BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1385 (flaH-like) DE:PUTATIVE FLAGELLA-RELATED PROTEIN H (232 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||D75062 probable flagella-related protein h PAB1385 - Pyroco... 447 e-125 pir||H71169 hypothetical protein PH0556 - Pyrococcus horikoshii ... 434 e-121 sp|Q58309|FLAH_METJA PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|212... 214 6e-55 sp|O06641|FLAH_METVO PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|112... 204 9e-52 emb|CAC11698.1| (AL445064) hypothetical protein [Thermoplasma ac... 128 5e-29 gi|11498655 conserved hypothetical protein [Archaeoglobus fulgid... 101 1e-20 gb|AAK42472.1| Flagella-related protein H, putative (FlaH) [Sulf... 91 9e-18 gb|AAG19377.1| (AE005032) flagella-related protein H; FapH [Halo... 83 2e-15 pir||B72577 hypothetical protein APE1898 - Aeropyrum pernix (str... 75 6e-13 >pir||D75062 probable flagella-related protein h PAB1385 - Pyrococcus abyssi (strain Orsay) >gi|5458906|emb|CAB50393.1| (AJ248287) PUTATIVE FLAGELLA-RELATED PROTEIN H [Pyrococcus abyssi] Length = 232 Score = 447 bits (1138), Expect = e-125 Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV Sbjct: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60 Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ Sbjct: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120 Query: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST Sbjct: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180 Query: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV Sbjct: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232 >pir||H71169 hypothetical protein PH0556 - Pyrococcus horikoshii >gi|3256962|dbj|BAA29645.1| (AP000002) 232aa long hypothetical protein [Pyrococcus horikoshii] Length = 232 Score = 434 bits (1104), Expect = e-121 Identities = 222/232 (95%), Positives = 228/232 (97%) Query: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60 MVEELLKI LK DELHRRLGGGIPAGTIMLIEGDRGTGKSI+SQRLLYGFLMNGYTSSY+ Sbjct: 1 MVEELLKIELKGDELHRRLGGGIPAGTIMLIEGDRGTGKSIISQRLLYGFLMNGYTSSYI 60 Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ Sbjct: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120 Query: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180 DV+IIDSFSSVLSREQDV AVRNFLMYIK+LSSLGKVIILTANPEELSRDVMFLLEEAST Sbjct: 121 DVIIIDSFSSVLSREQDVGAVRNFLMYIKRLSSLGKVIILTANPEELSRDVMFLLEEAST 180 Query: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232 LL+RLNVRVFGGDLKNSATIVKYNNAKG FQKIIPFRVEP+VGLVVEIAAVV Sbjct: 181 LLMRLNVRVFGGDLKNSATIVKYNNAKGVFQKIIPFRVEPRVGLVVEIAAVV 232 >sp|Q58309|FLAH_METJA PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|2128564|pir||C64412 hypothetical protein MJ0899 - Methanococcus jannaschii >gi|1591574|gb|AAB98902.1| (U67533) flagella-related protein H, putative [Methanococcus jannaschii] Length = 233 Score = 214 bits (540), Expect = 6e-55 Identities = 101/230 (43%), Positives = 163/230 (69%) Query: 2 VEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVS 61 + EL +I L D+L +R+GGGIP G++++IEG+ TGKS+L QRL YGFL N Y+ +YVS Sbjct: 3 IMELARIDLSRDDLDKRIGGGIPHGSLIIIEGEESTGKSVLCQRLAYGFLQNRYSVTYVS 62 Query: 62 SQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQD 121 +Q TT+E+IKQM S++Y + L+ L+++ +YPL++ ++ FL +++ +++D Sbjct: 63 TQLTTLEFIKQMNSLNYSINKKLLSGALLYIPVYPLIADNKKKDGFLKKVMETRAFYEKD 122 Query: 122 VVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTL 181 V+I DS S++++ + V + + + K++++L K+II T NP+EL V+ ++ ++T+ Sbjct: 123 VIIFDSISALIANDASEVNVDDLMAFFKRITALKKIIICTVNPKELPESVLTIIRTSATM 182 Query: 182 LIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231 LIR + FGGDLKN A I+KYN A G++QK I FRVEPK+G+ VEIA+V Sbjct: 183 LIRTELFTFGGDLKNLAKILKYNMAPGSYQKNIVFRVEPKIGIAVEIASV 232 >sp|O06641|FLAH_METVO PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|11281628|pir||T44953 flagella-related protein H homolog [imported] - Methanococcus voltae >gi|2104780|gb|AAB57832.1| (U97040) putative flagella-related protein H [Methanococcus voltae] Length = 230 Score = 204 bits (513), Expect = 9e-52 Identities = 96/225 (42%), Positives = 157/225 (69%) Query: 7 KITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTT 66 KI L+ D++H+R GGGIP +I+ IEG+ +GKSILSQRL Y FL N Y+ SY+S+Q TT Sbjct: 5 KIELERDDVHKRFGGGIPLCSIIHIEGEESSGKSILSQRLSYCFLQNSYSLSYISTQSTT 64 Query: 67 VEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQDVVIID 126 E++KQM S+ Y + L+ L+++ +YPL+S +++ F+ + + +++D++I D Sbjct: 65 TEFVKQMTSLKYMINKKLLNGNLLYIPVYPLISDNTQKDDFIKKSMTTRAFYEKDIIIFD 124 Query: 127 SFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRLN 186 S+++S + V + + ++K+++S+ K+I+ T NP+ELS V+ +L A+T++I+ Sbjct: 125 CLSTLISNDASEVQVGDLMSFLKRIASMNKIIVYTINPKELSDQVVTMLRTAATMVIKTE 184 Query: 187 VRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231 FGG+LKNSA IVKYN A G FQK++ FRV+P +G+ VEI++V Sbjct: 185 TFSFGGNLKNSAKIVKYNMAAGPFQKVMVFRVDPGLGIAVEISSV 229 >emb|CAC11698.1| (AL445064) hypothetical protein [Thermoplasma acidophilum] Length = 223 Score = 128 bits (319), Expect = 5e-29 Identities = 76/224 (33%), Positives = 127/224 (55%), Gaps = 10/224 (4%) Query: 10 LKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEY 69 + DEL +R+GGG+ G + I GD GK++LS RL YGFL NG + +YVSSQ E+ Sbjct: 7 IDGDELDKRMGGGVYVGQLFTIFGDNSEGKTLLSLRLAYGFLKNGISITYVSSQMPVREF 66 Query: 70 IKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQDVVIIDSFS 129 I ++ Y V+ +I +++++ P+ R L L+ R+ ++ V+IIDS + Sbjct: 67 ISFSDALGYPVLNSVISGSMLYIT--PVFMLRRTRRANLDELINNDRIKEKSVLIIDSLN 124 Query: 130 SVLSREQDVRAVRNFLMYIKKLS--SLGKVIILTANPEELSRDVMFLLEEASTLLIRLNV 187 + R+ ++ + Y++KL S +V+I+TAN L + + + ST ++ L+ Sbjct: 125 PGMFRDFEINS------YMEKLRKFSENRVVIITANQASLDDATVLRINQLSTTIVTLHS 178 Query: 188 RVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231 + GG ++ +VKY + Q+ IPFRVEP GL+VEI++V Sbjct: 179 KELGGVKRHFIDLVKYPMVVRSIQQSIPFRVEPGRGLIVEISSV 222 >gi|11498655 conserved hypothetical protein [Archaeoglobus fulgidus] >gi|7483080|pir||B69381 conserved hypothetical protein AF1050 - Archaeoglobus fulgidus >gi|2649536|gb|AAB90187.1| (AE001030) conserved hypothetical protein [Archaeoglobus fulgidus] Length = 244 Score = 101 bits (248), Expect = 1e-20 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 15/233 (6%) Query: 3 EELLKITLKSD--ELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60 EE K L S E+ +RLGGGIP G++ LIEG+ TGKS+L Q+ +YG LM+G+ +Y Sbjct: 10 EEKKKNILSSGNGEIDKRLGGGIPLGSLTLIEGENDTGKSVLCQQFVYGGLMSGHNIAYY 69 Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPL-LSGV----SEERKFLSRLLGEP 115 +++ T +++QM S+S DV F ++ ++P+ L G+ + R L+ + Sbjct: 70 TTENTIKSFLRQMESLSLDVSDFY---AWGYLRVFPVHLEGIDWSTEQMRSILNLVANHI 126 Query: 116 RLWDQDVVIIDSFS--SVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMF 173 + +++ IIDS + + S E D V FL +K L GK I++T + D + Sbjct: 127 KTIRENIAIIDSLTMFTTYSTEDD---VLEFLTRLKNLCDNGKTILITLHQHAFKEDTLV 183 Query: 174 LLEEASTLLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVV 226 + A + L G + + K A+ I+ F V P GL + Sbjct: 184 RIRSACDCHLFLRKEQVGDRYVSVLEVSKIRGARKTTGNIVSFEVHPGFGLKI 236 >gb|AAK42472.1| Flagella-related protein H, putative (FlaH) [Sulfolobus solfataricus] Length = 234 Score = 91.3 bits (223), Expect = 9e-18 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 14/222 (6%) Query: 12 SDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEYIK 71 +++L RRL G +P +++IEGD GTGKS+LS + YG L+ G ++++ T+ +Y+K Sbjct: 12 NEDLDRRLSG-LPFPALIMIEGDHGTGKSVLSAQFCYGLLIGGKKGYIITTEQTSKDYLK 70 Query: 72 QMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGE------PRLWDQDVVII 125 +M + D+IPF ++ L + PL + L+ + E R + D +II Sbjct: 71 KMKDVKIDLIPFFLKGVL---GIAPLNTNKFNWNSRLANKILEIIIDFIKRRKNMDFIII 127 Query: 126 DSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRL 185 DS S+++ +++ + F+ + L LGK+I+ T +P+ + ++ + + +L Sbjct: 128 DSL-SIVATFAEIKQILQFMKDARVLVDLGKLILFTVHPDVFNEELKSRITSIVDVYFKL 186 Query: 186 NVRVFGG-DLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVV 226 + GG +K I +GA I F ++P +G+ V Sbjct: 187 SATSIGGRRIKVLERIKTIGGIQGA--DAISFDIDPALGIKV 226 >gb|AAG19377.1| (AE005032) flagella-related protein H; FapH [Halobacterium sp. NRC-1] Length = 213 Score = 83.5 bits (203), Expect = 2e-15 Identities = 55/212 (25%), Positives = 98/212 (45%), Gaps = 22/212 (10%) Query: 42 LSQRLLYGFLMNGYTSSYVSSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSL------Y 95 +SQR YG + VS++ T +I QM S+SYDV L+ + L+F+ Sbjct: 1 MSQRFSYGLCEEENAVTLVSTELTVRGFIDQMHSLSYDVEEHLLNENLLFLEADVDTGKS 60 Query: 96 PLLSGVSEE------RKFLSRLLGEPRLWDQDVVIIDSFSSVLSRE----------QDVR 139 L G S R+ L RL+ R+WD DVV++D+F ++L + ++ + Sbjct: 61 ALRGGASSNDDDGSRRQLLKRLMEADRMWDADVVVVDTFDAILRNDPNFEALVRENEERQ 120 Query: 140 AVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRLNVRVFGGDLKNSAT 199 A + + + L S GKVI+LT +P + + + + + + L + G D++ S Sbjct: 121 AALEIISFFRDLVSQGKVIVLTVDPSTVDEEAIGPFRSIADVYLELEMVEVGNDVRRSIA 180 Query: 200 IVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231 + ++ I + V G+V+E +V Sbjct: 181 VRRFAGMGEQVGDSIGYSVRSGTGIVIESRSV 212 >pir||B72577 hypothetical protein APE1898 - Aeropyrum pernix (strain K1) >gi|5105590|dbj|BAA80903.1| (AP000062) 245aa long hypothetical protein [Aeropyrum pernix] Length = 245 Score = 75.3 bits (182), Expect = 6e-13 Identities = 59/220 (26%), Positives = 99/220 (44%), Gaps = 11/220 (5%) Query: 12 SDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEYIK 71 ++E +LGGG+P ++++IEG GTGK+ LSQ L G L G V ++ T YI Sbjct: 20 NEEFDIKLGGGVPFPSLLIIEGPHGTGKTALSQLFLKGALDMGLRGLAVVTESTIRGYIL 79 Query: 72 QMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERK-------FLSRLLGEPRLWDQDVVI 124 + + + +R +L S G R+ +SR L E +V++ Sbjct: 80 KSEAAGISLTEHFLRGRLDVYSTQ--FEGSRWGRRSATVLLDLISRFL-ESESRRYEVLL 136 Query: 125 IDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIR 184 +DS S + +R V NF ++ ++ GK+++LT + L D+ ++ Sbjct: 137 VDSLSHIAIYSSPIR-VLNFFNTVRLIADRGKLVVLTLHEGVLREDLTTRARATCDGYMK 195 Query: 185 LNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGL 224 L++ G IVK A+ F I F V+P G+ Sbjct: 196 LSLASLAGKTVKVLKIVKLKGARSQFDPTITFDVDPSFGI 235 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.322 0.140 0.382 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76470329 Number of Sequences: 2977 Number of extensions: 2922427 Number of successful extensions: 9515 Number of sequences better than 1.0e-10: 9 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 9504 Number of HSP's gapped (non-prelim): 9 length of query: 232 length of database: 189,106,746 effective HSP length: 57 effective length of query: 175 effective length of database: 154,992,987 effective search space: 27123772725 effective search space used: 27123772725 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.9 bits) S2: 163 (67.9 bits)