BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1374 (PAB1374) DE:Hypothetical protein
         (251 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75063 hypothetical protein PAB1374 - Pyrococcus abyssi (st...   483  e-136
pir||B71168 hypothetical protein PH0542 - Pyrococcus horikoshii ...   445  e-124

>pir||G75063 hypothetical protein PAB1374 - Pyrococcus abyssi (strain Orsay)
           >gi|5458917|emb|CAB50404.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 251
           
 Score =  483 bits (1230), Expect = e-136
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MSMDEEFDIREALANGEHLEKILIMAKYDEEVLKKLIELLDDDLWTVAKNALSIIMVIAK 60
           MSMDEEFDIREALANGEHLEKILIMAKYDEEVLKKLIELLDDDLWTVAKNALSIIMVIAK
Sbjct: 1   MSMDEEFDIREALANGEHLEKILIMAKYDEEVLKKLIELLDDDLWTVAKNALSIIMVIAK 60

Query: 61  TREELYEPLLKKLFALLKKSEAIPLTQEIAKAFGQMAKEKPELVRSMIPVLFANYRIGDE 120
           TREELYEPLLKKLFALLKKSEAIPLTQEIAKAFGQMAKEKPELVRSMIPVLFANYRIGDE
Sbjct: 61  TREELYEPLLKKLFALLKKSEAIPLTQEIAKAFGQMAKEKPELVRSMIPVLFANYRIGDE 120

Query: 121 KTRINVGYALEEIAKANPMLMANIARDFANMLSSRNREEKLTALNFIEAMGENSFKYVNP 180
           KTRINVGYALEEIAKANPMLMANIARDFANMLSSRNREEKLTALNFIEAMGENSFKYVNP
Sbjct: 121 KTRINVGYALEEIAKANPMLMANIARDFANMLSSRNREEKLTALNFIEAMGENSFKYVNP 180

Query: 181 FLPRIINLLHDEDEIVRASAVEALVHLATLNDKLRKVVIKRLEDLNDTSELVNKVVKEGL 240
           FLPRIINLLHDEDEIVRASAVEALVHLATLNDKLRKVVIKRLEDLNDTSELVNKVVKEGL
Sbjct: 181 FLPRIINLLHDEDEIVRASAVEALVHLATLNDKLRKVVIKRLEDLNDTSELVNKVVKEGL 240

Query: 241 SRLLLLESHSS 251
           SRLLLLESHSS
Sbjct: 241 SRLLLLESHSS 251


>pir||B71168 hypothetical protein PH0542 - Pyrococcus horikoshii
           >gi|3256948|dbj|BAA29631.1| (AP000002) 253aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 253
           
 Score =  445 bits (1132), Expect = e-124
 Identities = 229/252 (90%), Positives = 242/252 (95%), Gaps = 1/252 (0%)

Query: 1   MSMDEE-FDIREALANGEHLEKILIMAKYDEEVLKKLIELLDDDLWTVAKNALSIIMVIA 59
           MSM+EE FDIREALANGEHLEKILIMAKYDE VLKKLIELLDDDLWTV KNA+SIIMVIA
Sbjct: 1   MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60

Query: 60  KTREELYEPLLKKLFALLKKSEAIPLTQEIAKAFGQMAKEKPELVRSMIPVLFANYRIGD 119
           KTRE+LYEP+LKKLF+LLKKSEAIPLTQEIAKAFGQMAKEKPELV+SMIPVLFANYRIGD
Sbjct: 61  KTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120

Query: 120 EKTRINVGYALEEIAKANPMLMANIARDFANMLSSRNREEKLTALNFIEAMGENSFKYVN 179
           EKT+INV YALEEIAKANPMLMA+I RDF +MLSS+NRE+KLTALNFIEAMGENSFKYVN
Sbjct: 121 EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180

Query: 180 PFLPRIINLLHDEDEIVRASAVEALVHLATLNDKLRKVVIKRLEDLNDTSELVNKVVKEG 239
           PFLPRIINLLHD DEIVRASAVEALVHLATLNDKLRKVVIKRLE+LNDTS LVNK VKEG
Sbjct: 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240

Query: 240 LSRLLLLESHSS 251
           +SRLLLLE HSS
Sbjct: 241 ISRLLLLEGHSS 252


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.135    0.356 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80013663
Number of Sequences: 2977
Number of extensions: 2977602
Number of successful extensions: 11355
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11353
Number of HSP's gapped (non-prelim): 2
length of query: 251
length of database: 189,106,746
effective HSP length: 62
effective length of query: 189
effective length of database: 152,000,552
effective search space: 28728104328
effective search space used: 28728104328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)