BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1377 (PAB1377) DE:Hypothetical protein
(320 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75063 hypothetical protein PAB1377 - Pyrococcus abyssi (st... 638 0.0
pir||E71168 hypothetical protein PH0545 - Pyrococcus horikoshii ... 569 e-161
sp|Q58316|Y906_METJA HYPOTHETICAL PROTEIN MJ0906 >gi|2128571|pir... 178 1e-43
>pir||D75063 hypothetical protein PAB1377 - Pyrococcus abyssi (strain Orsay)
>gi|5458914|emb|CAB50401.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 320
Score = 638 bits (1627), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MGVNELIRTIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSYAELLSQIQVPNKPLLK 60
MGVNELIRTIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSYAELLSQIQVPNKPLLK
Sbjct: 1 MGVNELIRTIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSYAELLSQIQVPNKPLLK 60
Query: 61 RLIEHLKALGIIEETPNSLILNGFSYVLTFPKEDYMLLLSDWIPLWEEIYKMIDFALISY 120
RLIEHLKALGIIEETPNSLILNGFSYVLTFPKEDYMLLLSDWIPLWEEIYKMIDFALISY
Sbjct: 61 RLIEHLKALGIIEETPNSLILNGFSYVLTFPKEDYMLLLSDWIPLWEEIYKMIDFALISY 120
Query: 121 DHPYVLMDFDKDADFWDLRLSSSFNKIYRDVIVNLGEINRESYVLDLGCGSVSPSYFGKF 180
DHPYVLMDFDKDADFWDLRLSSSFNKIYRDVIVNLGEINRESYVLDLGCGSVSPSYFGKF
Sbjct: 121 DHPYVLMDFDKDADFWDLRLSSSFNKIYRDVIVNLGEINRESYVLDLGCGSVSPSYFGKF 180
Query: 181 ISEDGKYLGVDYSPGLLEIARQRVEREGLPVELKEMDVSLIKPRTKYDVAIMSFLLEYVK 240
ISEDGKYLGVDYSPGLLEIARQRVEREGLPVELKEMDVSLIKPRTKYDVAIMSFLLEYVK
Sbjct: 181 ISEDGKYLGVDYSPGLLEIARQRVEREGLPVELKEMDVSLIKPRTKYDVAIMSFLLEYVK 240
Query: 241 DRREVLRKVLEALDSGGKLVIVDAFRDEFKNIEAMEFFEGLNSSFVGYPGKEEVKRIILE 300
DRREVLRKVLEALDSGGKLVIVDAFRDEFKNIEAMEFFEGLNSSFVGYPGKEEVKRIILE
Sbjct: 241 DRREVLRKVLEALDSGGKLVIVDAFRDEFKNIEAMEFFEGLNSSFVGYPGKEEVKRIILE 300
Query: 301 EGFDVSFEDYGKSVLLVRKL 320
EGFDVSFEDYGKSVLLVRKL
Sbjct: 301 EGFDVSFEDYGKSVLLVRKL 320
>pir||E71168 hypothetical protein PH0545 - Pyrococcus horikoshii
>gi|3256951|dbj|BAA29634.1| (AP000002) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 569 bits (1451), Expect = e-161
Identities = 274/320 (85%), Positives = 300/320 (93%)
Query: 1 MGVNELIRTIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSYAELLSQIQVPNKPLLK 60
MG+ EL++TIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSY ELLSQI VPNKPLLK
Sbjct: 4 MGIQELVKTIDTNINHMISLSVLNLAQLGIKYGIFKAVASRPSYEELLSQIPVPNKPLLK 63
Query: 61 RLIEHLKALGIIEETPNSLILNGFSYVLTFPKEDYMLLLSDWIPLWEEIYKMIDFALISY 120
+LIEHLKALGIIEETP++LILNGFSYVL FPKEDYMLLLSDWIP+WEEIYKM+DFALISY
Sbjct: 64 KLIEHLKALGIIEETPSNLILNGFSYVLKFPKEDYMLLLSDWIPIWEEIYKMVDFALISY 123
Query: 121 DHPYVLMDFDKDADFWDLRLSSSFNKIYRDVIVNLGEINRESYVLDLGCGSVSPSYFGKF 180
HPYVLMDFDKDADFWD+RLSSSFNK YRD I+NLGEI +SY+LDLGCGSVSP+YFGKF
Sbjct: 124 SHPYVLMDFDKDADFWDIRLSSSFNKTYRDAIINLGEIREDSYILDLGCGSVSPAYFGKF 183
Query: 181 ISEDGKYLGVDYSPGLLEIARQRVEREGLPVELKEMDVSLIKPRTKYDVAIMSFLLEYVK 240
ISEDGKY+GVDYSPGLLEIAR+RVER GLP ELKEMDVSLI+ R+KYDVAIMSFLLEYV+
Sbjct: 184 ISEDGKYVGVDYSPGLLEIARERVERNGLPAELKEMDVSLIRTRSKYDVAIMSFLLEYVR 243
Query: 241 DRREVLRKVLEALDSGGKLVIVDAFRDEFKNIEAMEFFEGLNSSFVGYPGKEEVKRIILE 300
DR EVL KVLEALDSGGKL+IV+AFRDEF+NI+AMEFFE LN SFVGYP K E+K+ IL
Sbjct: 244 DREEVLGKVLEALDSGGKLIIVEAFRDEFENIQAMEFFESLNRSFVGYPAKAEIKKAILR 303
Query: 301 EGFDVSFEDYGKSVLLVRKL 320
EGFDVSFEDYGKS+L+VRKL
Sbjct: 304 EGFDVSFEDYGKSILVVRKL 323
>sp|Q58316|Y906_METJA HYPOTHETICAL PROTEIN MJ0906 >gi|2128571|pir||B64413 hypothetical
protein MJ0906 - Methanococcus jannaschii
>gi|1499738|gb|AAB98916.1| (U67534) M. jannaschii
predicted coding region MJ0906 [Methanococcus
jannaschii]
Length = 366
Score = 178 bits (446), Expect = 1e-43
Identities = 105/320 (32%), Positives = 175/320 (53%), Gaps = 8/320 (2%)
Query: 7 IRTIDTNINHMISLSVLNLAQLGIKYGIFKAVAS-RPSYAELLSQIQVPNKPLLKRLIEH 65
I ID I ++ ++ + G+++GIF +A P ++ ++ PNK + I+
Sbjct: 49 IEMIDNTIEYLSYELLVTFIKHGVEFGIFPIIAKYSPKIDDIPLLVKYPNKQFILDYIKT 108
Query: 66 LKALGIIEETPNSLILN-GFSYVLTFPKEDYMLLLSDWIPLWEEIYKMIDFALISYDHPY 124
L I++ + +N F + PK D ++SD++ + I + +ALISY HP
Sbjct: 109 ALKLEILKYEDEKIKINEDFELNIKMPKFDK--IISDYVMKYNFITHVSRYALISYSHPK 166
Query: 125 VLMDFDKDADFWDLRLSSSFNKIYRDVIVNLGEINRESYVLDLGCGSVSPSYFGKFISED 184
+ + F KD D WD+ LSS + + R++ + +I++ Y+LD+GCGS SP YF I +
Sbjct: 167 IAISFKKDPDIWDMILSSPYYSLCREIASDYLKIDKGDYILDVGCGSRSPKYFIDMIYPE 226
Query: 185 GKYLGVDYSPGLLEIARQRVEREGL-PVELKEMDVSLIKPRTKYDVAIMSFLLEYVKDRR 243
G Y+GVD S GLL+IA R++R ELK +D + I P+ KYD I S + Y +
Sbjct: 227 GHYMGVDISKGLLQIAECRIKRLYCDSYELKNIDFTKIIPKEKYDYIICSHTMIYAPSLK 286
Query: 244 EVLRKVLEALDSGGKLVIVDAF-RDEFKNI--EAMEFFEGLNSSFVGYPGKEEVKRIILE 300
+ L K++ ++ SGGK+ I + F D+ +NI E EF+ LN F GY ++++ I+
Sbjct: 287 QFLNKMMSSIHSGGKIFISEEFILDKNENICKEVFEFYNRLNKRFRGYYSEKDIVDILES 346
Query: 301 EGFDVSFEDYGKSVLLVRKL 320
G+D E G +L++ K+
Sbjct: 347 LGYDFKIESLGNGILVIEKI 366
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.143 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118055778
Number of Sequences: 2977
Number of extensions: 5065697
Number of successful extensions: 12981
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12976
Number of HSP's gapped (non-prelim): 3
length of query: 320
length of database: 189,106,746
effective HSP length: 55
effective length of query: 265
effective length of database: 156,189,961
effective search space: 41390339665
effective search space used: 41390339665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)