BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1384 (flaG-like) DE:PUTATIVE FLAGELLA-RELATED PROTEIN G
         (164 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75062 probable flagella-related protein g PAB1384 - Pyroco...   325  1e-88
pir||G71169 hypothetical protein PH0555 - Pyrococcus horikoshii ...   285  2e-76
sp|Q58308|FLAG_METJA PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|212...    92  4e-18
sp|O06640|FLAG_METVO PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|112...    84  1e-15

>pir||E75062 probable flagella-related protein g PAB1384 - Pyrococcus abyssi
           (strain Orsay) >gi|5458907|emb|CAB50394.1| (AJ248287)
           PUTATIVE FLAGELLA-RELATED PROTEIN G [Pyrococcus abyssi]
           Length = 164
           
 Score =  325 bits (825), Expect = 1e-88
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60
           MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF
Sbjct: 1   MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60

Query: 61  AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120
           AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN
Sbjct: 61  AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120

Query: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
           SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI
Sbjct: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164


>pir||G71169 hypothetical protein PH0555 - Pyrococcus horikoshii
           >gi|3256961|dbj|BAA29644.1| (AP000002) 164aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 164
           
 Score =  285 bits (721), Expect = 2e-76
 Identities = 140/164 (85%), Positives = 152/164 (92%)

Query: 1   MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60
           MP GGELM+AGGPASELIMFIVAVIIAGSVAGALAYVT DLANSMKDRG MLADSLRVDF
Sbjct: 1   MPDGGELMTAGGPASELIMFIVAVIIAGSVAGALAYVTNDLANSMKDRGTMLADSLRVDF 60

Query: 61  AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120
           AIINDP+ IPVSGTGPY YTFY+KN+GKD I+F+ NS+QVFIDGNIIP ANLTFTDVNGN
Sbjct: 61  AIINDPSKIPVSGTGPYTYTFYVKNIGKDSIAFSSNSIQVFIDGNIIPPANLTFTDVNGN 120

Query: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
           SI+SL+PGEVG I+VTLGNAL  GYHR+QVVL+NGK RVLIFKI
Sbjct: 121 SISSLDPGEVGAIQVTLGNALDPGYHRIQVVLENGKERVLIFKI 164


>sp|Q58308|FLAG_METJA PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|2128563|pir||B64412
           hypothetical protein MJ0898 - Methanococcus jannaschii
           >gi|1591573|gb|AAB98901.1| (U67533) flagella-related
           protein G, putative [Methanococcus jannaschii]
           Length = 154
           
 Score = 91.7 bits (224), Expect = 4e-18
 Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 10  AGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDFAIINDPNNI 69
           A    SE++MF+  ++IA  VAG L   T  ++ ++  +G+ LA  L  DF IINDP +I
Sbjct: 5   ASSAMSEIVMFVAVLLIAAFVAGILTTSTYKISLNINKKGDALATKLSQDFEIINDPGDI 64

Query: 70  PVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGNSITSLNPGE 129
            V  +       YIKN GKD I F  +S  V IDG+I+           G++I  L+PG+
Sbjct: 65  -VRNSSAGTIALYIKNTGKDPIIFTNDSFTVIIDGSIVEINTTNQLTSPGSNI--LSPGD 121

Query: 130 VGVIKVTLGNALSAGYHRLQVVLKNGKRRVL 160
           VG I V   N    GYHR++V+ + G  R++
Sbjct: 122 VGEIVV---NYNETGYHRIKVISECGISRII 149


>sp|O06640|FLAG_METVO PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|11281629|pir||T44952
           flagella-related protein G homolog [imported] -
           Methanococcus voltae >gi|2104779|gb|AAB57831.1| (U97040)
           putative flagella-related protein G [Methanococcus
           voltae]
           Length = 150
           
 Score = 83.9 bits (204), Expect = 1e-15
 Identities = 52/151 (34%), Positives = 82/151 (53%), Gaps = 9/151 (5%)

Query: 15  SELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDFAIINDPNNIPVSGT 74
           SE+I+F+  +II  +V+G LA  T  ++  ++ RG+ L+  L  DF IINDP  +  + T
Sbjct: 7   SEIILFVSVLIITAAVSGILATSTHKISLGLEQRGDALSSQLTKDFEIINDPGYVLKNAT 66

Query: 75  GPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNG-NSITSLNPGEVGVI 133
                  Y+KN GK  I+F+   + V +DGN +  +N   T V G +S+  L   +VG +
Sbjct: 67  D--TTMIYLKNTGKSPITFDKEVISVLVDGNPVEISN---TYVEGDSSVRVLGSSKVGKL 121

Query: 134 KVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
            +T     ++GYHR +VV   G  R    +I
Sbjct: 122 HITYN---TSGYHRFKVVTSEGIARTFTGEI 149


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62052613
Number of Sequences: 2977
Number of extensions: 2574181
Number of successful extensions: 8284
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8278
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 189,106,746
effective HSP length: 55
effective length of query: 109
effective length of database: 156,189,961
effective search space: 17024705749
effective search space used: 17024705749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)