BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1379 (flaB1-2) DE:FLAGELLIN B PRECURSOR
(219 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (s... 434 e-121
sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||... 306 2e-82
dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis] 298 3e-80
sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||... 222 3e-57
dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis] 218 5e-56
sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||... 201 4e-51
sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||... 190 1e-47
dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis] 188 4e-47
dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis] 184 8e-46
pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (s... 183 1e-45
sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C4131... 173 2e-42
sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64... 158 4e-38
pir||E64411 flagellin B3 precursor - Methanococcus jannaschii >g... 153 1e-36
sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR 153 1e-36
sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64... 152 4e-36
emb|CAC12527.1| (AL445067) flagellin B3 precursor related protei... 150 1e-35
sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27... 149 2e-35
sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27... 144 7e-34
sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27... 143 2e-33
dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis] 141 5e-33
sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D4131... 140 1e-32
sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||... 136 3e-31
sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B4131... 134 6e-31
emb|CAC11693.1| (AL445064) flagellin B precursor related protein... 131 5e-30
sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316... 119 3e-26
sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E2894... 87 2e-16
sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D2894... 87 2e-16
sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A2894... 86 4e-16
sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C2894... 86 4e-16
sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B2894... 85 6e-16
gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Haloba... 81 9e-15
emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii] 81 9e-15
sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X... 80 2e-14
sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA1... 79 4e-14
emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii] 79 5e-14
pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi ... 77 1e-13
emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii] 73 3e-12
>pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (strain Orsay)
>gi|5458912|emb|CAB50399.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 219
Score = 434 bits (1104), Expect = e-121
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI
Sbjct: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
Query: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQI 120
YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQI
Sbjct: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQI 120
Query: 121 SDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNR 180
SDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNR
Sbjct: 121 SDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNR 180
Query: 181 RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ
Sbjct: 181 RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
>sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||B71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256956|dbj|BAA29639.1| (AP000002) 214aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 214
Score = 306 bits (775), Expect = 2e-82
Identities = 159/218 (72%), Positives = 183/218 (83%), Gaps = 6/218 (2%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQA G QTTQEV+SGIKI+N++G
Sbjct: 2 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQAAGRQTTQEVASGIKIVNVFG 61
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISD 122
Y+N++ PSNGTI KMAI V+PNAGS GI LSNVKIVLSDGK+L VYNYS G+LY +I D
Sbjct: 62 YINATPPSNGTIVKMAILVTPNAGSSGIDLSNVKIVLSDGKRLAVYNYS-GVLYTGKILD 120
Query: 123 LFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRT-TVFETEDNRR 181
LFN +TIW N ++ TF IAV+ND G+KM+ +P LEWGDTVALLLRT VFE E +
Sbjct: 121 LFN---LTIWKNTSNGTFSIAVVNDVGSKMENHHPTLEWGDTVALLLRTDDVFEYE-GKG 176
Query: 182 GIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
GIGP T+I+GKVIP+ GAAGVIDFTTP T+ Y V+ LQ
Sbjct: 177 GIGPSTKIIGKVIPDAGAAGVIDFTTPPTFGYNVLELQ 214
>dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis]
Length = 219
Score = 298 bits (756), Expect = 3e-80
Identities = 152/220 (69%), Positives = 182/220 (82%), Gaps = 2/220 (0%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
M R+GAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYL+QKAQA G QTTQEV+SGIK++N+
Sbjct: 1 MRRRGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLEQKAQAAGRQTTQEVASGIKVLNV 60
Query: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQI 120
YGY N++ PSNGTI +MAIF++PNAGS GI LSNVKIVLSDG++LVVYNYS + +
Sbjct: 61 YGYTNATPPSNGTIERMAIFITPNAGSEGIDLSNVKIVLSDGRRLVVYNYSGSFQNAESV 120
Query: 121 SDLFNDSIVTIWNNITDT-TFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDN 179
DLFN + V +WN+ T +FGIAVIND G++M +P LE+GD VAL + TT+FE ED
Sbjct: 121 KDLFNMTYVGVWNSTNGTASFGIAVINDIGSEMQGTHPTLEFGDMVALCVWTTMFEYED- 179
Query: 180 RRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
+ GIGP TRI GKVIPE GAAGV+DFTTP+T++Y VMVLQ
Sbjct: 180 KDGIGPSTRITGKVIPERGAAGVLDFTTPATFSYNVMVLQ 219
>sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||C71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256957|dbj|BAA29640.1| (AP000002) 255aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 255
Score = 222 bits (559), Expect = 3e-57
Identities = 128/254 (50%), Positives = 165/254 (64%), Gaps = 37/254 (14%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GAIGIGTLIVFIAMVLVAAVAAGV+I T+GYLQQKA ATG QTTQEV+SGI++ IYG
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLITTSGYLQQKAMATGRQTTQEVASGIRVSGIYG 61
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNY-----SKGL--- 114
Y S+ P +G IT++ ++V+PNAGSGGI L++V++VLSDGK++ VY Y +GL
Sbjct: 62 YTPSNPPGSGKITRLVVYVTPNAGSGGIDLAHVRVVLSDGKRMAVYRYYDSDKDQGLQAG 121
Query: 115 --LYDKQISDL---FND-------------SIVTIWNNI-------TDTTFGIAVINDSG 149
LY I ++ FND S+ +W N+ FGI V+ D
Sbjct: 122 YFLYAGDIENIVPYFNDTDVLSVSNYTTVTSVADVWKNLYYAMTQDNKMLFGIVVVADDD 181
Query: 150 NKMDKD-YPNLEWGDTVALLLRTTVFETED---NRRGIGPGTRIVGKVIPEVGAAGVIDF 205
+ + +P L +GD AL+L T F+ ++ N GI P T++VGKVIPE GA GVIDF
Sbjct: 182 DSLSNTAHPTLGFGDKAALILWTIPFDDDNDYSNGYGIPPSTKVVGKVIPENGAGGVIDF 241
Query: 206 TTPSTYNYRVMVLQ 219
TTPSTY +M LQ
Sbjct: 242 TTPSTYTDNLMELQ 255
>dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis]
Length = 275
Score = 218 bits (549), Expect = 5e-56
Identities = 125/274 (45%), Positives = 164/274 (59%), Gaps = 57/274 (20%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GAIGIGTLIVFIAMVLVAAVAAGV+I T+GYLQQKA + G QTTQEV+SGIK++N+YG
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQKAMSAGRQTTQEVASGIKVLNVYG 61
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNY------------ 110
Y+N S P IT++ ++VSPNAGSGGI L++VK+V+SDGK++ VY Y
Sbjct: 62 YINGSTPGAHNITRLVLYVSPNAGSGGIDLAHVKVVISDGKRMAVYRYYDPNEDKNSDIQ 121
Query: 111 SKGLLYDKQISDLF---------------------------NDSIVTIW----------- 132
+ Y I+++F N I +W
Sbjct: 122 PAYIHYTGDIANVFAYEKWEPYYKGKYPTGFDPNNKFYITDNIDISAVWWNLYSAYNKTS 181
Query: 133 NNITD---TTFGIAVINDSGNKMD-KDYPNLEWGDTVALLLRTTVFETEDN---RRGIGP 185
NN D FGIAV+ D +D +++P+L WGD A++L T F+ +N G+ P
Sbjct: 182 NNDKDYGKLLFGIAVVQDGDESLDSENHPSLSWGDIAAIMLWTFPFDDNNNPIDGFGLPP 241
Query: 186 GTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
T++ GKVIPE GA GVIDFTTPSTY ++ LQ
Sbjct: 242 STKVTGKVIPENGAGGVIDFTTPSTYTDNILELQ 275
>sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||H71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256954|dbj|BAA29637.1| (AP000002) 207aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 207
Score = 201 bits (507), Expect = 4e-51
Identities = 115/217 (52%), Positives = 147/217 (66%), Gaps = 11/217 (5%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQK+QATG QTTQEV+SGIK+ ++ G
Sbjct: 2 RRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASGIKVTSVIG 61
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISD 122
+V++ +N I K+AI+VSPNAGS GI L KIVL + V Y++ Y+ + +
Sbjct: 62 HVDT---TNNAIDKLAIYVSPNAGSEGIDLRYTKIVLRSKSQEVSLYYNRSNYYNGAVDN 118
Query: 123 LFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNRRG 182
+F+ I +W + TFGI VI DS N + ++YP L GD VAL + G
Sbjct: 119 IFD--ISGVWPS-NGYTFGIVVIQDSDNSVQQNYPTLNQGDLVALTVNANA-----ALGG 170
Query: 183 IGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
I PGT I G+VIPE GA GVI+FTTPSTY V+ LQ
Sbjct: 171 IKPGTSISGEVIPEQGAPGVIEFTTPSTYTETVVELQ 207
>sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||F71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256952|dbj|BAA29635.1| (AP000002) 237aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 237
Score = 190 bits (477), Expect = 1e-47
Identities = 110/240 (45%), Positives = 147/240 (60%), Gaps = 31/240 (12%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
RKGA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQKA TG +TTQEV+SGIK+ + G
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASGTGRETTQEVASGIKVDRVVG 65
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLV--VYNYSKGLLYDKQI 120
Y + G IT++A+++SPNAGS GI L+ V+++LS+G+K V YNY Q
Sbjct: 66 Y---APDITGDITRLAVYISPNAGSSGIDLNKVRVILSNGQKEVSLKYNYVYNATSSTQT 122
Query: 121 ------SDLFNDSIVTI---------------WNNITDTTFGIAVINDSGNKMDKDYPNL 159
++FND ++ + W+ +T +TFG+ V+ D+ + P L
Sbjct: 123 YVALPQGNIFNDIVLGVNGTSENAASTQVNFNWSLLTGSTFGLIVLQDADGSVKASTPTL 182
Query: 160 EWGDTVALLLRTTVFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
GD V + + + + GI P T I G+VIPE GA GVI+FTTPSTY VM LQ
Sbjct: 183 NQGDLVIIAI-----DVDAALGGIPPRTSITGEVIPEQGAPGVIEFTTPSTYTAHVMELQ 237
>dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis]
Length = 258
Score = 188 bits (473), Expect = 4e-47
Identities = 115/256 (44%), Positives = 148/256 (56%), Gaps = 38/256 (14%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
+ ++GA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQK+Q+TG QTT+EV+SGIK+ +I
Sbjct: 4 LKKRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQSTGRQTTEEVASGIKVTSI 63
Query: 61 YGYV--NSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNY------SK 112
GY + S I+K+AI+VSPNAGS GI + V+++LSDG V Y S
Sbjct: 64 VGYAPYDDSNKVYKPISKLAIYVSPNAGSAGIDMKKVRVILSDGSIEAVLKYDNSDADSD 123
Query: 113 GLLYDKQI------SDLFNDSIVT---------IWNNITDTTFGIAVINDSGNKMDKDYP 157
G L DK + ++F D T W+ + D TFGI V+ DS + P
Sbjct: 124 GTL-DKDVFAVGMPDNVFEDDTGTTAYDGDQYITWSELNDKTFGIIVVQDSDGSLKPLTP 182
Query: 158 NLEWGDTVALLLRTTVFETEDN--------------RRGIGPGTRIVGKVIPEVGAAGVI 203
L GD + +R + + N GI P T I G+V+PE GA GVI
Sbjct: 183 TLNKGDIAIIAVRVGNYYVDSNGNLQAYSPTPDGVFGEGIKPNTHITGQVVPEHGAPGVI 242
Query: 204 DFTTPSTYNYRVMVLQ 219
DFTTPSTY VM LQ
Sbjct: 243 DFTTPSTYTQSVMELQ 258
>dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis]
Length = 294
Score = 184 bits (462), Expect = 8e-46
Identities = 124/289 (42%), Positives = 156/289 (53%), Gaps = 72/289 (24%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
RKGA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQK+QATG +TTQEV+SGIK+ + G
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRETTQEVASGIKVERVVG 65
Query: 63 YVN---SSVPSNGT----ITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGL- 114
+ +++ S+ T I ++AI+VSPNAGS GI LSN K++LS+G+K V Y+ G
Sbjct: 66 KTDLPYTNIGSDSTELDYIRQLAIYVSPNAGSSGIDLSNTKVILSNGEKEAVLKYAGGPD 125
Query: 115 ----------------LYDKQISDLFN----DSIVTIWNNITDT--------TFGIAVIN 146
LY K SD N S + W N+ T FGI VI
Sbjct: 126 DDYDAFTKGVQNDIFDLYFKYSSDGTNWNNEHSGLAAWKNLYYTGTNHDPAKNFGIIVIQ 185
Query: 147 DSGNKMDKDYPNLEWGDTVALLLRTTVFE-------TEDNR------------------- 180
D+ N + +DYP L GD V L + E +DN
Sbjct: 186 DADNSLTEDYPTLNKGDLVVLTVLVGSLEEYTGNPSNDDNAVYETGGAKYDYIDVNGNSD 245
Query: 181 ----------RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
GI GT+I G+V+PE GA GVI+FTTPSTY VM LQ
Sbjct: 246 TTDTIQGVFGEGIPAGTKITGEVVPEFGAPGVIEFTTPSTYTEAVMELQ 294
>pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (strain Orsay)
>gi|5458911|emb|CAB50398.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 222
Score = 183 bits (460), Expect = 1e-45
Identities = 102/227 (44%), Positives = 148/227 (64%), Gaps = 16/227 (7%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GAIGIGTLIVFIAMVLVAAVAAGV+I T+GYLQQ+A + G++TT++VSSG++II+I+G
Sbjct: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
Query: 63 YVNSSVPSNGT----ITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDK 118
Y + N T ITK+AI+++PNAGS I+L+ +I+L+ +V++ + +
Sbjct: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGG----ED 117
Query: 119 QISDLFNDSI----VTIWNNITDTTFGIAVINDSGNKM--DKDYPNLEWGDTVALLLRTT 172
++D N ++ TIW NI T FG+ V+ DS M +K P + GD LL+ T
Sbjct: 118 TVADWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTK 177
Query: 173 VFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
+ + GI P T++VGK++P GA VID TP+TY+ + LQ
Sbjct: 178 L--AFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
>sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C41316 flagellin B2 precursor
- Methanococcus voltae >gi|150063|gb|AAA73075.1|
(M72148) flagellin [Methanococcus voltae]
Length = 216
Score = 173 bits (434), Expect = 2e-42
Identities = 102/211 (48%), Positives = 129/211 (60%), Gaps = 14/211 (6%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KGA GIGTLIVFIAMVLVAAVAA V+I T+G+LQQKA TG ++T++V+SG++I +
Sbjct: 9 NKKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLQISQVM 68
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYD-KQI 120
G N N I K AI++SPNAGS I LS I+LSDG VY Y++ D
Sbjct: 69 GMHN-----NSNINKTAIYISPNAGSSAIDLSQAVIMLSDGSNKRVYKYNESSYKDLTNG 123
Query: 121 SDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNR 180
D+F+++ V W T T FGI VI D+ P + GD VA+ L TT F T
Sbjct: 124 GDIFDNANVE-WIKATATKFGIVVIQDADESCTAANPVINKGDLVAITLNTTSFSTT--- 179
Query: 181 RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTY 211
P T I G V PE GA G+I FTTP+TY
Sbjct: 180 ----PRTSITGTVQPEFGAPGIISFTTPATY 206
>sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64411 flagellin B2
precursor - Methanococcus jannaschii
>gi|1591570|gb|AAB98895.1| (U67533) flagellin B2 (flaB2)
[Methanococcus jannaschii]
Length = 217
Score = 158 bits (396), Expect = 4e-38
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 11/217 (5%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
++GA+GIGTLI+FIAMVLVAAVAA V+I T+G+LQQKA ATG ++T++V+SG+ + + G
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLSTLQVIG 69
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISD 122
+ N I +AI+++PNAGS I L+ KI+++DG+K V Y+ D
Sbjct: 70 -----IHDNKAINYLAIYITPNAGSAAIDLNQTKILITDGEKKAVLRYNSNAYADLTTGG 124
Query: 123 LFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNRRG 182
++ + W N++ FGI V+ D+ P + GD VAL + +
Sbjct: 125 EVTNTSLAAW-NLSGGEFGIIVLQDADGSCKSTTPVINKGDIVALTINASAVGL-----N 178
Query: 183 IGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
+ P T + G VIPE GA VI+FTTP+ Y V+Q
Sbjct: 179 LVPRTTVTGSVIPEFGAPAVIEFTTPAAYLSTQEVIQ 215
>pir||E64411 flagellin B3 precursor - Methanococcus jannaschii
>gi|1591571|gb|AAB98896.1| (U67533) flagellin B3 (flaB3)
[Methanococcus jannaschii]
Length = 223
Score = 153 bits (384), Expect = 1e-36
Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 33/229 (14%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GAIGIGTLI+FIA+VLVAAVAA VII TA LQ KA G ++T++V+SGI+++ I G
Sbjct: 16 RRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKITG 75
Query: 63 Y-VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQIS 121
Y VN+ ITK+AI VSPN G I LS+ + +S+G +Y L+Y QI+
Sbjct: 76 YAVNTK-----NITKLAILVSPNVGD-EIDLSSTIVTISNG------DYKASLVYGGQIT 123
Query: 122 --------DLFNDSIVTIWNNITD--TTFGIAVINDSGNKMDK-DYPNLEWGDTVALLLR 170
D+FN+S W NI + T FG+ V+ D+ M+ ++P + +GD + +
Sbjct: 124 YVNTNGTRDIFNES----WPNIANPTTEFGVIVLQDADGSMNNTEHPTMNFGDKAIIAI- 178
Query: 171 TTVFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
D GI P RI G+VIPE GA+G+I+F PST++ V+ LQ
Sbjct: 179 ----NVGDVFGGIMPRERIYGEVIPEFGASGIIEFRAPSTFSEHVVTLQ 223
>sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR
Length = 216
Score = 153 bits (384), Expect = 1e-36
Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 33/229 (14%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+GAIGIGTLI+FIA+VLVAAVAA VII TA LQ KA G ++T++V+SGI+++ I G
Sbjct: 9 RRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKITG 68
Query: 63 Y-VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQIS 121
Y VN+ ITK+AI VSPN G I LS+ + +S+G +Y L+Y QI+
Sbjct: 69 YAVNTK-----NITKLAILVSPNVGD-EIDLSSTIVTISNG------DYKASLVYGGQIT 116
Query: 122 --------DLFNDSIVTIWNNITD--TTFGIAVINDSGNKMDK-DYPNLEWGDTVALLLR 170
D+FN+S W NI + T FG+ V+ D+ M+ ++P + +GD + +
Sbjct: 117 YVNTNGTRDIFNES----WPNIANPTTEFGVIVLQDADGSMNNTEHPTMNFGDKAIIAI- 171
Query: 171 TTVFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
D GI P RI G+VIPE GA+G+I+F PST++ V+ LQ
Sbjct: 172 ----NVGDVFGGIMPRERIYGEVIPEFGASGIIEFRAPSTFSEHVVTLQ 216
>sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64411 flagellin B1
precursor - Methanococcus jannaschii
>gi|1591569|gb|AAB98894.1| (U67533) flagellin B1 (flaB1)
[Methanococcus jannaschii]
Length = 217
Score = 152 bits (379), Expect = 4e-36
Identities = 89/218 (40%), Positives = 129/218 (58%), Gaps = 11/218 (5%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
++GA+GIGTLI+FIAMVLVAAVAA V+I T+G+LQQKA ATG ++T++V+SG+ I + G
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLMCIGVTG 69
Query: 63 YVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISD 122
+ + ++ G I K+AI+++PNAGS I L N K+ L + V NYS D
Sbjct: 70 HYDKTL---GGIDKLAIYITPNAGSAPIDLKNAKLFLIYDGESHVLNYSTVTTATLGADD 126
Query: 123 LFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLR-TTVFETEDNRR 181
+FN S +T W+ +++ + VI D+ + N GD LL+ VF +
Sbjct: 127 IFNSSAITDWSLADSSSYVVGVIQDADGSLSNGVINK--GDIAVLLVNANAVF-----NK 179
Query: 182 GIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
I + + G+ PE GA VI FTTP+ Y V+ LQ
Sbjct: 180 AIPTRSEVSGQFQPEFGAPAVIQFTTPAAYTQTVIELQ 217
>emb|CAC12527.1| (AL445067) flagellin B3 precursor related protein [Thermoplasma
acidophilum]
Length = 263
Score = 150 bits (375), Expect = 1e-35
Identities = 90/215 (41%), Positives = 122/215 (55%), Gaps = 11/215 (5%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
K GIG LIVFIAM+LVAAVAA V+I TAG LQQKA +TG T Q+V+SG+ I I GY
Sbjct: 47 KSESGIGVLIVFIAMILVAAVAASVLIHTAGILQQKASSTGTTTIQQVASGVVITQILGY 106
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISDL 123
++ P G I+ +AIFV+ N+G + LSN I LS G V Y+ + YD +
Sbjct: 107 DYANPPEAGGISYLAIFVTINSGGSSVDLSNTTITLSVGGTTAVLVYNTSIFYDIAGTGS 166
Query: 124 FNDSIVTIWNNIT-----DTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLR-TTVFETE 177
N +W+ ++ T FGI V D + M YP LE GD AL++ T F T
Sbjct: 167 ANIFSAPVWSELSASHKNPTNFGILVEADPSHSMTNLYPVLETGDVAALIVNVTNTFGT- 225
Query: 178 DNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYN 212
I G+ + G++ PEVG+ +IDF P+ ++
Sbjct: 226 ----NITQGSAVSGQITPEVGSPALIDFNAPTAFS 256
>sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27725.1| (U76620) FlaB1
[Methanococcus vannielii]
Length = 215
Score = 149 bits (373), Expect = 2e-35
Identities = 98/222 (44%), Positives = 138/222 (62%), Gaps = 19/222 (8%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KG GIGTLIVFIAMVLVAAVAA V+I T+G+LQQKA TG ++T++V+SG++++ +
Sbjct: 9 NKKGDSGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVMGVN 68
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKI-VLSDGKKLVVYNYSKGLLYDKQI 120
GY + + +N ++KMAI+V+PNAGS I L+N K+ V DG+ V L YD +
Sbjct: 69 GYQDGTNDAN--VSKMAIYVTPNAGSSAIDLTNSKLFVTYDGQTHV-------LAYD-DV 118
Query: 121 SDLF--NDSIVTIWNNITDTT-FGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETE 177
+DL N I N T + F +AV+ D+ N N GD VA+++ T+
Sbjct: 119 TDLTTGNSDIFDAINVGTPASEFHVAVLQDNDNSTGNGVINK--GDIVAIVIETSDIFGN 176
Query: 178 DNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
D GI + GKV PE GA GV +FTTP+TY +V+ LQ
Sbjct: 177 D---GIPERKSVSGKVQPEFGAPGVFEFTTPATYTNKVLELQ 215
>sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27726.1| (U76620) FlaB2
[Methanococcus vannielii]
Length = 222
Score = 144 bits (360), Expect = 7e-34
Identities = 88/217 (40%), Positives = 127/217 (57%), Gaps = 20/217 (9%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KGA GIGTLIVFIAMVLVAAVAA V+I T+G+LQQKA TG ++T++V+SG++++ I
Sbjct: 9 NKKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVLQIM 68
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNY-------SKGL 114
G +SS ITK+A++++PNAGS + LS + LS+G ++ Y K
Sbjct: 69 GVHDSS-----NITKLAVYIAPNAGSSAVDLSQSVVTLSNGDVKSIFKYDTTDAAADKSY 123
Query: 115 LYDKQISDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVF 174
K LF ++ + I +T+T FGI VI D+ P L GD VA++L
Sbjct: 124 GAVKTGGSLFAEATLNI-QIMTNTQFGIIVIQDADGSCKAATPVLNKGDIVAIVLNLNET 182
Query: 175 ETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTY 211
TE P T I G + + + ++ FTTP+TY
Sbjct: 183 MTE-------PRTAITGSIPTGIWCSRIMSFTTPATY 212
>sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27727.1| (U76620) FlaB3
[Methanococcus vannielii]
Length = 207
Score = 143 bits (356), Expect = 2e-33
Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 24/214 (11%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
M +KGA+GIGTLI+FIAMVLVAAVAA VII TAG LQ KA A G ++T++V+SG++++ +
Sbjct: 7 MDKKGAVGIGTLIIFIAMVLVAAVAASVIINTAGNLQHKASAVGQESTKQVASGLQVMRV 66
Query: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDG--KKLVVYNYSKGLLYDK 118
G+ ++ + K+ V+PN G G I LS + LSDG K VY+ +K L D
Sbjct: 67 VGHASNKT----QLDKIGAIVTPNVG-GEIDLSTSIVTLSDGSAKHSFVYDSTKHKLVDN 121
Query: 119 QISDLFNDSIVTIWNNITDTTFGIAVINDS-GNKMDKDYPNLEWGDTVALLLRTTVFETE 177
LFN++ W T FG+ V+ DS G+ D P + +GD V L L + T
Sbjct: 122 GSDSLFNET----W--ATGNYFGVLVLQDSDGSASVPDNPTINYGDKVILTLEMNINAT- 174
Query: 178 DNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTY 211
T++ G+VIPE G+ G+I+F T S +
Sbjct: 175 ---------TKVSGEVIPEYGSPGIINFRTQSVF 199
>dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis]
Length = 580
Score = 141 bits (353), Expect = 5e-33
Identities = 65/110 (59%), Positives = 90/110 (81%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
+ ++GA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQKA +TG +TTQEV+SG+KI+ +
Sbjct: 5 LKKRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASSTGRETTQEVASGLKIMKV 64
Query: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNY 110
GY + P++G I ++A++VSPNAGS GI + V+++LS+G K +YNY
Sbjct: 65 IGYDPADPPASGKIERLAVYVSPNAGSSGIDMKKVRVILSNGDKQAIYNY 114
>sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D41316 flagellin B3 precursor
- Methanococcus voltae >gi|150064|gb|AAA73076.1|
(M72148) flagellin [Methanococcus voltae]
Length = 239
Score = 140 bits (350), Expect = 1e-32
Identities = 97/241 (40%), Positives = 133/241 (54%), Gaps = 32/241 (13%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KGA+GIGTLI+FIA+VLVAAVAA VII TAG LQ KA G +TTQ+V+SG++++ I
Sbjct: 8 NKKGAVGIGTLIIFIALVLVAAVAASVIINTAGKLQHKAAVVGQETTQQVASGLQVVKIT 67
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLS--DGKKLVVYNYSKG------ 113
G+ SV + K+AI VSPN G I L+ + S D K ++Y+ S
Sbjct: 68 GH---SV-DQYNLDKIAILVSPNIGD-EIDLATTVVTFSTDDRKMSLLYDSSNASNGGKV 122
Query: 114 -LLYDKQISDLFN-DSIVTI--W-----------NNITDTTFGIAVINDSGNKMDKDYPN 158
L SD+F D + I W + + FGI V+ D N + ++P
Sbjct: 123 RLSTANGTSDIFKYDDVYAIGAWPFEDPTYGQSDQDPNEKKFGIVVLQDMDNSVSGEHPT 182
Query: 159 LEWGDTVALLLRTTVFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVL 218
+ +GD V L + E+ IG RI G+V+PE GA G+IDFTTP Y RV+ L
Sbjct: 183 VNYGDKVLLAINIGNIVGEN----IGNRIRIQGEVVPEFGAPGIIDFTTPPVYANRVVAL 238
Query: 219 Q 219
Q
Sbjct: 239 Q 239
>sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||A71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256955|dbj|BAA29638.1| (AP000002) 334aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 334
Score = 136 bits (338), Expect = 3e-31
Identities = 79/163 (48%), Positives = 112/163 (68%), Gaps = 15/163 (9%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
+KGA+GIGTLIVFIAMVLVAAVAA V+I T+GYLQQK+QATG QTTQEV+SGIK+ + G
Sbjct: 2 KKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASGIKVTRVVG 61
Query: 63 YVNSSVPSNGT-ITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKG-------- 113
+S+ +N T I ++A++++PNAGS GI L+ V+I LSDG+K ++ Y G
Sbjct: 62 KADSA--TNPTYIQELAVYITPNAGSSGIDLTKVRITLSDGQKQAIFKYRVGNSANELYF 119
Query: 114 ---LLYDKQISDLFNDSIVTIWNNITD-TTFGIAVINDSGNKM 152
L+ + + F++ V ++ + TD T+ VI D+ NK+
Sbjct: 120 LAELMQNLGATIKFDNGSVQVYFDPTDWTSAAPTVIIDTTNKV 162
>sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B41316 flagellin B1 precursor
- Methanococcus voltae >gi|150062|gb|AAA73074.1|
(M72148) flagellin [Methanococcus voltae]
Length = 218
Score = 134 bits (335), Expect = 6e-31
Identities = 84/219 (38%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KGA GIGTLIVFIAMVLVAAVAA V+I T+G+LQQKA TG ++T++V+SG+++ +
Sbjct: 9 NKKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLQVTGVT 68
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKI-VLSDGKKLVVYNYSKGLLYDKQI 120
G VNS+ N IT + +++P AGS I LS K+ V +G V+ +
Sbjct: 69 G-VNSTDSEN--ITHIVAYITPKAGSSAIDLSQAKLFVTYNGVSAVLKANESAIDGTSGT 125
Query: 121 SDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFETEDNR 180
D+ + T+ +N + T + + + D + K+ + GD VA +R + + +
Sbjct: 126 PDVLS---ATLLSNTSATEYQVVSLQDFDGSVAKNQV-INKGDLVA--IRISTGQVFSST 179
Query: 181 RGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
+GI + GK+ PE GA G+I+FTTP+T+ +V+ LQ
Sbjct: 180 KGIPTRAHVSGKLQPEFGAPGIIEFTTPATFTTKVVELQ 218
>emb|CAC11693.1| (AL445064) flagellin B precursor related protein [Thermoplasma
acidophilum]
Length = 240
Score = 131 bits (327), Expect = 5e-30
Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 35/240 (14%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
K GIGTLIVFIAMVLVAAVAA V+I TAG LQQKA +TG QTTQ+VS+GI++ +IYG
Sbjct: 12 KAETGIGTLIVFIAMVLVAAVAATVLIHTAGTLQQKATSTGSQTTQQVSTGIQVTSIYGL 71
Query: 64 -VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVL--------------------SDG 102
N++ P++G I +AI ++ AGS I+L+NV I + +
Sbjct: 72 DSNATYPTHGIIKWLAIQITVTAGSSSINLANVTISMTYHGVAASLTYVGLENIGNATSP 131
Query: 103 KKLVVYNYSKGLLYDKQISDLFNDSIVTIWNNITDTT--FGIAVINDSGNKMDKDYPNLE 160
K + +N + G +++FN S N +++ + F I V++D N + YP +
Sbjct: 132 KNVYGFNSAVG-----GTNNVFNASYFNTINGVSNGSKHFAILVLSDPTNSLTAQYPVIS 186
Query: 161 WGDTVALLLR-TTVFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
+ D V LL+ + VF GI G + G+V VG+ GVI FT P ++ V+ LQ
Sbjct: 187 YQDQVDLLVNVSAVF------GGITEGQAVSGQVQAPVGSPGVIQFTAPESFVSDVIQLQ 240
>sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316 flagellin A precursor -
Methanococcus voltae >gi|150061|gb|AAA73073.1| (M72148)
flagellin [Methanococcus voltae]
Length = 219
Score = 119 bits (295), Expect = 3e-26
Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 2 HRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIY 61
++KGA G+GTLIVFIAMVLVAAVAA V+I T+G+LQQKA +TG ++T++VS+G+K+
Sbjct: 9 NKKGATGVGTLIVFIAMVLVAAVAASVLINTSGFLQQKASSTGTESTEQVSTGLKMFQTS 68
Query: 62 GYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSD---GKKLVVYNYSKGLLYDK 118
G +N + I ++ I+V+P+ GS + L N K++++ V Y+ + +K
Sbjct: 69 GKLNEPI-----IDRLTIYVTPSPGSKPVDLKNTKLLMNRWTFQPPPVSYSSTYFENNNK 123
Query: 119 QISDLFNDSIVTIWNN---ITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRTTVFE 175
QI D+ WNN + + FG+ VI D + P + GD + + T +
Sbjct: 124 QIFDVTGSK---AWNNGAILPEYNFGVIVIQDDDGSCTAESPVIGKGDMAVITINCTNLD 180
Query: 176 TEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYR--VMVLQ 219
+ P TR+ G + E+G + P+ Y+ V++LQ
Sbjct: 181 -------LAPRTRLNGYLQSEIGFKTQFTYILPNAYDKTEDVVILQ 219
>sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E28944 flagellin B3 precursor
[validated] - Halobacterium salinarum
>gi|148768|gb|AAA72645.1| (M19884) flagellin B3
[Halobacterium halobium]
Length = 193
Score = 87.0 bits (212), Expect = 2e-16
Identities = 50/108 (46%), Positives = 66/108 (60%), Gaps = 5/108 (4%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAGYLQ K ATG + + +VS+ I I++ YG
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYS 111
VNS + + + V AG+ I+L+ I K YS
Sbjct: 71 VNSE-----KVDYVNLTVRQAAGADNINLTKSTIQWIGPDKATTLTYS 113
>sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D28944 flagellin B2 precursor
[validated] - Halobacterium salinarum
>gi|148767|gb|AAA72644.1| (M19884) flagellin B2
[Halobacterium halobium]
Length = 196
Score = 86.6 bits (211), Expect = 2e-16
Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAGYLQ K ATG + + +VS+ I I++ YG
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKI 97
V++S S + + V AG+ I+LS I
Sbjct: 71 VDTS-GSTEVVNYANLTVRQAAGADNINLSKSTI 103
>sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A28944 flagellin A1 precursor
[validated] - Halobacterium salinarum
>gi|148763|gb|AAA72641.1| (M19883) flagellin A1
[Halobacterium halobium] >gi|10580564|gb|AAG19424.1|
(AE005036) flagellin A1 precursor; FlaA1a [Halobacterium
sp. NRC-1]
Length = 196
Score = 85.8 bits (209), Expect = 4e-16
Identities = 54/134 (40%), Positives = 78/134 (57%), Gaps = 7/134 (5%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAG+LQ K ATG + + +VS+ I I++ YG
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISDL 123
V ++ T+ + V AG+ I+LS I + + + + L YD +D
Sbjct: 71 VKTA-SGTDTVDYANLTVRQAAGADNINLSKSTI------QWIGPDTATTLTYDGSTADA 123
Query: 124 FNDSIVTIWNNITD 137
N + +I N D
Sbjct: 124 ENFTTESIKGNNAD 137
>sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C28944 flagellin B1 precursor
[validated] - Halobacterium salinarum
>gi|148766|gb|AAA72643.1| (M19884) flagellin B1
[Halobacterium halobium] >gi|10580517|gb|AAG19383.1|
(AE005033) flagellin B1 precursor; FlaB1 [Halobacterium
sp. NRC-1]
Length = 193
Score = 85.8 bits (209), Expect = 4e-16
Identities = 49/108 (45%), Positives = 66/108 (60%), Gaps = 5/108 (4%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAGYLQ K ATG + + +VS+ I I++ YG
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYS 111
VN N + + + V AG+ I+L+ I + YS
Sbjct: 71 VN-----NEKVDYVNLTVRQAAGADNINLTKSTIQWIGPDRATTLTYS 113
>sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B28944 flagellin A2
precursor [validated] - Halobacterium salinarum
>gi|148764|gb|AAA72642.1| (M19883) flagellin A2
[Halobacterium halobium]
Length = 194
Score = 85.0 bits (207), Expect = 6e-16
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAG+LQ K ATG + + +VS+ I I++ YG
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 64 VNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKI 97
VN N + + + V AG+ I+LS I
Sbjct: 71 VN-----NEEVDYVNLTVRQAAGADNINLSKSTI 99
>gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Halobacterium sp. NRC-1]
Length = 207
Score = 81.1 bits (197), Expect = 9e-15
Identities = 36/98 (36%), Positives = 66/98 (66%), Gaps = 3/98 (3%)
Query: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
R+G +GIGTL+VF+AM+LVAA+AA ++ G LQ + ATG + +V++G+ + +G
Sbjct: 5 RRGQVGIGTLVVFMAMILVAAMAASTLVDIGGMLQSRGDATGEEAVGQVTNGVSVTGAFG 64
Query: 63 YVNSSVP---SNGTITKMAIFVSPNAGSGGISLSNVKI 97
+ ++ ++GT++ + I V +AGSG +++S+V +
Sbjct: 65 TITNATDDPFTDGTVSDIEIVVGQSAGSGNVNVSDVTV 102
>emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii]
Length = 201
Score = 81.1 bits (197), Expect = 9e-15
Identities = 50/169 (29%), Positives = 92/169 (53%), Gaps = 3/169 (1%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAG LQ +A+ATG ++T +VS + I+++ G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVSDRLDIVSVSGD 69
Query: 64 VNS-SVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDKQISD 122
V+ P+ M +P + ++ + + + G+++ +N S ++ I
Sbjct: 70 VDDPDDPTQINNISMVTATAPGSDPVDLNQTTAQFIGEGGEEM--FNLSHEGVFINSIQG 127
Query: 123 LFNDSIVTIWNNITDTTFGIAVINDSGNKMDKDYPNLEWGDTVALLLRT 171
+ ++ + +D + ++ + D Y L+ + + ++L T
Sbjct: 128 VTDEPDNNVLTESSDRAEVVFELDGAPGSYDIGYEALDESERLTVILTT 176
>sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X05383) flagellin
[Halobacterium salinarum]
Length = 181
Score = 80.4 bits (195), Expect = 2e-14
Identities = 46/89 (51%), Positives = 60/89 (66%), Gaps = 1/89 (1%)
Query: 9 IGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGYVNSSV 68
IGTLIVFIAMVLVAA+AAGV+I TAGYLQ K ATG + + +VS+ I I++ YG V++S
Sbjct: 1 IGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGNVDTS- 59
Query: 69 PSNGTITKMAIFVSPNAGSGGISLSNVKI 97
S + + V AG+ I+LS I
Sbjct: 60 GSTEVVNYANLTVRQAAGADNINLSKSTI 88
>sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA12418.1| (AJ225175) FlaB2
protein [Natrialba magadii] >gi|8250515|emb|CAB93656.1|
(AJ277988) flagellin subunit 2 [Natrialba magadii]
Length = 259
Score = 79.2 bits (192), Expect = 4e-14
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 21/168 (12%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV++ TAG LQ +A+ATG ++T VS I G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLMNTAGMLQSQAEATGEESTDLVSERIDTTIAVGT 69
Query: 64 VNSSV------PSNGTITKMAIFVSPNAGSGGISLSN--VKIVLSDGKKLVVYNYSKGLL 115
V++ V G + +++I V+ G+ I L+ +++V +G + +V
Sbjct: 70 VSTHVADGEDGADRGDLAEISIGVTGAPGADDIDLNETIIQVVGPEGAENLV-------- 121
Query: 116 YDKQISDLFNDSIVTIWNNITDTTFGIAVINDSGNKMDK-DYPNLEWG 162
++D ND W+ + T G D G+ D + N+E G
Sbjct: 122 ----MADGSNDMSEAGWDETSTTDIGSTESTDQGDTDDDVNASNIESG 165
>emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii]
Length = 261
Score = 78.8 bits (191), Expect = 5e-14
Identities = 48/100 (48%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYGY 63
+G +GIGTLIVFIAMVLVAA+AAGV+I TAG LQ +A+ATG ++T VS I G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQSQAEATGEESTDLVSERIDSTTAVGI 69
Query: 64 VNSSVPS------NGTITKMAIFVSPNAGSGGISLSNVKI 97
V+ + S G + ++ + VS AGS I LS I
Sbjct: 70 VSETEVSEEAGADRGELEEIRLGVSGAAGSDNIDLSETII 109
>pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi (strain Orsay)
>gi|5458913|emb|CAB50400.1| (AJ248287) FLAGELLIN B2
PRECURSOR. [Pyrococcus abyssi]
Length = 175
Score = 77.3 bits (187), Expect = 1e-13
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 10/105 (9%)
Query: 1 MHRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINI 60
M R+GAIGIGTLIVFIAMVLVAAVAA V+I T+G+LQ +A G + T++VS+G + +
Sbjct: 11 MARRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDA 70
Query: 61 YGYVNSSVPSNGTITKMAIFVSPNAGSGGISLSNVKIVLSDGKKL 105
Y V TI + V+ GS + +S +++ +GK+L
Sbjct: 71 Y------VTGTNTIN---LLVTLPTGSYPVDISRT-VIIVNGKQL 105
>emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii]
Length = 395
Score = 73.0 bits (176), Expect = 3e-12
Identities = 36/59 (61%), Positives = 48/59 (81%)
Query: 4 KGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
+G +GIGTLIVFIAMVLVAA+AAGV+I TAG LQ +A+ATG ++T +VS ++I + G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVSDRLEISSTSG 68
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81186388
Number of Sequences: 2977
Number of extensions: 3382785
Number of successful extensions: 8646
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8549
Number of HSP's gapped (non-prelim): 42
length of query: 219
length of database: 189,106,746
effective HSP length: 57
effective length of query: 162
effective length of database: 154,992,987
effective search space: 25108863894
effective search space used: 25108863894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)