GL + +V  Y+  L      + +E P     
Sbjct: 234 L-RELKTYFSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVR-LGLVERESPILG-- 289

Query: 309 RKTRKVS-YFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE 367
             +RKVS Y I+D     WF   Y  +  +  G  T  L+ L + +       +E + +E
Sbjct: 290 --SRKVSLYRIKDPMLLTWFTLTYPQMAEISSG--TAKLDSLYKVYSI----RFEELAKE 341

Query: 368 FIRRIDLGFSPLR---VGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLE 424
           F+      F P+    +GRWW++GEEID++A  ++K  L EVKW DLSK  A R+LR+LE
Sbjct: 342 FLTL----FRPIEFETLGRWWYRGEEIDIVALRKDKTTLIEVKWKDLSKRSALRVLRELE 397

Query: 425 RKGE-LVPLRGERVYGLISREVEGKEELRNCGYLVFDLNDIV 465
            K E L P+      GLI++ V GKE+LR  GYLV+DL DI+
Sbjct: 398 EKSEKLHPIEN---IGLIAKSVRGKEKLREEGYLVWDLEDII 436


>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
           >gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 320
           
 Score =  182 bits (458), Expect = 6e-45
 Identities = 112/316 (35%), Positives = 181/316 (56%), Gaps = 17/316 (5%)

Query: 156 MMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL 214
           M+    +  K PL+GR    +KL+P +F+    F  +    + VEI+    G+P Y++ +
Sbjct: 1   MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60

Query: 215 RHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEIS 274
           +  +     E L     + +S  ++E   +L+ EF     +Y  ILEA++LG  T KEI 
Sbjct: 61  KPPF----WELLEEELKNPISFFKDEVDFLLRYEFSEV-TTYKRILEAIALGKTTLKEIK 115

Query: 275 DKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNI 334
           D TGL+   +  YL  L    + + +EVP TE  + ++K  Y++ D F  FWFRF+Y N+
Sbjct: 116 DFTGLRNSDITPYLRNLIEA-DLIVREVPITEK-KTSKKGRYYVLDNFLAFWFRFIYPNL 173

Query: 335 QYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRID----LGFSPLRVGRWWHKGEE 390
             +EEG     +++++  +P ++G  +E+I R+F+  ++    L F   ++GRWW+K EE
Sbjct: 174 SRIEEGIFN--VDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEE 231

Query: 391 IDVIAYN--EEKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRG-ERVYGLISREVEG 447
           ID++A N  E+K  L EVKW  L +  A+ +L  L +K +L+ L G E+ YGLI+RE++ 
Sbjct: 232 IDIVALNEREKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKR 291

Query: 448 KEELRNCGYLVFDLND 463
           KE L   GYLV+DL D
Sbjct: 292 KEPLIEDGYLVWDLED 307


>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
           >gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 319
           
 Score =  179 bits (450), Expect = 5e-44
 Identities = 119/330 (36%), Positives = 181/330 (54%), Gaps = 20/330 (6%)

Query: 146 VLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVNIPARDFVEIFSALG 205
           +LI  GS V  M+ I +  K P++GR     K++   F+    F  I     ++I+   G
Sbjct: 1   MLILCGSLVSFMEGI-LSGKSPIYGRRTGTWKVEEMSFFDVLKFHPIDIETAIKIYGVFG 59

Query: 206 GMPKYLLYLRHYYNGNTI-ETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVS 264
           G+P+Y +    Y  G    E ++ L   + +   +E   +LK E  R    YFSIL A+S
Sbjct: 60  GVPQYWV---DYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEEL-RDVSRYFSILRAIS 115

Query: 265 LGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFN 324
           LGY    +I+D   ++  ++GKYL+ L     Y+ +E P         K  Y I + FFN
Sbjct: 116 LGYSRFGQIADAARIETKSLGKYLNVL-EEMGYIREEKPIVG----RGKTVYKINEHFFN 170

Query: 325 FWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFI----RRIDLGFSPLR 380
           FWFRFV+     +E G    V+ ++++ F  ++G  +E I R+F+    +R  L F   +
Sbjct: 171 FWFRFVFPRRSEIEMG--FDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTK 228

Query: 381 VGRWWHKGEEIDVIAYNE-EKVALF-EVKWSDLSKARAKRLLRDLERKGELVPLRG-ERV 437
           +GRWW+KGEEID++A NE EK ALF EVKW +L +  A ++L+DL+RK EL  L    + 
Sbjct: 229 IGRWWYKGEEIDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKA 288

Query: 438 YGLISREVEGKEELRNCGYLVFDLNDIVYI 467
           YG+I++ +  KEELR  G+L +DL D   I
Sbjct: 289 YGIIAKSIMEKEELREEGFLAWDLRDFELI 318


>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
           >gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 323
           
 Score =  163 bits (408), Expect = 4e-39
 Identities = 113/334 (33%), Positives = 169/334 (49%), Gaps = 36/334 (10%)

Query: 146 VLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVNIPARDFVEIFSALG 205
           +L+  GS +G+M+   +    PL+GR     +L+    + +  F   P    ++ +  LG
Sbjct: 1   MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPIEG-LKFYMLLG 59

Query: 206 GMPKYLLYLRHYYN-GNTIE----TLRSLFFDE----LSPLREEGFNVLKLEFGRYYRSY 256
           G+P YL+    Y   G  +E    T    F+DE    LS L+E              ++Y
Sbjct: 60  GIPAYLIIASRYETVGEFVEREFLTPEGYFYDEPYIVLSELKE-------------LKTY 106

Query: 257 FSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKTRKVSY 316
           FSIL A+S G   P EI+ + GL+   +  YL  L     ++ +E+P     RK ++  Y
Sbjct: 107 FSILSAMSSGRRRPSEIASEVGLEGRKIYPYLETLIR-LGFVERELPIA---RKEKRGLY 162

Query: 317 FIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRID--- 373
            I D     WF  +Y N   +E G IT  L  + +         +E + REF+  ++   
Sbjct: 163 RISDPMLMSWFSLIYPNRTEIELGTIT--LERVEKILQRIFSFRFEDVSREFLVEMNKAG 220

Query: 374 -LGFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAKRLLRDLERKGELV 430
            L F   ++GRWW+KGEEID++A NE  EK    EVKW DL +   K +L+DLE+K  LV
Sbjct: 221 KLPFRFTKIGRWWYKGEEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLV 280

Query: 431 PLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
            L G ++ YGLI + +E KE+LR   YLV+DL D
Sbjct: 281 GLDGWDKNYGLIEKSIERKEKLREENYLVWDLKD 314


>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
           >gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 243
           
 Score =  147 bits (367), Expect = 3e-34
 Identities = 91/246 (36%), Positives = 133/246 (53%), Gaps = 19/246 (7%)

Query: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
           T  S  F E   L EE F        R   +Y+++LEAV+       EI+    L+    
Sbjct: 2   TPNSFLFREAKELLEEEF--------REPETYYTLLEAVAREKTRVNEIAQYAFLEPKNT 53

Query: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITK 344
            +YL  L +  + L +E+P     +K +K  Y  RD +F FWFRFV    + +E G    
Sbjct: 54  ARYLRILED-LDILKRELPIG---KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEG 109

Query: 345 VLNDLRENFPAFVGKEYERIGREFIRRI----DLGFSPLRVGRWWHKGEEIDVIAYN--E 398
            L D    F  ++G  +E I R+F+  +     L F   ++GRWWHKGEEID++A N  E
Sbjct: 110 ALEDFNAGFSQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNERE 169

Query: 399 EKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYL 457
           +KV L EVKW +L    A+ +LRDLERK + + L G E+ Y L+++ VEGK +L+  G+ 
Sbjct: 170 KKVLLVEVKWKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWF 229

Query: 458 VFDLND 463
           ++DL D
Sbjct: 230 IWDLED 235


>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 420
           
 Score =  143 bits (356), Expect = 6e-33
 Identities = 120/418 (28%), Positives = 202/418 (47%), Gaps = 43/418 (10%)

Query: 12  DRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLED 71
           +REREL+ L +  S      +++YGRRR+GKT L+   + G   IY    EK+     ++
Sbjct: 8   NRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKNNLRKFKE 67

Query: 72  FTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSS 131
            T             Y  +++  ++E +E +F + RD   +II+DEF        S+ S+
Sbjct: 68  LTES----------KYEDIKY--VKEDWEAIFHYLRD--KIIIIDEFPYMIKEDESILST 113

Query: 132 LQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFVN 191
            QK+ D   + S   LI +GS + MM+   +  K PL+GR    I+LK   F     F N
Sbjct: 114 FQKIVDETLKGSKTKLILLGSSISMMEDA-ISYKSPLYGRRTASIELKELKFKDLKGF-N 171

Query: 192 IPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFGR 251
               D + ++   GG+P YL   +  +    ++ + +   +  S +++E   +L+ EF  
Sbjct: 172 FSLIDAIHVYGFAGGVPFYLTKAKTPF----LKWINAELKEVDSFIKDEIDFMLRYEFSE 227

Query: 252 YYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRKT 311
              +Y  IL A+S G  T  EI D      + +   +S   N  E +G  +   E P K 
Sbjct: 228 -IGTYKEILHAISSGKNTLGEIKD-----FVRISGDVSSYLNKLEKIG--IIGKEFPYKM 279

Query: 312 RK-VSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIR 370
           +K   Y+I+D F  FWF F+Y N+  +EEG    +     + +  ++G+ +E+I RE++ 
Sbjct: 280 KKGARYYIKDNFTLFWFTFIYPNLSLIEEG----IYEIKEDEYNVYLGRIFEKIAREYVE 335

Query: 371 RIDLGFSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLERKGE 428
            +      ++V R W K  EID+  Y +      E KWS+      +++L +L+RK E
Sbjct: 336 DV----YKVKVERLWFKDVEIDI--YGDGIAG--ECKWSE--GINGEKVLYELKRKVE 383


>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
           Length = 350
           
 Score =  138 bits (344), Expect = 1e-31
 Identities = 114/360 (31%), Positives = 176/360 (48%), Gaps = 20/360 (5%)

Query: 3   IYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGE 62
           I ++ + F +R  EL+KL     ++  S ++VYGRRRVGKT L+ E LK    +Y    E
Sbjct: 7   ITMIMHKFVNRSEELEKLRAYLEKR--SLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKE 64

Query: 63  KDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFR 122
           ++    L   ++++  A       ++    SS +ELFE L      I + ++LDEF    
Sbjct: 65  EEPRETLVSLSKKLYHATGD--AQFLESPPSSFDELFELL----GGIGITLVLDEFPLLV 118

Query: 123 SVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFD 182
              P +   LQ+ WD  GE  +VVL   GS V MMK +  D   P+ GR    +K+KP +
Sbjct: 119 KNYPRILGLLQEYWDF-GEGGSVVL--CGSSVSMMKGL-TDYGSPIHGRRTISVKVKPLE 174

Query: 183 FWRAYNFV-NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEG 241
           F     F       + V  +  L G+P+YL  LR   + +  E +   FF     L EE 
Sbjct: 175 FRHVGEFFPGYSPEELVRAYGVLDGIPEYL--LRFDPSQSVEENVIREFFGR-GYLYEEA 231

Query: 242 FNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKE 301
             +L+ E  R   +Y +ILEA++ GY +  EI  KTG+    + +YLS L    E + +E
Sbjct: 232 ELLLRYEL-RDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTL-EELELVKRE 289

Query: 302 VPATEDPRKTRK--VSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGK 359
            P      K R+    Y + D +F F++ FVY   + +E G +   L + R  F  ++G+
Sbjct: 290 YPVLPGAAKRRRKGARYGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGR 349


>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
           >gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  122 bits (302), Expect = 1e-26
 Identities = 66/152 (43%), Positives = 96/152 (62%), Gaps = 8/152 (5%)

Query: 318 IRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGRE---FIRRIDL 374
           I D +F FWFR+V  N  YLE G    V    +++F  ++G  +E++ R    F+R    
Sbjct: 2   INDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLT-- 59

Query: 375 GFSPLRVGRWWHKGEEIDVIAYNE--EKVALFEVKWSDLSKARAKRLLRDLERKGELVPL 432
           GF   ++GRWW +GEE++V+A NE  +K  L EVKW +LSK  AK +LRDL RK ELV L
Sbjct: 60  GFHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVGL 119

Query: 433 RG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
              +R YG+++++++  EELR  G+L +DL D
Sbjct: 120 DSWKRFYGVVAKKIDDMEELREEGWLAWDLRD 151


>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
           protein MJ0425 - Methanococcus jannaschii
           >gi|1591128|gb|AAB98412.1| (U67494) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 140
           
 Score =  110 bits (272), Expect = 4e-23
 Identities = 54/123 (43%), Positives = 77/123 (61%)

Query: 330 VYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRIDLGFSPLRVGRWWHKGE 389
           VY N+  LE G + +V N +  +   + GK +E +  E ++   + F    V +WWHKGE
Sbjct: 5   VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEMLKLKIIDFGQKSVAKWWHKGE 64

Query: 390 EIDVIAYNEEKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRGERVYGLISREVEGKE 449
           EIDV+AYN  K+  FEVKW DLS   AK +LRDLERK + V   GE+   +I++ +EGKE
Sbjct: 65  EIDVLAYNNNKMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDGEKECYIIAKSIEGKE 124

Query: 450 ELR 452
           +L+
Sbjct: 125 KLK 127


>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
           >gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 207
           
 Score = 87.0 bits (212), Expect = 4e-16
 Identities = 63/204 (30%), Positives = 105/204 (50%), Gaps = 17/204 (8%)

Query: 30  SFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLEDFTREVEMALSSYLPPYVR 89
           + V+V GRRR+GK+ LV+EFLKGK  I +    + E  L E    ++  AL  Y      
Sbjct: 11  TLVLVTGRRRIGKSRLVKEFLKGKRAISV----QFERRLWEYNLMKLNKALGKYFN-IPT 65

Query: 90  LRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIA 149
             FS+  + F F+   S++  +  +L     +  V+    S++ ++     E+SN++LI 
Sbjct: 66  PNFSTFSDAFRFVASQSKERLVAYLL----RYSDVEAEFQSTVDEIL----EESNIMLIL 117

Query: 150 VGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN-FVNIPARDFVEIFSALGGMP 208
             S +G++KR F D    L+GR D  + L+P  F   +  F  I A + V+++S   G+P
Sbjct: 118 SASSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIP 177

Query: 209 KYLLYLRHYYNGNTIETLRSLFFD 232
           +   YL  +   N  E +++ FFD
Sbjct: 178 R---YLELFEGRNVEEEIKTNFFD 198


>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
           >gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 215
           
 Score = 79.2 bits (192), Expect = 9e-14
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 108 DIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEP 167
           D ++V+I+DEF         + S LQK WDLK   +N++LI  GS V +M+   +  K P
Sbjct: 9   DGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSP 68

Query: 168 LFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIE 224
           L+GR     +L    F+    F+      D ++++   G +P YLL       ++ N +E
Sbjct: 69  LYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVE 128

Query: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
             R LF      L EE   +L+ E  R   +YF+IL+A++ G     EI + TGL    V
Sbjct: 129 --RVLFKGAF--LYEEAEFLLREEL-REPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183

Query: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRK 313
            KYL+ L      + +EVP T   ++  K
Sbjct: 184 SKYLTVL-QRLGIVKREVPVTATMKEVSK 211


>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
           >gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score = 78.4 bits (190), Expect = 2e-13
 Identities = 37/103 (35%), Positives = 59/103 (56%), Gaps = 3/103 (2%)

Query: 316 YFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIRRIDLG 375
           Y I D ++ FWFRFVY N + +E     + L  ++ ++  ++G+ +E+   +F+ +    
Sbjct: 3   YEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK---R 59

Query: 376 FSPLRVGRWWHKGEEIDVIAYNEEKVALFEVKWSDLSKARAKR 418
           F+  R GRWW + EEIDV+         FEVKW DLS+  A+R
Sbjct: 60  FAFERAGRWWSREEEIDVVGVKRGMAYFFEVKWKDLSEREARR 102


>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
           >gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 350
           
 Score = 77.3 bits (187), Expect = 4e-13
 Identities = 83/308 (26%), Positives = 132/308 (41%), Gaps = 52/308 (16%)

Query: 11  YDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGE---KDEAL 67
           +DRE E +KL E  S +     ++ G RRVGK++L+R FL  + GI +   E   +   +
Sbjct: 15  FDREEEFRKLEE--SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHI 72

Query: 68  LLEDFTREVEMALSSYLPPYVRLRFS-------------SLEELFEFLFDFSRDI-KLVI 113
             E+  +E++  +S +     + + S             SL E+F  L D   ++ + ++
Sbjct: 73  TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIV 132

Query: 114 ILDEFQNFRSVKPSLFSSLQKLWDLKGED-SNVVLIAVGSYVGMMKRI--FMDRKEPLFG 170
             DE Q  R         L  L+    +   N+ +I  GS VG++       D + PL+G
Sbjct: 133 AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYG 192

Query: 171 RVDEWIKLKPFD-------FWRAYNFVN--IPARDFVEIFSALGGMPKYLL-----YLRH 216
           R+   + +KPFD         R +  VN  +P  +  E    L G+P +L+     YLR+
Sbjct: 193 RIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYLRN 252

Query: 217 YYNG----NTIETLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKE 272
              G     T+E  + L   EL  LR            R    Y  IL A++LGY     
Sbjct: 253 GDFGRAMKRTLEVAKGLIMGELEELR------------RRSPRYVDILRAIALGYNRWSL 300

Query: 273 ISDKTGLK 280
           I D   +K
Sbjct: 301 IRDYLAVK 308


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.145    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179858308
Number of Sequences: 2977
Number of extensions: 8061792
Number of successful extensions: 18255
Number of sequences better than 1.0e-10: 24
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18138
Number of HSP's gapped (non-prelim): 25
length of query: 472
length of database: 189,106,746
effective HSP length: 53
effective length of query: 419
effective length of database: 157,386,935
effective search space: 65945125765
effective search space used: 65945125765
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 167 (69.5 bits)