BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1376 (PAB1376) DE:Hypothetical protein
         (108 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75063 hypothetical protein PAB1376 - Pyrococcus abyssi (st...   221  2e-57
pir||D71168 hypothetical protein PH0544 - Pyrococcus horikoshii ...   221  2e-57
sp|Q58315|Y905_METJA HYPOTHETICAL PROTEIN MJ0905 >gi|2128570|pir...   116  5e-26
emb|CAC12210.1| (AL445066) conserved hypothetical protein [Therm...   107  4e-23

>pir||E75063 hypothetical protein PAB1376 - Pyrococcus abyssi (strain Orsay)
           >gi|5458915|emb|CAB50402.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 108
           
 Score =  221 bits (558), Expect = 2e-57
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR 60
           MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR
Sbjct: 1   MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR 60

Query: 61  YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM 108
           YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM
Sbjct: 61  YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM 108


>pir||D71168 hypothetical protein PH0544 - Pyrococcus horikoshii
           >gi|3256950|dbj|BAA29633.1| (AP000002) 135aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 135
           
 Score =  221 bits (558), Expect = 2e-57
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR 60
           MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR
Sbjct: 28  MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR 87

Query: 61  YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM 108
           YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM
Sbjct: 88  YNGESSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRDYQAYYRKFM 135


>sp|Q58315|Y905_METJA HYPOTHETICAL PROTEIN MJ0905 >gi|2128570|pir||A64413 hypothetical
           protein MJ0905 - Methanococcus jannaschii
           >gi|1499737|gb|AAB98915.1| (U67534) M. jannaschii
           predicted coding region MJ0905 [Methanococcus
           jannaschii]
           Length = 111
           
 Score =  116 bits (289), Expect = 5e-26
 Identities = 55/95 (57%), Positives = 73/95 (75%)

Query: 5   IDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNRYNGE 64
           IDP ++RSL++S+LR++IL  LY++YP   YLSEI+R V SDPSNV G L G+  RYNG 
Sbjct: 6   IDPMIIRSLNKSKLRKKILYLLYKMYPHGIYLSEISRRVRSDPSNVLGCLKGMNGRYNGH 65

Query: 65  SSLVYLGLVEEIRNNGFKYYRLTEYGKKVVEMLRD 99
            SL+ LGLVE +   G K Y+LT+YGKK+VE+L+D
Sbjct: 66  FSLIELGLVECVERGGVKIYKLTDYGKKIVEVLKD 100


>emb|CAC12210.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 118
           
 Score =  107 bits (265), Expect = 4e-23
 Identities = 56/100 (56%), Positives = 74/100 (74%), Gaps = 4/100 (4%)

Query: 1   MPPVIDPHVLRSLHRSELRRRILQYLYEIYPSATYLSEIARVVGSDPSNVRGALVGLGNR 60
           M P++D ++LRSL+RSELRR++L YL  IYP  +YLSEI+R V SDPSNV+G L GLG R
Sbjct: 6   MEPIVDGNILRSLNRSELRRKVLFYLLSIYPYRSYLSEISRAVKSDPSNVKGCLEGLGVR 65

Query: 61  YNGESSLVYLGLV-EEIRNNGFKYYRLTEYGKKVVEMLRD 99
           Y GE SL+ LGLV  E   NGFKY+++     ++VE +R+
Sbjct: 66  YTGEESLIGLGLVIVEQSKNGFKYFKI---NPEIVEEVRN 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40649281
Number of Sequences: 2977
Number of extensions: 1497102
Number of successful extensions: 3553
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3549
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 189,106,746
effective HSP length: 51
effective length of query: 57
effective length of database: 158,583,909
effective search space: 9039282813
effective search space used: 9039282813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)