BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1381 (flaC-like) DE:FLAGELLA-RELATED PROTEIN C
(160 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75062 flagella-related protein C PAB1381 - Pyrococcus abys... 305 2e-82
pir||D71169 hypothetical protein PH0552 - Pyrococcus horikoshii ... 284 4e-76
sp|O06636|FLAC_METVO PUTATIVE FLAGELLA-RELATED PROTEIN C >gi|112... 83 2e-15
sp|Q58304|FLAC_METJA PUTATIVE FLAGELLA-RELATED PROTEIN C >gi|212... 76 1e-13
>pir||H75062 flagella-related protein C PAB1381 - Pyrococcus abyssi (strain
Orsay) >gi|5458910|emb|CAB50397.1| (AJ248287)
FLAGELLA-RELATED PROTEIN C [Pyrococcus abyssi]
Length = 160
Score = 305 bits (772), Expect = 2e-82
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MALDFLSSLFKKKKEEEKREGTTFEEVTVEELESRVEEREQNEQIEQIMERLNEIENDLP 60
MALDFLSSLFKKKKEEEKREGTTFEEVTVEELESRVEEREQNEQIEQIMERLNEIENDLP
Sbjct: 1 MALDFLSSLFKKKKEEEKREGTTFEEVTVEELESRVEEREQNEQIEQIMERLNEIENDLP 60
Query: 61 RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSEVQE 120
RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSEVQE
Sbjct: 61 RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSEVQE 120
Query: 121 LRKQIEEIRMELAQIKNDIKVLAGYGVDIDSILYEVLAEV 160
LRKQIEEIRMELAQIKNDIKVLAGYGVDIDSILYEVLAEV
Sbjct: 121 LRKQIEEIRMELAQIKNDIKVLAGYGVDIDSILYEVLAEV 160
>pir||D71169 hypothetical protein PH0552 - Pyrococcus horikoshii
>gi|3256958|dbj|BAA29641.1| (AP000002) 163aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 163
Score = 284 bits (718), Expect = 4e-76
Identities = 144/160 (90%), Positives = 158/160 (98%)
Query: 1 MALDFLSSLFKKKKEEEKREGTTFEEVTVEELESRVEEREQNEQIEQIMERLNEIENDLP 60
MALDFL+SLFKKK++EE+R+ TFEEVTVEELESRVEE++QNEQIEQIMERLN+IENDLP
Sbjct: 4 MALDFLTSLFKKKEKEEERKEETFEEVTVEELESRVEEKQQNEQIEQIMERLNDIENDLP 63
Query: 61 RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSEVQE 120
RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSE+QE
Sbjct: 64 RVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSSEIQE 123
Query: 121 LRKQIEEIRMELAQIKNDIKVLAGYGVDIDSILYEVLAEV 160
L+KQIEE++MELAQ+KNDIKVLAGYGVD+DSILYEVLAEV
Sbjct: 124 LKKQIEELKMELAQVKNDIKVLAGYGVDLDSILYEVLAEV 163
>sp|O06636|FLAC_METVO PUTATIVE FLAGELLA-RELATED PROTEIN C >gi|11282779|pir||T44948
flagella-related protein C homolog [imported] -
Methanococcus voltae >gi|2104775|gb|AAB57827.1| (U97040)
putative flagella-related protein C [Methanococcus
voltae]
Length = 188
Score = 82.7 bits (201), Expect = 2e-15
Identities = 39/168 (23%), Positives = 96/168 (56%), Gaps = 12/168 (7%)
Query: 4 DFLSSLFKKKKEEEKREGTTFEEVTVEE----LESRVEEREQNEQI---EQIMERLNEIE 56
+ + + +K K +K + T E+ + +E L+ N+ + E+++ ++ E+E
Sbjct: 6 EIIDDIKQKIKLGKKNDTTPLEDDSEDEFSFVLDEETTAESDNDLVAANEELLAKMGELE 65
Query: 57 NDLPRVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEINPFKEQLSQESSLSS 116
+ P++++ + N++K+ + +R +I +++ +D+M LYEVVS +INPF ++
Sbjct: 66 SKFPKIEMMVTNLRKENENLRSDIHNINENFQDMMALYEVVSNQINPFIGISKVTATSME 125
Query: 117 EVQELRKQIEEIRMELAQIKNDIKVLAG-----YGVDIDSILYEVLAE 159
+V+++ + ++ + +++ND+ +LA + +D+D ++ E+LAE
Sbjct: 126 KVEKIEHESTNLKKRVEELQNDVVILANVYLQEHDIDLDGVINEILAE 173
>sp|Q58304|FLAC_METJA PUTATIVE FLAGELLA-RELATED PROTEIN C >gi|2128559|pir||F64411
hypothetical protein MJ0894 - Methanococcus jannaschii
>gi|1499725|gb|AAB98897.1| (U67533) flagella-related
protein C, putative [Methanococcus jannaschii]
Length = 141
Score = 76.5 bits (185), Expect = 1e-13
Identities = 36/122 (29%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 EQIEQIMERLNEIENDLPRVKISIDNIKKQIQEIREEIERLDKTIKDIMMLYEVVSQEIN 102
E E ++ ++N+IE+ LP+++ SI+N++K+ + +R E+ ++++ ++DIM LYEVVS +IN
Sbjct: 2 ETTEGLLAKVNDIESKLPKLESSINNLRKENEMLRVELNKINENLQDIMALYEVVSNQIN 61
Query: 103 PFKEQLSQESSLSSEVQELRKQIEEIRMELAQIKNDIKVLAG-----YGVDIDSILYEVL 157
PF ++ +++ L + + ++ + ++ ND+ +L +++D I+ EVL
Sbjct: 62 PFIGVSKITATSLEKLERLETEYKRLKKTVEELTNDLIILGSLYLHQLDINLDEIIEEVL 121
Query: 158 AE 159
E
Sbjct: 122 EE 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.310 0.131 0.321
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46869165
Number of Sequences: 2977
Number of extensions: 1763536
Number of successful extensions: 38055
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38039
Number of HSP's gapped (non-prelim): 4
length of query: 160
length of database: 189,106,746
effective HSP length: 66
effective length of query: 94
effective length of database: 149,606,604
effective search space: 14063020776
effective search space used: 14063020776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 161 (67.1 bits)