BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1373 (PAB1373) DE:Hypothetical protein
         (270 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75064 hypothetical protein PAB1373 - Pyrococcus abyssi (st...   542  e-153
pir||A71059 hypothetical protein PH1167 - Pyrococcus horikoshii ...   228  8e-59
pir||H75086 hypothetical protein PAB1649 - Pyrococcus abyssi (st...    96  4e-19

>pir||A75064 hypothetical protein PAB1373 - Pyrococcus abyssi (strain Orsay)
           >gi|5458919|emb|CAB50406.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 270
           
 Score =  542 bits (1381), Expect = e-153
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MKNRMILQTIAGIFFVLIIIAVLYYFTSNRERQEIPTGEIFISNYTGYVAGYVNETVSLT 60
           MKNRMILQTIAGIFFVLIIIAVLYYFTSNRERQEIPTGEIFISNYTGYVAGYVNETVSLT
Sbjct: 1   MKNRMILQTIAGIFFVLIIIAVLYYFTSNRERQEIPTGEIFISNYTGYVAGYVNETVSLT 60

Query: 61  VYWLKIGSSNFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMD 120
           VYWLKIGSSNFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMD
Sbjct: 61  VYWLKIGSSNFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMD 120

Query: 121 NAYLEVWQGNSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNPF 180
           NAYLEVWQGNSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNPF
Sbjct: 121 NAYLEVWQGNSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNPF 180

Query: 181 NETVEILNVTFNVPGLKVSSFEPKVIGPGESVNFTVRIVNTSKLNDLYVIKPLIVYQMGN 240
           NETVEILNVTFNVPGLKVSSFEPKVIGPGESVNFTVRIVNTSKLNDLYVIKPLIVYQMGN
Sbjct: 181 NETVEILNVTFNVPGLKVSSFEPKVIGPGESVNFTVRIVNTSKLNDLYVIKPLIVYQMGN 240

Query: 241 KTNIMPLEVFYHATIPDEKRLVEMIKSQTD 270
           KTNIMPLEVFYHATIPDEKRLVEMIKSQTD
Sbjct: 241 KTNIMPLEVFYHATIPDEKRLVEMIKSQTD 270


>pir||A71059 hypothetical protein PH1167 - Pyrococcus horikoshii
           >gi|3257584|dbj|BAA30267.1| (AP000005) 257aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 257
           
 Score =  228 bits (574), Expect = 8e-59
 Identities = 114/250 (45%), Positives = 160/250 (63%), Gaps = 2/250 (0%)

Query: 7   LQTIAGIFFVLIIIAVLYYFTSNRERQEIPTGEIFISNYTGYVAGYVNETVSLTVYWLKI 66
           L  I G+  V  I  + Y    + E Q++ T E  +S Y GYVAGYV+E ++L  Y +  
Sbjct: 5   LTIIVGVVLVFSIF-IAYKPLKSPEPQKVITKEYIVSTYQGYVAGYVDEVIALHAYLITP 63

Query: 67  GSSNFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMDNAYLEV 126
              +F G +G+RNLPPCL+ K + +  Y        + I VTLRLK+ G CIM+  Y+ +
Sbjct: 64  EDQDFRGTVGVRNLPPCLDFKDVGVSKYSYPGATVFDII-VTLRLKEPGHCIMNKTYVVI 122

Query: 127 WQGNSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNPFNETVEI 186
           W+ N  KK+P+G IEF I++ +EE+ L I +++ A +G    VPRLMYTI NPF E VEI
Sbjct: 123 WRNNITKKIPMGIIEFNILEASEEKTLTIPAYVEAFVGSNSLVPRLMYTISNPFEEAVEI 182

Query: 187 LNVTFNVPGLKVSSFEPKVIGPGESVNFTVRIVNTSKLNDLYVIKPLIVYQMGNKTNIMP 246
           +NV+F VPGL++  FEP+ I P   VNFTV + NT+KLN+LY+IKPLIVY++G +   MP
Sbjct: 183 VNVSFRVPGLRIVDFEPREIPPRGVVNFTVTLTNTTKLNNLYIIKPLIVYKVGKEEYRMP 242

Query: 247 LEVFYHATIP 256
               Y+ T+P
Sbjct: 243 APPCYYITLP 252


>pir||H75086 hypothetical protein PAB1649 - Pyrococcus abyssi (strain Orsay)
           >gi|5458509|emb|CAB49997.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 115
           
 Score = 96.0 bits (235), Expect = 4e-19
 Identities = 49/110 (44%), Positives = 72/110 (64%), Gaps = 5/110 (4%)

Query: 70  NFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMDNAYLEVWQG 129
           N S   G+RNLP CLE+K I ++V   +  V    I+V L++K+ G C M++AYL++   
Sbjct: 9   NLSSVFGVRNLPSCLEAKDIGMEVLDNSKAV----ISVALKIKEPGECSMNDAYLDILLE 64

Query: 130 NSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNP 179
           NS  +VPLG++ FEI+ P + R LKI S++ A IG E  +P++MYTI  P
Sbjct: 65  NSSNRVPLGNVTFEILTPGDRR-LKIPSYVEASIGLEAVIPKMMYTIFQP 113


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99348428
Number of Sequences: 2977
Number of extensions: 4258013
Number of successful extensions: 9684
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9679
Number of HSP's gapped (non-prelim): 3
length of query: 270
length of database: 189,106,746
effective HSP length: 55
effective length of query: 215
effective length of database: 156,189,961
effective search space: 33580841615
effective search space used: 33580841615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)