BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1384 (flaG-like) DE:PUTATIVE FLAGELLA-RELATED PROTEIN G
(164 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75062 probable flagella-related protein g PAB1384 - Pyroco... 325 1e-88
pir||G71169 hypothetical protein PH0555 - Pyrococcus horikoshii ... 285 2e-76
sp|Q58308|FLAG_METJA PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|212... 92 4e-18
sp|O06640|FLAG_METVO PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|112... 84 1e-15
>pir||E75062 probable flagella-related protein g PAB1384 - Pyrococcus abyssi
(strain Orsay) >gi|5458907|emb|CAB50394.1| (AJ248287)
PUTATIVE FLAGELLA-RELATED PROTEIN G [Pyrococcus abyssi]
Length = 164
Score = 325 bits (825), Expect = 1e-88
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60
MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF
Sbjct: 1 MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60
Query: 61 AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120
AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN
Sbjct: 61 AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120
Query: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI
Sbjct: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
>pir||G71169 hypothetical protein PH0555 - Pyrococcus horikoshii
>gi|3256961|dbj|BAA29644.1| (AP000002) 164aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 164
Score = 285 bits (721), Expect = 2e-76
Identities = 140/164 (85%), Positives = 152/164 (92%)
Query: 1 MPTGGELMSAGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDF 60
MP GGELM+AGGPASELIMFIVAVIIAGSVAGALAYVT DLANSMKDRG MLADSLRVDF
Sbjct: 1 MPDGGELMTAGGPASELIMFIVAVIIAGSVAGALAYVTNDLANSMKDRGTMLADSLRVDF 60
Query: 61 AIINDPNNIPVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGN 120
AIINDP+ IPVSGTGPY YTFY+KN+GKD I+F+ NS+QVFIDGNIIP ANLTFTDVNGN
Sbjct: 61 AIINDPSKIPVSGTGPYTYTFYVKNIGKDSIAFSSNSIQVFIDGNIIPPANLTFTDVNGN 120
Query: 121 SITSLNPGEVGVIKVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
SI+SL+PGEVG I+VTLGNAL GYHR+QVVL+NGK RVLIFKI
Sbjct: 121 SISSLDPGEVGAIQVTLGNALDPGYHRIQVVLENGKERVLIFKI 164
>sp|Q58308|FLAG_METJA PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|2128563|pir||B64412
hypothetical protein MJ0898 - Methanococcus jannaschii
>gi|1591573|gb|AAB98901.1| (U67533) flagella-related
protein G, putative [Methanococcus jannaschii]
Length = 154
Score = 91.7 bits (224), Expect = 4e-18
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 10 AGGPASELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDFAIINDPNNI 69
A SE++MF+ ++IA VAG L T ++ ++ +G+ LA L DF IINDP +I
Sbjct: 5 ASSAMSEIVMFVAVLLIAAFVAGILTTSTYKISLNINKKGDALATKLSQDFEIINDPGDI 64
Query: 70 PVSGTGPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNGNSITSLNPGE 129
V + YIKN GKD I F +S V IDG+I+ G++I L+PG+
Sbjct: 65 -VRNSSAGTIALYIKNTGKDPIIFTNDSFTVIIDGSIVEINTTNQLTSPGSNI--LSPGD 121
Query: 130 VGVIKVTLGNALSAGYHRLQVVLKNGKRRVL 160
VG I V N GYHR++V+ + G R++
Sbjct: 122 VGEIVV---NYNETGYHRIKVISECGISRII 149
>sp|O06640|FLAG_METVO PUTATIVE FLAGELLA-RELATED PROTEIN G >gi|11281629|pir||T44952
flagella-related protein G homolog [imported] -
Methanococcus voltae >gi|2104779|gb|AAB57831.1| (U97040)
putative flagella-related protein G [Methanococcus
voltae]
Length = 150
Score = 83.9 bits (204), Expect = 1e-15
Identities = 52/151 (34%), Positives = 82/151 (53%), Gaps = 9/151 (5%)
Query: 15 SELIMFIVAVIIAGSVAGALAYVTTDLANSMKDRGEMLADSLRVDFAIINDPNNIPVSGT 74
SE+I+F+ +II +V+G LA T ++ ++ RG+ L+ L DF IINDP + + T
Sbjct: 7 SEIILFVSVLIITAAVSGILATSTHKISLGLEQRGDALSSQLTKDFEIINDPGYVLKNAT 66
Query: 75 GPYNYTFYIKNVGKDIISFNPNSVQVFIDGNIIPSANLTFTDVNG-NSITSLNPGEVGVI 133
Y+KN GK I+F+ + V +DGN + +N T V G +S+ L +VG +
Sbjct: 67 D--TTMIYLKNTGKSPITFDKEVISVLVDGNPVEISN---TYVEGDSSVRVLGSSKVGKL 121
Query: 134 KVTLGNALSAGYHRLQVVLKNGKRRVLIFKI 164
+T ++GYHR +VV G R +I
Sbjct: 122 HITYN---TSGYHRFKVVTSEGIARTFTGEI 149
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62052613
Number of Sequences: 2977
Number of extensions: 2574181
Number of successful extensions: 8284
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8278
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 189,106,746
effective HSP length: 55
effective length of query: 109
effective length of database: 156,189,961
effective search space: 17024705749
effective search space used: 17024705749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)