BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1380 (flaB1-1) DE:FLAGELLIN B PRECURSOR
(222 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (s... 439 e-122
sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||... 189 2e-47
sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||... 183 1e-45
pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (s... 183 1e-45
sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||... 179 3e-44
sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||... 175 3e-43
dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis] 175 3e-43
dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis] 172 3e-42
dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis] 171 6e-42
sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64... 169 2e-41
pir||E64411 flagellin B3 precursor - Methanococcus jannaschii >g... 164 1e-39
sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR 164 1e-39
sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B4131... 160 1e-38
sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C4131... 154 7e-37
sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64... 153 2e-36
sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27... 151 7e-36
sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27... 145 4e-34
dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis] 141 8e-33
emb|CAC12527.1| (AL445067) flagellin B3 precursor related protei... 127 1e-28
dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis] 122 4e-27
emb|CAC11693.1| (AL445064) flagellin B precursor related protein... 121 8e-27
sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27... 118 5e-26
sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D4131... 118 7e-26
sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316... 111 7e-24
sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||... 109 2e-23
sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D2894... 88 7e-17
pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi ... 87 2e-16
sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A2894... 85 5e-16
emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii] 83 2e-15
sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C2894... 81 1e-14
sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X... 81 1e-14
sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E2894... 80 2e-14
sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B2894... 78 1e-13
gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Haloba... 74 1e-12
sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA1... 73 4e-12
emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii] 72 6e-12
emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii] 72 6e-12
>pir||A75063 flagellin B precursor PAB1380 - Pyrococcus abyssi (strain Orsay)
>gi|5458911|emb|CAB50398.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 222
Score = 439 bits (1117), Expect = e-122
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW
Sbjct: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA 120
GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA
Sbjct: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA 120
Query: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF 180
DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF
Sbjct: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF 180
Query: 181 NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ
Sbjct: 181 NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
>sp|O58286|FLA5_PYRHO PROBABLE FLAGELLIN PH0551 >gi|7443271|pir||C71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256957|dbj|BAA29640.1| (AP000002) 255aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 255
Score = 189 bits (476), Expect = 2e-47
Identities = 118/261 (45%), Positives = 155/261 (59%), Gaps = 45/261 (17%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MRRGAIGIGTLIVFIAMVLVAAVAAGVLI+TSGYLQQ+AM+ G +TT++V+SG+R+ I+
Sbjct: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLITTSGYLQQKAMATGRQTTQEVASGIRVSGIY 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGED--- 117
GY P N G+ IT+L +Y+ PNAGS I+L R++L+ M ++ + D
Sbjct: 61 GYTPSNPPGS----GKITRLVVYVTPNAGSGGIDLAHVRVVLSDGKRMAVYRYYDSDKDQ 116
Query: 118 -------TVADWTNGAVNVFNET----------------IWENI-------NGTKFGVGV 147
A V FN+T +W+N+ N FG+ V
Sbjct: 117 GLQAGYFLYAGDIENIVPYFNDTDVLSVSNYTTVTSVADVWKNLYYAMTQDNKMLFGIVV 176
Query: 148 VVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF---NKYG---GIPPNTKVVGKILPPHG 201
V D D S LSN A P + GD A L++ T + F N Y GIPP+TKVVGK++P +G
Sbjct: 177 VADDDDS-LSNTAHPTLGFGDKAALILWT-IPFDDDNDYSNGYGIPPSTKVVGKVIPENG 234
Query: 202 AGTVIDLITPATYSSEGIELQ 222
AG VID TP+TY+ +ELQ
Sbjct: 235 AGGVIDFTTPSTYTDNLMELQ 255
>sp|O58283|FLA2_PYRHO PROBABLE FLAGELLIN PH0548 >gi|7443273|pir||H71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256954|dbj|BAA29637.1| (AP000002) 207aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 207
Score = 183 bits (461), Expect = 1e-45
Identities = 108/224 (48%), Positives = 149/224 (66%), Gaps = 19/224 (8%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MRRGA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ++ + G +TT++V+SG+++ S+
Sbjct: 1 MRRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASGIKVTSVI 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA 120
G+ +TT N I KLAIY++PNAGSE I+L T+I+L KS V + +
Sbjct: 61 GHV--DTTNNA-----IDKLAIYVSPNAGSEGIDLRYTKIVLRSKSQEVSLYYNR----S 109
Query: 121 DWTNGAV-NVFN-ETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKL 178
++ NGAV N+F+ +W + NG FG+ V+ DSD S+ N P +N GDL L +N
Sbjct: 110 NYYNGAVDNIFDISGVWPS-NGYTFGIVVIQDSDNSVQQN--YPTLNQGDLVALTVNANA 166
Query: 179 AFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
A GGI P T + G+++P GA VI+ TP+TY+ +ELQ
Sbjct: 167 AL---GGIKPGTSISGEVIPEQGAPGVIEFTTPSTYTETVVELQ 207
>pir||B75063 flagellin B precursor PAB1379 - Pyrococcus abyssi (strain Orsay)
>gi|5458912|emb|CAB50399.1| (AJ248287) FLAGELLIN B
PRECURSOR [Pyrococcus abyssi]
Length = 219
Score = 183 bits (460), Expect = 1e-45
Identities = 102/227 (44%), Positives = 148/227 (64%), Gaps = 16/227 (7%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
R+GAIGIGTLIVFIAMVLVAAVAAGV+I T+GYLQQ+A + G++TT++VSSG++II+I+G
Sbjct: 3 RKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQATGMQTTQEVSSGIKIINIYG 62
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGG----ED 117
Y + N T ITK+AI+++PNAGS I+L+ +I+L+ +V++ + +
Sbjct: 63 YVNSSVPSNGT----ITKMAIFVSPNAGSGGISLSNVKIVLSDGKKLVVYNYSKGLLYDK 118
Query: 118 TVADWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTK 177
++D N ++ TIW NI T FG+ V+ DS M +K P + GD LL+ T
Sbjct: 119 QISDLFNDSI----VTIWNNITDTTFGIAVINDSGNKM--DKDYPNLEWGDTVALLLRTT 172
Query: 178 L--AFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
+ + GI P T++VGK++P GA VID TP+TY+ + LQ
Sbjct: 173 VFETEDNRRGIGPGTRIVGKVIPEVGAAGVIDFTTPSTYNYRVMVLQ 219
>sp|O58285|FLA4_PYRHO PROBABLE FLAGELLIN PH0550 >gi|7443275|pir||B71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256956|dbj|BAA29639.1| (AP000002) 214aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 214
Score = 179 bits (449), Expect = 3e-44
Identities = 97/224 (43%), Positives = 142/224 (63%), Gaps = 12/224 (5%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MR+GAIGIGTLIVFIAMVLVAAVAAGV+I T+GYLQQ+A + G +TT++V+SG++I++++
Sbjct: 1 MRKGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLQQKAQAAGRQTTQEVASGIKIVNVF 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA 120
GY N T I K+AI + PNAGS I+L+ +I+L+ + ++ + G
Sbjct: 61 GYINATPPSNGT----IVKMAILVTPNAGSSGIDLSNVKIVLSDGKRLAVYNYSG----V 112
Query: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTK--L 178
+T +++FN TIW+N + F + VV D M ++ P + GD LL+ T
Sbjct: 113 LYTGKILDLFNLTIWKNTSNGTFSIAVVNDVGSKMENH--HPTLEWGDTVALLLRTDDVF 170
Query: 179 AFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
+ GGI P+TK++GK++P GA VID TP T+ +ELQ
Sbjct: 171 EYEGKGGIGPSTKIIGKVIPDAGAAGVIDFTTPPTFGYNVLELQ 214
>sp|O58281|FLA1_PYRHO PROBABLE FLAGELLIN PH0546 >gi|7443272|pir||F71168 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256952|dbj|BAA29635.1| (AP000002) 237aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 237
Score = 175 bits (440), Expect = 3e-43
Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 35/244 (14%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
R+GA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ+A G ETT++V+SG+++ + G
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASGTGRETTQEVASGIKVDRVVG 65
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILT--VKSTMVIFTFGGEDTV 119
YAP I +IT+LA+YI+PNAGS I+LN+ R+IL+ K + + + T
Sbjct: 66 YAP-------DITGDITRLAVYISPNAGSSGIDLNKVRVILSNGQKEVSLKYNYVYNATS 118
Query: 120 ADWTNGAV---NVFNETI------------------WENINGTKFGVGVVVDSDKSMLSN 158
+ T A+ N+FN+ + W + G+ FG+ V+ D+D S+
Sbjct: 119 STQTYVALPQGNIFNDIVLGVNGTSENAASTQVNFNWSLLTGSTFGLIVLQDADGSV--K 176
Query: 159 KASPGMNSGDLAVLLINTKLAFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEG 218
++P +N GDL ++ I+ A GGIPP T + G+++P GA VI+ TP+TY++
Sbjct: 177 ASTPTLNQGDLVIIAIDVDAAL---GGIPPRTSITGEVIPEQGAPGVIEFTTPSTYTAHV 233
Query: 219 IELQ 222
+ELQ
Sbjct: 234 MELQ 237
>dbj|BAA84108.1| (AB018434) Flagellin B4 [Pyrococcus kodakaraensis]
Length = 219
Score = 175 bits (440), Expect = 3e-43
Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 8/223 (3%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
RRGAIGIGTLIVFIAMVLVAAVAAGV+I T+GYL+Q+A + G +TT++V+SG+++++++G
Sbjct: 3 RRGAIGIGTLIVFIAMVLVAAVAAGVIIGTAGYLEQKAQAAGRQTTQEVASGIKVLNVYG 62
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
Y N TI+ ++AI+I PNAGSE I+L+ +I+L+ +V++ + G A+
Sbjct: 63 YTNATPPSNGTIE----RMAIFITPNAGSEGIDLSNVKIVLSDGRRLVVYNYSGSFQNAE 118
Query: 122 WTNGAVNVFNETIWENINGT-KFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLI-NTKLA 179
N+ +W + NGT FG+ V+ D M P + GD+ L + T
Sbjct: 119 SVKDLFNMTYVGVWNSTNGTASFGIAVINDIGSEM--QGTHPTLEFGDMVALCVWTTMFE 176
Query: 180 FNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
+ GI P+T++ GK++P GA V+D TPAT+S + LQ
Sbjct: 177 YEDKDGIGPSTRITGKVIPERGAAGVLDFTTPATFSYNVMVLQ 219
>dbj|BAA84109.1| (AB018434) Flagellin B5 [Pyrococcus kodakaraensis]
Length = 275
Score = 172 bits (432), Expect = 3e-42
Identities = 112/281 (39%), Positives = 159/281 (55%), Gaps = 65/281 (23%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQ+AMS G +TT++V+SG+++++++
Sbjct: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQKAMSAGRQTTQEVASGIKVLNVY 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTF--GGEDT 118
GY G+T NIT+L +Y++PNAGS I+L +++++ M ++ + ED
Sbjct: 61 GY----INGSTPGAHNITRLVLYVSPNAGSGGIDLAHVKVVISDGKRMAVYRYYDPNEDK 116
Query: 119 VAD-------WTNGAVNVFNETIWE---------------------NI------------ 138
+D +T NVF WE NI
Sbjct: 117 NSDIQPAYIHYTGDIANVFAYEKWEPYYKGKYPTGFDPNNKFYITDNIDISAVWWNLYSA 176
Query: 139 -----NGTK------FGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAFNKYG--- 184
N K FG+ VV D D+S L ++ P ++ GD+A +++ T F+
Sbjct: 177 YNKTSNNDKDYGKLLFGIAVVQDGDES-LDSENHPSLSWGDIAAIMLWT-FPFDDNNNPI 234
Query: 185 ---GIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
G+PP+TKV GK++P +GAG VID TP+TY+ +ELQ
Sbjct: 235 DGFGLPPSTKVTGKVIPENGAGGVIDFTTPSTYTDNILELQ 275
>dbj|BAA84107.1| (AB018434) Flagellin B3 [Pyrococcus kodakaraensis]
Length = 258
Score = 171 bits (429), Expect = 6e-42
Identities = 103/257 (40%), Positives = 147/257 (57%), Gaps = 40/257 (15%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
+RGA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ++ S G +TT +V+SG+++ SI G
Sbjct: 6 KRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQSTGRQTTEEVASGIKVTSIVG 65
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
YAP + + + I+KLAIY++PNAGS I++ + R+IL+ S + + D +D
Sbjct: 66 YAPYDDSNK--VYKPISKLAIYVSPNAGSAGIDMKKVRVILSDGSIEAVLKYDNSDADSD 123
Query: 122 WT--------NGAVNVFNE------------TIWENINGTKFGVGVVVDSDKSMLSNKAS 161
T NVF + W +N FG+ VV DSD S+ +
Sbjct: 124 GTLDKDVFAVGMPDNVFEDDTGTTAYDGDQYITWSELNDKTFGIIVVQDSDGSL--KPLT 181
Query: 162 PGMNSGDLAVLLINTKLAF---------------NKYG-GIPPNTKVVGKILPPHGAGTV 205
P +N GD+A++ + + +G GI PNT + G+++P HGA V
Sbjct: 182 PTLNKGDIAIIAVRVGNYYVDSNGNLQAYSPTPDGVFGEGIKPNTHITGQVVPEHGAPGV 241
Query: 206 IDLITPATYSSEGIELQ 222
ID TP+TY+ +ELQ
Sbjct: 242 IDFTTPSTYTQSVMELQ 258
>sp|Q58301|FLA1_METJA FLAGELLIN B1 PRECURSOR >gi|2144941|pir||C64411 flagellin B1
precursor - Methanococcus jannaschii
>gi|1591569|gb|AAB98894.1| (U67533) flagellin B1 (flaB1)
[Methanococcus jannaschii]
Length = 217
Score = 169 bits (424), Expect = 2e-41
Identities = 105/224 (46%), Positives = 135/224 (59%), Gaps = 19/224 (8%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
+RGA+GIGTLI+FIAMVLVAAVAA VLI+TSG+LQQ+AM+ G E+T V+SGL I + G
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLMCIGVTG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
+ K G I KLAIYI PNAGS PI+L ++ L + + TV
Sbjct: 70 HYDKTLGG-------IDKLAIYITPNAGSAPIDLKNAKLFLIYDGESHVLNY---STVTT 119
Query: 122 WTNGAVNVFNE---TIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKL 178
T GA ++FN T W + + + VGV+ D+D S LSN +N GD+AVLL+N
Sbjct: 120 ATLGADDIFNSSAITDWSLADSSSYVVGVIQDADGS-LSNGV---INKGDIAVLLVNANA 175
Query: 179 AFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
FNK IP ++V G+ P GA VI TPA Y+ IELQ
Sbjct: 176 VFNK--AIPTRSEVSGQFQPEFGAPAVIQFTTPAAYTQTVIELQ 217
>pir||E64411 flagellin B3 precursor - Methanococcus jannaschii
>gi|1591571|gb|AAB98896.1| (U67533) flagellin B3 (flaB3)
[Methanococcus jannaschii]
Length = 223
Score = 164 bits (410), Expect = 1e-39
Identities = 98/223 (43%), Positives = 141/223 (62%), Gaps = 17/223 (7%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
RRGAIGIGTLI+FIA+VLVAAVAA V+I+T+ LQ +A VG E+TR V+SG++++ I G
Sbjct: 16 RRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKITG 75
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
YA NITKLAI ++PN G E I+L+ T + ++ +GG+ T +
Sbjct: 76 YAVNT--------KNITKLAILVSPNVGDE-IDLSSTIVTISNGDYKASLVYGGQITYVN 126
Query: 122 WTNGAVNVFNETIWENING--TKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLA 179
TNG ++FNE+ W NI T+FGV V+ D+D SM +N P MN GD A++ IN
Sbjct: 127 -TNGTRDIFNES-WPNIANPTTEFGVIVLQDADGSM-NNTEHPTMNFGDKAIIAINVG-- 181
Query: 180 FNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
+ +GGI P ++ G+++P GA +I+ P+T+S + LQ
Sbjct: 182 -DVFGGIMPRERIYGEVIPEFGASGIIEFRAPSTFSEHVVTLQ 223
>sp|Q58303|FLA3_METJA FLAGELLIN B3 PRECURSOR
Length = 216
Score = 164 bits (410), Expect = 1e-39
Identities = 98/223 (43%), Positives = 141/223 (62%), Gaps = 17/223 (7%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
RRGAIGIGTLI+FIA+VLVAAVAA V+I+T+ LQ +A VG E+TR V+SG++++ I G
Sbjct: 9 RRGAIGIGTLIIFIALVLVAAVAAAVIINTAANLQHKAARVGEESTRQVASGIQVLKITG 68
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
YA NITKLAI ++PN G E I+L+ T + ++ +GG+ T +
Sbjct: 69 YAVNT--------KNITKLAILVSPNVGDE-IDLSSTIVTISNGDYKASLVYGGQITYVN 119
Query: 122 WTNGAVNVFNETIWENING--TKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLA 179
TNG ++FNE+ W NI T+FGV V+ D+D SM +N P MN GD A++ IN
Sbjct: 120 -TNGTRDIFNES-WPNIANPTTEFGVIVLQDADGSM-NNTEHPTMNFGDKAIIAINVG-- 174
Query: 180 FNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
+ +GGI P ++ G+++P GA +I+ P+T+S + LQ
Sbjct: 175 -DVFGGIMPRERIYGEVIPEFGASGIIEFRAPSTFSEHVVTLQ 216
>sp|P27803|FLA1_METVO FLAGELLIN B1 PRECURSOR >gi|99142|pir||B41316 flagellin B1 precursor
- Methanococcus voltae >gi|150062|gb|AAA73074.1|
(M72148) flagellin [Methanococcus voltae]
Length = 218
Score = 160 bits (401), Expect = 1e-38
Identities = 90/221 (40%), Positives = 133/221 (59%), Gaps = 12/221 (5%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA GIGTLIVFIAMVLVAAVAA VLI+TSG+LQQ+A + G E+T V+SGL++ + G
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLQVTGVTG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
N+T NIT + YI P AGS I+L+Q ++ +T + ++ D
Sbjct: 70 V-------NSTDSENITHIVAYITPKAGSSAIDLSQAKLFVTYNGVSAVLK--ANESAID 120
Query: 122 WTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAFN 181
T+G +V + T+ N + T++ V + D D S+ N+ +N GDL + I+T F+
Sbjct: 121 GTSGTPDVLSATLLSNTSATEYQVVSLQDFDGSVAKNQV---INKGDLVAIRISTGQVFS 177
Query: 182 KYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
GIP V GK+ P GA +I+ TPAT++++ +ELQ
Sbjct: 178 STKGIPTRAHVSGKLQPEFGAPGIIEFTTPATFTTKVVELQ 218
>sp|P27804|FLA2_METVO FLAGELLIN B2 PRECURSOR >gi|99143|pir||C41316 flagellin B2 precursor
- Methanococcus voltae >gi|150063|gb|AAA73075.1|
(M72148) flagellin [Methanococcus voltae]
Length = 216
Score = 154 bits (386), Expect = 7e-37
Identities = 98/224 (43%), Positives = 135/224 (59%), Gaps = 20/224 (8%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA GIGTLIVFIAMVLVAAVAA VLI+TSG+LQQ+A + G E+T V+SGL+I + G
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKASTTGKESTEQVASGLQISQVMG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
SNI K AIYI+PNAGS I+L+Q I+L+ S ++ + E + D
Sbjct: 70 MHN---------NSNINKTAIYISPNAGSSAIDLSQAVIMLSDGSNKRVYKY-NESSYKD 119
Query: 122 WTNGAVNVFNETI-WENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF 180
TNG N + W TKFG+ V+ D+D+S + A+P +N GDL + +NT +F
Sbjct: 120 LTNGGDIFDNANVEWIKATATKFGIVVIQDADESCTA--ANPVINKGDLVAITLNT-TSF 176
Query: 181 NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATY--SSEGIELQ 222
+ P T + G + P GA +I TPATY S+ ++LQ
Sbjct: 177 S----TTPRTSITGTVQPEFGAPGIISFTTPATYLNDSKVVQLQ 216
>sp|Q58302|FLA2_METJA FLAGELLIN B2 PRECURSOR >gi|2144942|pir||D64411 flagellin B2
precursor - Methanococcus jannaschii
>gi|1591570|gb|AAB98895.1| (U67533) flagellin B2 (flaB2)
[Methanococcus jannaschii]
Length = 217
Score = 153 bits (382), Expect = 2e-36
Identities = 97/224 (43%), Positives = 131/224 (58%), Gaps = 19/224 (8%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
+RGA+GIGTLI+FIAMVLVAAVAA VLI+TSG+LQQ+AM+ G E+T V+SGL + + G
Sbjct: 10 KRGAMGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLSTLQVIG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
I LAIYI PNAGS I+LNQT+I++T + +
Sbjct: 70 IHDNKA---------INYLAIYITPNAGSAAIDLNQTKILITDGEKKAVLRYNSNAYADL 120
Query: 122 WTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLIN-TKLAF 180
T G V + W N++G +FG+ V+ D+D S S +P +N GD+ L IN + +
Sbjct: 121 TTGGEVTNTSLAAW-NLSGGEFGIIVLQDADGSCKS--TTPVINKGDIVALTINASAVGL 177
Query: 181 NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSS--EGIELQ 222
N + P T V G ++P GA VI+ TPA Y S E I+LQ
Sbjct: 178 N----LVPRTTVTGSVIPEFGAPAVIEFTTPAAYLSTQEVIQLQ 217
>sp|P95316|FLA1_METVA FLAGELLIN B1 PRECURSOR >gi|1679696|gb|AAC27725.1| (U76620) FlaB1
[Methanococcus vannielii]
Length = 215
Score = 151 bits (377), Expect = 7e-36
Identities = 90/221 (40%), Positives = 133/221 (59%), Gaps = 15/221 (6%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++G GIGTLIVFIAMVLVAAVAA VLI+TSG+LQQ+A + G E+T V+SGL+++ + G
Sbjct: 10 KKGDSGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVMGVNG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
Y + T +N++K+AIY+ PNAGS I+L +++ +T + + D V D
Sbjct: 70 YQ------DGTNDANVSKMAIYVTPNAGSSAIDLTNSKLFVTYDGQTHVLAY---DDVTD 120
Query: 122 WTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAFN 181
T G ++F + I ++F V V+ D+D S + +N GD+ ++I T F
Sbjct: 121 LTTGNSDIF-DAINVGTPASEFHVAVLQDNDNS----TGNGVINKGDIVAIVIETSDIFG 175
Query: 182 KYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
GIP V GK+ P GA V + TPATY+++ +ELQ
Sbjct: 176 N-DGIPERKSVSGKVQPEFGAPGVFEFTTPATYTNKVLELQ 215
>sp|P95317|FLA2_METVA FLAGELLIN B2 PRECURSOR >gi|1679697|gb|AAC27726.1| (U76620) FlaB2
[Methanococcus vannielii]
Length = 222
Score = 145 bits (362), Expect = 4e-34
Identities = 93/229 (40%), Positives = 133/229 (57%), Gaps = 24/229 (10%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA GIGTLIVFIAMVLVAAVAA VLI+TSG+LQQ+A + G E+T V+SGL+++ I G
Sbjct: 10 KKGASGIGTLIVFIAMVLVAAVAASVLINTSGFLQQKAATTGKESTEQVASGLQVLQIMG 69
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
SNITKLA+YIAPNAGS ++L+Q+ + L+ IF + D AD
Sbjct: 70 VHD---------SSNITKLAVYIAPNAGSSAVDLSQSVVTLSNGDVKSIFKYDTTDAAAD 120
Query: 122 WTNGAV----NVFNETIW--ENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLIN 175
+ GAV ++F E + + T+FG+ V+ D+D S A+P +N GD+ +++N
Sbjct: 121 KSYGAVKTGGSLFAEATLNIQIMTNTQFGIIVIQDADGS--CKAATPVLNKGDIVAIVLN 178
Query: 176 TKLAFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATY--SSEGIELQ 222
+ P T + G I ++ TPATY S ++LQ
Sbjct: 179 LNETMTE-----PRTAITGSIPTGIWCSRIMSFTTPATYLDGSTVVQLQ 222
>dbj|BAA84105.1| (AB018434) Flagellin B1 [Pyrococcus kodakaraensis]
Length = 294
Score = 141 bits (351), Expect = 8e-33
Identities = 103/291 (35%), Positives = 150/291 (51%), Gaps = 72/291 (24%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
R+GA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ++ + G ETT++V+SG+++ + G
Sbjct: 6 RKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRETTQEVASGIKVERVVG 65
Query: 62 YAP---KNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILT--VKSTMVIFTFGGE 116
N ++T I +LAIY++PNAGS I+L+ T++IL+ K ++ + G +
Sbjct: 66 KTDLPYTNIGSDSTELDYIRQLAIYVSPNAGSSGIDLSNTKVILSNGEKEAVLKYAGGPD 125
Query: 117 DTVADWTNGAVN-VF--------------NE----TIWENINGT--------KFGVGVVV 149
D +T G N +F NE W+N+ T FG+ V+
Sbjct: 126 DDYDAFTKGVQNDIFDLYFKYSSDGTNWNNEHSGLAAWKNLYYTGTNHDPAKNFGIIVIQ 185
Query: 150 DSDKSMLSNKASPGMNSGDLAVLLI-------------NTKLAFNKYG------------ 184
D+D S+ + P +N GDL VL + N A + G
Sbjct: 186 DADNSLTED--YPTLNKGDLVVLTVLVGSLEEYTGNPSNDDNAVYETGGAKYDYIDVNGN 243
Query: 185 -------------GIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
GIP TK+ G+++P GA VI+ TP+TY+ +ELQ
Sbjct: 244 SDTTDTIQGVFGEGIPAGTKITGEVVPEFGAPGVIEFTTPSTYTEAVMELQ 294
>emb|CAC12527.1| (AL445067) flagellin B3 precursor related protein [Thermoplasma
acidophilum]
Length = 263
Score = 127 bits (315), Expect = 1e-28
Identities = 79/220 (35%), Positives = 117/220 (52%), Gaps = 13/220 (5%)
Query: 7 GIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGYAPKN 66
GIG LIVFIAM+LVAAVAA VLI T+G LQQ+A S G T + V+SG+ I I GY
Sbjct: 51 GIGVLIVFIAMILVAAVAASVLIHTAGILQQKASSTGTTTIQQVASGVVITQILGY---- 106
Query: 67 TTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADWTNGA 126
N I+ LAI++ N+G ++L+ T I L+V T + + G+
Sbjct: 107 DYANPPEAGGISYLAIFVTINSGGSSVDLSNTTITLSVGGTTAVLVYNTSIFYDIAGTGS 166
Query: 127 VNVFNETIWENI-----NGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAFN 181
N+F+ +W + N T F G++V++D S P + +GD+A L++N F
Sbjct: 167 ANIFSAPVWSELSASHKNPTNF--GILVEADPSHSMTNLYPVLETGDVAALIVNVTNTFG 224
Query: 182 KYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIEL 221
I + V G+I P G+ +ID P +S++ IE+
Sbjct: 225 T--NITQGSAVSGQITPEVGSPALIDFNAPTAFSTKSIEI 262
>dbj|BAA84106.1| (AB018434) Flagellin B2 [Pyrococcus kodakaraensis]
Length = 580
Score = 122 bits (303), Expect = 4e-27
Identities = 80/201 (39%), Positives = 107/201 (52%), Gaps = 34/201 (16%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
+RGA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ+A S G ETT++V+SGL+I+ + G
Sbjct: 7 KRGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKASSTGRETTQEVASGLKIMKVIG 66
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIF--------TF 113
Y P + + I +LA+Y++PNAGS I++ + R+IL+ I+ TF
Sbjct: 67 YDPADPPAS----GKIERLAVYVSPNAGSSGIDMKKVRVILSNGDKQAIYNYYVPESGTF 122
Query: 114 GGEDTVA----------DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPG 163
E DWT+G G F G+ + D S A
Sbjct: 123 VSETPTTLKLAFATSEPDWTSGG------------TGLDFSAGLKIVFDASGSLTIADGN 170
Query: 164 MNSGDLAVLLINTKLAFNKYG 184
NS + I T + N YG
Sbjct: 171 GNSVSINRFTITTDTSNNYYG 191
>emb|CAC11693.1| (AL445064) flagellin B precursor related protein [Thermoplasma
acidophilum]
Length = 240
Score = 121 bits (300), Expect = 8e-27
Identities = 89/231 (38%), Positives = 119/231 (50%), Gaps = 21/231 (9%)
Query: 7 GIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGYAPKN 66
GIGTLIVFIAMVLVAAVAA VLI T+G LQQ+A S G +TT+ VS+G+++ SI+G N
Sbjct: 16 GIGTLIVFIAMVLVAAVAATVLIHTAGTLQQKATSTGSQTTQQVSTGIQVTSIYG-LDSN 74
Query: 67 TTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADWTN-- 124
T T I LAI I AGS INL I +T T+ G + + + T+
Sbjct: 75 ATYPT--HGIIKWLAIQITVTAGSSSINLANVTISMTYHGVAASLTYVGLENIGNATSPK 132
Query: 125 ----------GAVNVFNETIWENINGTKFG---VGVVVDSDKSMLSNKASPGMNSGDLAV 171
G NVFN + + ING G ++V SD + P ++ D
Sbjct: 133 NVYGFNSAVGGTNNVFNASYFNTINGVSNGSKHFAILVLSDPTNSLTAQYPVISYQDQVD 192
Query: 172 LLINTKLAFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEGIELQ 222
LL+N F GGI V G++ P G+ VI P ++ S+ I+LQ
Sbjct: 193 LLVNVSAVF---GGITEGQAVSGQVQAPVGSPGVIQFTAPESFVSDVIQLQ 240
>sp|P95318|FLA3_METVA FLAGELLIN B3 PRECURSOR >gi|1679698|gb|AAC27727.1| (U76620) FlaB3
[Methanococcus vannielii]
Length = 207
Score = 118 bits (293), Expect = 5e-26
Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 24/214 (11%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA+GIGTLI+FIAMVLVAAVAA V+I+T+G LQ +A +VG E+T+ V+SGL+++ + G
Sbjct: 9 KKGAVGIGTLIIFIAMVLVAAVAASVIINTAGNLQHKASAVGQESTKQVASGLQVMRVVG 68
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGG-EDTVA 120
+A T + K+ + PN G E I+L+ + + L+ S F + + +
Sbjct: 69 HASNKT--------QLDKIGAIVTPNVGGE-IDLSTSIVTLSDGSAKHSFVYDSTKHKLV 119
Query: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTKLAF 180
D NG+ ++FNET W G FGV V+ DSD S S +P +N GD +L +
Sbjct: 120 D--NGSDSLFNET-W--ATGNYFGVLVLQDSDGS-ASVPDNPTINYGDKVILTLEM---- 169
Query: 181 NKYGGIPPNTKVVGKILPPHGAGTVIDLITPATY 214
I TKV G+++P +G+ +I+ T + +
Sbjct: 170 ----NINATTKVSGEVIPEYGSPGIINFRTQSVF 199
>sp|P27805|FLA3_METVO FLAGELLIN B3 PRECURSOR >gi|99144|pir||D41316 flagellin B3 precursor
- Methanococcus voltae >gi|150064|gb|AAA73076.1|
(M72148) flagellin [Methanococcus voltae]
Length = 239
Score = 118 bits (292), Expect = 7e-26
Identities = 82/244 (33%), Positives = 127/244 (51%), Gaps = 36/244 (14%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA+GIGTLI+FIA+VLVAAVAA V+I+T+G LQ +A VG ETT+ V+SGL+++ I
Sbjct: 9 KKGAVGIGTLIIFIALVLVAAVAASVIINTAGKLQHKAAVVGQETTQQVASGLQVVKI-- 66
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTF------GG 115
TG++ Q N+ K+AI ++PN G E I+L T + + + + G
Sbjct: 67 ------TGHSVDQYNLDKIAILVSPNIGDE-IDLATTVVTFSTDDRKMSLLYDSSNASNG 119
Query: 116 EDTVADWTNGAVNVFNET------IW-----------ENINGTKFGVGVVVDSDKSMLSN 158
NG ++F W ++ N KFG+ V+ D D S+ +
Sbjct: 120 GKVRLSTANGTSDIFKYDDVYAIGAWPFEDPTYGQSDQDPNEKKFGIVVLQDMDNSV--S 177
Query: 159 KASPGMNSGDLAVLLINTKLAFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATYSSEG 218
P +N GD +L IN + I ++ G+++P GA +ID TP Y++
Sbjct: 178 GEHPTVNYGDKVLLAINIGNIVGE--NIGNRIRIQGEVVPEFGAPGIIDFTTPPVYANRV 235
Query: 219 IELQ 222
+ LQ
Sbjct: 236 VALQ 239
>sp|P27802|FLAA_METVO FLAGELLIN A PRECURSOR >gi|99141|pir||A41316 flagellin A precursor -
Methanococcus voltae >gi|150061|gb|AAA73073.1| (M72148)
flagellin [Methanococcus voltae]
Length = 219
Score = 111 bits (275), Expect = 7e-24
Identities = 80/218 (36%), Positives = 115/218 (52%), Gaps = 23/218 (10%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
++GA G+GTLIVFIAMVLVAAVAA VLI+TSG+LQQ+A S G E+T VS+GL++
Sbjct: 10 KKGATGVGTLIVFIAMVLVAAVAASVLINTSGFLQQKASSTGTESTEQVSTGLKMFQ--- 66
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVAD 121
T + I +L IY+ P+ GS+P++L T++++ + T T +
Sbjct: 67 ------TSGKLNEPIIDRLTIYVTPSPGSKPVDLKNTKLLMN-RWTFQPPPVSYSSTYFE 119
Query: 122 WTNGAV-NVFNETIWEN---INGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLIN-T 176
N + +V W N + FGV V+ D D S + SP + GD+AV+ IN T
Sbjct: 120 NNNKQIFDVTGSKAWNNGAILPEYNFGVIVIQDDDGSCTAE--SPVIGKGDMAVITINCT 177
Query: 177 KLAFNKYGGIPPNTKVVGKILPPHGAGTVIDLITPATY 214
L + P T++ G + G T I P Y
Sbjct: 178 NL------DLAPRTRLNGYLQSEIGFKTQFTYILPNAY 209
>sp|O58284|FLA3_PYRHO PROBABLE FLAGELLIN PH0549 >gi|7443274|pir||A71169 probable
flagellin B precursor - Pyrococcus horikoshii
>gi|3256955|dbj|BAA29638.1| (AP000002) 334aa long
hypothetical flagellin B precursor [Pyrococcus
horikoshii]
Length = 334
Score = 109 bits (271), Expect = 2e-23
Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 5/113 (4%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
M++GA+GIGTLIVFIAMVLVAAVAA VLI+TSGYLQQ++ + G +TT++V+SG+++ +
Sbjct: 1 MKKGAVGIGTLIVFIAMVLVAAVAAAVLINTSGYLQQKSQATGRQTTQEVASGIKVTRVV 60
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTF 113
G A + T T IQ +LA+YI PNAGS I+L + RI L+ IF +
Sbjct: 61 GKA-DSATNPTYIQ----ELAVYITPNAGSSGIDLTKVRITLSDGQKQAIFKY 108
>sp|P13077|FLA4_HALHA FLAGELLIN B2 PRECURSOR >gi|81040|pir||D28944 flagellin B2 precursor
[validated] - Halobacterium salinarum
>gi|148767|gb|AAA72644.1| (M19884) flagellin B2
[Halobacterium halobium]
Length = 196
Score = 88.2 bits (215), Expect = 7e-17
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+GYLQ + + G E + VS+ + I+S +G
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADW 122
+T+G+T + N L + A AG++ INL+++ I T T+ G T AD
Sbjct: 71 V--DTSGSTEV-VNYANLTVRQA--AGADNINLSKSTIQWIGPDTATTLTYDG--TTADA 123
Query: 123 TNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTK 177
N N + + + +V+D+ + + G+ +G+ L + T+
Sbjct: 124 ENFTTNSIKGDNADVLVDQSDRIEIVMDA-----AEITTNGLKAGEEVQLTVTTQ 173
>pir||C75063 flagellin b2 precursor. PAB1378 - Pyrococcus abyssi (strain Orsay)
>gi|5458913|emb|CAB50400.1| (AJ248287) FLAGELLIN B2
PRECURSOR. [Pyrococcus abyssi]
Length = 175
Score = 86.6 bits (211), Expect = 2e-16
Identities = 63/143 (44%), Positives = 79/143 (55%), Gaps = 19/143 (13%)
Query: 2 RRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG 61
RRGAIGIGTLIVFIAMVLVAAVAA VLI+TSG+LQ RA +VG E TR VS+G + +
Sbjct: 13 RRGAIGIGTLIVFIAMVLVAAVAAAVLINTSGFLQTRASTVGKEQTRQVSTGFILKDAY- 71
Query: 62 YAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRII-----LTVKSTMVIFTFGGE 116
TG TI + + GS P+++++T II LT ST F +
Sbjct: 72 -----VTGTNTIN-------LLVTLPTGSYPVDISRTVIIVNGKQLTYGSTANTTNFSAK 119
Query: 117 DTVADWTNGAVNVFNETIWENIN 139
V + NG + TI N
Sbjct: 120 PLVGE-INGDIVQPGSTILITFN 141
>sp|P13074|FLA1_HALHA FLAGELLIN A1 PRECURSOR >gi|81037|pir||A28944 flagellin A1 precursor
[validated] - Halobacterium salinarum
>gi|148763|gb|AAA72641.1| (M19883) flagellin A1
[Halobacterium halobium] >gi|10580564|gb|AAG19424.1|
(AE005036) flagellin A1 precursor; FlaA1a [Halobacterium
sp. NRC-1]
Length = 196
Score = 85.4 bits (208), Expect = 5e-16
Identities = 62/179 (34%), Positives = 96/179 (52%), Gaps = 20/179 (11%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+G+LQ + + G E + VS+ + I+S +G
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYGN 70
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADW 122
+ +T +N+T + AG++ INL+++ I T T+ G + AD
Sbjct: 71 VKTASGTDTVDYANLT-----VRQAAGADNINLSKSTIQWIGPDTATTLTYDG--STADA 123
Query: 123 TNGAVNVFNETIWENINGTKFGVGVVVDSDKSMLSNKASP----GMNSGDLAVLLINTK 177
N E+I G V +V SD+ + A+ G+ +G+ L + T+
Sbjct: 124 ENFTT--------ESIKGNNADV-LVEQSDRIKIVMDAASITTNGLKAGEEVQLTVTTQ 173
>emb|CAB93655.1| (AJ277988) flagellin subunit 1 [Natrialba magadii]
Length = 201
Score = 83.1 bits (202), Expect = 2e-15
Identities = 47/96 (48%), Positives = 64/96 (65%), Gaps = 5/96 (5%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+G LQ +A + G E+T VS L I+S+ G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVSDRLDIVSVSG- 68
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQT 98
+ + I +++ A GS+P++LNQT
Sbjct: 69 ----DVDDPDDPTQINNISMVTATAPGSDPVDLNQT 100
>sp|P13076|FLA3_HALHA FLAGELLIN B1 PRECURSOR >gi|81039|pir||C28944 flagellin B1 precursor
[validated] - Halobacterium salinarum
>gi|148766|gb|AAA72643.1| (M19884) flagellin B1
[Halobacterium halobium] >gi|10580517|gb|AAG19383.1|
(AE005033) flagellin B1 precursor; FlaB1 [Halobacterium
sp. NRC-1]
Length = 193
Score = 81.1 bits (197), Expect = 1e-14
Identities = 60/178 (33%), Positives = 91/178 (50%), Gaps = 21/178 (11%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+GYLQ + + G E + VS+ + I+S +G
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYG- 69
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADW 122
N N+T + AG++ INL ++ I T+
Sbjct: 70 ---NVNNEKVDYVNLT-----VRQAAGADNINLTKSTIQWIGPDRATTLTYS-------- 113
Query: 123 TNGAVNVFNETIWENINGTKFGVGVVVDSDK---SMLSNKASPGMNSGDLAVLLINTK 177
+N ++ E+I G+ V +V SD+ M ++ S + +GD L + T+
Sbjct: 114 SNSPSSLGENFTTESIKGSSADV-LVDQSDRIKVIMYASGVSSNLGAGDEVQLTVTTQ 170
>sp|Q48309|FLA4_HALSA FLAGELLIN B2 >gi|1333716|emb|CAA28975.1| (X05383) flagellin
[Halobacterium salinarum]
Length = 181
Score = 80.8 bits (196), Expect = 1e-14
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 12/170 (7%)
Query: 8 IGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGYAPKNT 67
IGTLIVFIAMVLVAA+AAGVLI+T+GYLQ + + G E + VS+ + I+S +G +T
Sbjct: 1 IGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYGNV--DT 58
Query: 68 TGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVADWTNGAV 127
+G+T + N L + A AG++ INL+++ I T T+ G T AD N
Sbjct: 59 SGSTEV-VNYANLTVRQA--AGADNINLSKSTIQWIGPDTATTLTYDG--TTADAENFTT 113
Query: 128 NVFNETIWENINGTKFGVGVVVDSDKSMLSNKASPGMNSGDLAVLLINTK 177
N + + + +V+D+ + + G+ +G+ L + T+
Sbjct: 114 NSIKGDNADVLVDQSDRIEIVMDA-----AEITTNGLKAGEEVQLTVTTQ 158
>sp|P13078|FLA5_HALHA FLAGELLIN B3 PRECURSOR >gi|81041|pir||E28944 flagellin B3 precursor
[validated] - Halobacterium salinarum
>gi|148768|gb|AAA72645.1| (M19884) flagellin B3
[Halobacterium halobium]
Length = 193
Score = 80.0 bits (194), Expect = 2e-14
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 25/180 (13%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+GYLQ + + G E + VS+ + I+S +G
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGYLQSKGSATGEEASAQVSNRINIVSAYG- 69
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRI--ILTVKSTMVIFTFGGEDTVA 120
N N+T + AG++ INL ++ I I K+T + ++
Sbjct: 70 ---NVNSEKVDYVNLT-----VRQAAGADNINLTKSTIQWIGPDKATTLTYS-------- 113
Query: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDK---SMLSNKASPGMNSGDLAVLLINTK 177
+N ++ E+I G V +V SD+ M ++ S + SG+ L + T+
Sbjct: 114 --SNSPSSLGENFTTESIKGNNADV-LVEQSDRIKVIMYASGVSSTLGSGEEVQLTVTTQ 170
>sp|P13075|FLA2_HALHA FLAGELLIN A2 PRECURSOR >gi|81038|pir||B28944 flagellin A2 precursor
[validated] - Halobacterium salinarum
>gi|148764|gb|AAA72642.1| (M19883) flagellin A2
[Halobacterium halobium]
Length = 194
Score = 77.6 bits (188), Expect = 1e-13
Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 24/180 (13%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+G+LQ + + G E + VS+ + I+S +G
Sbjct: 11 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGFLQSKGSATGEEASAQVSNRINIVSAYG- 69
Query: 63 APKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRI--ILTVKSTMVIFTFGGEDTVA 120
N N+T + AG++ INL+++ I I K+T + + T
Sbjct: 70 ---NVNNEEVDYVNLT-----VRQAAGADNINLSKSTIQWIGPDKATTLTHANAADKTTL 121
Query: 121 DWTNGAVNVFNETIWENINGTKFGVGVVVDSDK---SMLSNKASPGMNSGDLAVLLINTK 177
FN T +I G V +V SD+ M + S + +GD L + T+
Sbjct: 122 G------EEFNTT---SIKGNNDNV-LVQQSDRIKVIMYAGGVSSKLGAGDEVQLTVTTQ 171
>gb|AAG19556.1| (AE005045) flagellin A1 precursor; FlaA1b [Halobacterium sp. NRC-1]
Length = 207
Score = 74.1 bits (179), Expect = 1e-12
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 1 MRRGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIW 60
MRRG +GIGTL+VF+AM+LVAA+AA L+ G LQ R + G E V++G+ + +
Sbjct: 4 MRRGQVGIGTLVVFMAMILVAAMAASTLVDIGGMLQSRGDATGEEAVGQVTNGVSVTGAF 63
Query: 61 GYAPKNTTGNTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTVA 120
G N T + ++ + I + +AGS +N V V + + T
Sbjct: 64 G-TITNATDDPFTDGTVSDIEIVVGQSAGSGNVN---------VSDVTVDWVGPRQATTL 113
Query: 121 DWTNGAVN 128
WT+G N
Sbjct: 114 SWTDGTAN 121
>sp|O93718|FLA2_NATMA FLAGELLIN B2 PRECURSOR >gi|4138259|emb|CAA12418.1| (AJ225175) FlaB2
protein [Natrialba magadii] >gi|8250515|emb|CAB93656.1|
(AJ277988) flagellin subunit 2 [Natrialba magadii]
Length = 259
Score = 72.6 bits (175), Expect = 4e-12
Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 53/257 (20%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVL++T+G LQ +A + G E+T VS + G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLMNTAGMLQSQAEATGEESTDLVSERIDTTIAVGT 69
Query: 63 APKNTTG--NTTIQSNITKLAIYIAPNAGSEPINLNQTRIILTVKSTMVIFTFGGEDTV- 119
+ + + ++ +++I + G++ I+LN+T I V+ G E+ V
Sbjct: 70 VSTHVADGEDGADRGDLAEISIGVTGAPGADDIDLNETII-------QVVGPEGAENLVM 122
Query: 120 ADWTNGAVNVFNETIWENINGTKFGVGVVV---DSDKSMLSNKASPGM------------ 164
AD +N +E W+ + T G D+D + ++ G
Sbjct: 123 ADGSND----MSEAGWDETSTTDIGSTESTDQGDTDDDVNASNIESGYFAVENEDGYFVE 178
Query: 165 --------NSGDLAVLLINTKLA----FNKYGGIPP----NTKVVG-------KILPPHG 201
N+G+L + + N K+A + GI P V G I+ P G
Sbjct: 179 GSDAVLDDNNGELTI-VFNPKVAPFGEADDVSGITPGDLHEDDVFGAGDEASVDIVSPSG 237
Query: 202 AGTVIDLITPATYSSEG 218
A T ++L +P +S G
Sbjct: 238 ATTSVELNSPDLFSEPG 254
>emb|CAB93657.1| (AJ277988) flagellin subunit 3 [Natrialba magadii]
Length = 395
Score = 71.8 bits (173), Expect = 6e-12
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWG- 61
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+G LQ +A + G E+T VS L I S G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQTQAEATGEESTDQVSDRLEISSTSGD 69
Query: 62 YAPKNTTG 69
++ NT G
Sbjct: 70 FSDVNTLG 77
>emb|CAB93658.1| (AJ277988) flagellin subunit 4 [Natrialba magadii]
Length = 261
Score = 71.8 bits (173), Expect = 6e-12
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 3 RGAIGIGTLIVFIAMVLVAAVAAGVLISTSGYLQQRAMSVGLETTRDVSSGLRIISIWGY 62
RG +GIGTLIVFIAMVLVAA+AAGVLI+T+G LQ +A + G E+T VS + + G
Sbjct: 10 RGQVGIGTLIVFIAMVLVAAIAAGVLINTAGMLQSQAEATGEESTDLVSERIDSTTAVGI 69
Query: 63 APKNTTGNT--TIQSNITKLAIYIAPNAGSEPINLNQT--RIILTVKSTMVIFTFGGEDT 118
+ + + ++ + ++ AGS+ I+L++T +++ ++ G+D
Sbjct: 70 VSETEVSEEAGADRGELEEIRLGVSGAAGSDNIDLSETIIQVVGPQGQDNLVMADPGDDE 129
Query: 119 VADWTNGAVNVFNE 132
+ +G V V +E
Sbjct: 130 IDANDDGFVTVTDE 143
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82282547
Number of Sequences: 2977
Number of extensions: 3350812
Number of successful extensions: 7968
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7859
Number of HSP's gapped (non-prelim): 44
length of query: 222
length of database: 189,106,746
effective HSP length: 57
effective length of query: 165
effective length of database: 154,992,987
effective search space: 25573842855
effective search space used: 25573842855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)