BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1385 (flaH-like) DE:PUTATIVE FLAGELLA-RELATED PROTEIN H
(232 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75062 probable flagella-related protein h PAB1385 - Pyroco... 447 e-125
pir||H71169 hypothetical protein PH0556 - Pyrococcus horikoshii ... 434 e-121
sp|Q58309|FLAH_METJA PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|212... 214 6e-55
sp|O06641|FLAH_METVO PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|112... 204 9e-52
emb|CAC11698.1| (AL445064) hypothetical protein [Thermoplasma ac... 128 5e-29
gi|11498655 conserved hypothetical protein [Archaeoglobus fulgid... 101 1e-20
gb|AAK42472.1| Flagella-related protein H, putative (FlaH) [Sulf... 91 9e-18
gb|AAG19377.1| (AE005032) flagella-related protein H; FapH [Halo... 83 2e-15
pir||B72577 hypothetical protein APE1898 - Aeropyrum pernix (str... 75 6e-13
>pir||D75062 probable flagella-related protein h PAB1385 - Pyrococcus abyssi
(strain Orsay) >gi|5458906|emb|CAB50393.1| (AJ248287)
PUTATIVE FLAGELLA-RELATED PROTEIN H [Pyrococcus abyssi]
Length = 232
Score = 447 bits (1138), Expect = e-125
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60
MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV
Sbjct: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60
Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120
SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ
Sbjct: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120
Query: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180
DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST
Sbjct: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180
Query: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232
LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV
Sbjct: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232
>pir||H71169 hypothetical protein PH0556 - Pyrococcus horikoshii
>gi|3256962|dbj|BAA29645.1| (AP000002) 232aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 232
Score = 434 bits (1104), Expect = e-121
Identities = 222/232 (95%), Positives = 228/232 (97%)
Query: 1 MVEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60
MVEELLKI LK DELHRRLGGGIPAGTIMLIEGDRGTGKSI+SQRLLYGFLMNGYTSSY+
Sbjct: 1 MVEELLKIELKGDELHRRLGGGIPAGTIMLIEGDRGTGKSIISQRLLYGFLMNGYTSSYI 60
Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120
SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ
Sbjct: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQ 120
Query: 121 DVVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEAST 180
DV+IIDSFSSVLSREQDV AVRNFLMYIK+LSSLGKVIILTANPEELSRDVMFLLEEAST
Sbjct: 121 DVIIIDSFSSVLSREQDVGAVRNFLMYIKRLSSLGKVIILTANPEELSRDVMFLLEEAST 180
Query: 181 LLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAVV 232
LL+RLNVRVFGGDLKNSATIVKYNNAKG FQKIIPFRVEP+VGLVVEIAAVV
Sbjct: 181 LLMRLNVRVFGGDLKNSATIVKYNNAKGVFQKIIPFRVEPRVGLVVEIAAVV 232
>sp|Q58309|FLAH_METJA PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|2128564|pir||C64412
hypothetical protein MJ0899 - Methanococcus jannaschii
>gi|1591574|gb|AAB98902.1| (U67533) flagella-related
protein H, putative [Methanococcus jannaschii]
Length = 233
Score = 214 bits (540), Expect = 6e-55
Identities = 101/230 (43%), Positives = 163/230 (69%)
Query: 2 VEELLKITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVS 61
+ EL +I L D+L +R+GGGIP G++++IEG+ TGKS+L QRL YGFL N Y+ +YVS
Sbjct: 3 IMELARIDLSRDDLDKRIGGGIPHGSLIIIEGEESTGKSVLCQRLAYGFLQNRYSVTYVS 62
Query: 62 SQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQD 121
+Q TT+E+IKQM S++Y + L+ L+++ +YPL++ ++ FL +++ +++D
Sbjct: 63 TQLTTLEFIKQMNSLNYSINKKLLSGALLYIPVYPLIADNKKKDGFLKKVMETRAFYEKD 122
Query: 122 VVIIDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTL 181
V+I DS S++++ + V + + + K++++L K+II T NP+EL V+ ++ ++T+
Sbjct: 123 VIIFDSISALIANDASEVNVDDLMAFFKRITALKKIIICTVNPKELPESVLTIIRTSATM 182
Query: 182 LIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231
LIR + FGGDLKN A I+KYN A G++QK I FRVEPK+G+ VEIA+V
Sbjct: 183 LIRTELFTFGGDLKNLAKILKYNMAPGSYQKNIVFRVEPKIGIAVEIASV 232
>sp|O06641|FLAH_METVO PUTATIVE FLAGELLA-RELATED PROTEIN H >gi|11281628|pir||T44953
flagella-related protein H homolog [imported] -
Methanococcus voltae >gi|2104780|gb|AAB57832.1| (U97040)
putative flagella-related protein H [Methanococcus
voltae]
Length = 230
Score = 204 bits (513), Expect = 9e-52
Identities = 96/225 (42%), Positives = 157/225 (69%)
Query: 7 KITLKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTT 66
KI L+ D++H+R GGGIP +I+ IEG+ +GKSILSQRL Y FL N Y+ SY+S+Q TT
Sbjct: 5 KIELERDDVHKRFGGGIPLCSIIHIEGEESSGKSILSQRLSYCFLQNSYSLSYISTQSTT 64
Query: 67 VEYIKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQDVVIID 126
E++KQM S+ Y + L+ L+++ +YPL+S +++ F+ + + +++D++I D
Sbjct: 65 TEFVKQMTSLKYMINKKLLNGNLLYIPVYPLISDNTQKDDFIKKSMTTRAFYEKDIIIFD 124
Query: 127 SFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRLN 186
S+++S + V + + ++K+++S+ K+I+ T NP+ELS V+ +L A+T++I+
Sbjct: 125 CLSTLISNDASEVQVGDLMSFLKRIASMNKIIVYTINPKELSDQVVTMLRTAATMVIKTE 184
Query: 187 VRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231
FGG+LKNSA IVKYN A G FQK++ FRV+P +G+ VEI++V
Sbjct: 185 TFSFGGNLKNSAKIVKYNMAAGPFQKVMVFRVDPGLGIAVEISSV 229
>emb|CAC11698.1| (AL445064) hypothetical protein [Thermoplasma acidophilum]
Length = 223
Score = 128 bits (319), Expect = 5e-29
Identities = 76/224 (33%), Positives = 127/224 (55%), Gaps = 10/224 (4%)
Query: 10 LKSDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEY 69
+ DEL +R+GGG+ G + I GD GK++LS RL YGFL NG + +YVSSQ E+
Sbjct: 7 IDGDELDKRMGGGVYVGQLFTIFGDNSEGKTLLSLRLAYGFLKNGISITYVSSQMPVREF 66
Query: 70 IKQMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGEPRLWDQDVVIIDSFS 129
I ++ Y V+ +I +++++ P+ R L L+ R+ ++ V+IIDS +
Sbjct: 67 ISFSDALGYPVLNSVISGSMLYIT--PVFMLRRTRRANLDELINNDRIKEKSVLIIDSLN 124
Query: 130 SVLSREQDVRAVRNFLMYIKKLS--SLGKVIILTANPEELSRDVMFLLEEASTLLIRLNV 187
+ R+ ++ + Y++KL S +V+I+TAN L + + + ST ++ L+
Sbjct: 125 PGMFRDFEINS------YMEKLRKFSENRVVIITANQASLDDATVLRINQLSTTIVTLHS 178
Query: 188 RVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231
+ GG ++ +VKY + Q+ IPFRVEP GL+VEI++V
Sbjct: 179 KELGGVKRHFIDLVKYPMVVRSIQQSIPFRVEPGRGLIVEISSV 222
>gi|11498655 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483080|pir||B69381 conserved hypothetical protein
AF1050 - Archaeoglobus fulgidus
>gi|2649536|gb|AAB90187.1| (AE001030) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 244
Score = 101 bits (248), Expect = 1e-20
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 15/233 (6%)
Query: 3 EELLKITLKSD--ELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYV 60
EE K L S E+ +RLGGGIP G++ LIEG+ TGKS+L Q+ +YG LM+G+ +Y
Sbjct: 10 EEKKKNILSSGNGEIDKRLGGGIPLGSLTLIEGENDTGKSVLCQQFVYGGLMSGHNIAYY 69
Query: 61 SSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSLYPL-LSGV----SEERKFLSRLLGEP 115
+++ T +++QM S+S DV F ++ ++P+ L G+ + R L+ +
Sbjct: 70 TTENTIKSFLRQMESLSLDVSDFY---AWGYLRVFPVHLEGIDWSTEQMRSILNLVANHI 126
Query: 116 RLWDQDVVIIDSFS--SVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMF 173
+ +++ IIDS + + S E D V FL +K L GK I++T + D +
Sbjct: 127 KTIRENIAIIDSLTMFTTYSTEDD---VLEFLTRLKNLCDNGKTILITLHQHAFKEDTLV 183
Query: 174 LLEEASTLLIRLNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVV 226
+ A + L G + + K A+ I+ F V P GL +
Sbjct: 184 RIRSACDCHLFLRKEQVGDRYVSVLEVSKIRGARKTTGNIVSFEVHPGFGLKI 236
>gb|AAK42472.1| Flagella-related protein H, putative (FlaH) [Sulfolobus
solfataricus]
Length = 234
Score = 91.3 bits (223), Expect = 9e-18
Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 14/222 (6%)
Query: 12 SDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEYIK 71
+++L RRL G +P +++IEGD GTGKS+LS + YG L+ G ++++ T+ +Y+K
Sbjct: 12 NEDLDRRLSG-LPFPALIMIEGDHGTGKSVLSAQFCYGLLIGGKKGYIITTEQTSKDYLK 70
Query: 72 QMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERKFLSRLLGE------PRLWDQDVVII 125
+M + D+IPF ++ L + PL + L+ + E R + D +II
Sbjct: 71 KMKDVKIDLIPFFLKGVL---GIAPLNTNKFNWNSRLANKILEIIIDFIKRRKNMDFIII 127
Query: 126 DSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRL 185
DS S+++ +++ + F+ + L LGK+I+ T +P+ + ++ + + +L
Sbjct: 128 DSL-SIVATFAEIKQILQFMKDARVLVDLGKLILFTVHPDVFNEELKSRITSIVDVYFKL 186
Query: 186 NVRVFGG-DLKNSATIVKYNNAKGAFQKIIPFRVEPKVGLVV 226
+ GG +K I +GA I F ++P +G+ V
Sbjct: 187 SATSIGGRRIKVLERIKTIGGIQGA--DAISFDIDPALGIKV 226
>gb|AAG19377.1| (AE005032) flagella-related protein H; FapH [Halobacterium sp.
NRC-1]
Length = 213
Score = 83.5 bits (203), Expect = 2e-15
Identities = 55/212 (25%), Positives = 98/212 (45%), Gaps = 22/212 (10%)
Query: 42 LSQRLLYGFLMNGYTSSYVSSQYTTVEYIKQMMSISYDVIPFLIRKKLVFVSL------Y 95
+SQR YG + VS++ T +I QM S+SYDV L+ + L+F+
Sbjct: 1 MSQRFSYGLCEEENAVTLVSTELTVRGFIDQMHSLSYDVEEHLLNENLLFLEADVDTGKS 60
Query: 96 PLLSGVSEE------RKFLSRLLGEPRLWDQDVVIIDSFSSVLSRE----------QDVR 139
L G S R+ L RL+ R+WD DVV++D+F ++L + ++ +
Sbjct: 61 ALRGGASSNDDDGSRRQLLKRLMEADRMWDADVVVVDTFDAILRNDPNFEALVRENEERQ 120
Query: 140 AVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIRLNVRVFGGDLKNSAT 199
A + + + L S GKVI+LT +P + + + + + + L + G D++ S
Sbjct: 121 AALEIISFFRDLVSQGKVIVLTVDPSTVDEEAIGPFRSIADVYLELEMVEVGNDVRRSIA 180
Query: 200 IVKYNNAKGAFQKIIPFRVEPKVGLVVEIAAV 231
+ ++ I + V G+V+E +V
Sbjct: 181 VRRFAGMGEQVGDSIGYSVRSGTGIVIESRSV 212
>pir||B72577 hypothetical protein APE1898 - Aeropyrum pernix (strain K1)
>gi|5105590|dbj|BAA80903.1| (AP000062) 245aa long
hypothetical protein [Aeropyrum pernix]
Length = 245
Score = 75.3 bits (182), Expect = 6e-13
Identities = 59/220 (26%), Positives = 99/220 (44%), Gaps = 11/220 (5%)
Query: 12 SDELHRRLGGGIPAGTIMLIEGDRGTGKSILSQRLLYGFLMNGYTSSYVSSQYTTVEYIK 71
++E +LGGG+P ++++IEG GTGK+ LSQ L G L G V ++ T YI
Sbjct: 20 NEEFDIKLGGGVPFPSLLIIEGPHGTGKTALSQLFLKGALDMGLRGLAVVTESTIRGYIL 79
Query: 72 QMMSISYDVIPFLIRKKLVFVSLYPLLSGVSEERK-------FLSRLLGEPRLWDQDVVI 124
+ + + +R +L S G R+ +SR L E +V++
Sbjct: 80 KSEAAGISLTEHFLRGRLDVYSTQ--FEGSRWGRRSATVLLDLISRFL-ESESRRYEVLL 136
Query: 125 IDSFSSVLSREQDVRAVRNFLMYIKKLSSLGKVIILTANPEELSRDVMFLLEEASTLLIR 184
+DS S + +R V NF ++ ++ GK+++LT + L D+ ++
Sbjct: 137 VDSLSHIAIYSSPIR-VLNFFNTVRLIADRGKLVVLTLHEGVLREDLTTRARATCDGYMK 195
Query: 185 LNVRVFGGDLKNSATIVKYNNAKGAFQKIIPFRVEPKVGL 224
L++ G IVK A+ F I F V+P G+
Sbjct: 196 LSLASLAGKTVKVLKIVKLKGARSQFDPTITFDVDPSFGI 235
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76470329
Number of Sequences: 2977
Number of extensions: 2922427
Number of successful extensions: 9515
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9504
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 189,106,746
effective HSP length: 57
effective length of query: 175
effective length of database: 154,992,987
effective search space: 27123772725
effective search space used: 27123772725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)