BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1378 (flaB2) DE:FLAGELLIN B2 PRECURSOR.
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi ... 344 3e-94
sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64... 93 2e-18
sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27... 92 4e-18
sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A2894... 92 5e-18
sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316... 90 1e-17
sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64... 90 2e-17
sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||... 90 2e-17
sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C4131... 89 4e-17
sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B4131... 89 4e-17
pir||E64411 flagellin B3 precursor - Methanococcus jannaschii >g... 89 4e-17
sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR 89 4e-17
sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27... 88 7e-17
sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D2894... 87 2e-16
sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27... 87 2e-16
pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (s... 87 2e-16
dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis] 85 4e-16
sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||... 85 6e-16
dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis] 83 2e-15
sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B2894... 82 3e-15
sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||... 82 4e-15
sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||... 82 5e-15
sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C2894... 80 1e-14
sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E2894... 80 2e-14
sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||... 80 2e-14
emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii] 80 2e-14
sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X... 79 3e-14
dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis] 79 3e-14
dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis] 79 3e-14
pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (s... 77 1e-13
dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis] 76 2e-13
sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D4131... 75 7e-13
gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Haloba... 73 3e-12
emb|CAC11693.1| (AL445064) flagellin B precursor related protein... 72 3e-12
emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii] 72 4e-12
emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii] 71 6e-12
emb|CAC12527.1| (AL445067) flagellin B3 precursor related protei... 71 1e-11
sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA1... 68 9e-11
>pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi (strain Orsay)
>gi|5458913|emb|CAB50400.1| (AJ248287) FLAGELLIN B2
PRECURSOR. [Pyrococcus abyssi]
Length = 175
Score = 344 bits (874), Expect = 3e-94
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MKNLQGGAWQMARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQ 60
MKNLQGGAWQMARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQ
Sbjct: 1 MKNLQGGAWQMARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQ 60
Query: 61 VSTGFILKDAYVTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAKP 120
VSTGFILKDAYVTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAKP
Sbjct: 61 VSTGFILKDAYVTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAKP 120
Query: 121 LVGEINGDIVQPGSTILITFNMSEGWTVARGEIVPNVGSPTPFTVTKDLDSVPSS 175
LVGEINGDIVQPGSTILITFNMSEGWTVARGEIVPNVGSPTPFTVTKDLDSVPSS
Sbjct: 121 LVGEINGDIVQPGSTILITFNMSEGWTVARGEIVPNVGSPTPFTVTKDLDSVPSS 175
>sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64411 flagellin B2
precursor - Methanococcus jannaschii
>gi|1591570|gb|AAB98895.1| (U67533) flagellin B2 (flaB2)
[Methanococcus jannaschii]
Length = 217
Score = 93.2 bits (228), Expect = 2e-18
Identities = 69/195 (35%), Positives = 96/195 (48%), Gaps = 43/195 (22%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
+RGA+GIGTLI+FIAMVLVAAVAAAVLINTSGFLQ +A GKE T QV++G L V
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASG--LSTLQV 67
Query: 73 TG------TNTINLLVTLPTGSYPVDISRT-VIIVNGKQ-------------LTYGSTAN 112
G N + + +T GS +D+++T ++I +G++ LT G
Sbjct: 68 IGIHDNKAINYLAIYITPNAGSAAIDLNQTKILITDGEKKAVLRYNSNAYADLTTGGEVT 127
Query: 113 TTNFSAKPLVGEING---------------DIVQPGSTILITFNMSE------GWTVARG 151
T+ +A L G G ++ G + +T N S T G
Sbjct: 128 NTSLAAWNLSGGEFGIIVLQDADGSCKSTTPVINKGDIVALTINASAVGLNLVPRTTVTG 187
Query: 152 EIVPNVGSPTPFTVT 166
++P G+P T
Sbjct: 188 SVIPEFGAPAVIEFT 202
>sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27727.1| (U76620) FlaB3
[Methanococcus vannielii]
Length = 207
Score = 92.1 bits (225), Expect = 4e-18
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 32/182 (17%)
Query: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDA 70
M ++GA+GIGTLI+FIAMVLVAAVAA+V+INT+G LQ +AS VG+E T+QV++G +
Sbjct: 7 MDKKGAVGIGTLIIFIAMVLVAAVAASVIINTAGNLQHKASAVGQESTKQVASGLQVMRV 66
Query: 71 YVTGTNTINL--------------------LVTLPTG----SYPVDISRTVIIVNGKQLT 106
+N L +VTL G S+ D ++ ++ NG
Sbjct: 67 VGHASNKTQLDKIGAIVTPNVGGEIDLSTSIVTLSDGSAKHSFVYDSTKHKLVDNGSDSL 126
Query: 107 YGSTANTTNFSAKPLVGEINGDIVQP-------GSTILITFNMS-EGWTVARGEIVPNVG 158
+ T T N+ ++ + +G P G +++T M+ T GE++P G
Sbjct: 127 FNETWATGNYFGVLVLQDSDGSASVPDNPTINYGDKVILTLEMNINATTKVSGEVIPEYG 186
Query: 159 SP 160
SP
Sbjct: 187 SP 188
>sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A28944 flagellin A1 precursor
[validated] - Halobacterium salinarum
>gi|148763|gb|AAA72641.1| (M19883) flagellin A1
[Halobacterium halobium] >gi|10580564|gb|AAG19424.1|
(AE005036) flagellin A1 precursor; FlaA1a [Halobacterium
sp. NRC-1]
Length = 196
Score = 91.7 bits (224), Expect = 5e-18
Identities = 59/130 (45%), Positives = 82/130 (62%), Gaps = 14/130 (10%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY-- 71
RG +GIGTLIVFIAMVLVAA+AA VLINT+GFLQ++ S G+E + QVS + AY
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 72 ---VTGTNTI---NLLVTLPTGSYPVDISRTVIIVNGKQ----LTY-GSTANTTNFSAKP 120
+GT+T+ NL V G+ +++S++ I G LTY GSTA+ NF+ +
Sbjct: 71 VKTASGTDTVDYANLTVRQAAGADNINLSKSTIQWIGPDTATTLTYDGSTADAENFTTES 130
Query: 121 LVGEINGDIV 130
+ G N D++
Sbjct: 131 IKGN-NADVL 139
>sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316 flagellin A precursor -
Methanococcus voltae >gi|150061|gb|AAA73073.1| (M72148)
flagellin [Methanococcus voltae]
Length = 219
Score = 90.5 bits (221), Expect = 1e-17
Identities = 52/95 (54%), Positives = 66/95 (68%), Gaps = 8/95 (8%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
++GA G+GTLIVFIAMVLVAAVAA+VLINTSGFLQ +AS+ G E T QVSTG LK
Sbjct: 10 KKGATGVGTLIVFIAMVLVAAVAASVLINTSGFLQQKASSTGTESTEQVSTG--LKMFQT 67
Query: 73 TG------TNTINLLVTLPTGSYPVDISRTVIIVN 101
+G + + + VT GS PVD+ T +++N
Sbjct: 68 SGKLNEPIIDRLTIYVTPSPGSKPVDLKNTKLLMN 102
>sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64411 flagellin B1
precursor - Methanococcus jannaschii
>gi|1591569|gb|AAB98894.1| (U67533) flagellin B1 (flaB1)
[Methanococcus jannaschii]
Length = 217
Score = 89.7 bits (219), Expect = 2e-17
Identities = 51/111 (45%), Positives = 69/111 (61%), Gaps = 11/111 (9%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFIL----- 67
+RGA+GIGTLI+FIAMVLVAAVAAAVLINTSGFLQ +A GKE T QV++G +
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLMCIGVTG 69
Query: 68 -KDAYVTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFS 117
D + G + + + +T GS P+D+ + L Y ++ N+S
Sbjct: 70 HYDKTLGGIDKLAIYITPNAGSAPIDLKNAKLF-----LIYDGESHVLNYS 115
>sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||F71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256952|dbj|BAA29635.1| (AP000002) 237aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 237
Score = 89.7 bits (219), Expect = 2e-17
Identities = 59/132 (44%), Positives = 85/132 (63%), Gaps = 15/132 (11%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY- 71
R+GA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ +AS G+E T++V++G +
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASGTGRETTQEVASGIKVDRVVG 65
Query: 72 ----VTGTNT-INLLVTLPTGSYPVDISRT-VIIVNGKQ-------LTYGSTANTTNFSA 118
+TG T + + ++ GS +D+++ VI+ NG++ Y +T++T + A
Sbjct: 66 YAPDITGDITRLAVYISPNAGSSGIDLNKVRVILSNGQKEVSLKYNYVYNATSSTQTYVA 125
Query: 119 KPLVGEINGDIV 130
P G I DIV
Sbjct: 126 LP-QGNIFNDIV 136
>sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C41316 flagellin B2 precursor
- Methanococcus voltae >gi|150063|gb|AAA73075.1|
(M72148) flagellin [Methanococcus voltae]
Length = 216
Score = 88.5 bits (216), Expect = 4e-17
Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 16/170 (9%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
++GA GIGTLIVFIAMVLVAAVAA+VLINTSGFLQ +AST GKE T QV++G +
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLQISQVMG 69
Query: 73 TGTNT-IN---LLVTLPTGSYPVDISRTVIIV----NGKQLTYGSTANTTNFSAKPLVGE 124
N+ IN + ++ GS +D+S+ VI++ N + Y ++ + +
Sbjct: 70 MHNNSNINKTAIYISPNAGSSAIDLSQAVIMLSDGSNKRVYKYNESSYKDLTNGGDIFDN 129
Query: 125 INGDIVQPGST---ILITFNMSEGWTVA-----RGEIVPNVGSPTPFTVT 166
N + ++ +T I++ + E T A +G++V + T F+ T
Sbjct: 130 ANVEWIKATATKFGIVVIQDADESCTAANPVINKGDLVAITLNTTSFSTT 179
>sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B41316 flagellin B1 precursor
- Methanococcus voltae >gi|150062|gb|AAA73074.1|
(M72148) flagellin [Methanococcus voltae]
Length = 218
Score = 88.5 bits (216), Expect = 4e-17
Identities = 53/96 (55%), Positives = 66/96 (68%), Gaps = 10/96 (10%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
++GA GIGTLIVFIAMVLVAAVAA+VLINTSGFLQ +AST GKE T QV++G L+ V
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASG--LQVTGV 67
Query: 73 TGTNT--------INLLVTLPTGSYPVDISRTVIIV 100
TG N+ I +T GS +D+S+ + V
Sbjct: 68 TGVNSTDSENITHIVAYITPKAGSSAIDLSQAKLFV 103
>pir||E64411 flagellin B3 precursor - Methanococcus jannaschii
>gi|1591571|gb|AAB98896.1| (U67533) flagellin B3 (flaB3)
[Methanococcus jannaschii]
Length = 223
Score = 88.5 bits (216), Expect = 4e-17
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 14/116 (12%)
Query: 12 ARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGF-ILK-D 69
+RRGAIGIGTLI+FIA+VLVAAVAAAV+INT+ LQ +A+ VG+E TRQV++G +LK
Sbjct: 15 SRRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKIT 74
Query: 70 AYVTGTNTINLLVTL--PTGSYPVDISRTVI----------IVNGKQLTYGSTANT 113
Y T I L L P +D+S T++ +V G Q+TY +T T
Sbjct: 75 GYAVNTKNITKLAILVSPNVGDEIDLSSTIVTISNGDYKASLVYGGQITYVNTNGT 130
>sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR
Length = 216
Score = 88.5 bits (216), Expect = 4e-17
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 14/116 (12%)
Query: 12 ARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGF-ILK-D 69
+RRGAIGIGTLI+FIA+VLVAAVAAAV+INT+ LQ +A+ VG+E TRQV++G +LK
Sbjct: 8 SRRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKIT 67
Query: 70 AYVTGTNTINLLVTL--PTGSYPVDISRTVI----------IVNGKQLTYGSTANT 113
Y T I L L P +D+S T++ +V G Q+TY +T T
Sbjct: 68 GYAVNTKNITKLAILVSPNVGDEIDLSSTIVTISNGDYKASLVYGGQITYVNTNGT 123
>sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27726.1| (U76620) FlaB2
[Methanococcus vannielii]
Length = 222
Score = 87.8 bits (214), Expect = 7e-17
Identities = 54/117 (46%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGF-ILKDAY 71
++GA GIGTLIVFIAMVLVAAVAA+VLINTSGFLQ +A+T GKE T QV++G +L+
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVLQIMG 69
Query: 72 VTGTNTINLL---VTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAKPLVGEI 125
V ++ I L + GS VD+S++V+ ++ + +TT+ +A G +
Sbjct: 70 VHDSSNITKLAVYIAPNAGSSAVDLSQSVVTLSNGDVKSIFKYDTTDAAADKSYGAV 126
>sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D28944 flagellin B2 precursor
[validated] - Halobacterium salinarum
>gi|148767|gb|AAA72644.1| (M19884) flagellin B2
[Halobacterium halobium]
Length = 196
Score = 86.6 bits (211), Expect = 2e-16
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 13/144 (9%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY-- 71
RG +GIGTLIVFIAMVLVAA+AA VLINT+G+LQ++ S G+E + QVS + AY
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 72 --VTGT----NTINLLVTLPTGSYPVDISRTVIIVNGKQ----LTY-GSTANTTNFSAKP 120
+G+ N NL V G+ +++S++ I G LTY G+TA+ NF+
Sbjct: 71 VDTSGSTEVVNYANLTVRQAAGADNINLSKSTIQWIGPDTATTLTYDGTTADAENFTTNS 130
Query: 121 LVGEINGDIVQPGSTILITFNMSE 144
+ G+ +V I I + +E
Sbjct: 131 IKGDNADVLVDQSDRIEIVMDAAE 154
>sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27725.1| (U76620) FlaB1
[Methanococcus vannielii]
Length = 215
Score = 86.6 bits (211), Expect = 2e-16
Identities = 50/95 (52%), Positives = 65/95 (67%), Gaps = 7/95 (7%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILK--DA 70
++G GIGTLIVFIAMVLVAAVAA+VLINTSGFLQ +A+T GKE T QV++G + +
Sbjct: 10 KKGDSGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVMGVNG 69
Query: 71 YVTGTNTIN-----LLVTLPTGSYPVDISRTVIIV 100
Y GTN N + VT GS +D++ + + V
Sbjct: 70 YQDGTNDANVSKMAIYVTPNAGSSAIDLTNSKLFV 104
>pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (strain Orsay)
>gi|5458911|emb|CAB50398.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 222
Score = 86.6 bits (211), Expect = 2e-16
Identities = 63/143 (44%), Positives = 79/143 (55%), Gaps = 19/143 (13%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY- 71
RRGAIGIGTLIVFIAMVLVAAVAA VLI+TSG+LQ RA +VG E TR VS+G + +
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
Query: 72 -----VTGTNTIN-------LLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAK 119
TG TI + + GS P+++++T II LT ST F +
Sbjct: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRII-----LTVKSTMVIFTFGGE 116
Query: 120 PLVGE-INGDIVQPGSTILITFN 141
V + NG + TI N
Sbjct: 117 DTVADWTNGAVNVFNETIWENIN 139
>dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis]
Length = 580
Score = 85.4 bits (208), Expect = 4e-16
Identities = 71/182 (39%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGF-ILK- 68
+ +RGA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ +AS+ G+E T++V++G I+K
Sbjct: 5 LKKRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASSTGRETTQEVASGLKIMKV 64
Query: 69 ------DAYVTG-TNTINLLVTLPTGSYPVDISRT-VIIVNG-KQLTY-------GSTAN 112
D +G + + V+ GS +D+ + VI+ NG KQ Y G+ +
Sbjct: 65 IGYDPADPPASGKIERLAVYVSPNAGSSGIDMKKVRVILSNGDKQAIYNYYVPESGTFVS 124
Query: 113 TTNFSAKPLVGEINGDIVQPG------STILITFNMSEGWTVARGEIVPNVGSPTPFTVT 166
T + K D G + + I F+ S T+A G N S FT+T
Sbjct: 125 ETPTTLKLAFATSEPDWTSGGTGLDFSAGLKIVFDASGSLTIADGN--GNSVSINRFTIT 182
Query: 167 KD 168
D
Sbjct: 183 TD 184
>sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||H71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256954|dbj|BAA29637.1| (AP000002) 207aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 207
Score = 84.7 bits (206), Expect = 6e-16
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKD--A 70
RRGA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ ++ G++ T++V++G +
Sbjct: 2 RRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASGIKVTSVIG 61
Query: 71 YVTGTNT----INLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNF 116
+V TN + + V+ GS +D+ T I++ K N +N+
Sbjct: 62 HVDTTNNAIDKLAIYVSPNAGSEGIDLRYTKIVLRSKSQEVSLYYNRSNY 111
>dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis]
Length = 275
Score = 83.1 bits (202), Expect = 2e-15
Identities = 55/130 (42%), Positives = 77/130 (58%), Gaps = 13/130 (10%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY- 71
RRGAIGIGTLIVFIAMVLVAAVAA VLI+TSG+LQ +A + G++ T++V++G + + Y
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQKAMSAGRQTTQEVASGIKVLNVYG 61
Query: 72 -----VTGTNTIN---LLVTLPTGSYPVDISRT-VIIVNGKQLT---YGSTANTTNFSAK 119
G + I L V+ GS +D++ V+I +GK++ Y N +
Sbjct: 62 YINGSTPGAHNITRLVLYVSPNAGSGGIDLAHVKVVISDGKRMAVYRYYDPNEDKNSDIQ 121
Query: 120 PLVGEINGDI 129
P GDI
Sbjct: 122 PAYIHYTGDI 131
>sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B28944 flagellin A2 precursor
[validated] - Halobacterium salinarum
>gi|148764|gb|AAA72642.1| (M19883) flagellin A2
[Halobacterium halobium]
Length = 194
Score = 82.3 bits (200), Expect = 3e-15
Identities = 54/137 (39%), Positives = 77/137 (55%), Gaps = 12/137 (8%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYVT 73
RG +GIGTLIVFIAMVLVAA+AA VLINT+GFLQ++ S G+E + QVS + AY
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 74 GTNT----INLLVTLPTGSYPVDISRTVIIVNGKQ----LTYGSTANTT----NFSAKPL 121
N +NL V G+ +++S++ I G LT+ + A+ T F+ +
Sbjct: 71 VNNEEVDYVNLTVRQAAGADNINLSKSTIQWIGPDKATTLTHANAADKTTLGEEFNTTSI 130
Query: 122 VGEINGDIVQPGSTILI 138
G + +VQ I +
Sbjct: 131 KGNNDNVLVQQSDRIKV 147
>sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||A71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256955|dbj|BAA29638.1| (AP000002) 334aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 334
Score = 81.9 bits (199), Expect = 4e-15
Identities = 60/175 (34%), Positives = 98/175 (55%), Gaps = 20/175 (11%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
++GA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ ++ G++ T++V++G +K V
Sbjct: 2 KKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASG--IKVTRV 59
Query: 73 TG-----TN-----TINLLVTLPTGSYPVDISRTVIIVNGKQ------LTYGSTANTTNF 116
G TN + + +T GS +D+++ I ++ Q G++AN F
Sbjct: 60 VGKADSATNPTYIQELAVYITPNAGSSGIDLTKVRITLSDGQKQAIFKYRVGNSANELYF 119
Query: 117 SAKPLVGEINGDIVQPGSTILITFNMSEGWTVARGEIVPNVGSPTPFTVTKDLDS 171
A+ L+ + I ++ + F+ ++ WT A ++ + + V +DS
Sbjct: 120 LAE-LMQNLGATIKFDNGSVQVYFDPTD-WTSAAPTVIIDTTNKVIEIVNATVDS 172
>sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||B71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256956|dbj|BAA29639.1| (AP000002) 214aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 214
Score = 81.5 bits (198), Expect = 5e-15
Identities = 47/103 (45%), Positives = 69/103 (66%), Gaps = 10/103 (9%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKD--A 70
R+GAIGIGTLIVFIAMVLVAAVAA V+I T+G+LQ +A G++ T++V++G + +
Sbjct: 2 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQAAGRQTTQEVASGIKIVNVFG 61
Query: 71 YVTGTNTIN-------LLVTLPTGSYPVDISRT-VIIVNGKQL 105
Y+ T N +LVT GS +D+S +++ +GK+L
Sbjct: 62 YINATPPSNGTIVKMAILVTPNAGSSGIDLSNVKIVLSDGKRL 104
>sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C28944 flagellin B1 precursor
[validated] - Halobacterium salinarum
>gi|148766|gb|AAA72643.1| (M19884) flagellin B1
[Halobacterium halobium] >gi|10580517|gb|AAG19383.1|
(AE005033) flagellin B1 precursor; FlaB1 [Halobacterium
sp. NRC-1]
Length = 193
Score = 80.4 bits (195), Expect = 1e-14
Identities = 52/136 (38%), Positives = 77/136 (56%), Gaps = 11/136 (8%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYVT 73
RG +GIGTLIVFIAMVLVAA+AA VLINT+G+LQ++ S G+E + QVS + AY
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 74 GTNT----INLLVTLPTGSYPVDISRTVIIVNGKQ----LTYGSTANTT---NFSAKPLV 122
N +NL V G+ ++++++ I G LTY S + ++ NF+ + +
Sbjct: 71 VNNEKVDYVNLTVRQAAGADNINLTKSTIQWIGPDRATTLTYSSNSPSSLGENFTTESIK 130
Query: 123 GEINGDIVQPGSTILI 138
G +V I +
Sbjct: 131 GSSADVLVDQSDRIKV 146
>sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E28944 flagellin B3 precursor
[validated] - Halobacterium salinarum
>gi|148768|gb|AAA72645.1| (M19884) flagellin B3
[Halobacterium halobium]
Length = 193
Score = 80.0 bits (194), Expect = 2e-14
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 14/154 (9%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY-- 71
RG +GIGTLIVFIAMVLVAA+AA VLINT+G+LQ++ S G+E + QVS + AY
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 72 --VTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQ----LTYGSTANTT---NFSAKPLV 122
+ +NL V G+ ++++++ I G LTY S + ++ NF+ + +
Sbjct: 71 VNSEKVDYVNLTVRQAAGADNINLTKSTIQWIGPDKATTLTYSSNSPSSLGENFTTESIK 130
Query: 123 GEINGDIV--QPGSTILITFNMSEGWTVARGEIV 154
G N D++ Q +I + T+ GE V
Sbjct: 131 GN-NADVLVEQSDRIKVIMYASGVSSTLGSGEEV 163
>sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||C71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256957|dbj|BAA29640.1| (AP000002) 255aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 255
Score = 80.0 bits (194), Expect = 2e-14
Identities = 49/103 (47%), Positives = 67/103 (64%), Gaps = 10/103 (9%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY- 71
RRGAIGIGTLIVFIAMVLVAAVAA VLI TSG+LQ +A G++ T++V++G + Y
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLITTSGYLQQKAMATGRQTTQEVASGIRVSGIYG 61
Query: 72 -----VTGTNTINLLVTLPT---GSYPVDISRT-VIIVNGKQL 105
G+ I LV T GS +D++ V++ +GK++
Sbjct: 62 YTPSNPPGSGKITRLVVYVTPNAGSGGIDLAHVRVVLSDGKRM 104
>emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii]
Length = 201
Score = 80.0 bits (194), Expect = 2e-14
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 8/91 (8%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVS--------TGF 65
RG +GIGTLIVFIAMVLVAA+AA VLINT+G LQT+A G+E T QVS +G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVSDRLDIVSVSGD 69
Query: 66 ILKDAYVTGTNTINLLVTLPTGSYPVDISRT 96
+ T N I+++ GS PVD+++T
Sbjct: 70 VDDPDDPTQINNISMVTATAPGSDPVDLNQT 100
>sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X05383) flagellin
[Halobacterium salinarum]
Length = 181
Score = 79.2 bits (192), Expect = 3e-14
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 13/139 (9%)
Query: 19 IGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY----VTG 74
IGTLIVFIAMVLVAA+AA VLINT+G+LQ++ S G+E + QVS + AY +G
Sbjct: 1 IGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGNVDTSG 60
Query: 75 T----NTINLLVTLPTGSYPVDISRTVIIVNGKQ----LTY-GSTANTTNFSAKPLVGEI 125
+ N NL V G+ +++S++ I G LTY G+TA+ NF+ + G+
Sbjct: 61 STEVVNYANLTVRQAAGADNINLSKSTIQWIGPDTATTLTYDGTTADAENFTTNSIKGDN 120
Query: 126 NGDIVQPGSTILITFNMSE 144
+V I I + +E
Sbjct: 121 ADVLVDQSDRIEIVMDAAE 139
>dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis]
Length = 294
Score = 79.2 bits (192), Expect = 3e-14
Identities = 52/111 (46%), Positives = 71/111 (63%), Gaps = 21/111 (18%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
R+GA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ ++ G+E T++V++G +K V
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRETTQEVASG--IKVERV 63
Query: 73 TG------TN------------TINLLVTLPTGSYPVDISRT-VIIVNGKQ 104
G TN + + V+ GS +D+S T VI+ NG++
Sbjct: 64 VGKTDLPYTNIGSDSTELDYIRQLAIYVSPNAGSSGIDLSNTKVILSNGEK 114
>dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis]
Length = 219
Score = 78.8 bits (191), Expect = 3e-14
Identities = 45/105 (42%), Positives = 69/105 (64%), Gaps = 10/105 (9%)
Query: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDA 70
M RRGAIGIGTLIVFIAMVLVAAVAA V+I T+G+L+ +A G++ T++V++G + +
Sbjct: 1 MRRRGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLEQKAQAAGRQTTQEVASGIKVLNV 60
Query: 71 Y--------VTGT-NTINLLVTLPTGSYPVDISRT-VIIVNGKQL 105
Y GT + + +T GS +D+S +++ +G++L
Sbjct: 61 YGYTNATPPSNGTIERMAIFITPNAGSEGIDLSNVKIVLSDGRRL 105
>pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (strain Orsay)
>gi|5458912|emb|CAB50399.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 219
Score = 77.3 bits (187), Expect = 1e-13
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 10/105 (9%)
Query: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDA 70
M R+GAIGIGTLIVFIAMVLVAAVAA V+I T+G+LQ +A G + T++VS+G + +
Sbjct: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
Query: 71 Y------VTGTNTIN---LLVTLPTGSYPVDISRT-VIIVNGKQL 105
Y V TI + V+ GS + +S +++ +GK+L
Sbjct: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKL 105
>dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis]
Length = 258
Score = 76.5 bits (185), Expect = 2e-13
Identities = 36/54 (66%), Positives = 48/54 (88%)
Query: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTG 64
+ +RGA+GIGTLIVFIAMVLVAAVAAAVLINTSG+LQ ++ + G++ T +V++G
Sbjct: 4 LKKRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQSTGRQTTEEVASG 57
>sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D41316 flagellin B3
precursor - Methanococcus voltae
>gi|150064|gb|AAA73076.1| (M72148) flagellin
[Methanococcus voltae]
Length = 239
Score = 74.5 bits (180), Expect = 7e-13
Identities = 43/92 (46%), Positives = 66/92 (71%), Gaps = 8/92 (8%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
++GA+GIGTLI+FIA+VLVAAVAA+V+INT+G LQ +A+ VG+E T+QV++G L+ +
Sbjct: 9 KKGAVGIGTLIIFIALVLVAAVAASVIINTAGKLQHKAAVVGQETTQQVASG--LQVVKI 66
Query: 73 TG--TNTINL----LVTLPTGSYPVDISRTVI 98
TG + NL ++ P +D++ TV+
Sbjct: 67 TGHSVDQYNLDKIAILVSPNIGDEIDLATTVV 98
>gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Halobacterium sp. NRC-1]
Length = 207
Score = 72.6 bits (175), Expect = 3e-12
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYV 72
RRG +GIGTL+VF+AM+LVAA+AA+ L++ G LQ+R G+E QV+ G + A+
Sbjct: 5 RRGQVGIGTLVVFMAMILVAAMAASTLVDIGGMLQSRGDATGEEAVGQVTNGVSVTGAFG 64
Query: 73 TGTNT------------INLLVTLPTGSYPVDISR-TVIIVNGKQLTYGS----TANTTN 115
T TN I ++V GS V++S TV V +Q T S TAN++
Sbjct: 65 TITNATDDPFTDGTVSDIEIVVGQSAGSGNVNVSDVTVDWVGPRQATTLSWTDGTANSSR 124
Query: 116 FSAKPLVG 123
F+ + G
Sbjct: 125 FTTRKATG 132
>emb|CAC11693.1| (AL445064) flagellin B precursor related protein [Thermoplasma
acidophilum]
Length = 240
Score = 72.2 bits (174), Expect = 3e-12
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 14/126 (11%)
Query: 18 GIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYVTGTNT 77
GIGTLIVFIAMVLVAAVAA VLI+T+G LQ +A++ G + T+QVSTG + Y +N
Sbjct: 16 GIGTLIVFIAMVLVAAVAATVLIHTAGTLQQKATSTGSQTTQQVSTGIQVTSIYGLDSNA 75
Query: 78 ----------INLLVTLPTGSYPVDISRTVIIVN----GKQLTYGSTANTTNFSAKPLVG 123
+ + +T+ GS ++++ I + LTY N N ++ V
Sbjct: 76 TYPTHGIIKWLAIQITVTAGSSSINLANVTISMTYHGVAASLTYVGLENIGNATSPKNVY 135
Query: 124 EINGDI 129
N +
Sbjct: 136 GFNSAV 141
>emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii]
Length = 395
Score = 71.8 bits (173), Expect = 4e-12
Identities = 36/49 (73%), Positives = 41/49 (83%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVS 62
RG +GIGTLIVFIAMVLVAA+AA VLINT+G LQT+A G+E T QVS
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVS 58
>emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii]
Length = 261
Score = 71.4 bits (172), Expect = 6e-12
Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGF-------I 66
RG +GIGTLIVFIAMVLVAA+AA VLINT+G LQ++A G+E T VS I
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQSQAEATGEESTDLVSERIDSTTAVGI 69
Query: 67 LKDAYVT--------GTNTINLLVTLPTGSYPVDISRTVIIVNGKQ 104
+ + V+ I L V+ GS +D+S T+I V G Q
Sbjct: 70 VSETEVSEEAGADRGELEEIRLGVSGAAGSDNIDLSETIIQVVGPQ 115
>emb|CAC12527.1| (AL445067) flagellin B3 precursor related protein [Thermoplasma
acidophilum]
Length = 263
Score = 70.6 bits (170), Expect = 1e-11
Identities = 43/108 (39%), Positives = 63/108 (57%), Gaps = 9/108 (8%)
Query: 18 GIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY------ 71
GIG LIVFIAM+LVAAVAA+VLI+T+G LQ +AS+ G +QV++G ++
Sbjct: 51 GIGVLIVFIAMILVAAVAASVLIHTAGILQQKASSTGTTTIQQVASGVVITQILGYDYAN 110
Query: 72 ---VTGTNTINLLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNF 116
G + + + VT+ +G VD+S T I ++ T NT+ F
Sbjct: 111 PPEAGGISYLAIFVTINSGGSSVDLSNTTITLSVGGTTAVLVYNTSIF 158
>sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA12418.1| (AJ225175) FlaB2
protein [Natrialba magadii] >gi|8250515|emb|CAB93656.1|
(AJ277988) flagellin subunit 2 [Natrialba magadii]
Length = 259
Score = 67.5 bits (162), Expect = 9e-11
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Query: 14 RGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAYVT 73
RG +GIGTLIVFIAMVLVAA+AA VL+NT+G LQ++A G+E T VS A T
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLMNTAGMLQSQAEATGEESTDLVSERIDTTIAVGT 69
Query: 74 GTN---------------TINLLVTLPTGSYPVDISRTVIIVNGKQ 104
+ I++ VT G+ +D++ T+I V G +
Sbjct: 70 VSTHVADGEDGADRGDLAEISIGVTGAPGADDIDLNETIIQVVGPE 115
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.133 0.374
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63005368
Number of Sequences: 2977
Number of extensions: 2489736
Number of successful extensions: 7861
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7822
Number of HSP's gapped (non-prelim): 38
length of query: 175
length of database: 189,106,746
effective HSP length: 57
effective length of query: 118
effective length of database: 154,992,987
effective search space: 18289172466
effective search space used: 18289172466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)