BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1386 (flaI-like) DE:PUTATIVE FLAGELLA-RELATED PROTEIN I
(537 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75062 probable flagella-related protein I PAB1386 - Pyroco... 1089 0.0
pir||A71170 hypothetical protein PH0557 - Pyrococcus horikoshii ... 1063 0.0
sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900 >gi|2128565|pir... 746 0.0
pir||T44954 flagella-related protein I homolog [imported] - Meth... 703 0.0
emb|CAC11699.1| (AL445064) conserved hypothetical protein [Therm... 614 e-174
pir||H72576 hypothetical protein APE1896 - Aeropyrum pernix (str... 490 e-137
gb|AAG19376.1| (AE005032) type II secretion system protein; GspE... 458 e-128
gi|11498654 type II secretion system protein (gspE-4) [Archaeogl... 439 e-122
gb|AAK42471.1| Flagella-related protein I, putative (FlaI) [Sulf... 413 e-114
gi|11498267 type II secretion system protein (gspE-2) [Archaeogl... 287 3e-76
gi|11498601 type II secretion system protein (gspE-3) [Archaeogl... 269 6e-71
gi|11497950 type II secretion system protein (gspE-1) [Archaeogl... 268 1e-70
gb|AAG19279.1| (AE005024) type II secretion system protein; GspE... 254 2e-66
pir||D72529 hypothetical protein APE2208 - Aeropyrum pernix (str... 240 3e-62
pir||G69094 secretory protein kinase - Methanobacterium thermoau... 224 2e-57
pir||B75050 secretory protein kinase PAB1457 - Pyrococcus abyssi... 211 2e-53
pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii ... 209 6e-53
sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287 >gi|2128765|pir... 203 6e-51
gb|AAK42798.1| Type II secretion system protein, virB homolog (g... 193 4e-48
gb|AAK40475.1| Type II secretion system protein, virB homolog (g... 183 5e-45
pir||S75369 hypothetical protein c04002 - Sulfolobus solfataricu... 183 5e-45
gb|AAD38172.2|AF152598_1 (AF152598) TadA [Actinobacillus actinom... 177 3e-43
gb|AAG33866.1|AF317389_1 (AF317389) putative type IV NTPase [Hae... 176 7e-43
pir||G72658 probable Vir B11 APE0695 - Aeropyrum pernix (strain ... 175 1e-42
gb|AAF40195.1|AF229646_7 (AF229646) CpaF [Caulobacter crescentus] 173 3e-42
sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi|2129090|pir... 167 3e-40
emb|CAC12033.1| (AL445065) export type III nucleotide binding pr... 164 2e-39
gi|10956073 secretory protein kinase [Chlorobium limicola] >gi|1... 159 6e-38
pir||E83108 probable type II secretion system protein PA4302 [im... 152 1e-35
emb|CAB92602.1| (AL356813) putative secretory protein [Streptomy... 144 2e-33
pir||T36677 probable secretory protein - Streptomyces coelicolor... 118 2e-25
gb|AAG18825.1| (AE004986) type II secretion system protein; GspE... 108 2e-22
emb|CAB77317.1| (AL160312) putative protein kinase [Streptomyces... 107 4e-22
dbj|BAA97435.1| (AB045234) component of type IV secretion system... 101 2e-20
dbj|BAA97442.1| (AB045235) component of type IV secretion system... 99 1e-19
pir||G64460 hypothetical protein MJ1288 - Methanococcus jannaschii 96 1e-18
sp|Q58684|YC88_METJA HYPOTHETICAL PROTEIN MJ1288 >gi|2826386|gb|... 96 1e-18
pir||D70788 probable trbB protein - Mycobacterium tuberculosis (... 94 3e-18
gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog [Bartonella ... 92 2e-17
emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumophila] 91 3e-17
pir||G71684 virB11 protein (virB11) RP292 - Rickettsia prowazeki... 91 3e-17
gi|10955211 TrbB [Enterobacter aerogenes] >gi|7444255|pir||T0849... 90 6e-17
dbj|BAA28705.1| (AB011800) virB11 [Agrobacterium tumefaciens] 90 7e-17
gb|AAA88655.1| (J03216) unknown protein [Plasmid Ti] 90 7e-17
gi|10954837 Probable trbB gene [Agrobacterium tumefaciens] >gi|2... 88 3e-16
sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BXAG58 virB11... 87 4e-16
gi|10954971 Probable virB11 gene [Agrobacterium tumefaciens] >gi... 87 4e-16
gi|10955153 virB11 [Agrobacterium tumefaciens] >gi|138453|sp|P05... 87 5e-16
gi|10955104 trbB [Agrobacterium tumefaciens] >gi|1730018|sp|P549... 87 5e-16
pir||C44020 hypothetical protein trbB [imported] - plasmid RK2 >... 85 2e-15
gb|AAA26405.1| (L05600) klbA [Plasmid RK2] 85 2e-15
sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBB >gi... 85 2e-15
gi|10956306 pXO1-59 [Bacillus anthracis] >gi|7474299|pir||C59098... 85 2e-15
gi|10956726 conjugal transfer protein [Xylella fastidiosa] >gi|1... 85 2e-15
gi|10954435 ATPase [Actinobacillus actinomycetemcomitans] >gi|10... 84 3e-15
gi|10956415 pXO2-25 [Bacillus anthracis] >gi|6470176|gb|AAF13630... 84 4e-15
pir||F47301 VirB11 homolog - Bordetella pertussis 84 4e-15
gi|10954776 probable trbB gene [Agrobacterium rhizogenes] >gi|10... 81 3e-14
gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobium etli] 81 3e-14
emb|CAC12030.1| (AL445065) export type III nucleotide binding pr... 79 1e-13
gb|AAF73904.1|AF226278_11 (AF226278) VirB11 [Brucella abortus] 78 2e-13
pir||E64585 virB11 homolog - Helicobacter pylori (strain 26695) ... 76 7e-13
pir||G71927 cag island protein, DNA transfer protein - Helicobac... 76 7e-13
gb|AAD15210.1| (M36786) virulence protein [Plasmid pTiC58] >gi|8... 76 1e-12
gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucella suis] 75 2e-12
sp|P25953|CMG1_BACSU COMG OPERON PROTEIN 1 >gi|98254|pir||B30338... 75 2e-12
pir||B70469 type IV pilus assembly protein TapB - Aquifex aeolic... 73 6e-12
>pir||C75062 probable flagella-related protein I PAB1386 - Pyrococcus abyssi
(strain Orsay) >gi|5458905|emb|CAB50392.1| (AJ248287)
PUTATIVE FLAGELLA-RELATED PROTEIN I [Pyrococcus abyssi]
Length = 537
Score = 1089 bits (2785), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MAEAVSGTLDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPI 60
MAEAVSGTLDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPI
Sbjct: 1 MAEAVSGTLDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPI 60
Query: 61 FIHIYGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNL 120
FIHIYGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNL
Sbjct: 61 FIHIYGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNL 120
Query: 121 FEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVS 180
FEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVS
Sbjct: 121 FEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVS 180
Query: 181 VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD 240
VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD
Sbjct: 181 VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD 240
Query: 241 VSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT 300
VSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT
Sbjct: 241 VSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT 300
Query: 301 LNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN 360
LNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN
Sbjct: 301 LNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN 360
Query: 361 YIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIAL 420
YIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIAL
Sbjct: 361 YIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIAL 420
Query: 421 FQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENK 480
FQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENK
Sbjct: 421 FQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENK 480
Query: 481 IAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSFRI 537
IAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSFRI
Sbjct: 481 IAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSFRI 537
>pir||A71170 hypothetical protein PH0557 - Pyrococcus horikoshii
>gi|3256963|dbj|BAA29646.1| (AP000002) 537aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 537
Score = 1063 bits (2719), Expect = 0.0
Identities = 518/537 (96%), Positives = 533/537 (98%)
Query: 1 MAEAVSGTLDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPI 60
MAEAVSGTL+EAMRRNPHLRKYVEEFRRKYGK PEFHVQLTT+MRDIPYPNIIYPVGDPI
Sbjct: 1 MAEAVSGTLEEAMRRNPHLRKYVEEFRRKYGKVPEFHVQLTTEMRDIPYPNIIYPVGDPI 60
Query: 61 FIHIYGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNL 120
FIHIYGDPQTETQYIVIEPRIE REEEEKY+LIKDRILELAPTR+IPEEQEEFERFLD+L
Sbjct: 61 FIHIYGDPQTETQYIVIEPRIENREEEEKYKLIKDRILELAPTRDIPEEQEEFERFLDSL 120
Query: 121 FEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVS 180
FEEAVLSLVKGRKGL ITK+EMEKFRYL+KRDIIGIGPLEPIARDPYLEDIHIIGANYVS
Sbjct: 121 FEEAVLSLVKGRKGLKITKEEMEKFRYLVKRDIIGIGPLEPIARDPYLEDIHIIGANYVS 180
Query: 181 VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD 240
VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD
Sbjct: 181 VVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPD 240
Query: 241 VSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT 300
+SLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT
Sbjct: 241 ISLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTT 300
Query: 301 LNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN 360
LNAIIPFIKPGSKV+TAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN
Sbjct: 301 LNAIIPFIKPGSKVYTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN 360
Query: 361 YIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIAL 420
YIIVGEIRGAEGNIAFQAMQTGHPVM+TFHAGD+KKMIQRFTGSPINVPITFIDNLNIAL
Sbjct: 361 YIIVGEIRGAEGNIAFQAMQTGHPVMSTFHAGDVKKMIQRFTGSPINVPITFIDNLNIAL 420
Query: 421 FQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENK 480
FQQAVYVKGKFLRRVI VVEIEGYYEELGGVATRNVFEWDPV+D+HIFRGMNNSYILENK
Sbjct: 421 FQQAVYVKGKFLRRVITVVEIEGYYEELGGVATRNVFEWDPVNDRHIFRGMNNSYILENK 480
Query: 481 IAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSFRI 537
IAEIAG+EDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRG+EGLSFRI
Sbjct: 481 IAEIAGYEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGIEGLSFRI 537
>sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900 >gi|2128565|pir||D64412 hypothetical
protein MJ0900 - Methanococcus jannaschii
>gi|1591575|gb|AAB98903.1| (U67533) type II secretion
system protein [Methanococcus jannaschii]
Length = 551
Score = 746 bits (1906), Expect = 0.0
Identities = 356/542 (65%), Positives = 435/542 (79%), Gaps = 13/542 (2%)
Query: 9 LDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPIFIHIYGDP 68
L EAM+RNPHLR+Y+E F+R Y + P+F V L+ +++++ YPNIIYPVGDPIFIHI+G P
Sbjct: 10 LKEAMKRNPHLRRYIENFKRTYMRIPDFMVSLSRELKELKYPNIIYPVGDPIFIHIFGTP 69
Query: 69 QTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAV-LS 127
+T+T+YIVIEP +ET EE+ KY++I ++ILELAP E P+ EEFE L LF ++
Sbjct: 70 ETKTKYIVIEPTLETAEEKLKYKMILNKILELAPYEETPKSVEEFEEVLTRLFNACTKVT 129
Query: 128 LVKGRKG------------LTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIG 175
G +G + IT +E +KF Y++KRD+IG+G LEPI RDPYLEDIH+IG
Sbjct: 130 EAVGEEGFFQRIFRFADNKIKITPEERDKFLYILKRDLIGLGNLEPIGRDPYLEDIHVIG 189
Query: 176 ANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINI 235
VVHKIF LPTNI W+D IELADYLKNL ER+GRPVSD NPIVDGTLPDGSRINI
Sbjct: 190 PKNCHVVHKIFGMLPTNITWEDEIELADYLKNLGERMGRPVSDANPIVDGTLPDGSRINI 249
Query: 236 IYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETAS 295
IYS DVS KGPS TIRKF P+S+TQLI+WGT S E+AAYLWL +EYGMSIF+CGETAS
Sbjct: 250 IYSTDVSPKGPSFTIRKFTDVPISVTQLISWGTFSTEVAAYLWLCLEYGMSIFICGETAS 309
Query: 296 GKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAAL 355
GKTTTLNAI+PFIKP SK+F+ EDTPEV+ PHP WQ+LVTRERGPEESRVTLFDLL+AAL
Sbjct: 310 GKTTTLNAILPFIKPNSKIFSCEDTPEVKPPHPVWQQLVTRERGPEESRVTLFDLLRAAL 369
Query: 356 RSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDN 415
RSRPNYIIVGEIR E +AFQAMQTGHPV++TFHA +++KMIQR G PINVP+TF+DN
Sbjct: 370 RSRPNYIIVGEIRSVEAAVAFQAMQTGHPVLSTFHAANVRKMIQRLNGDPINVPLTFMDN 429
Query: 416 LNIALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSY 475
LN+ALFQ AVY +GK LRRV+++ EIEGYY+E+ GV TR VF+W+P D+H+F G NNSY
Sbjct: 430 LNVALFQLAVYQRGKVLRRVVSIEEIEGYYKEVDGVVTRAVFQWEPDKDRHVFTGRNNSY 489
Query: 476 ILENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSF 535
+LE KIA+ AG+EDP+ IY+EL LRARIL+ M+ +IF+Y+ V I AFY++GLEGL F
Sbjct: 490 VLEEKIAKAAGYEDPRDIYNELELRARILEEMIAREIFDYYQVRDIIWAFYEKGLEGLPF 549
Query: 536 RI 537
I
Sbjct: 550 PI 551
>pir||T44954 flagella-related protein I homolog [imported] - Methanococcus
voltae >gi|2104781|gb|AAB57833.1| (U97040) putative
flagella-related protein I [Methanococcus voltae]
Length = 552
Score = 703 bits (1795), Expect = 0.0
Identities = 338/545 (62%), Positives = 420/545 (77%), Gaps = 19/545 (3%)
Query: 12 AMRRNPHLRKYVEEFRRKYGKTPEFHVQL--TTDMRDIPYPNIIYPVGDPIFIHIYGDPQ 69
A R+NPHL++YVE F++ Y K P++ + D++ I YPN+IYP+GDP+FIH+YG P
Sbjct: 8 AQRKNPHLKRYVERFKKTYMKVPDYITDIGGLGDLKSIKYPNVIYPIGDPLFIHVYGSPN 67
Query: 70 TETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEA----- 124
T+YI IEP+++T E KY I D+ILE AP EIPE +EF + L ++F+
Sbjct: 68 QRTRYIAIEPKLDTATERAKYFEILDKILEYAPYSEIPESDDEFSKVLIDIFDTVTKVNK 127
Query: 125 ------------VLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIH 172
+++ + + ITK + +KF YL++RD+IGIG LEPI RDP +EDIH
Sbjct: 128 NANNPNKKSKLGLMNKLTNSNSIAITKVQRDKFVYLLRRDLIGIGNLEPIKRDPTIEDIH 187
Query: 173 IIGANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSR 232
+IG +VHK F LPTNI W+D+ ++++YLKNL ER+GRPVSD PIVDG++PDGSR
Sbjct: 188 VIGPKNTQLVHKTFDMLPTNIVWEDDGDMSNYLKNLCERMGRPVSDATPIVDGSMPDGSR 247
Query: 233 INIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGE 292
INI+YS DVSLKGPS TIRKF+ TP SITQ+I+WGTMS EIAAYLWL +EYGMSIFVCGE
Sbjct: 248 INILYSNDVSLKGPSFTIRKFSDTPTSITQIISWGTMSPEIAAYLWLCLEYGMSIFVCGE 307
Query: 293 TASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLK 352
TASGKTTTLNAI+PFIKP SKVF+ EDT EV+ P+P WQ+L+TRERGPEESRVTLFDLL+
Sbjct: 308 TASGKTTTLNAIMPFIKPKSKVFSCEDTAEVKPPNPVWQQLLTRERGPEESRVTLFDLLR 367
Query: 353 AALRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITF 412
AALRSRPNYIIVGEIR EG +AFQAMQTGHPV++TFHA +++KMIQR TG PIN+P TF
Sbjct: 368 AALRSRPNYIIVGEIRSVEGAVAFQAMQTGHPVLSTFHAANVRKMIQRLTGDPINIPQTF 427
Query: 413 IDNLNIALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMN 472
+DNLNIALFQ AVY +G+FLRRV+ V EIEGYY+E+ GV TR VFEWDP D H F G+N
Sbjct: 428 MDNLNIALFQLAVYTRGRFLRRVVAVEEIEGYYKEVDGVITRGVFEWDPQKDIHNFTGLN 487
Query: 473 NSYILENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEG 532
NSYILE+KIA +AG+EDP+ IYDEL LR RIL+ M+ +I++Y DV I FY+ GLEG
Sbjct: 488 NSYILEDKIATVAGYEDPREIYDELNLRVRILEEMIAREIYDYHDVLDIIWKFYENGLEG 547
Query: 533 LSFRI 537
L F I
Sbjct: 548 LPFPI 552
>emb|CAC11699.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 538
Score = 614 bits (1565), Expect = e-174
Identities = 305/529 (57%), Positives = 398/529 (74%), Gaps = 6/529 (1%)
Query: 5 VSGTLDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPIFIHI 64
VS + + A+ RNPHL +Y+ ++R + G++P F V + + ++ + + ++IYPVGDPIFIHI
Sbjct: 9 VSDSYEVAIARNPHLAEYLSKYRNETGRSPSFLVNIDSSLKSLAHVDVIYPVGDPIFIHI 68
Query: 65 YGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEA 124
Y + E +Y IEP ++ +E E I D I+ A E +EE E+ +++++++
Sbjct: 69 Y-ERGKERRYKPIEPLLKD-DEFEFMDAILDIIMSRASDYPPAENEEEQEKNIEDVYKKT 126
Query: 125 VL---SLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSV 181
V + +K R +T+ K +K Y +K++IIG+GPLEP+ RD ++EDI IG V +
Sbjct: 127 VSVGSNKIK-RNSVTLEKPLYDKMLYNVKKEIIGLGPLEPLIRDSHIEDISGIGPEDVYI 185
Query: 182 VHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDV 241
VHKIF +PT+I + L + K LSER+GRPVSD+ PIVD TLPDGSR++I+YS D+
Sbjct: 186 VHKIFGSMPTDITFGSMERLMRFSKRLSERVGRPVSDKRPIVDATLPDGSRLSIVYSTDI 245
Query: 242 SLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTL 301
S +GPS TIRKF+ PLSI LI + TMS E AAYLWLA+EYG S+FVCGETASGKTT +
Sbjct: 246 SQRGPSFTIRKFSEIPLSILNLIKYNTMSYEEAAYLWLALEYGQSVFVCGETASGKTTVV 305
Query: 302 NAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNY 361
NAIIPFI+P SK+F+AEDTPE++ P WQ+LVTRE G EESRVTL+DLL+ ALRSRPNY
Sbjct: 306 NAIIPFIRPESKIFSAEDTPEIRAPQKAWQQLVTRESGAEESRVTLYDLLRTALRSRPNY 365
Query: 362 IIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALF 421
IIVGEIRGAEG +AFQAMQTGHPV++TFHA +KKMIQRFTG+PIN+P+TF+DNLNI L
Sbjct: 366 IIVGEIRGAEGAMAFQAMQTGHPVISTFHASSVKKMIQRFTGNPINIPVTFMDNLNIVLI 425
Query: 422 QQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKI 481
QQAVYV GKFLRR ++ EIEGYYE+LGGVATR VFEWDP +D+H+FRGMNNSYILE KI
Sbjct: 426 QQAVYVGGKFLRRTTSINEIEGYYEDLGGVATRAVFEWDPSTDRHMFRGMNNSYILEEKI 485
Query: 482 AEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGL 530
A+ AG D IY+ELF RARIL+ + + KI +Y+ VY +IK FY+ L
Sbjct: 486 AKTAGLVDTSLIYNELFRRARILKDLADQKILDYYQVYEKIKEFYEGAL 534
>pir||H72576 hypothetical protein APE1896 - Aeropyrum pernix (strain K1)
>gi|5105588|dbj|BAA80901.1| (AP000062) 579aa long
hypothetical protein [Aeropyrum pernix]
Length = 579
Score = 490 bits (1248), Expect = e-137
Identities = 262/540 (48%), Positives = 346/540 (63%), Gaps = 26/540 (4%)
Query: 15 RNPHLRKYVEEFRRKYGKT-PEFHVQLTTDMRDIPYPNIIYPVGDPIFIHIYGDPQTET- 72
R +L +YV F + G+ PE ++ + M++ N+IYPVG IFIH Y DP +E+
Sbjct: 30 RPEYLEEYVRRFTSETGREEPELVEKIPSSMKNAREFNVIYPVGFGIFIHAYNDPLSESG 89
Query: 73 --QYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVL---- 126
+Y+V+EP R E+ +LI +I + + P EE +R L ++ V
Sbjct: 90 YNKYVVVEP---PRPPEDLVRLIDYKIALVLSEEDAPRSSEEKKRILLAALDKVVAVTSS 146
Query: 127 SLVKGRKG-------------LTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHI 173
+ G G + I + +Y R+ +G+GPLEP RDPYLEDI
Sbjct: 147 ERIAGGNGGNGSWQYAVKRGRIVIPERYYNYLKYHFIREKVGVGPLEPFLRDPYLEDISC 206
Query: 174 IGANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRI 233
G V VVHK+F+ L ++++++ EL D++ L E+IG+P+S P+VD TLPDGSRI
Sbjct: 207 NGVGPVYVVHKMFRSLESSVRFETEGELDDFILKLGEKIGKPISHARPVVDATLPDGSRI 266
Query: 234 NIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGET 293
NI++ DVSLKG + TIRK + P+S+TQLI WGT A IAAY+W+ +E GMS+F+CGET
Sbjct: 267 NIVFGSDVSLKGSNFTIRKVSKIPISVTQLIKWGTFDARIAAYMWMMLEEGMSVFICGET 326
Query: 294 ASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKA 353
ASGKTT+LNAI FI+P +K+ T EDT EV +PHP W R +TR G E+ VT+FDLL+A
Sbjct: 327 ASGKTTSLNAISVFIRPDAKIVTIEDTAEVVLPHPNWTRELTRNTGKPETSVTMFDLLRA 386
Query: 354 ALRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFI 413
ALR RPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHA ++ +++QR T PINVP T I
Sbjct: 387 ALRQRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAANLSRLLQRLTNHPINVPKTNI 446
Query: 414 DNLNIALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNN 473
D+LNIA FQ AV+VKG RRV+ + EI GY G +A F WDPV DK IF G
Sbjct: 447 DSLNIAWFQSAVHVKGFPARRVLEIDEIIGYDPSSGAIAAVPSFTWDPVRDKFIFSGRGA 506
Query: 474 SYILENKIAEIAGF--EDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLE 531
SY+LE KIA + G + IY+EL LR R LQ +V+ I +Y+DVY+ I Y G+E
Sbjct: 507 SYLLEEKIATMKGIPRRELSIIYEELELRRRFLQTLVDKNILDYFDVYKAIVRAYNIGVE 566
>gb|AAG19376.1| (AE005032) type II secretion system protein; GspE3 [Halobacterium
sp. NRC-1]
Length = 629
Score = 458 bits (1167), Expect = e-128
Identities = 228/404 (56%), Positives = 288/404 (70%), Gaps = 1/404 (0%)
Query: 135 LTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIK 194
+ +++ E RY + RDI+G GPLEP+ RDPY EDIH+IG V H + L T +
Sbjct: 222 IPVSETTYENIRYQLNRDIVGFGPLEPVMRDPYNEDIHVIGPTGCYVDHGTYGMLETTVD 281
Query: 195 WKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFA 254
+ E +L+N+ ER+G PVSD +PIVD TLPDGSRINIIYS DVSLKGPS TIR+
Sbjct: 282 FGTPDEFDGWLRNMGERMGDPVSDSDPIVDSTLPDGSRINIIYSDDVSLKGPSLTIRQGD 341
Query: 255 ATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKV 314
PLS+ Q+ WGT+S E+AAYLWL +E ++FV GETASGKTTTLN+I+ FI SK+
Sbjct: 342 DVPLSVGQITKWGTLSPELAAYLWLCLENEQTVFVVGETASGKTTTLNSIMSFIPRDSKI 401
Query: 315 FTAEDTPEVQVPHPTWQRLVTRE-RGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGN 373
+TAEDT EV PH TWQ+L+TRE +G + V +FDL+ AALRSRP+YIIVGE+RG EG
Sbjct: 402 YTAEDTAEVIPPHDTWQQLLTREGQGENSADVDMFDLVAAALRSRPDYIIVGEVRGEEGR 461
Query: 374 IAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYVKGKFLR 433
+AFQA QTGHPVM TFHA DI MIQRFTG PINVP TF+DN ++ALFQ V LR
Sbjct: 462 MAFQAAQTGHPVMLTFHASDIVSMIQRFTGEPINVPETFMDNADVALFQNRVKQGDDVLR 521
Query: 434 RVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGFEDPKAI 493
RV +V EIEGY +E+GGV TR F WDPV D+ +F+G NNS++LE +IA + G+ D + I
Sbjct: 522 RVTSVQEIEGYSKEMGGVVTRQAFYWDPVEDEIVFQGRNNSFVLEEQIATLLGYADTREI 581
Query: 494 YDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLEGLSFRI 537
YDE+ RA IL+R+++ + Y D I AF + G+EGL F I
Sbjct: 582 YDEMDFRAEILERIIQEDLIGYHDFNDTIAAFQRDGVEGLPFTI 625
Score = 83.9 bits (204), Expect = 4e-15
Identities = 42/117 (35%), Positives = 70/117 (58%), Gaps = 2/117 (1%)
Query: 9 LDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPIFIHIYGDP 68
L E R HL++Y++ F++ G+ PE + TD + PN++YPVG PIF H+YGD
Sbjct: 13 LRETATRYTHLQEYLQRFKQFTGEFPEL-IDEPTDDWEADKPNVVYPVGGPIFCHVYGDL 71
Query: 69 QTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAV 125
+T+Y IEP + + E ++ +++RILE + + PE + E++ ++ L EE V
Sbjct: 72 GKDTKYYTIEPEL-SGPEAAVFKNVQERILEKSVNKPAPEAEAEYDDRIEELLEETV 127
>gi|11498654 type II secretion system protein (gspE-4) [Archaeoglobus fulgidus]
>gi|7450287|pir||A69381 type II secretion system protein
(gspE-4) homolog - Archaeoglobus fulgidus
>gi|2649537|gb|AAB90188.1| (AE001030) type II secretion
system protein (gspE-4) [Archaeoglobus fulgidus]
Length = 628
Score = 439 bits (1118), Expect = e-122
Identities = 253/578 (43%), Positives = 346/578 (59%), Gaps = 64/578 (11%)
Query: 9 LDEAMRRNPHLRKYVEEFRRKYGKTPEFHVQLTTDMR-DIPYPNIIYPVGDPIFIHIYGD 67
+ + + +N HL +Y+ P+F +L D+ PN+IYP + I+IH+Y D
Sbjct: 54 MKKEVEKNLHLLEYLHILPLDKIGIPKFAPKLDRKKHGDLDRPNLIYPADEQIYIHVYPD 113
Query: 68 PQTETQ-YIVIEPRIET------------------------REEEEKYQLIKDRILELAP 102
YI IEP + T + EEK +++K+ +
Sbjct: 114 KNDMRNFYIPIEPTLLTGVDELLKEVEIRLVDYITDIDFDPEDNEEKIKILKEAL----- 168
Query: 103 TREIPEEQEEFERFLDNLFEEAVLS-----------LVKGRKG-------LTITKDEMEK 144
RE+ E ++ E F+D+ E L+ G+ G L +TK++ +
Sbjct: 169 -REVCEIVDKEESFMDDSRGEVKLTPKFRFPFRLPFWKNGKNGSRAVMGKLKVTKEQFKA 227
Query: 145 FRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADY 204
Y + RD +G+G LEP RD Y+EDI G + V HKIF+ L + I+++D L +
Sbjct: 228 LEYALIRDKVGLGVLEPYIRDKYIEDISCSGLGPIFVEHKIFKGLKSVIEFRDEETLNKF 287
Query: 205 LKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLI 264
+ L+ERIG+PV+ ++PIVD TLPDGSRINI++ D+S G + TIRKF TP S+ QLI
Sbjct: 288 IIRLAERIGKPVTYKDPIVDATLPDGSRINIVFGNDISKNGSNFTIRKFNETPFSVLQLI 347
Query: 265 AWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQ 324
+G++ IA YLWL I GMS F+CGETASGKTT LNAI FI+P +KV + EDTPE+Q
Sbjct: 348 EFGSLDYMIAGYLWLLISEGMSGFICGETASGKTTLLNAITAFIRPEAKVVSIEDTPELQ 407
Query: 325 VPHPTWQRLVTR---------ERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIA 375
VPH W R VTR E G S VT+FDLLKAALR RPNYI+VGEIRG EGNIA
Sbjct: 408 VPHKNWTREVTRGSTRAGGIGEGG--GSDVTMFDLLKAALRQRPNYILVGEIRGVEGNIA 465
Query: 376 FQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAV-YVKGKFLRR 434
FQAMQTGHPVM+TFHA ++K+IQR T PI+VP TFIDNLN + Q AV GK +RR
Sbjct: 466 FQAMQTGHPVMSTFHAATVEKLIQRLTTEPISVPKTFIDNLNFVVIQSAVRRPDGKLVRR 525
Query: 435 VINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGF--EDPKA 492
V++V EI GY + GGV+ VF+WDPV+D H+F G +SY+LE KIA G K
Sbjct: 526 VLSVSEIVGYNPQKGGVSFIEVFQWDPVTDTHVFTGYGSSYLLEQKIATRLGIPPNKKKL 585
Query: 493 IYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRGL 530
IY+E+ RA+IL+++ E + ++++ ++ I Y+ GL
Sbjct: 586 IYEEVEKRAKILKKLHEQGVTDFYEFFKSISKIYKSGL 623
>gb|AAK42471.1| Flagella-related protein I, putative (FlaI) [Sulfolobus
solfataricus]
Length = 513
Score = 413 bits (1049), Expect = e-114
Identities = 231/516 (44%), Positives = 321/516 (61%), Gaps = 20/516 (3%)
Query: 22 YVEEFRRKYGKTPEFHVQLTTDMRDIPYPNIIYPVGDPIFIHIYGDPQTE--TQYIVIEP 79
++E++ ++ + P + ++ N IY V I+IH+ + QY VIEP
Sbjct: 3 FIEDYLSRFPEKPVM-IDDPNKLKGSKNYNAIYKVDKYIYIHVQSTKAEDGYNQYTVIEP 61
Query: 80 -RIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTIT 138
R + +E EE + I P + E++ R LD + + +S+ K
Sbjct: 62 PRPKPKEIEEIEEKFAKTIGNTEPPPTVEEKEILMRRVLDKILTKIRISVPK-------- 113
Query: 139 KDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDN 198
E Y RD + G LEP+ RDP++EDI I G ++ +VHK+F + T++ ++
Sbjct: 114 ----EYAIYHFVRDKLYSGILEPLIRDPFIEDISIPGLGHIYIVHKVFGPMRTSLLIENE 169
Query: 199 IELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPL 258
EL + + +LSE+ RPVS PI+D +LPDGSR+N +Y D+S +G + T+RKF+ P+
Sbjct: 170 EELDNLIISLSEKTYRPVSHNRPIIDASLPDGSRVNFVYGIDISRRGSNLTVRKFSKIPI 229
Query: 259 SITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAE 318
S+TQLI++GT+S +AAY+W+ ++ GM++FVCGETASGKTTTLNAI FI P K+ T E
Sbjct: 230 SVTQLISFGTLSPLLAAYIWMMLDEGMNLFVCGETASGKTTTLNAITAFIPPNLKIVTIE 289
Query: 319 DTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQA 378
DTPE+ VPH W VTRE G E S V LFDLLKAALR RPNYI+VGEIR EGN+AFQA
Sbjct: 290 DTPELTVPHSNWVAEVTRETGGEGS-VKLFDLLKAALRQRPNYILVGEIRDKEGNVAFQA 348
Query: 379 MQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVY-VKGKFLRRVIN 437
MQTGH VMATFHA +I+ ++QR TG PI VP ++I+NLNIALFQ A+Y KG +RRV+
Sbjct: 349 MQTGHSVMATFHAANIRTLVQRLTGYPIEVPKSYINNLNIALFQTALYDKKGNLIRRVVE 408
Query: 438 VVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGFE--DPKAIYD 495
V EI V F +DP DK IF G +SY++ENK+A G E + +YD
Sbjct: 409 VDEIIDIDPVTNDVVYIPAFTYDPTEDKIIFAGRGSSYLIENKVAIRRGIERRNIGILYD 468
Query: 496 ELFLRARILQRMVELKIFNYWDVYREIKAFYQRGLE 531
EL LRA L+ ++ KIFNY++V+ +I Q G+E
Sbjct: 469 ELNLRAEFLKILLSKKIFNYFEVWNQILRARQFGIE 504
>gi|11498267 type II secretion system protein (gspE-2) [Archaeoglobus fulgidus]
>gi|7450288|pir||C69332 type II secretion system protein
(gspE-2) homolog - Archaeoglobus fulgidus
>gi|2649960|gb|AAB90582.1| (AE001059) type II secretion
system protein (gspE-2) [Archaeoglobus fulgidus]
Length = 511
Score = 287 bits (726), Expect = 3e-76
Identities = 182/471 (38%), Positives = 259/471 (54%), Gaps = 21/471 (4%)
Query: 62 IHIYGDPQTETQYIVIEPRIETREEEEKYQLIKD--RILELAPTR-EIPEEQEEFERFLD 118
I + + + Y +EP + + E E L D +IL L ++ E E R ++
Sbjct: 44 IIVENEDEFRNVYYALEPTVSSEEAEVISALYDDLKKILVLQDVSVDLEERAEVLVRAIE 103
Query: 119 NLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY 178
L +E +S T + + Y + RD G G ++P+ D +EDI G N
Sbjct: 104 KLSKEYAVSF---------TDNFYSRMLYYLFRDFFGYGLIDPLMEDTNVEDISCDGYNI 154
Query: 179 -VSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIY 237
+ + H+ + ++ TNI D +L + L++R G+ +S NPIVD TLPDGSR+ +
Sbjct: 155 PIFIYHQKYGNVETNIVL-DQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATF 213
Query: 238 SPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGK 297
+V+ +G S TIRKF PL+ LI GT+ + + AYLWLAIE+ S V GETASGK
Sbjct: 214 GTEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGK 273
Query: 298 TTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRS 357
TTTLNAI+ FI P +KV + EDT E+++ H W VTR G E + ++DLL+AALR
Sbjct: 274 TTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTR-TGMGEGEIDMYDLLRAALRQ 332
Query: 358 RPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLN 417
RP+YIIVGE+RG E FQAM TGH +T HAGDI +M+ R P+ VP + + L+
Sbjct: 333 RPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLD 392
Query: 418 IALFQQAVYVKGKF-LRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYI 476
IAL Q ++V+G LRR V EI G + +WDP DKHI M
Sbjct: 393 IALV-QTMWVRGNTRLRRTKEVNEILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL- 450
Query: 477 LENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQ 527
K+A+ G + +YDE+ R R L+ M++ I NY +V R I A+Y+
Sbjct: 451 --EKMADFLGV-SVQEVYDEMLSRKRYLELMLKRGIRNYKEVTRYIHAYYR 498
>gi|11498601 type II secretion system protein (gspE-3) [Archaeoglobus fulgidus]
>gi|7450290|pir||D69374 type II secretion system protein
(gspE-3) homolog - Archaeoglobus fulgidus
>gi|2649599|gb|AAB90245.1| (AE001035) type II secretion
system protein (gspE-3) [Archaeoglobus fulgidus]
Length = 569
Score = 269 bits (680), Expect = 6e-71
Identities = 170/458 (37%), Positives = 245/458 (53%), Gaps = 20/458 (4%)
Query: 64 IYGDPQTETQYIVIEPRIETREEE---EKYQLIKDRILE-LAPTREIPEEQEEFERFLDN 119
IY + + E +Y V+EPR++ E E L+KD++ E ++ +E E F D+
Sbjct: 101 IYNEEEQEYRYQVVEPRLDPYETEVYGHLSVLLKDKLEENFFEDGKVAKEVVLKETF-DD 159
Query: 120 LFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGAN-Y 178
L E G + K Y I RD + + P+ D LEDI G Y
Sbjct: 160 LISEV---------GFDLEDRSYYKIWYYIMRDFLYYDKITPLMLDKMLEDISCNGVRKY 210
Query: 179 VSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYS 238
+ V H+ + +L TN+ + D EL ++ NL+++ G+ +S P+VD T+PDGSRI +
Sbjct: 211 MYVFHRNYTNLRTNVIFDDPDELDSFVVNLAQKCGKHISIAEPMVDATMPDGSRIQMTLG 270
Query: 239 PDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKT 298
+V+ G + TIRKF P++ LIAW T S+E AYLWL IE S+ G TASGKT
Sbjct: 271 REVTDHGSTFTIRKFREEPVTPIDLIAWKTFSSEQMAYLWLCIENKKSLIFAGGTASGKT 330
Query: 299 TTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRER-GPEESRVTLFDLLKAALRS 357
T++NAI FI SK+ T EDT E+ +PH W VTR+ E+ V ++DLL+AALR
Sbjct: 331 TSMNAISLFIPRRSKIVTIEDTRELMLPHENWIPAVTRDAFHGEKGAVDMYDLLRAALRQ 390
Query: 358 RPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLN 417
RP YIIVGE+RG E FQAM TGH +T HA I I R PI VP ++ L+
Sbjct: 391 RPEYIIVGEVRGREALTLFQAMATGHTTYSTLHADSISGAIHRLENPPIGVPRPMLEALD 450
Query: 418 IALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYIL 477
I Q YV + +RR + + EI G + T VF+WD V D+H G + +
Sbjct: 451 IISIQAQTYVGDRRVRRNMEIAEIVGLDAHTKMLRTSTVFQWDSVKDEHAMVGTSKAL-- 508
Query: 478 ENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNY 515
+I G+ + + +EL R R+L+ M+E + ++
Sbjct: 509 -EEIRRQRGW-SVRELNEELERRRRVLEFMLEHNVRDF 544
>gi|11497950 type II secretion system protein (gspE-1) [Archaeoglobus fulgidus]
>gi|7450291|pir||B69292 type II secretion system protein
(gspE-1) homolog - Archaeoglobus fulgidus
>gi|2650297|gb|AAB90897.1| (AE001081) type II secretion
system protein (gspE-1) [Archaeoglobus fulgidus]
Length = 595
Score = 268 bits (677), Expect = 1e-70
Identities = 174/471 (36%), Positives = 254/471 (52%), Gaps = 24/471 (5%)
Query: 62 IHI-YGDPQTETQYIVIEPRIETREEEEKYQLIKDRILEL----APTREIPEEQEEFERF 116
+HI Y + E Y V EP++ EEEEK ++K+ I L A +EI ++ ++
Sbjct: 126 VHILYNEEDNEFIYHVNEPKLS--EEEEK--IVKNVIGRLEYYAANPKEIGDKVGTLKKK 181
Query: 117 LDNLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIG- 175
+D++ E ++L D ++ KR I+ G + PI DP +EDI G
Sbjct: 182 IDSILEAYRVNLEGS--------DYFRVLYHIFKRTIL-YGKITPIMYDPMIEDISCNGY 232
Query: 176 ANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINI 235
Y+ + H+ + +L TN+ + D EL ++ NL+++ G+ +S P+VD T+PDGSRI +
Sbjct: 233 GKYIYIFHRKYTNLRTNVIFDDPDELDSFVVNLAQKCGKHISIAEPMVDATMPDGSRIQM 292
Query: 236 IYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETAS 295
+V+ G + TIRKF P++ LIAW T S+E AYLWL IE S+ G TAS
Sbjct: 293 TLGREVTDHGSTFTIRKFREEPVTPIDLIAWKTFSSEQMAYLWLCIENKKSLIFAGGTAS 352
Query: 296 GKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRER-GPEESRVTLFDLLKAA 354
GKTT++NAI FI SK+ T EDT E+ +PH W VTR+ E+ V ++DLL+AA
Sbjct: 353 GKTTSMNAISLFIPRRSKIVTIEDTRELMLPHENWIPAVTRDAFHGEKGAVDMYDLLRAA 412
Query: 355 LRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFID 414
LR RP YIIVGE+RG E FQAM TGH +T HA I I R PI VP ++
Sbjct: 413 LRQRPEYIIVGEVRGREALTLFQAMATGHTTYSTLHADSISGAIHRLENPPIGVPRPMLE 472
Query: 415 NLNIALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNS 474
L+I Q YV + +RR + + EI G + T VF+WD V D+H G + +
Sbjct: 473 ALDIISIQAQTYVGDRRVRRNMEIAEIVGLDAHTKMLRTSTVFQWDSVKDEHAMVGTSKA 532
Query: 475 YILENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAF 525
+I G+ + + +EL R R+L+ M+ I + DV I +
Sbjct: 533 L---EEIRRQRGW-SVRELNEELERRRRVLEFMLSNGIRMFKDVSAVIHTY 579
>gb|AAG19279.1| (AE005024) type II secretion system protein; GspE2 [Halobacterium
sp. NRC-1]
Length = 561
Score = 254 bits (641), Expect = 2e-66
Identities = 158/472 (33%), Positives = 250/472 (52%), Gaps = 22/472 (4%)
Query: 61 FIHIYGDPQTETQYI-VIEPRIETREE---EEKYQLIKDRILELAPTREIPEEQEEFERF 116
F+ I D +++T Y V+EP ++ E+ ++ Y I+D ++ A T P+++E
Sbjct: 79 FVFIGFDAESDTHYYHVVEPHLDDFEQTVLDQLYDDIRDALIYDATTD--PDDREAVLI- 135
Query: 117 LDNLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGA 176
A + + + +T + + Y + R G L+P+ +DP++ED+ G
Sbjct: 136 -------AQMQRLLSEYSIDVTPNAFHRLFYYLHRTFEGFEKLDPVMQDPHIEDVSCDGY 188
Query: 177 NY-VSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINI 235
+ V H + + TNI ++ EL ++ L+++ GR +S +P+ + TLPDGSR +
Sbjct: 189 GLPLFVYHTDYTDIETNITYEQQ-ELDSFVVRLAQQSGRHISIGDPVTETTLPDGSRAEL 247
Query: 236 IYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETAS 295
+V+ +G + TIRK++ P + L+ + T S + AYLWLAIE S+ G TAS
Sbjct: 248 ALGEEVTPRGSAFTIRKYSEEPFTPATLVDYDTFSLDQMAYLWLAIESNKSLLFAGGTAS 307
Query: 296 GKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTR-ERGPEESRVTLFDLLKAA 354
GKTT++NA+ F+ P +K+ T EDT E+ + H W VTR G +T++DLL++A
Sbjct: 308 GKTTSMNAVSMFVPPRAKILTIEDTRELALYHDNWLSSVTRGADGGGGDTITMYDLLRSA 367
Query: 355 LRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFID 414
LR RP YIIVGE+RG E FQAM TGH +T HA ++ +I R PINVP I
Sbjct: 368 LRHRPEYIIVGEVRGEEAMTLFQAMNTGHTTYSTMHADSVQTVINRLENDPINVPRAMIQ 427
Query: 415 NLNIALFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNS 474
+L+I Q +V + +RR + EIEG + G + FEWDP D R N
Sbjct: 428 SLDILCVQTLTHVGDERVRRSSVIAEIEGIDQRTGDLDYSTAFEWDPTRDDFEQRDSN-- 485
Query: 475 YILENKIAEIAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFY 526
+ ++I + G+ + EL R R+LQ +VE + +Y I +Y
Sbjct: 486 --VLDEIQDERGW-SRSDLLRELRNRKRVLQYLVEQDVTDYRRFTALINEYY 534
>pir||D72529 hypothetical protein APE2208 - Aeropyrum pernix (strain K1)
>gi|5105908|dbj|BAA81220.1| (AP000063) 476aa long
hypothetical protein [Aeropyrum pernix]
Length = 476
Score = 240 bits (606), Expect = 3e-62
Identities = 150/441 (34%), Positives = 239/441 (54%), Gaps = 23/441 (5%)
Query: 98 LELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIG 157
L+ P + E++ EF + + + ++++ + + + + K Y + R+ +G G
Sbjct: 28 LKTIPGATLAEKEREF--LIRQI--KRIVNIYRIKMASEVEEISWSKILYYMIRNNVGYG 83
Query: 158 PLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPV 216
P++ + +D YLEDI G V V H+ ++ + +NI ++D +L + L+ R G+ +
Sbjct: 84 PIDVLMKDEYLEDISCDGVGRPVYVWHQEYESIKSNIVFEDERQLDHMILLLAHRAGKHI 143
Query: 217 SDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAY 276
S P++D LP+G R+ + +VS +G + TIRKF ATPLSI LI GT+S +IAAY
Sbjct: 144 SVAFPVLDAVLPEGHRVAATFRREVSTQGSTFTIRKFKATPLSIVDLIIGGTISPDIAAY 203
Query: 277 LWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTR 336
LWL EY M + G T SGKTTTLNAI ++P K+ T EDTPE+++PH W +LV+R
Sbjct: 204 LWLMAEYRMPGIIMGVTGSGKTTTLNAIATLLRPNVKIVTIEDTPEIKLPHENWVQLVSR 263
Query: 337 E----RGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAG 392
G ++L+DL++ +LR RP+ IIVGE+RG E + FQA+ TGH + T H+
Sbjct: 264 PSFSVTGESRGEISLYDLVRVSLRYRPDVIIVGEVRGEEAYVLFQALATGHGGLTTIHSE 323
Query: 393 DIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYVKG-------KFLRRVINVVEIEGYY 445
I+ MI+R T P+N+P +I + AL + V + + R+V +V EI G
Sbjct: 324 TIEAMIRRLTSPPMNIPEGYIPLVKFALAVKRVRLPDPASPEGHRIARKVTDVWEITGPS 383
Query: 446 EELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGFEDPKAIYDELFLRARILQ 505
E V W+P + +H + I E I ++ G + + E+ R +L
Sbjct: 384 SE----DAIEVARWNPFTKEHEHFMEKSVAIAE--IGKLVGLTKDE-VLAEIERRKLVLL 436
Query: 506 RMVELKIFNYWDVYREIKAFY 526
M + I Y +V I +Y
Sbjct: 437 WMAKSGIRRYREVAPIIFKYY 457
>pir||G69094 secretory protein kinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622833|gb|AAB86174.1| (AE000927)
secretory protein kinase [Methanobacterium
thermoautotrophicum]
Length = 526
Score = 224 bits (566), Expect = 2e-57
Identities = 152/463 (32%), Positives = 250/463 (53%), Gaps = 27/463 (5%)
Query: 73 QYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGR 132
QY V P+ +E E + I+++++E+A ++ EEF R ++ F V ++
Sbjct: 73 QYKVSLPKFSEKERELLNE-IREKLVEVAVSKG-----EEF-RIDESTFMSEVKEFLR-M 124
Query: 133 KGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPT 191
KG+ ++K I ++++G G L+P+ +D LE+I +IG V V H+ + T
Sbjct: 125 KGVR----NVDKLAKQISQEMLGYGELDPLIKDDDLEEIMVIGVKKPVFVYHRKLGMMIT 180
Query: 192 NIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIR 251
N+ + ++ ++ + ++ ++ R + + PI+D LPDGSR+N P VS G + TIR
Sbjct: 181 NVVFNNDDDIKAIVDLIARQVNRRIDQQTPILDARLPDGSRVNATIPP-VSPDGSTLTIR 239
Query: 252 KFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVC-----GETASGKTTTLNAIIP 306
KF P ++ LI + TMS+ +AA+LW+ + G+ + C G T SGKTTTLN +
Sbjct: 240 KFRKDPFTVVDLINFKTMSSHLAAFLWVCTD-GLGVKPCNAIVAGGTGSGKTTTLNTVSA 298
Query: 307 FIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVG 365
F+ P ++ T EDT E+Q+PH R+ TR E + + + L+K +LR RP+ +IVG
Sbjct: 299 FVPPTERIITIEDTLELQLPHTHVLRMETRPPNIEGKGELDMDTLVKNSLRQRPDRVIVG 358
Query: 366 EIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAV 425
E+RG+E F A+ TGH T HA ++ I R P+NVP I L+ + Q +
Sbjct: 359 EVRGSEAITLFTALNTGHSGFGTLHANTARETITRLINPPMNVPRIMIPALDFIIMQNRM 418
Query: 426 Y-VKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEI 484
Y +G +RR+ V E+ G E G V VFEW+ V+DK + G+ + + E IAE+
Sbjct: 419 YRPEGGSIRRITEVAEVVGMEE--GNVQLNRVFEWNSVADKVEYVGIASQTLRE--IAEL 474
Query: 485 AGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQ 527
I +E+ R +L+ M + I + +V R I +Y+
Sbjct: 475 RAI-SINEIEEEIERRRLVLEYMADENIRSIDEVGRYIHEYYR 516
>pir||B75050 secretory protein kinase PAB1457 - Pyrococcus abyssi (strain Orsay)
>gi|5458808|emb|CAB50295.1| (AJ248287) SECRETORY PROTEIN
KINASE [Pyrococcus abyssi]
Length = 814
Score = 211 bits (531), Expect = 2e-53
Identities = 129/310 (41%), Positives = 188/310 (60%), Gaps = 17/310 (5%)
Query: 83 TREEEEKYQLIKDR-ILELAPTRE-IPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKD 140
+REEE+ +L++DR I+E+ E IP +E + FL V +VK T+++
Sbjct: 150 SREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFL-----REVRKMVK-EMAPTLSEG 203
Query: 141 EMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDNI 199
+E LI +++IG G L+P+ RD LE+I +IG + V V H+ F TNI +K
Sbjct: 204 RVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTER 263
Query: 200 ELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLS 259
EL ++ ++ +GR + +NP++D LPDGSR+N P +SL GP+ TIRKF PL+
Sbjct: 264 ELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTLTIRKFKKDPLT 322
Query: 260 ITQLIAWGTMSAEIAAYLWLAIEYGM-----SIFVCGETASGKTTTLNAIIPFIKPGSKV 314
I LI + T+S+++AA+LWL ++ G+ +I V G T SGKTTTLN++ FI P +V
Sbjct: 323 IIDLIKFRTLSSDVAAFLWLLVD-GLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERV 381
Query: 315 FTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAEGN 373
+ EDT E+Q+P W RL TR E + +T+ DL+K LR RP+ IIVGE+RG E
Sbjct: 382 ISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEAR 441
Query: 374 IAFQAMQTGH 383
F AM TGH
Sbjct: 442 TMFTAMNTGH 451
>pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii
>gi|3257058|dbj|BAA29741.1| (AP000003) 1136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1136
Score = 209 bits (527), Expect = 6e-53
Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 83 TREEEEKYQLIKDR-ILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKDE 141
+++EE+ +L++DR I+E+ E EE R +F V +VK T+++
Sbjct: 148 SKDEEKLLKLVRDRAIVEIQIDPESIPNLEERRR----IFLREVRKMVK-EMAPTLSEGR 202
Query: 142 MEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDNIE 200
+E LI +++IG G L+P+ RD LE+I +IG N V V H+ F TNI + E
Sbjct: 203 VELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGTNRPVYVWHRRFGMCKTNITFTSERE 262
Query: 201 LADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSI 260
+ ++ ++ +GR + +NP++D LPDGSR+N P +SL GP+ TIRKF PL+I
Sbjct: 263 ILTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTITIRKFKKDPLTI 321
Query: 261 TQLIAWGTMSAEIAAYLWLAIEYGM-----SIFVCGETASGKTTTLNAIIPFIKPGSKVF 315
LI + T+++E+AA+LWL ++ G+ +I V G T SGKTTTLN++ FI P +V
Sbjct: 322 IDLIKFRTLNSEVAAFLWLLVD-GLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVI 380
Query: 316 TAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNI 374
+ EDT E+Q+P W RL TR E + +T+ DL+K LR RP+ IIVGE+RG E
Sbjct: 381 SIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEART 440
Query: 375 AFQAMQTGH 383
F AM TGH
Sbjct: 441 MFTAMNTGH 449
>sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287 >gi|2128765|pir||F64460 hypothetical
protein MJ1287 - Methanococcus jannaschii
>gi|1591924|gb|AAB99289.1| (U67569) type II secretion
system protein, putative [Methanococcus jannaschii]
Length = 270
Score = 203 bits (510), Expect = 6e-51
Identities = 110/252 (43%), Positives = 152/252 (59%), Gaps = 5/252 (1%)
Query: 261 TQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDT 320
T LI +G++S E+ AYLWL IEY SI V GE A+GKTT LNA FI P K+ + EDT
Sbjct: 3 TDLIRYGSISPEMLAYLWLLIEYKNSIMVAGEVATGKTTLLNAFSLFIPPQMKIVSIEDT 62
Query: 321 PEVQVPHPTWQRLVTRER-GPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAM 379
PE+++ H W TR G EE +T+ DLLKAALR RP+Y+IVGE+RG E I FQA+
Sbjct: 63 PEIRLYHENWIAGTTRSGFGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILFQAI 122
Query: 380 QTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYVKGKFLRRVINVV 439
TGH ++T HA + +I+R P+N+P ++ LN Q + KG+F+RR ++
Sbjct: 123 TTGHLALSTIHAKSPEAVIRRLNAEPMNIPKIMLEQLNAICMQVRLIYKGRFVRRTKSIT 182
Query: 440 EIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGFEDPKAIYDELFL 499
EI Y ++ + +VF W+P D F G SY+L +IAE G + K I +EL
Sbjct: 183 EIVEYDPKIDDIILHDVFRWNPEDDTFEFSG--ESYLL-RRIAEFIGISE-KEIINELHS 238
Query: 500 RARILQRMVELK 511
RA L+ + + K
Sbjct: 239 RAEFLRNLCKTK 250
>gb|AAK42798.1| Type II secretion system protein, virB homolog (gspE-2) [Sulfolobus
solfataricus]
Length = 515
Score = 193 bits (486), Expect = 4e-48
Identities = 141/466 (30%), Positives = 244/466 (52%), Gaps = 28/466 (6%)
Query: 74 YIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRK 133
Y+V EP+++ RE + ++ D ++ A T + +Q + E+ +E VL +
Sbjct: 64 YLVNEPQLDQRENKILLAIL-DGLIYSASTA-VSNKQIDLEKL-----QEDVLKISAKLG 116
Query: 134 GLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLP-- 190
+ K ++K+ Y I R+I L+ DP++E+I ++ +SVVH P
Sbjct: 117 VIGDVKRNLKKYMYYITREI-KYSILQAPMSDPFVEEIELVSPTTPISVVHSRHSEWPRL 175
Query: 191 -TNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSAT 249
TNI +++ ++ L+ GR VS P+ D LP+G R+ + Y ++S +G +
Sbjct: 176 ETNIVLGSELKVRRLVERLASLGGRSVSTATPLQDFMLPEGHRVAVSYGEEIS-RGTTFN 234
Query: 250 IRKFAATPLSITQLI-AWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
IRKF PL+I LI +GT+S +A YLW+ E + F+ G T SGKTT LNA++ +
Sbjct: 235 IRKFPEKPLTIIDLIYKYGTLSDLMAVYLWIIAEAKLFTFLVGPTGSGKTTALNALLMLL 294
Query: 309 KPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESR-VTLFDLLKAALRSRPNYIIVGEI 367
P +K T EDTPE+++PH W + TR E S+ ++ ++L++ +LR RP+YIIVGE+
Sbjct: 295 NPLAKYLTIEDTPELKLPHKYWIQFYTRPSNYEGSKDISYYELVRLSLRYRPDYIIVGEV 354
Query: 368 RGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTG--SPINVPITFIDNLN-IALFQQA 424
RG E QA+ +GH + TFH + +I R +G P + + F ++ IA+ ++
Sbjct: 355 RGKEIEWLVQAVASGHGGLTTFHGSNHTDLITRISGLLGP-ELSLQFKQLISVIAIIKRI 413
Query: 425 VYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNN-SYILENKIAE 483
K R++I++VE +G R VF +D + + + I + E
Sbjct: 414 ETEDRKMNRKMISIVENDGN-------GFREVFRYDYERKNFVPDNLKEITSIQLERSRE 466
Query: 484 IAGFEDPKAIYDELFLRARILQRMVELKIFNYWDVYREIKAFYQRG 529
+ G+ K +Y E+ R +++ + E +++Y + RE+ +Y G
Sbjct: 467 LLGWSRDK-LYREIENRLLLIRGLAEKGVYDYDTLARELVKYYTNG 511
>gb|AAK40475.1| Type II secretion system protein, virB homolog (gspE-1) [Sulfolobus
solfataricus]
Length = 483
Score = 183 bits (459), Expect = 5e-45
Identities = 142/450 (31%), Positives = 224/450 (49%), Gaps = 32/450 (7%)
Query: 74 YIVIEPRIETREEEEKYQLIKDRILE-LAPTREIPEEQEEFERFLDNLFEEAVLSLVKGR 132
Y V EP ++ E E I + ILE + T +P EE V+ ++K
Sbjct: 35 YKVNEPNLDQNEIE-----ILNSILEYIYSTPSVPN------------IEETVVKILKN- 76
Query: 133 KGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKI---FQH 188
KG++ + +EK Y +++ I G L DPY+E+I G +Y V+VVH+I F
Sbjct: 77 KGIS-DQGIIEKIIYYLRKRI-GYDELTVPLADPYVEEIECKGFSYPVTVVHRIVTRFPR 134
Query: 189 LPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSA 248
L TNI + + ++ L+ + +PVS P ++ +LP+G R+ S +VSL G +
Sbjct: 135 LYTNIILEQEDHVLKVIEKLANKADKPVSIAKPYLEFSLPEGHRVAATVSREVSLPGSTF 194
Query: 249 TIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
IRKF P+S LI ++S+ + AY+W ++Y + G T SGKTT LN+I+ I
Sbjct: 195 DIRKFPLKPISPISLIKNESISSLMLAYIWFLLDYKPFFLIIGSTGSGKTTLLNSILSMI 254
Query: 309 KPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIR 368
P KV T EDTPE+ + H W R R+ + V+L DL K +LR RP+Y+++GEIR
Sbjct: 255 NPFFKVITIEDTPEINIIHDNWIRFFARQSISSQFEVSLMDLAKLSLRYRPDYLVIGEIR 314
Query: 369 GAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPIT--FIDNLNIALFQQAVY 426
G E A +GH +ATFHAG+ + + R S +N + F+ NL + +
Sbjct: 315 GKEIEALVHASASGHGSLATFHAGNPHEALTRLL-SLLNKDVAKLFLQNLWGIIVLGTLR 373
Query: 427 VKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIA- 485
+ +RR+I + Y G + R V W S+ + +++ +I+ I+
Sbjct: 374 DRNGNIRRIIRSIYEIVYTR--GKLRFRPVLRWSFSSNTFMPNNIDDLIKRSYRISYISK 431
Query: 486 GFEDP-KAIYDELFLRARILQRMVELKIFN 514
+E P I E+ R + L V I +
Sbjct: 432 TYEIPISEITKEISNRVKTLNNFVSNNILD 461
>pir||S75369 hypothetical protein c04002 - Sulfolobus solfataricus
>gi|1707774|emb|CAA69572.1| (Y08257) virB homolog
[Sulfolobus solfataricus]
Length = 483
Score = 183 bits (459), Expect = 5e-45
Identities = 142/450 (31%), Positives = 224/450 (49%), Gaps = 32/450 (7%)
Query: 74 YIVIEPRIETREEEEKYQLIKDRILE-LAPTREIPEEQEEFERFLDNLFEEAVLSLVKGR 132
Y V EP ++ E E I + ILE + T +P EE V+ ++K
Sbjct: 35 YKVNEPNLDQNEIE-----ILNSILEYIYSTPSVPN------------IEETVVKILKN- 76
Query: 133 KGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKI---FQH 188
KG++ + +EK Y +++ I G L DPY+E+I G +Y V+VVH+I F
Sbjct: 77 KGIS-DQGIIEKIIYYLRKRI-GYDELTVPLADPYVEEIECKGFSYPVTVVHRIVTRFPR 134
Query: 189 LPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSA 248
L TNI + + ++ L+ + +PVS P ++ +LP+G R+ S +VSL G +
Sbjct: 135 LYTNIILEQEDHVLKVIEKLANKADKPVSIAKPYLEFSLPEGHRVAATVSREVSLPGSTF 194
Query: 249 TIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
IRKF P+S LI ++S+ + AY+W ++Y + G T SGKTT LN+I+ I
Sbjct: 195 DIRKFPLKPISPISLIKNESISSLMLAYIWFLLDYKPFFLIIGSTGSGKTTLLNSILSMI 254
Query: 309 KPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIR 368
P KV T EDTPE+ + H W R R+ + V+L DL K +LR RP+Y+++GEIR
Sbjct: 255 NPFFKVITIEDTPEINIIHDNWIRFFARQSISSQFEVSLMDLAKLSLRYRPDYLVIGEIR 314
Query: 369 GAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPIT--FIDNLNIALFQQAVY 426
G E A +GH +ATFHAG+ + + R S +N + F+ NL + +
Sbjct: 315 GKEIEALVHASASGHGSLATFHAGNPHEALTRLL-SLLNKDVAKLFLQNLWGIIVLGTLR 373
Query: 427 VKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIA- 485
+ +RR+I + Y G + R V W S+ + +++ +I+ I+
Sbjct: 374 DRNGNIRRIIRSIYEIVYTR--GKLRFRPVLRWSFSSNTFMPNNIDDLIKRSYRISYISK 431
Query: 486 GFEDP-KAIYDELFLRARILQRMVELKIFN 514
+E P I E+ R + L V I +
Sbjct: 432 TYEIPISEITKEISNRVKTLNNFVSNNILD 461
>gb|AAD38172.2|AF152598_1 (AF152598) TadA [Actinobacillus actinomycetemcomitans]
Length = 426
Score = 177 bits (444), Expect = 3e-43
Identities = 122/377 (32%), Positives = 197/377 (51%), Gaps = 16/377 (4%)
Query: 92 LIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKR 151
L++ +L +I E Q E ++ L + +++ V + G +T + ++
Sbjct: 9 LLRSEVLSNLDIEKIDELQSERSSLVNELVQ--IVNRVANKSGAYLTSADTLVMAEIVAD 66
Query: 152 DIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSER 211
+I G GPL + D + DI + G N + V T+ ++ N +L D K L R
Sbjct: 67 EIEGYGPLRDLMADDTINDILVNGPNDIWVERAGILE-KTDKEFVSNEQLTDIAKRLVAR 125
Query: 212 IGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSA 271
+GR + D +P+VD LPDGSR+N++ +P ++L G S +IRKF+ ++ +L+ +G+M+
Sbjct: 126 VGRRIDDGSPLVDSRLPDGSRLNVVIAP-IALDGTSISIRKFSKNKKTLQELVNFGSMTR 184
Query: 272 EIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQ 331
E+A +L +A ++I V G T SGKTT LNA+ +I +V T EDT E+++ P
Sbjct: 185 EMANFLIIAARSRVNIIVSGGTGSGKTTLLNALSNYISHTERVITLEDTAELRLEQPHVV 244
Query: 332 RLVTRERGPEES-RVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATF 389
RL TR G E + VT+ DL+ ALR RP IIVGE RG E QAM TGH M+T
Sbjct: 245 RLETRLAGVEHTGEVTMQDLVINALRMRPERIIVGECRGGEAFQMLQAMNTGHDGSMSTL 304
Query: 390 HAGDIKKMIQRFTG----SPINVPITFIDNLNIALFQQAVYVKGKF---LRRVINVVEIE 442
HA + R S ++P+ I NI+ + + R+++N+ E+
Sbjct: 305 HANSPRDATSRLESMVMMSNASLPLEAI-RRNISSAVNIIVQASRLNDGSRKIMNITEVM 363
Query: 443 GYYEELGGVATRNVFEW 459
G E G + +++F +
Sbjct: 364 GM--ENGQIVLQDMFSY 378
>gb|AAG33866.1|AF317389_1 (AF317389) putative type IV NTPase [Haemophilus aphrophilus]
Length = 426
Score = 176 bits (441), Expect = 7e-43
Identities = 122/382 (31%), Positives = 197/382 (50%), Gaps = 16/382 (4%)
Query: 87 EEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKDEMEKFR 146
+E+ ++ +L +I Q E ++ L + +++ V + G +T +
Sbjct: 4 KEQQIFLRSEVLSNLDIEKIDALQSERNLLVNELVQ--IVNRVASKSGTYLTSADTLVMA 61
Query: 147 YLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLK 206
++ +I G GPL + D + DI + G + V + T+ ++ N +L D K
Sbjct: 62 EIVADEIEGYGPLRDLMADDTINDILVNGPDDVWIERAGILE-KTSKEFVSNEQLTDIAK 120
Query: 207 NLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAW 266
L R+GR + D +P+VD LPDGSR+N++ +P ++L G S +IRKF+ ++ +L+ +
Sbjct: 121 RLVARVGRRIDDGSPLVDSRLPDGSRLNVVIAP-IALDGTSVSIRKFSKNKKTLQELVNF 179
Query: 267 GTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVP 326
G+M+ E+A +L +A ++I V G T SGKTT LNA+ +I +V T EDT E+++
Sbjct: 180 GSMTREMANFLIIAARSRVNIIVSGGTGSGKTTLLNALSNYISHSERVITLEDTAELRLE 239
Query: 327 HPTWQRLVTRERGPEES-RVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP- 384
P RL TR G E + VT+ DL+ ALR RP IIVGE RG E QAM TGH
Sbjct: 240 QPHVVRLETRLAGVEHTGEVTMKDLVINALRMRPERIIVGECRGGEAFQMLQAMNTGHDG 299
Query: 385 VMATFHAGDIKKMIQRFTG----SPINVPITFIDNLNIALFQQAVYVKGKF---LRRVIN 437
M+T HA + R S +P+ I NIA + + R+++N
Sbjct: 300 SMSTLHANSPRDATSRLESMVMMSNATLPLEAI-RRNIASAVNIIVQASRLNDGSRKIVN 358
Query: 438 VVEIEGYYEELGGVATRNVFEW 459
+ EI G E G + +++F +
Sbjct: 359 ITEIMGM--ENGQIVLQDIFSY 378
>pir||G72658 probable Vir B11 APE0695 - Aeropyrum pernix (strain K1)
>gi|5104356|dbj|BAA79671.1| (AP000060) 474aa long
hypothetical Vir B11 [Aeropyrum pernix]
Length = 474
Score = 175 bits (439), Expect = 1e-42
Identities = 117/324 (36%), Positives = 171/324 (52%), Gaps = 12/324 (3%)
Query: 146 RYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDNIELADY 204
RY ++ + G G L P+ D ++E+I G VSV+H + ++ K + A+
Sbjct: 90 RYHAEKRMSGYGRLYPLIIDGHIEEIAFEGPGRGVSVIHSLVPGRWIDVDLKLGEDEANS 149
Query: 205 LK-NLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQL 263
L L+ + GR +S P+ +G +G R+ + +S +VS G S IRK+ P+++ L
Sbjct: 150 LALQLARKAGRSLSLAQPLAEGLTGEGHRVAVTFSREVSRFGSSFVIRKYPEKPVTMADL 209
Query: 264 IAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEV 323
+A ++ AAYLWL +E I V G SGKTT L A+ I P +V T EDTPE+
Sbjct: 210 VASRVLTPLQAAYLWLLVESQQFIVVSGPMGSGKTTLLQALAGLIPPFYRVITIEDTPEI 269
Query: 324 QVPHPTWQRLVTRERGPEES--RVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQT 381
++ + W LVTR P ES V L LL+ ALR R YIIVGE+RG E + QA +
Sbjct: 270 RLYNRHWDSLVTRPPLPGESMVEVDLEALLRFALRRRAEYIIVGEVRGREARLLAQAAAS 329
Query: 382 GHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLN-IALFQQAVYVKGKFLRRVINVVE 440
GH M T H + +I R PI++P F+ + I + ++ G RRV+++ E
Sbjct: 330 GHGSMTTMHGDTPEGVILRLQLEPISLPPVFLSLIGAIVMLRRLPGYGGAVRRRVVSITE 389
Query: 441 IEGYYEELGGVATRNVFEWDPVSD 464
IE GG A +VF WDP D
Sbjct: 390 IE------GGEAV-DVFAWDPKGD 406
>gb|AAF40195.1|AF229646_7 (AF229646) CpaF [Caulobacter crescentus]
Length = 501
Score = 173 bits (435), Expect = 3e-42
Identities = 117/340 (34%), Positives = 184/340 (53%), Gaps = 20/340 (5%)
Query: 133 KGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGAN--YVSVVHKIFQHLP 190
K ++++ E E I D++G GPLEP+ + DI + GA+ ++ V K+
Sbjct: 125 KNVSMSVAEQEHLVQDIINDVLGYGPLEPLLARDDIADIMVNGAHRVFIEVGGKVQL--- 181
Query: 191 TNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATI 250
TN++++DN++L + + + ++GR V + +PI D LPDGSR+N+I +P ++L GP+ TI
Sbjct: 182 TNVRFRDNLQLMNICQRIVSQVGRRVDESSPICDARLPDGSRVNVI-APPLALDGPTLTI 240
Query: 251 RKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKP 310
RKF L++ L+ + ++S E A L + ++ + G T SGKTT LN + FI P
Sbjct: 241 RKFKKDKLTMKNLVEFASISPEGARVLGVIGACRCNLVISGGTGSGKTTLLNTMTAFIDP 300
Query: 311 GSKVFTAEDTPEVQVPHPTWQRLVTRERGPEES-RVTLFDLLKAALRSRPNYIIVGEIRG 369
+V T ED E+Q+ P RL TR E S VT+ DL+K LR RP IIVGE+RG
Sbjct: 301 TERVVTCEDAAELQLQQPHVVRLETRPPNLEGSGAVTMRDLVKNCLRMRPERIIVGEVRG 360
Query: 370 AEGNIAFQAMQTGHP-VMATFHAGDIKKMIQR----FTGSPINVPITFIDNLNI----AL 420
E QAM TGH M T HA ++ I R T +P I + + +
Sbjct: 361 PEAFDLLQAMNTGHDGSMGTLHANSPREAISRIESMITMGGYGLPSKTIKEMIVGSVDVI 420
Query: 421 FQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWD 460
Q A G RR+ ++ E+ G ++ + T+++F ++
Sbjct: 421 IQAARLRDGS--RRITHITEVVGLEGDV--IVTQDLFVYE 456
>sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi|2129090|pir||E64397 klbA homolog -
Methanococcus jannaschii >gi|1591480|gb|AAB98770.1|
(U67522) type II secretion system protein [Methanococcus
jannaschii]
Length = 721
Score = 167 bits (418), Expect = 3e-40
Identities = 101/252 (40%), Positives = 147/252 (58%), Gaps = 13/252 (5%)
Query: 140 DEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDN 198
D + KF YL+ I +G LE D LE++ + G N V V H+ Q TNI N
Sbjct: 156 DSLAKFFYLV---IGRLGLLEVPLNDDRLEEVMVNGYNVPVFVFHRKHQMCETNIVLDRN 212
Query: 199 IELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPL 258
E+ +++++ + RP+ R P++D LPDGSR+N + D+++ G + TIRKF+ PL
Sbjct: 213 -EVDRIIESIANLVNRPIDSRVPMLDAFLPDGSRVNAT-TADITMNGATLTIRKFSKNPL 270
Query: 259 SITQLIAWGTMSAEIAAYLWLAIE--YGM---SIFVCGETASGKTTTLNAIIPFIKPGSK 313
++ LI +GT+ + AA+LW A+E +G + + G T SGKTT LN + F +
Sbjct: 271 TVIDLINFGTLDIDTAAFLWQAVEGYFGAKPANTLIAGGTGSGKTTLLNVLSLFSMYNER 330
Query: 314 VFTAEDTPEVQVPHPTWQRLVTRERGP--EESRVTLFDLLKAALRSRPNYIIVGEIRGAE 371
+ T EDTPE+Q+PH ++VTR P E VT+ DL+K ALR RP+ I VGE+RG E
Sbjct: 331 IITIEDTPELQIPHKHVIKMVTRPARPGMPEYEVTMDDLIKNALRMRPDRIFVGEVRGKE 390
Query: 372 GNIAFQAMQTGH 383
+ AM TGH
Sbjct: 391 AHSLLVAMNTGH 402
>emb|CAC12033.1| (AL445065) export type III nucleotide binding protein (Vir B11)
related protein [Thermoplasma acidophilum]
Length = 399
Score = 164 bits (411), Expect = 2e-39
Identities = 121/368 (32%), Positives = 199/368 (53%), Gaps = 31/368 (8%)
Query: 137 ITKDEMEKFRYLIKRDIIG-IGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKW 195
ITK+++EKF D + +G ++P+ DP +EDI ++ NYV + H+ + TNI +
Sbjct: 29 ITKNQIEKFA----DDYVNRMGKIQPLIDDPDIEDITVLPENYVYIYHRSMGSMRTNIFF 84
Query: 196 KDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGS-RINIIYSPDVSLKGPSATIRKFA 254
+ E + ++L++R G+ +S NPIVD + G+ RINI++ DVS P+ +IRK
Sbjct: 85 TE-YEAGRFARHLAQRSGKTLSVYNPIVD--ISQGNLRINIVHH-DVSR--PTISIRKLR 138
Query: 255 ATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKV 314
+ P + LI GT SA++ AYLW AI+ ++I + G TASGKTT LNAI FI P V
Sbjct: 139 SNPFNPVNLIGNGTASADVMAYLWEAIQARLNILITGSTASGKTTLLNAIAMFIDPLLNV 198
Query: 315 FTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNI 374
EDT E+ +P + + + P S +++ DLL P+Y+I GEIRG + +
Sbjct: 199 VLVEDTHELSLP---GKNIFYMQPRPGVSGLSIRDLLDVITYRNPDYLIAGEIRGPDIDA 255
Query: 375 AFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYVKGKFLRR 434
F + +G M T H+G +++R P ++P + + N++I V ++ R
Sbjct: 256 FFNYLASGRKGMTTVHSGGPASLMRRLRSPPNSIPDSSLMNVDI-----IVEMRNDMKRY 310
Query: 435 VINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGMNNSYILENKIAEIAGFEDPKAIY 494
+ V E+ G+ NV+E++ + + SYI++ KIA+I G P+A
Sbjct: 311 IGKVSEV----RMDDGLLLNNVYEYNDGA----YEMSGISYIVK-KIADIRGI--PEAYI 359
Query: 495 DELFLRAR 502
++ + R
Sbjct: 360 EDRIRKKR 367
>gi|10956073 secretory protein kinase [Chlorobium limicola]
>gi|1688242|gb|AAB36933.1| (U77780) secretory protein
kinase [Chlorobium limicola]
Length = 474
Score = 159 bits (399), Expect = 6e-38
Identities = 109/350 (31%), Positives = 179/350 (51%), Gaps = 14/350 (4%)
Query: 118 DNLFEEAVLSLVK--GRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIG 175
D L E + LV + L + E + +K +I+G+GPLEP+ DP + +I + G
Sbjct: 81 DRLRNELGVQLVALIEEEALPLNVQERNRLVADLKNEIMGLGPLEPLIADPGVSEIMVNG 140
Query: 176 ANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINI 235
+ V K PT+I++ D+ L + + R+GR + + +P+VD LPDGSR+N
Sbjct: 141 HQNI-YVEKNGCIYPTDIRFNDDAHLMKIIDKIVSRVGRRIDECSPMVDARLPDGSRVNA 199
Query: 236 IYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETAS 295
+ P ++L+GP TIR+FA PL + I T++ ++A L ++ +I + G T S
Sbjct: 200 VIPP-LALEGPVLTIRRFAVVPLQMRDFIQKNTVTPQMAELLSALVKVKCNIIISGGTGS 258
Query: 296 GKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAA 354
GKTT LN + FI ++ T EDT E+Q+ R+ TR E + +T+ L+K
Sbjct: 259 GKTTLLNILSGFIPSSERIVTLEDTAELQLQQDHVVRMETRLPNIEGKGEITMRALVKNX 318
Query: 355 LRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAGDIKKMIQRFTG----SPINVP 409
LR RP+ I++GE+R +E QAM TGH + T HA + + R S + +P
Sbjct: 319 LRMRPDRIVIGEVRTSEVIEMLQAMNTGHDGSLTTIHANSSRDALGRLENLVGMSGVVLP 378
Query: 410 ITFIDNLNIALFQQAVYVK--GKFLRRVINVVEIEGYYEELGGVATRNVF 457
+ L + V V R++ ++ EI G ++ + T+ +F
Sbjct: 379 SKALHQLIASSIHFIVQVSRLDDGSRKITSIQEISGMEGDV--ITTQEIF 426
>pir||E83108 probable type II secretion system protein PA4302 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950524|gb|AAG07690.1|AE004846_7 (AE004846) probable
type II secretion system protein [Pseudomonas
aeruginosa]
Length = 421
Score = 152 bits (380), Expect = 1e-35
Identities = 97/273 (35%), Positives = 151/273 (54%), Gaps = 8/273 (2%)
Query: 132 RKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVH--KIFQHL 189
R L I++ E+++ + ++ G GPLE + RDP + +I + G V V +++Q
Sbjct: 66 RHQLAISRYELDRLAEEVVDELTGFGPLEILLRDPGVSEILVNGPGRVFVEREGRLYQ-- 123
Query: 190 PTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSAT 249
+++++ D+ + ++ + +GR + + +P+VD LPDGSR+N I P V+L GP +
Sbjct: 124 -SDLRFIDDHHVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPP-VALDGPCIS 181
Query: 250 IRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
IRKF+ L L+A+ ++ + +L A+ +I + G T +GKTT LN I FI
Sbjct: 182 IRKFSQELLRSADLLAYQSVDEALLEFLRQAVSRRCNILISGGTGTGKTTLLNVISGFID 241
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIR 368
++ T EDT E+Q+ H RL TR E VT DL++ ALR RP+ II+GEIR
Sbjct: 242 ERERIVTIEDTAELQLGHDHVVRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIR 301
Query: 369 GAEGNIAFQAMQTGHP-VMATFHAGDIKKMIQR 400
G E QAM TGH M+T HA + R
Sbjct: 302 GVEVLDVLQAMNTGHDGSMSTVHANSAMDSLLR 334
>emb|CAB92602.1| (AL356813) putative secretory protein [Streptomyces coelicolor
A3(2)]
Length = 445
Score = 144 bits (360), Expect = 2e-33
Identities = 114/384 (29%), Positives = 192/384 (49%), Gaps = 20/384 (5%)
Query: 123 EAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVV 182
E VL + R+G ++ E + + + +G+G LEP+ D + +I + G + + V
Sbjct: 52 ERVLGHIISREGPVLSTVERSQLIRRVVDEALGLGILEPLLEDASITEIMVNGPDAIFVE 111
Query: 183 HK-IFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDV 241
+ LP +++ + +L ++ + + R V + NP+VD LP G R+N+I P +
Sbjct: 112 RAGRVEQLP--LRFASHDQLMQTIERIVSTVNRRVDESNPMVDARLPSGERVNVIIPP-L 168
Query: 242 SLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTL 301
SL G + TIR+F + ++ +LI G++ + L ++ +I V G T +GKTT L
Sbjct: 169 SLTGATLTIRRFPRS-FTLQELIGLGSLDENMLYLLAGLVQARFNIIVSGATGTGKTTLL 227
Query: 302 NAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPN 360
NA+ I ++ T ED+ E+Q+ RL +R E + R+T+ DL++ +LR RP+
Sbjct: 228 NALSGLIPESDRIITIEDSAELQLQQAHVIRLESRPPNVEGQGRITIRDLVRNSLRMRPD 287
Query: 361 YIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAGDIKKMIQRF--TGSPINVPITFI---D 414
I+VGE+RG E QAM TGH +AT HA + + R S +V I F+ D
Sbjct: 288 RIVVGEVRGGESLDMLQAMSTGHDGSLATVHANSAEDALMRLQTLASMSDVEIPFVALHD 347
Query: 415 NLNIA---LFQQAVYVKGKFLRRVINVVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGM 471
+N + L Q + G RR+ + + + E +AT F P+S G
Sbjct: 348 QINSSVDVLIQLTRFADG--ARRITEIALLASHGGEPYRLATVARFNARPMSADGRVVGA 405
Query: 472 NNSYILENKIAE---IAGFEDPKA 492
+ L ++ AE +AG P+A
Sbjct: 406 YEYHPLPHRTAERLYMAGQPIPQA 429
>pir||T36677 probable secretory protein - Streptomyces coelicolor
>gi|4539574|emb|CAB38493.1| (AL035636) putative
secretory protein [Streptomyces coelicolor A3(2)]
Length = 523
Score = 118 bits (292), Expect = 2e-25
Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 3/236 (1%)
Query: 149 IKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLKNL 208
++ +++G GPLEP+ DP + D+ + + V V L + + D + + L
Sbjct: 177 LRSELVGSGPLEPLLADPSVTDVLVSAPDRVWVDRGGGLELAP-VSFPDAAAVRRLAQRL 235
Query: 209 SERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGT 268
+ GR + D P VD LPDG+R++ + P V++ +R ++ +L A GT
Sbjct: 236 ATVAGRRLDDARPWVDARLPDGTRLHAVLPP-VAVDCTCLALRVVRPRAFTLRELAAAGT 294
Query: 269 MSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHP 328
+ L + +S V G T SGKTT L+A++ + P ++ AED+ E++ HP
Sbjct: 295 VPPGGDRVLRALLRARLSFLVSGGTGSGKTTLLSALLGLVGPDERIVLAEDSAELRPDHP 354
Query: 329 TWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGH 383
RL TR E VTL DL++ ALR RP+ ++VGE+RG E A+ TGH
Sbjct: 355 HVVRLETRPANQEGAGLVTLEDLVRQALRMRPDRLVVGEVRGPEVVHLLAALNTGH 410
>gb|AAG18825.1| (AE004986) type II secretion system protein; GspE1 [Halobacterium
sp. NRC-1]
Length = 548
Score = 108 bits (266), Expect = 2e-22
Identities = 81/257 (31%), Positives = 121/257 (46%), Gaps = 14/257 (5%)
Query: 140 DEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHI--IGANYVSV----VHKIFQHLPTNI 193
D + Y + RD++G L RDP LED+ +G V VH +PTN+
Sbjct: 292 DHVADLAYYVVRDLVGDAELTIPIRDPNLEDVEANRVGERVKVVARDRVHAADDRIPTNL 351
Query: 194 KWKDNIELADYLKNLSERIGRPVSDRNPIVDGTL-PDGSRINI-----IYSPDVSLKGPS 247
D D + L+ + G ++ P L PDG ++ + P +S GP
Sbjct: 352 VLDDEQRFVDLVTGLAAQDGVELNAATPAAKVNLEPDGVADDVTIRCAVALPAISEGGPH 411
Query: 248 ATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPF 307
+IRK AA L+ L+ G+++A I A LWLA E+ + G T GKTT +NA +PF
Sbjct: 412 VSIRKQAADALTPVDLLRQGSLTAGIVALLWLAYEHHRVVLFSGPTGVGKTTLMNAHMPF 471
Query: 308 IKPGSK-VFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGE 366
+ + V E + EV++PH T L TRE RV++ DL+ A P+ ++ E
Sbjct: 472 VPFDDRPVSIDEGSREVRLPHETGVSLSTREHEQAFKRVSMADLMTATNYLNPDIEVIAE 531
Query: 367 IRGAEGNIAF-QAMQTG 382
I +F Q + TG
Sbjct: 532 INTRASFESFAQILNTG 548
>emb|CAB77317.1| (AL160312) putative protein kinase [Streptomyces coelicolor A3(2)]
Length = 435
Score = 107 bits (264), Expect = 4e-22
Identities = 97/377 (25%), Positives = 173/377 (45%), Gaps = 30/377 (7%)
Query: 108 EEQEEFER-FLDNLFEEAVLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDP 166
E++ + R + + EE + + G + + + E + + + G+G L+P+ DP
Sbjct: 38 EDERHYARAVIAQILEEYARAEINGGR-TPLDAETEEAYAAAVHAALFGVGRLQPLLDDP 96
Query: 167 YLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLKNLSERIG---RPVSDRNPIV 223
+E+I I G ++V V + + + + EL + ++ L G RP NP +
Sbjct: 97 EVENIDINGCDHVFVGYSDGRETRGEAVAETDEELIELIQILGAYSGLSSRPFDSANPQL 156
Query: 224 DGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAYLWLAIEY 283
D LPDGSR++ + DV+ + P+ +IR+ + I+ L+ GT++ E+ +L A+
Sbjct: 157 DLRLPDGSRLSAVM--DVARR-PALSIRRARMGKVFISDLVGNGTLTPELGHFLACAVRA 213
Query: 284 GMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVP-----HPTWQRLVTRER 338
+I + G T +GKTT L A+ I P ++ T E E+ + HP R
Sbjct: 214 RKNIMIAGATNAGKTTLLRALANEIPPHERLITVERALELGLDTFPELHPNVVAFEERLP 273
Query: 339 GPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAGDIKK 396
E + +T+ +L++ +LR P+ +IVGE+ G E AM G+ ++T HA +
Sbjct: 274 NSEGQGAITMAELVRRSLRMNPSRVIVGEVLGDEIVTMLNAMSQGNDGSLSTIHANSSHE 333
Query: 397 MIQRFTGSPI----NVPITFIDNLNIALFQQAVYVK--------GKFLRRVINVVEIEGY 444
+ R + + +PI L V+V+ G+ R V +V E+ G
Sbjct: 334 VFNRISTYALQATERLPIEASQMLVAGAVNFVVFVQRRNDFQSGGRLQRMVTSVREVNGV 393
Query: 445 YEELGGVATRNVFEWDP 461
G V + VF P
Sbjct: 394 D---GRVLSSEVFAETP 407
>dbj|BAA97435.1| (AB045234) component of type IV secretion system [Wolbachia sp.
wTai]
Length = 330
Score = 101 bits (249), Expect = 2e-20
Identities = 91/303 (30%), Positives = 142/303 (46%), Gaps = 56/303 (18%)
Query: 163 ARDPYLEDIHII----GANYVSVVHKIFQHLPTNIKWKDN--------IELAD--YLKNL 208
A D YLE + I G N +S+ + P + W +N +E+ D +LK+L
Sbjct: 5 ALDTYLEPLQGIFQEEGVNEISI------NKPKEV-WIENRGEIRCEKLEIFDLNHLKSL 57
Query: 209 SERIGRP----VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLI 264
S I + +S+ P++ TLP+G RI I++ P +IRK ++ L++
Sbjct: 58 SRLIAQATEQKLSEETPLLSATLPNGYRIQIVFPPACEPDKVVISIRKPSSMQLALDDYE 117
Query: 265 AWGTMSA---------------------EIAAYLWLAIEYGMSIFVCGETASGKTTTLNA 303
G S +I +L A+ +I + G T++GKTT NA
Sbjct: 118 KMGAFSETVIGVTDNPVDRHLDLLLKQKKIKEFLEYAVINKKNIIISGGTSTGKTTFTNA 177
Query: 304 IIPFIKPGSKVFTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYI 362
+ I ++ T ED E+ + HP L+ + G ++VT DL++A LR RP+ I
Sbjct: 178 TLRAIPSEERIITVEDAREIVLNDHPNKVHLIASKGGQGRAKVTTQDLIEACLRLRPDRI 237
Query: 363 IVGEIRGAEGNIAFQAMQTGHP-VMATFHAG-------DIKKMI-QRFTGSPINVPITFI 413
IVGE+RGAE +A+ TGHP ++T HA IK M+ Q G P + I +I
Sbjct: 238 IVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMALEQIKLMVMQANLGIPPDQIIPYI 297
Query: 414 DNL 416
N+
Sbjct: 298 RNV 300
>dbj|BAA97442.1| (AB045235) component of type IV secretion system [Wolbachia sp.
wKueYO]
Length = 330
Score = 98.7 bits (242), Expect = 1e-19
Identities = 90/303 (29%), Positives = 141/303 (45%), Gaps = 56/303 (18%)
Query: 163 ARDPYLEDIHII----GANYVSVVHKIFQHLPTNIKWKDN--------IELAD--YLKNL 208
A D YLE + I G N +S+ + P + W +N +E+ D +LK+L
Sbjct: 5 ALDTYLEPLQGIFQEEGVNEISI------NKPKEV-WIENRGEIRCEKLEVFDLNHLKSL 57
Query: 209 SERIGRP----VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLI 264
I + +S+ P++ TLP+G RI I++ P +IRK ++ L++
Sbjct: 58 GRLIAQATEQKLSEEAPLLSATLPNGYRIQIVFPPACEPDKVVMSIRKPSSMQLALDDYE 117
Query: 265 AWGTMSA---------------------EIAAYLWLAIEYGMSIFVCGETASGKTTTLNA 303
G S +I +L A+ +I + G T++GKTT NA
Sbjct: 118 KMGAFSETVTEATDNPVDRHLDLLLRQKKIKEFLEYAVISKKNIIISGGTSTGKTTFTNA 177
Query: 304 IIPFIKPGSKVFTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYI 362
+ I ++ T ED E+ + HP L+ + G ++VT DL++A LR RP+ I
Sbjct: 178 TLRAIPAEERIITVEDAREIVLNDHPNKVHLIASKGGQGRAKVTTQDLIEACLRLRPDRI 237
Query: 363 IVGEIRGAEGNIAFQAMQTGHP-VMATFHAG-------DIKKMI-QRFTGSPINVPITFI 413
IVGE+RGAE +A+ TGHP ++T HA IK M+ Q G P + I +I
Sbjct: 238 IVGELRGAEAFSFLRAINTGHPGSISTLHADSPTMALEQIKLMVMQANLGIPPDQIIPYI 297
Query: 414 DNL 416
N+
Sbjct: 298 RNV 300
>pir||G64460 hypothetical protein MJ1288 - Methanococcus jannaschii
Length = 252
Score = 96.0 bits (235), Expect = 1e-18
Identities = 60/179 (33%), Positives = 104/179 (57%), Gaps = 7/179 (3%)
Query: 65 YGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEA 124
Y + + +YIVIEP I T+EE + + ++ + L ++P E+ + E+ L++ +E
Sbjct: 73 YDNVEKTKKYIVIEP-ILTKEEIKLFLKLRKVVQALL---DVPVEEIDKEK-LEDYLKEK 127
Query: 125 VLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVH 183
+ + K LT+ K Y + + +IG G ++ + +D LEDI G V V H
Sbjct: 128 IKEIFDDLK-LTLDDVTRHKLIYFLIKYLIGYGKIDALMKDENLEDISCTGVGKPVYVFH 186
Query: 184 KIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVS 242
+ ++HL TNIK++ + EL + +L++R G+ ++ NPIVDG+LPDGSR+N+ D+S
Sbjct: 187 RKYEHLKTNIKFETDEELDSFCISLAQRCGKSLTLANPIVDGSLPDGSRLNVTLGRDIS 245
>sp|Q58684|YC88_METJA HYPOTHETICAL PROTEIN MJ1288 >gi|2826386|gb|AAB99290.1| (U67569)
type II secretion system protein [Methanococcus
jannaschii]
Length = 252
Score = 96.0 bits (235), Expect = 1e-18
Identities = 60/179 (33%), Positives = 104/179 (57%), Gaps = 7/179 (3%)
Query: 65 YGDPQTETQYIVIEPRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEA 124
Y + + +YIVIEP I T+EE + + ++ + L ++P E+ + E+ L++ +E
Sbjct: 73 YDNVEKTKKYIVIEP-ILTKEEIKLFLKLRKVVQALL---DVPVEEIDKEK-LEDYLKEK 127
Query: 125 VLSLVKGRKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVH 183
+ + K LT+ K Y + + +IG G ++ + +D LEDI G V V H
Sbjct: 128 IKEIFDDLK-LTLDDVTRHKLIYFLIKYLIGYGKIDALMKDENLEDISCTGVGKPVYVFH 186
Query: 184 KIFQHLPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVS 242
+ ++HL TNIK++ + EL + +L++R G+ ++ NPIVDG+LPDGSR+N+ D+S
Sbjct: 187 RKYEHLKTNIKFETDEELDSFCISLAQRCGKSLTLANPIVDGSLPDGSRLNVTLGRDIS 245
>pir||D70788 probable trbB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960083|emb|CAA17981.1| (AL022121) trbB
[Mycobacterium tuberculosis]
Length = 352
Score = 94.4 bits (231), Expect = 3e-18
Identities = 73/254 (28%), Positives = 118/254 (45%), Gaps = 10/254 (3%)
Query: 148 LIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLKN 207
+++ ++ G G LEP+ D+ + + V V + I++ D + +
Sbjct: 13 VLQTELTGAGILEPLLSADGTTDVLVTAPDSVWVDDGNGLRR-SQIRFADESAVRRLAQR 71
Query: 208 LSERIGRPVSDRNPIVDGTLPD------GSRINIIYSPDVSLKGPSATIRKFAATPLSIT 261
L+ GR + D P VDG L R++ + P V+ +G ++R +
Sbjct: 72 LALAAGRRLDDAQPWVDGQLTGIGVGGFAVRLHAVLPP-VATQGTCLSLRVLRPATQDLA 130
Query: 262 QLIAWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTP 321
L A G + AA + + ++ VCG T +GKTT L A++ + P ++ ED
Sbjct: 131 ALAAAGAIDPAAAALVADIVTARLAFLVCGGTGAGKTTLLAAMLGAVSPDERIVCVEDAA 190
Query: 322 EVQVPHPTWQRLVTRERGPEE-SRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQ 380
E+ HP +LV R E VT+ L++ ALR RP+ I+VGE+RGAE A+
Sbjct: 191 ELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVGEVRGAEVVDLLAALN 250
Query: 381 TGHPVMA-TFHAGD 393
TGH A T HA +
Sbjct: 251 TGHEGGAGTVHANN 264
>gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog [Bartonella henselae]
Length = 356
Score = 91.7 bits (224), Expect = 2e-17
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 48/286 (16%)
Query: 159 LEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIK-WK-------DNIELADYLKNLSE 210
LEPI+ +L+D ++ + V+++ +Q + ++ WK EL K ++
Sbjct: 20 LEPIST--FLKDENL----FEIVINRPYQVMTEGVEGWKTIETPALSFNELMGIAKVVAS 73
Query: 211 RIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMS 270
+ +S++NPI+ TLP RI I+ P V S TIRK ++ S+ L G S
Sbjct: 74 YSKQNISEKNPILSATLPGNERIQIVIPPAVEKNTISMTIRKPSSRSFSLEDLANKGLFS 133
Query: 271 A---------------------------------EIAAYLWLAIEYGMSIFVCGETASGK 297
+ +L A++ +I + G+T SGK
Sbjct: 134 VCEQVSFTPLNNYLSHLSELKHIDHDLVRAYAKKDFVFFLNQAVQCQKNILIAGKTGSGK 193
Query: 298 TTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRS 357
TT A+I I ++ T EDTPE+ VP P + ++ + G + V +LL++ALR
Sbjct: 194 TTLSKALIAKIPDDERIITIEDTPELVVPQPNYVSMIYSKDGQGLASVGPKELLESALRM 253
Query: 358 RPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAGDIKKMIQRFT 402
RP+ I++ E+R + + +GHP + T HA ++ T
Sbjct: 254 RPDRILLQELRDGTAFYYIRNVNSGHPGSITTVHASTALAAFEQMT 299
>emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumophila]
Length = 334
Score = 90.9 bits (222), Expect = 3e-17
Identities = 66/213 (30%), Positives = 102/213 (46%), Gaps = 30/213 (14%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAA 275
+S+ P++ G L DGSR+ ++ P + + +IRKF+ +S + G S+
Sbjct: 75 LSESTPVLSGNLADGSRVQLVIPPASLYE--TLSIRKFSLKQVSFDEYKTKGFFSSARGV 132
Query: 276 --------------------------YLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
++ AI +I + G T+SGKTT LN+ + I
Sbjct: 133 GIKEHSECLDKSDELLELYDTKNWQEFIRQAIVSKKNIIISGGTSSGKTTFLNSCVGQIP 192
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRL-VTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIR 368
++ T EDT E+ VPH RL ++ G + ++T+ DL++A LR RP+ II+GEIR
Sbjct: 193 LHERLITLEDTYEMDVPHTNIVRLKALKQVGEQTQKITMQDLVQATLRLRPDRIIMGEIR 252
Query: 369 GAEGNIAFQAMQTGHP-VMATFHAGDIKKMIQR 400
G E A TGH +AT HA + K R
Sbjct: 253 GRELFDFVSACSTGHSGALATIHANNPKVAFMR 285
>pir||G71684 virB11 protein (virB11) RP292 - Rickettsia prowazekii
>gi|3860853|emb|CAA14753.1| (AJ235271) VIRB11 PROTEIN
(virB11) [Rickettsia prowazekii]
Length = 334
Score = 90.9 bits (222), Expect = 3e-17
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMS----- 270
+S+ P++ TLP+G RI I++ P + +IRK + L++ + G
Sbjct: 71 ISEEKPLLSATLPNGYRIQIVFPPACEIGQIIYSIRKPSGMNLTLDEYAQMGAFDNTATE 130
Query: 271 ----------------AEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKV 314
+I ++ A+ +I + G T++GKTT NA + I ++
Sbjct: 131 SLVDEDADILNNFLAEKKIKEFIRYAVISKKNIIISGGTSTGKTTFTNAALTEIPAIERL 190
Query: 315 FTAEDTPEVQVP-HPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGN 373
T ED EV + HP L+ + G + VT DL++A LR RP+ IIVGE+RG E
Sbjct: 191 ITVEDAREVVLSSHPNRVHLLASKGGQGRANVTTQDLIEACLRLRPDRIIVGELRGKEAF 250
Query: 374 IAFQAMQTGHP-VMATFHA 391
+A+ TGHP ++T HA
Sbjct: 251 SFLRAINTGHPGSISTLHA 269
>gi|10955211 TrbB [Enterobacter aerogenes] >gi|7444255|pir||T08499 trbB protein
- Enterobacter aerogenes plasmid R751
>gi|466380|gb|AAA17043.1| (U07618) TrbB [Plasmid R751]
>gi|1572548|gb|AAC64443.1| (U67194) TrbB [Enterobacter
aerogenes]
Length = 320
Score = 90.1 bits (220), Expect = 6e-17
Identities = 80/244 (32%), Positives = 112/244 (45%), Gaps = 24/244 (9%)
Query: 213 GRPVSDRNPIVDGTLP-DGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSA 271
G+ V+ PI++G LP DGSR P V P+ IRK ++ Q + G M+A
Sbjct: 79 GKEVTRSKPILEGELPLDGSRFAGQLPPVVP--APTFAIRKKGVAIFTLDQYVERGIMTA 136
Query: 272 EIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI---KPGSKVFTAEDTPEVQVPHP 328
L A+ +I V G T SGKTT +NAII + P +VF EDT E+Q
Sbjct: 137 PQREALIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAE 196
Query: 329 TWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMA 387
+ + T V + LLK LR RP+ I+VGE+RG E A TGH A
Sbjct: 197 NYVQYHT------SIDVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAA 250
Query: 388 TFHAGDIKKMIQRFT-------GSPINVPITFIDNLNIALFQQAVYVKGKFLRRVINVVE 440
T HA + K + R SP PI + + + V+G RR+ ++E
Sbjct: 251 TLHANNAKAGLDRLAMLISMHPDSP--KPIEPLIGEAVHVVVHIARVEGS--RRIQEILE 306
Query: 441 IEGY 444
+ G+
Sbjct: 307 VSGF 310
>dbj|BAA28705.1| (AB011800) virB11 [Agrobacterium tumefaciens]
Length = 344
Score = 89.7 bits (219), Expect = 7e-17
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 33/265 (12%)
Query: 159 LEPIAR---DPYLEDIHIIGANYVSVVHK-IFQHLPTNIKWKDNIELADYLKNLSERIGR 214
L+PI DP E++ I V +F P ++ + D ++A L ++
Sbjct: 11 LKPILEWLDDPRTEEVAINRPGEAFVRQAGVFTKFPLSVSYDDLEDIAILAGALRKQ--- 67
Query: 215 PVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIA--------- 265
V RNP+ LPDG R+ I P V S TIR+ + + ++ +
Sbjct: 68 DVGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSFRVSGLKEVSSRYDAPRWNQ 127
Query: 266 WGTM----------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
W T + ++ A+L + +S+ +CG T SGKTT +I I
Sbjct: 128 WQTRKMRQDQHDEVILRHYDNGDLEAFLHACVVGRLSMLLCGPTGSGKTTMSKTLISAIP 187
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRG 369
P ++ T EDT E+ +PH RL+ + G VT LL+A+LR RP+ I++GE+R
Sbjct: 188 PQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRD 247
Query: 370 AEGNIAFQAMQTGHP-VMATFHAGD 393
+ +GHP ++T H +
Sbjct: 248 DAAWAYLSEVVSGHPGSISTIHGAN 272
>gb|AAA88655.1| (J03216) unknown protein [Plasmid Ti]
Length = 343
Score = 89.7 bits (219), Expect = 7e-17
Identities = 80/299 (26%), Positives = 132/299 (43%), Gaps = 40/299 (13%)
Query: 159 LEPIAR---DPYLEDIHIIGANYVSVVHK-IFQHLPTNIKWKDNIELADYLKNLSERIGR 214
L+PI DP E+I I V IF +P + + D ++A L ++
Sbjct: 11 LKPILEWLDDPKTEEIAINRPGEAFVRQAGIFTKMPLPVSYDDLEDIAILAGALRKQ--- 67
Query: 215 PVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIA--------- 265
V RNP+ LP G R+ I P V S TIR+ ++ + ++ +
Sbjct: 68 DVGPRNPLCATELPGGERLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQ 127
Query: 266 WGTM----------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
W T + ++ A+L + +++ +CG T SGKTT +I I
Sbjct: 128 WQTRRKRQNQDDEAILQHFDNGDLEAFLHACVVSRLTMLLCGPTGSGKTTMSKTLISAIP 187
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRG 369
P ++ T EDT E+ +PH RL+ + G V+ LL+A+LR RP+ I++GE+R
Sbjct: 188 PQERLITIEDTLELVIPHDNHVRLLYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRD 247
Query: 370 AEGNIAFQAMQTGHP-VMATFHAGDIKKMIQRFT-------GSPINVPITFIDNLNIAL 420
+ +GHP ++T H +I+ + F+ G+ T ID L+ A+
Sbjct: 248 DAAWAYLSEVVSGHPGSISTIHGANIQGFKKLFSLVKSSVQGASFPEDRTLIDMLSTAI 306
>gi|10954837 Probable trbB gene [Agrobacterium tumefaciens]
>gi|2982705|dbj|BAA25274.1| (AB006858) trbB
[Agrobacterium tumefaciens] >gi|3766175|gb|AAC82628.1|
(AF057718) TrbB [Agrobacterium tumefaciens]
>gi|6498190|dbj|BAA87642.1| (AB016260) Probable trbB
gene [Agrobacterium tumefaciens]
Length = 323
Score = 87.8 bits (214), Expect = 3e-16
Identities = 75/235 (31%), Positives = 110/235 (45%), Gaps = 18/235 (7%)
Query: 218 DRNPIVDGTLP-DGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAY 276
D PI+ G LP G R + P VS GPS TIR+ A+ + + + M+A +
Sbjct: 79 DEQPIISGELPIGGHRFEGLLPPVVS--GPSFTIRRRASRLIPLDDYVKHKIMTAAQVSV 136
Query: 277 LWLAIEYGMSIFVCGETASGKTTTLNAIIPFI---KPGSKVFTAEDTPEVQVPHPTWQRL 333
L AI M+I + G T SGKTT NA+I I P ++ EDT E+Q L
Sbjct: 137 LRSAIASRMNIVISGGTGSGKTTLANAVIAEIVANAPDDRIVILEDTAEIQCAAENAVAL 196
Query: 334 VTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAG 392
T + + + LLK+ +R RP+ IIVGE+R +A TGHP + T H+
Sbjct: 197 HTSD------TIDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSN 250
Query: 393 DIKKMIQR---FTGSPINVPITFIDNLNIALFQQAVYVKGKFLRRVINVVEIEGY 444
++R T P+ + + L ++ GK RRV V+ +EG+
Sbjct: 251 TAMSALRRLEQLTAEVSQQPMQEVIGEAVDLI-VSIERTGKG-RRVREVIHVEGF 303
>sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BXAG58 virB11 protein - Agrobacterium
tumefaciens plasmid pTiC58 >gi|39163|emb|CAA37364.1|
(X53264) ORF11 (virB11) (AA 1 - 344) [Agrobacterium
tumefaciens] >gi|154793|gb|AAA91601.1| (J03320) virB11
gene product [Plasmid Ti] >gi|737138|prf||1921363M
virB11 protein [Agrobacterium tumefaciens]
Length = 344
Score = 87.4 bits (213), Expect = 4e-16
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIA------WGTM 269
V RNP+ LPDG R+ I P V S TIR+ ++ S+ ++ + W
Sbjct: 69 VGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQW 128
Query: 270 -------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKP 310
+ ++ A+L + +++ +CG T SGKTT +I I P
Sbjct: 129 KERKKRHAQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPP 188
Query: 311 GSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGA 370
++ T EDT E+ +PH RL+ + G VT LL+A+LR RP+ I++GEIR
Sbjct: 189 QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDD 248
Query: 371 EGNIAFQAMQTGHP-VMATFHAGD 393
+ +GHP ++T H +
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGAN 272
>gi|10954971 Probable virB11 gene [Agrobacterium tumefaciens]
>gi|6498324|dbj|BAA87776.1| (AB016260) Probable virB11
gene [Agrobacterium tumefaciens]
Length = 344
Score = 87.4 bits (213), Expect = 4e-16
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIA------WGTM 269
V RNP+ LPDG R+ I P V S TIR+ ++ S+ ++ + W
Sbjct: 69 VGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQW 128
Query: 270 -------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKP 310
+ ++ A+L + +++ +CG T SGKTT +I I P
Sbjct: 129 KGRKKRHDQHDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPP 188
Query: 311 GSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGA 370
++ T EDT E+ +PH RL+ + G VT LL+A+LR RP+ I++GEIR
Sbjct: 189 QERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDD 248
Query: 371 EGNIAFQAMQTGHP-VMATFHAGD 393
+ +GHP ++T H +
Sbjct: 249 AAWAYLSEVVSGHPGSISTIHGAN 272
>gi|10955153 virB11 [Agrobacterium tumefaciens] >gi|138453|sp|P05360|VIBY_AGRT9
VIRB11 PROTEIN >gi|73235|pir||BXAG55 virB11 protein -
Agrobacterium tumefaciens plasmid pTi15955 and pTiA6
>gi|757733|emb|CAA29982.1| (X06826) VirB11 protein
[Agrobacterium tumefaciens] >gi|8572725|gb|AAF77171.1|
(AF242881) virB11 [Agrobacterium tumefaciens]
Length = 343
Score = 87.0 bits (212), Expect = 5e-16
Identities = 80/299 (26%), Positives = 130/299 (42%), Gaps = 40/299 (13%)
Query: 159 LEPIAR---DPYLEDIHIIGANYVSVVHK-IFQHLPTNIKWKDNIELADYLKNLSERIGR 214
L+PI DP E+I I V IF +P + + D ++A L ++
Sbjct: 11 LKPILEWLDDPKTEEIAINRPGEAFVRQAGIFTKMPLPVSYDDLEDIAILAGALRKQ--- 67
Query: 215 PVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIA--------- 265
V RNP+ LP G R+ I P V S TIR+ ++ + ++ +
Sbjct: 68 DVGPRNPLCATELPGGERLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQ 127
Query: 266 WGTM----------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
W T + ++ A+L + +++ +CG T SGKTT +I I
Sbjct: 128 WQTRRKRQNQDDEAILQHFDNGDLEAFLHACVVSRLTMLLCGPTGSGKTTMSKTLISAIP 187
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRG 369
P ++ T EDT E+ +PH RL+ + G V+ LL+A+LR RP+ I++GE+R
Sbjct: 188 PQERLITIEDTLELVIPHDNHVRLLYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRD 247
Query: 370 AEGNIAFQAMQTGHP-VMATFHAGD----IKKMIQRFTGSPINVPI---TFIDNLNIAL 420
+ +GHP ++T H + KK+ S + T ID L+ A+
Sbjct: 248 DAAWAYLSEVVSGHPGSISTIHGANPIQGFKKLFSLVKSSVQGASLEDRTLIDMLSTAI 306
>gi|10955104 trbB [Agrobacterium tumefaciens] >gi|1730018|sp|P54907|TRBB_AGRTU
CONJUGAL TRANSFER PROTEIN TRBB
>gi|1163216|gb|AAB95094.1| (AF242881) trbB
[Agrobacterium tumefaciens]
Length = 323
Score = 87.0 bits (212), Expect = 5e-16
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 16/234 (6%)
Query: 218 DRNPIVDGTLP-DGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAAY 276
D PI+ G LP G R + P VS GP+ TIR+ A+ + + + M+ A+
Sbjct: 79 DERPIISGELPIGGHRFEGLLPPIVS--GPAFTIRRRASRLIPLDDYVTSKVMTEAQASA 136
Query: 277 LWLAIEYGMSIFVCGETASGKTTTLNAIIPFI---KPGSKVFTAEDTPEVQVPHPTWQRL 333
+ AI+ M+I + G T SGKTT NAII I P ++ EDT E+Q L
Sbjct: 137 IRSAIDSRMNIVISGGTGSGKTTLANAIIAEIVTAAPDDRLVILEDTAEIQCAAENAVSL 196
Query: 334 VTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHAG 392
T + V + LLK+ +R RP+ IIVGE+R +A TGHP + T H+
Sbjct: 197 HTSD------TVDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSN 250
Query: 393 DIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYVK--GKFLRRVINVVEIEGY 444
++R + + V ++ GK RRV V+ IEGY
Sbjct: 251 TALSALRRLEQLTAEASQQLMQEVIGEAVDLIVSIERSGKG-RRVREVIHIEGY 303
>pir||C44020 hypothetical protein trbB [imported] - plasmid RK2
>gi|152556|gb|AAA26428.1| (M93696) trbB [Plasmid RP4]
>gi|581214|emb|CAA42597.1| (X59971) KilB protein
[Escherichia coli]
Length = 319
Score = 85.0 bits (207), Expect = 2e-15
Identities = 68/193 (35%), Positives = 93/193 (47%), Gaps = 13/193 (6%)
Query: 213 GRPVSDRNPIVDGTLP-DGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSA 271
G+ V+ +PI++G P DGSR P V+ P+ IRK A ++ Q + G M+
Sbjct: 78 GKEVTRHSPILEGEFPLDGSRFAGQLPPVVA--APTFAIRKRAVAIFTLEQYVEAGIMTR 135
Query: 272 EIAAYLWLAIEYGMSIFVCGETASGKTTTLNAII---PFIKPGSKVFTAEDTPEVQVPHP 328
E + A+ +I V G T SGKTT +NAII P +V EDT E+Q
Sbjct: 136 EQYEVIKSAVAAHRNILVIGGTGSGKTTLVNAIINEMVAFNPSERVVIIEDTGEIQCAAE 195
Query: 329 TWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMA 387
+ T V++ LLK LR RP+ I+VGE+RG E A TGH A
Sbjct: 196 NAVQYHT------SIDVSMTLLLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAA 249
Query: 388 TFHAGDIKKMIQR 400
T HA + K + R
Sbjct: 250 TLHANNPKAGLSR 262
>gb|AAA26405.1| (L05600) klbA [Plasmid RK2]
Length = 298
Score = 85.0 bits (207), Expect = 2e-15
Identities = 68/193 (35%), Positives = 93/193 (47%), Gaps = 13/193 (6%)
Query: 213 GRPVSDRNPIVDGTLP-DGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSA 271
G+ V+ +PI++G P DGSR P V+ P+ IRK A ++ Q + G M+
Sbjct: 57 GKEVTRHSPILEGEFPLDGSRFAGQLPPVVA--APTFAIRKRAVAIFTLEQYVEAGIMTR 114
Query: 272 EIAAYLWLAIEYGMSIFVCGETASGKTTTLNAII---PFIKPGSKVFTAEDTPEVQVPHP 328
E + A+ +I V G T SGKTT +NAII P +V EDT E+Q
Sbjct: 115 EQYEVIKSAVAAHRNILVIGGTGSGKTTLVNAIINEMVAFNPSERVVIIEDTGEIQCAAE 174
Query: 329 TWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMA 387
+ T V++ LLK LR RP+ I+VGE+RG E A TGH A
Sbjct: 175 NAVQYHT------SIDVSMTLLLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAA 228
Query: 388 TFHAGDIKKMIQR 400
T HA + K + R
Sbjct: 229 TLHANNPKAGLSR 241
>sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBB >gi|2182338|gb|AAB92428.1|
(AE000068) TrbB [Rhizobium sp. NGR234]
Length = 325
Score = 85.0 bits (207), Expect = 2e-15
Identities = 64/189 (33%), Positives = 92/189 (47%), Gaps = 11/189 (5%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAA 275
V PI+ G LP G P V K PS TIR+ A+ + + + G M+ AA
Sbjct: 77 VDTEQPIISGELPIGGHRFEGLLPPVVAK-PSFTIRRRASRLIPLDDYVRSGVMTEAQAA 135
Query: 276 YLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI---KPGSKVFTAEDTPEVQVPHPTWQR 332
+ AI+ ++I + G TASGKTT NA+I I P ++ EDT E+Q
Sbjct: 136 TIRSAIDSRLNIIISGGTASGKTTLANAVIHEIVRSAPEDRLVILEDTAEIQCAADNAVL 195
Query: 333 LVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHA 391
L T + V + LLK+ +R RP+ I+VGE+R +A TGHP +AT H+
Sbjct: 196 LRTSD------TVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGHPGGVATIHS 249
Query: 392 GDIKKMIQR 400
++R
Sbjct: 250 NTATSALRR 258
>gi|10956306 pXO1-59 [Bacillus anthracis] >gi|7474299|pir||C59098 hypothetical
protein pXO1-59 - Bacillus anthracis virulence plasmid
pXO1 >gi|4894275|gb|AAD32363.1|AAD32363 (AF065404)
pXO1-59 [Bacillus anthracis]
Length = 477
Score = 85.0 bits (207), Expect = 2e-15
Identities = 87/353 (24%), Positives = 152/353 (42%), Gaps = 28/353 (7%)
Query: 114 ERFLDNLFEEAVLSLVKG---RKGLTITKDEMEKFRYLIKRDIIGIGPLEPIARDPYLED 170
E F++ AV ++K + I+ E+ ++ DI+G G +EP+ D + D
Sbjct: 63 ESFMNKEKRAAVEQIIKSFLLSNQVVISDVPSEQLLNMVCDDIVGFGIIEPLKEDKDVTD 122
Query: 171 IHIIGANYVSVVHKIFQH---LPTNIKWKDNIELADYLKNLSERIGRPVSDRNPIVDGTL 227
I+I G + + KI + P + ++ ++ Y + ++ VD
Sbjct: 123 IYINGTKEI-IYEKIGEGECTFPYRFETEEEVKALAY--KMVNSTSESLNTAKSYVDCVF 179
Query: 228 PDGSRINIIYSPDVSLKGPSATIRKFAA-TPLSITQLIAWGTMSAEIAAYLWLAIEYGMS 286
P RINI ++ G + TIRK A S ++++ S + +L A++ M+
Sbjct: 180 PY-IRINIALD-ELGGLGTTITIRKNADHLRASEERMLSTNQASKVMLDFLAAAVKSKMN 237
Query: 287 IFVCGETASGKTTTLNAIIPFIKPGSK---VFTAEDTPEVQV----PHPTWQRLVTRERG 339
I V G T +GK+ + + I G K ED PE+ + P + + R
Sbjct: 238 ILVAGATGTGKSEFMKYLASHIPKGKKKERTLVVEDNPELYLHRIFPEHHFVPMQCRASE 297
Query: 340 PEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQ 399
EE+ + LL ALR P +IVGE RG E QTGHP + HA K+ ++
Sbjct: 298 VEENAIDFDRLLTNALRQGPKRLIVGESRGKEALKMINFFQTGHPGFTSVHARSAKEAVR 357
Query: 400 RF----TGSPINVPITFIDNLNIALFQQAVYVKGK-----FLRRVINVVEIEG 443
R S N+ ++ L F V+++ K ++ +I +++ +G
Sbjct: 358 RLMLMCLQSGANIDAQYLYELISQTFDVIVFLEKKDDGNRYITEMIELLDYQG 410
>gi|10956726 conjugal transfer protein [Xylella fastidiosa]
>gi|11278170|pir||G82862 conjugal transfer protein
XFa0015 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9112253|gb|AAF85584.1|AE003851_15 (AE003851)
conjugal transfer protein [Xylella fastidiosa]
Length = 347
Score = 84.7 bits (206), Expect = 2e-15
Identities = 64/258 (24%), Positives = 112/258 (42%), Gaps = 37/258 (14%)
Query: 213 GRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTM--- 269
G+ ++ P++ LP G+R+ ++ P + S TIRK + ++ +L A G
Sbjct: 82 GKSITANKPVLSAALPGGARVQVVIPPACETRTVSITIRKPSMVDKTLDELEAEGAFDQV 141
Query: 270 ---------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI 308
S I +L LA+++G+++ + G+T SGKTT +I I
Sbjct: 142 ENVDASGTLHPYEVELLALKKSNRIKEFLKLAMQHGLTLVIVGKTGSGKTTIGKSITNCI 201
Query: 309 KPGSKVFTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEI 367
++ T ED E+ + HP L G + + + LR +P+ I++ E+
Sbjct: 202 PTDERLVTVEDVHEMFLNHHPNKVHLFYSRDGEGSLSINPKQAIASCLRMKPDRILLTEM 261
Query: 368 RGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYV 427
RG E +A+ +GHP ++T HAG + + + I + A Y+
Sbjct: 262 RGDEAWEFVKAVGSGHPGISTAHAGGALEAFDQI--------VALIKDSATGAHLDAAYI 313
Query: 428 KGKFLRRVINVVEIEGYY 445
K +RV V+I YY
Sbjct: 314 K----KRVFETVDIVLYY 327
>gi|10954435 ATPase [Actinobacillus actinomycetemcomitans]
>gi|10880912|gb|AAG24426.1|AF302424_26 (AF302424) ATPase
[Actinobacillus actinomycetemcomitans]
Length = 343
Score = 84.3 bits (205), Expect = 3e-15
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 24/221 (10%)
Query: 204 YLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQL 263
+ + L++ G +SD PI+ LP+G R II P + S T+RK + +
Sbjct: 63 FXRALAKYRGDYISDTKPILSAVLPNGERTQIILPPASERETISITVRKPNKSFFDLDYY 122
Query: 264 IAWGTMSAEI----------------------AAYLWLAIEYGMSIFVCGETASGKTTTL 301
I G S I A +L A+ G +I + GET SGKTT +
Sbjct: 123 INNGFFSRVIKTENRLSDDDRTLLEIYHKGDYAEFLKQAVICGKNIVIAGETGSGKTTLM 182
Query: 302 NAIIPFIKPGSKVFTAEDTPEVQV-PHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPN 360
A++ +I ++ T EDTPE+ + H + L +T LLK+ LR +P+
Sbjct: 183 KALVDYIPLHERLGTIEDTPELFLRQHKNYFHLFYPSEAKNGDLITAASLLKSCLRMKPD 242
Query: 361 YIIVGEIRGAEGNIAFQAMQTGH-PVMATFHAGDIKKMIQR 400
I++ E+RG E + +GH + + HAG + + +R
Sbjct: 243 RILLAELRGGETYDFINVVSSGHNGSITSCHAGSVAETWER 283
>gi|10956415 pXO2-25 [Bacillus anthracis] >gi|6470176|gb|AAF13630.1|AF188935_28
(AF188935) pXO2-25 [Bacillus anthracis]
Length = 443
Score = 83.9 bits (204), Expect = 4e-15
Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 41/396 (10%)
Query: 135 LTITKDEMEKFRYLIKRDIIGIGPLEPIARD-PYLEDIHIIGANYVSVVHKIFQHLPTNI 193
+ I +D+++ + +++G G +E + +D P + DI G+ H I +
Sbjct: 65 MDIDEDKVDDVIEYVVSELVGTGVIERLIKDRPDITDISYNGS------HLIVESSDYKE 118
Query: 194 KWKDNIE------LADYLKNLSERIGRPVSDRNPIVDGTLPDGS-RINIIYSPDVSLKGP 246
+KDN + ++ + +G+ + +NPI DG GS RIN ++S + +
Sbjct: 119 IYKDNEHQITEQYITRLIQKFAHAVGKEFTPKNPIFDGVY--GSIRINAVHSQNTN---G 173
Query: 247 SATIRKFAATPLSITQLIAWGTMSAE-IAAYLWLAIEYGMSIFVCGETASGKTTTLNAII 305
++T+ P + + T + + I + + +E +I + GET +GKT L +
Sbjct: 174 NSTMSLRIVRPNLVLNEKNFETFAPQFIYDFFKVVMESRNNILISGETGTGKTEVLKLLF 233
Query: 306 PFIKPGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVG 365
F++ K ED PE V + V + VT+ D + AALR+ P +I++
Sbjct: 234 SFVRFDHKAIMIEDVPETHVKSLFPDKDVFSWL--TGNGVTVTDEIVAALRNNPRWIMIS 291
Query: 366 EIRGAEGNIAFQAMQTGHPVMATFHAGDIKKMIQRFTG-SPINVPI-------TFIDNLN 417
E+RG E QA+ +GH V+ + H+ D + +R S I + + N
Sbjct: 292 ELRGKETYEMIQAVLSGHHVVTSLHSVDAETSPKRLVNMSKIGYQVDEKSLEEDIMRYFN 351
Query: 418 IALFQQAVYVK-----GKFLRRVIN-VVEIEGYYEELGGVATRNVFEWDPVSDKHIFRGM 471
+ V VK GK ++RV+ + +I Y E + VFE + K F
Sbjct: 352 FGFHIKRVVVKTTDTTGKPIKRVVRYLAKIVEYSVE----GCQMVFEQKYRNGKFTFSTG 407
Query: 472 NNSYILENKIAEI-AGFEDPKAIYDELFLRARILQR 506
S +K+AEI +E PK + F + I+ R
Sbjct: 408 TLSEEFHDKLAEIDLSYELPKYTDEVAFKKGLIISR 443
>pir||F47301 VirB11 homolog - Bordetella pertussis
Length = 339
Score = 83.9 bits (204), Expect = 4e-15
Identities = 66/213 (30%), Positives = 99/213 (45%), Gaps = 25/213 (11%)
Query: 214 RPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAW-----GT 268
R + P++ +LP G R+ I+ P S TIRK A +++L+ G
Sbjct: 73 RDICPERPLLAASLPGGERVQIVVPPACEPGTLSLTIRKPARRIWPLSELLRDTLDLPGV 132
Query: 269 MSAEIAA---------------YLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSK 313
A A +L LA++ G +I V G+T SGKTT +NA+ I P +
Sbjct: 133 PGASQARPDPLLDPWRRGAWDDFLRLAVQAGKAILVAGQTGSGKTTLMNALSGEIPPRER 192
Query: 314 VFTAEDTPEVQVPHPTWQRLVTRERGPEESR---VTLFDLLKAALRSRPNYIIVGEIRGA 370
+ T ED E+++ P + P E R V+ +LL+AALR P I++ E+RG
Sbjct: 193 IVTIEDVRELRL-DPATNHVHLLYGTPTEGRTAAVSATELLRAALRMAPTRILLAELRGG 251
Query: 371 EGNIAFQAMQTGHP-VMATFHAGDIKKMIQRFT 402
E QA +GH ++T HA +QR T
Sbjct: 252 EAFDFLQACASGHSGGISTCHAASADMALQRLT 284
>gi|10954776 probable trbB gene [Agrobacterium rhizogenes]
>gi|10567440|dbj|BAB16249.1| (AP002086) probable trbB
gene [Agrobacterium rhizogenes]
Length = 325
Score = 81.1 bits (197), Expect = 3e-14
Identities = 72/243 (29%), Positives = 113/243 (45%), Gaps = 22/243 (9%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTMSAEIAA 275
V PI+ G LP G P V K P+ TIR+ A+ + + + G M+ A+
Sbjct: 77 VDTEQPIISGELPIGGHRFEGLLPPVVAK-PAFTIRRRASRLIPLEDYVRTGVMTEYQAS 135
Query: 276 YLWLAIEYGMSIFVCGETASGKTTTLNAIIPFI---KPGSKVFTAEDTPEVQVPHPTWQR 332
+ AI ++I + G T SGKTT NA+I I P ++ EDT E+Q
Sbjct: 136 TIRSAISARLNIVISGGTGSGKTTLANAVIDEIVKSAPEDRLVILEDTAEIQCTAENAVL 195
Query: 333 LVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMATFHA 391
L T + + + LLK+ +R RP+ I+VGE+R +A TGHP +AT H+
Sbjct: 196 LHTSD------TIDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGHPGGVATIHS 249
Query: 392 GDIKKMIQRF-------TGSPINVPITFIDNLNIALFQQAVYVKGKFLRRVINVVE-IEG 443
++R + P++ I +L I++ + +G+ +R +I V I G
Sbjct: 250 NTAMSALRRLEQLTAEASQQPMHEVIGEAVDLVISIERTP---RGRLVRDIIQVERFING 306
Query: 444 YYE 446
YE
Sbjct: 307 RYE 309
>gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobium etli]
Length = 369
Score = 81.1 bits (197), Expect = 3e-14
Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 33/238 (13%)
Query: 216 VSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSIT------QLIAWGTM 269
V RNP+ LP G R+ I P V S TIR+ A+ + + W
Sbjct: 94 VGPRNPLCATELPGGERLQICLPPAVLAGTVSLTIRRPASHVSGLNGVTDRYDVSRWNQW 153
Query: 270 -------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKP 310
S ++ A+L + +++ +CG T SGKTT +I I P
Sbjct: 154 ERRKRRRDQQDETILRHYDSGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP 213
Query: 311 GSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGA 370
++ T EDT E+ +PH RL+ + VT LL+A+LR RP+ I++GE+R
Sbjct: 214 QERLITIEDTLELVIPHENHVRLLYAKNAGGPDAVTAEHLLQASLRMRPDRILLGEMRDD 273
Query: 371 EGNIAFQAMQTGHP-VMATFHAGD----IKKMIQRFTGSPINVPI---TFIDNLNIAL 420
+ +GHP ++T H + KK+ S + T ID L+ A+
Sbjct: 274 AAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSSQGAGLEDRTLIDMLSSAI 331
>emb|CAC12030.1| (AL445065) export type III nucleotide binding protein (Vir B11)
related protein [Thermoplasma acidophilum]
Length = 396
Score = 78.8 bits (191), Expect = 1e-13
Identities = 73/301 (24%), Positives = 134/301 (44%), Gaps = 17/301 (5%)
Query: 147 YLIKRDIIGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWKDNIELADYLK 206
Y I R + G+ + P+ + +E I G + +V ++ TNI K +L
Sbjct: 56 YYINRYMSGLRSVYPLYINDAIERIMSNGYDRPVIVQYNGKYYETNITLKRE-DLDSIAI 114
Query: 207 NLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATI--RKFAATPLSITQLI 264
+S+ +G+ +S +PI G L + I + + DV+ G S + R A P +++ +
Sbjct: 115 RVSQMMGKKISSGSPIAYGNLQNFRSI-VTFGDDVTPFGSSLYLERRHVVADPEAMSSM- 172
Query: 265 AWGTMSAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQ 324
++AYL +A+E SI + G + K + +I I K+ +
Sbjct: 173 ----KDPMVSAYLIMALENMRSIMIIGPDSPMKIAIIYHLIRMIGSEKKIAYIGENGRFD 228
Query: 325 VPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP 384
P ++ RER S ++ DL+ ALR RP++I+V + E A QA+ TGHP
Sbjct: 229 FPRNIVY-MMPRERTVFSSEISRTDLINTALRQRPDFIVVNGLTARELPAAVQAITTGHP 287
Query: 385 VMATFHAGDIKKMIQRFTGSPINVPITFIDNLNIALFQQAVYV--KGKFLRRVINVVEIE 442
+++ I+ F+ P T + I+LF + + G++++ + +E
Sbjct: 288 TLSSMDIDSIENFSSLFSD-----PSTGLSKDMISLFDVVIEIADNGEYVKAIYEYDRLE 342
Query: 443 G 443
G
Sbjct: 343 G 343
>gb|AAF73904.1|AF226278_11 (AF226278) VirB11 [Brucella abortus]
Length = 362
Score = 78.4 bits (190), Expect = 2e-13
Identities = 60/215 (27%), Positives = 93/215 (42%), Gaps = 26/215 (12%)
Query: 212 IGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTM-- 269
+ + +SD P++ LP G RI I+ P S TIRK + T ++ G
Sbjct: 81 VDQDISDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFTRRTLEDYAQQGFFKH 140
Query: 270 --------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
+ + ++L A++ I V GET SGKTT + A++ I
Sbjct: 141 VRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200
Query: 310 PGSKVFTAEDTPEVQVP-HPTWQRLVTRERGPEESR--VTLFDLLKAALRSRPNYIIVGE 366
++ T ED PE+ +P HP L EE VT LL++ LR +P I++ E
Sbjct: 201 FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAE 260
Query: 367 IRGAEGNIAFQAMQTGH-PVMATFHAGDIKKMIQR 400
+RG E +GH + + HAG + +R
Sbjct: 261 LRGGETYDFINVAASGHGGSITSCHAGSCELTFER 295
>pir||E64585 virB11 homolog - Helicobacter pylori (strain 26695)
>gi|2313639|gb|AAD07592.1| (AE000566) virB11 homolog
[Helicobacter pylori 26695]
>gi|8843975|gb|AAF80196.1|AF282852_6 (AF282852) Cag-alfa
[Helicobacter pylori]
Length = 330
Score = 76.5 bits (185), Expect = 7e-13
Identities = 56/194 (28%), Positives = 92/194 (46%), Gaps = 24/194 (12%)
Query: 220 NPIVDGTLPDGSRINIIYSP--------DVSLKGPSATIRKFAATPLSITQLIAWGTM-- 269
NPI+ L +G R+ I+ SP +S++ PS T P S + + +
Sbjct: 101 NPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKT-----TYPHSFFEEQGFYNLLD 155
Query: 270 -SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVP-H 327
+ + + I G ++ VCG T SGKTT + +I+ FI ++ + EDT E+ H
Sbjct: 156 NKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHH 215
Query: 328 PTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VM 386
+ +L +T D LK+ LR RP+ II+GE+R +E + + +GH +
Sbjct: 216 KNYTQLFF------GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTL 269
Query: 387 ATFHAGDIKKMIQR 400
T HAG ++ R
Sbjct: 270 TTLHAGSSEEAFIR 283
>pir||G71927 cag island protein, DNA transfer protein - Helicobacter pylori
(strain J99) >gi|4155017|gb|AAD06057.1| (AE001481) cag
island protein, DNA transfer protein [Helicobacter
pylori J99]
Length = 330
Score = 76.5 bits (185), Expect = 7e-13
Identities = 56/194 (28%), Positives = 92/194 (46%), Gaps = 24/194 (12%)
Query: 220 NPIVDGTLPDGSRINIIYSP--------DVSLKGPSATIRKFAATPLSITQLIAWGTM-- 269
NPI+ L +G R+ I+ SP +S++ PS T P S + + +
Sbjct: 101 NPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKT-----TYPHSFFEEQGFYNLLD 155
Query: 270 -SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVP-H 327
+ + + I G ++ VCG T SGKTT + +I+ FI ++ + EDT E+ H
Sbjct: 156 NKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHH 215
Query: 328 PTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VM 386
+ +L +T D LK+ LR RP+ II+GE+R +E + + +GH +
Sbjct: 216 KNYTQLFF------GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTL 269
Query: 387 ATFHAGDIKKMIQR 400
T HAG ++ R
Sbjct: 270 TTLHAGSSEEAFIR 283
>gb|AAD15210.1| (M36786) virulence protein [Plasmid pTiC58]
>gi|809650|emb|CAA68594.1| (Y00535) virB [Agrobacterium
tumefaciens]
Length = 251
Score = 75.7 bits (183), Expect = 1e-12
Identities = 42/125 (33%), Positives = 68/125 (53%), Gaps = 1/125 (0%)
Query: 270 SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIKPGSKVFTAEDTPEVQVPHPT 329
+ ++ A+L + +++ +CG T SGKTT +I I P ++ T EDT E+ +PH
Sbjct: 55 NGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVIPHEN 114
Query: 330 WQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNIAFQAMQTGHP-VMAT 388
RL+ + G VT LL+A+LR RP+ I++GEIR + +GHP ++T
Sbjct: 115 HVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDDAAWAYLSEVVSGHPGSIST 174
Query: 389 FHAGD 393
H +
Sbjct: 175 IHGAN 179
>gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucella suis]
Length = 397
Score = 74.9 bits (181), Expect = 2e-12
Identities = 58/215 (26%), Positives = 91/215 (41%), Gaps = 26/215 (12%)
Query: 212 IGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLSITQLIAWGTM-- 269
+ + +SD P++ LP G RI I+ P S TIRK + ++ G
Sbjct: 81 VDQDISDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFPRRTLEDYAQQGFFKH 140
Query: 270 --------------------SAEIAAYLWLAIEYGMSIFVCGETASGKTTTLNAIIPFIK 309
+ + ++L A++ I V GET SGKTT + A++ I
Sbjct: 141 VRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200
Query: 310 PGSKVFTAEDTPEVQVP-HPTWQRLVTRERGPEESR--VTLFDLLKAALRSRPNYIIVGE 366
++ ED PE+ +P HP L EE VT LL++ LR +P I++ E
Sbjct: 201 FDQRLIAIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAE 260
Query: 367 IRGAEGNIAFQAMQTGH-PVMATFHAGDIKKMIQR 400
+RG E +GH + + HAG + +R
Sbjct: 261 LRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295
>sp|P25953|CMG1_BACSU COMG OPERON PROTEIN 1 >gi|98254|pir||B30338 late competence protein
comGA - Bacillus subtilis >gi|142706|gb|AAA83367.1|
(M29691) comG1 gene product [Bacillus subtilis]
>gi|1303877|dbj|BAA12533.1| (D84432) ComGA [Bacillus
subtilis] >gi|2634907|emb|CAB14404.1| (Z99116) late
competence gene [Bacillus subtilis]
Length = 356
Score = 74.9 bits (181), Expect = 2e-12
Identities = 76/247 (30%), Positives = 117/247 (46%), Gaps = 18/247 (7%)
Query: 170 DIHIIGANYVSVVHKIFQHL---PTNIKWKDNIELADYLKNLSER-IGRPVSDRNPIVDG 225
DIHI+ +++H H ++K ++ + L + K LS IG +N +
Sbjct: 22 DIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLTL 81
Query: 226 TLPDGSRINIIYSPDVSLKGPSATIRKFAATPL-SITQLIAWGTMSAEIAAYLWLAIEYG 284
L +G+ +++ S ++ S IR + SI +L + A + ++L +G
Sbjct: 82 KLKEGN-VHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFL--KHSHG 138
Query: 285 MSIFVCGETASGKTTTLNAIIPFIKP--GSKVFTAEDTPEVQVPHPTWQRLVTRERGPEE 342
M IF G T SGKTTTL +++ + K + T ED P T V + + E+
Sbjct: 139 MLIFT-GPTGSGKTTTLYSLVQYAKKHFNRNIVTLED------PVETRDEDVLQVQVNEK 191
Query: 343 SRVTLFDLLKAALRSRPNYIIVGEIRGAE-GNIAFQAMQTGHPVMATFHAGDIKKMIQRF 401
+ VT LKA LR P+ II+GEIR AE IA +A TGH V+ + H D K I R
Sbjct: 192 AGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLHTRDAKGAIYRL 251
Query: 402 TGSPINV 408
IN+
Sbjct: 252 LEFGINM 258
>pir||B70469 type IV pilus assembly protein TapB - Aquifex aeolicus
>gi|2984219|gb|AAC07748.1| (AE000766) type IV pilus
assembly protein TapB [Aquifex aeolicus]
Length = 566
Score = 73.4 bits (177), Expect = 6e-12
Identities = 91/332 (27%), Positives = 144/332 (42%), Gaps = 45/332 (13%)
Query: 79 PRIETREEEEKYQLIKDRILELAPTREIPEEQEEFERFLDNLFEEAVLSLVKGRKGLTIT 138
P + + +E + + + ILE P EI E+ + E LD + A + V L I
Sbjct: 132 PSVINKALDELFPKVTE-ILEEIPAEEIVIEKVDEEVSLDEALKSADAAPVVKLANLIIY 190
Query: 139 KDEMEKFRYLIKRDI--IGIGPLEPIARDPYLEDIHIIGANYVSVVHKIFQHLPTNIKWK 196
+ ++RD I I P E + R + D V +IF+ P IK
Sbjct: 191 E--------AVRRDASDIHIEPQEKVLRVRFRID----------GVLRIFKEFPPVIK-- 230
Query: 197 DNIELADYLKNLSERIGRPVSDRNPIVDGTLP---DGSRINIIYSPDVSLKGPSATIRKF 253
D + + + +S+R DG + G +I++ + ++ G +R
Sbjct: 231 DGL-----ITRIKIMANMDISERRKPQDGRIRVNVSGKKIDLRVNTVPTVYGEKVVMRIQ 285
Query: 254 AATPLSITQLIAWGTMSAEIAAY---LWLAIEYGMSIFVCGETASGKTTTLNA-IIPFIK 309
A +L G ++ Y +W +GM I V G T SGKTTTL A ++
Sbjct: 286 EAEKYLKVKLEDLGFEPDDLEKYRRAIWKP--WGM-ILVSGPTGSGKTTTLYASLMERNT 342
Query: 310 PGSKVFTAEDTPEVQVPHPTWQRLVTRERGPEESRVTLFDLLKAALRSRPNYIIVGEIRG 369
P + T ED EV +P + + + E+ +T ++L+A LR P+ I+VGEIR
Sbjct: 343 PDVNIMTVEDPVEVSIPG------INQVQVNEKIGLTFANVLRAFLRQDPDIILVGEIRD 396
Query: 370 AE-GNIAFQAMQTGHPVMATFHAGDIKKMIQR 400
+E IA +A TGH V +T HA D + R
Sbjct: 397 SETAEIAIRASLTGHLVFSTVHANDAPTTVTR 428
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202052888
Number of Sequences: 2977
Number of extensions: 8924411
Number of successful extensions: 26207
Number of sequences better than 1.0e-10: 67
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26030
Number of HSP's gapped (non-prelim): 78
length of query: 537
length of database: 189,106,746
effective HSP length: 55
effective length of query: 482
effective length of database: 156,189,961
effective search space: 75283561202
effective search space used: 75283561202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)