BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1387 (flaJ-like) DE:FLAGELLA ACCESSORY PROTEIN J
(572 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75062 flagella accessory protein j PAB1387 - Pyrococcus ab... 1109 0.0
pir||C71170 hypothetical protein PH0559 - Pyrococcus horikoshii ... 1007 0.0
sp|Q58311|FLAJ_METJA FLAGELLA ACCESSORY PROTEIN J >gi|2128566|pi... 420 e-116
sp|O59649|FLAJ_METVO FLAGELLA ACCESSORY PROTEIN J >gi|3192885|gb... 360 3e-98
emb|CAC11700.1| (AL445064) hypothetical membrane protein [Thermo... 339 5e-92
gb|AAG19375.1| (AE005032) flagella accessory protein J; FapJ [Ha... 280 4e-74
gi|11498653 conserved hypothetical protein [Archaeoglobus fulgid... 138 2e-31
pir||G72576 hypothetical protein APE1895 - Aeropyrum pernix (str... 132 1e-29
gb|AAK42470.1| Flagella-related protein J, putative (FlaJ) [Sulf... 102 1e-20
gi|11498266 conserved hypothetical protein [Archaeoglobus fulgid... 80 5e-14
sp|Q58682|YC86_METJA HYPOTHETICAL PROTEIN MJ1286 >gi|2128764|pir... 73 1e-11
>pir||B75062 flagella accessory protein j PAB1387 - Pyrococcus abyssi (strain
Orsay) >gi|5458904|emb|CAB50391.1| (AJ248287) FLAGELLA
ACCESSORY PROTEIN J [Pyrococcus abyssi]
Length = 572
Score = 1109 bits (2838), Expect = 0.0
Identities = 572/572 (100%), Positives = 572/572 (100%)
Query: 1 MIKVPQEKISIFVKADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYL 60
MIKVPQEKISIFVKADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYL
Sbjct: 1 MIKVPQEKISIFVKADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYL 60
Query: 61 IPIIIAIYVAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLGA 120
IPIIIAIYVAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLGA
Sbjct: 61 IPIIIAIYVAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLGA 120
Query: 121 IAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQ 180
IAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQ
Sbjct: 121 IAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQ 180
Query: 181 QTVMDDYQTFYEGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFL 240
QTVMDDYQTFYEGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFL
Sbjct: 181 QTVMDDYQTFYEGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFL 240
Query: 241 ILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYFILIRPR 300
ILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYFILIRPR
Sbjct: 241 ILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYFILIRPR 300
Query: 301 FKLPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLK 360
FKLPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLK
Sbjct: 301 FKLPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLK 360
Query: 361 YLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEP 420
YLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEP
Sbjct: 361 YLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEP 420
Query: 421 DYVGKVISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKF 480
DYVGKVISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKF
Sbjct: 421 DYVGKVISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKF 480
Query: 481 QVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILL 540
QVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILL
Sbjct: 481 QVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILL 540
Query: 541 WVFAFGMYIGQTLMARFMSVGEGGMILHLLGV 572
WVFAFGMYIGQTLMARFMSVGEGGMILHLLGV
Sbjct: 541 WVFAFGMYIGQTLMARFMSVGEGGMILHLLGV 572
>pir||C71170 hypothetical protein PH0559 - Pyrococcus horikoshii
>gi|3256965|dbj|BAA29648.1| (AP000002) 573aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 573
Score = 1007 bits (2574), Expect = 0.0
Identities = 508/573 (88%), Positives = 544/573 (94%), Gaps = 1/573 (0%)
Query: 1 MIKVP-QEKISIFVKADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMY 59
MI +P +EKISIFVKADL+P+ Y+++IL+PGL GS +LF+V+ FTR+I LPRGLVFFMY
Sbjct: 1 MIPMPKEEKISIFVKADLNPKEYMKKILIPGLAGSGILFLVMGFFTRLITLPRGLVFFMY 60
Query: 60 LIPIIIAIYVAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLG 119
L+P IIA+YVAAYPYLAADSKR+SINSKLPYFITYFAVLSTSEIGRTDIL+VLA DPKLG
Sbjct: 61 LVPAIIAVYVAAYPYLAADSKRLSINSKLPYFITYFAVLSTSEIGRTDILRVLAKDPKLG 120
Query: 120 AIAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQE 179
AIA EMKKVY+IVDKLHRSLPEAFRFLAKRTPS+VFADFLDRLAYSLDSGVELKDYLFQE
Sbjct: 121 AIANEMKKVYIIVDKLHRSLPEAFRFLAKRTPSKVFADFLDRLAYSLDSGVELKDYLFQE 180
Query: 180 QQTVMDDYQTFYEGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAF 239
QQTVMDDYQTFYEGALYDLDIFKEIYES+IISIVFAGAFMIIGPI+TGQNIGRLALYLAF
Sbjct: 181 QQTVMDDYQTFYEGALYDLDIFKEIYESVIISIVFAGAFMIIGPILTGQNIGRLALYLAF 240
Query: 240 LILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYFILIRP 299
LIL AEIGSL+VIKYRMPEDPIWAEKRVETPR+R+IKRA IIS MLVPIVFLLYF LIRP
Sbjct: 241 LILAAEIGSLLVIKYRMPEDPIWAEKRVETPRYRRIKRAAIISGMLVPIVFLLYFALIRP 300
Query: 300 RFKLPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVL 359
RF LPTPFVIALSLTPLAY GNVVRKEE +IFRKDENFPAFIRSLASSLA+SGASLLLVL
Sbjct: 301 RFHLPTPFVIALSLTPLAYLGNVVRKEEGIIFRKDENFPAFIRSLASSLAASGASLLLVL 360
Query: 360 KYLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAE 419
KYLSAHDFG LTEDIR+LYRRLAVRVD+ RAWDFFIAETGSWLIGIFSEIFRESLRLGAE
Sbjct: 361 KYLSAHDFGMLTEDIRALYRRLAVRVDSARAWDFFIAETGSWLIGIFSEIFRESLRLGAE 420
Query: 420 PDYVGKVISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSK 479
PDYVGKVISRNFERLVRLRRKR+QSVSNFIGIILGLTGAFAFSLAASFQVAV IN IFSK
Sbjct: 421 PDYVGKVISRNFERLVRLRRKRLQSVSNFIGIILGLTGAFAFSLAASFQVAVTINSIFSK 480
Query: 480 FQVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVIL 539
FQVPTEYIG +IH+IPPSG+KLLDLSL++IMIVHSLLSALAIKVADGGNLL SLYYFVIL
Sbjct: 481 FQVPTEYIGNVIHVIPPSGLKLLDLSLIIIMIVHSLLSALAIKVADGGNLLASLYYFVIL 540
Query: 540 LWVFAFGMYIGQTLMARFMSVGEGGMILHLLGV 572
LWVFA GMYIGQ LM++FMSVG G +IL LLGV
Sbjct: 541 LWVFAIGMYIGQVLMSKFMSVGGGSLILFLLGV 573
>sp|Q58311|FLAJ_METJA FLAGELLA ACCESSORY PROTEIN J >gi|2128566|pir||E64412 hypothetical
protein MJ0901 - Methanococcus jannaschii
>gi|1591576|gb|AAB98904.1| (U67533) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 562
Score = 420 bits (1067), Expect = e-116
Identities = 228/554 (41%), Positives = 351/554 (63%), Gaps = 14/554 (2%)
Query: 14 KADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYLI-PIIIAIYVAAY 72
+ L PR YL RI+LP L+ S VL ++ + L G++ ++YL+ PIII + Y
Sbjct: 11 RVGLKPRDYLLRIVLPALITSIVLILLGFM------LFSGIILYIYLLLPIIILVSAIGY 64
Query: 73 PYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASD-PKLGAIAGEMKKVYMI 131
PY+A DS++ IN +L FIT F LS +++ R D+LK+L+ + +LG +A E +K+Y++
Sbjct: 65 PYIALDSQKNKINERLHIFITKFGTLSITDLNRKDLLKILSEEREELGELAKESEKLYVL 124
Query: 132 VDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFY 191
DK RSL EA RFLA+RTPS FADFLDRLAY+LDSG ELK++L +EQ VMDDY FY
Sbjct: 125 TDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLIKEQDIVMDDYAAFY 184
Query: 192 EGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFLILVAEIGSLMV 251
+ LY LD++KE+Y S + SI F AF I+ P + N +A F E+ ++V
Sbjct: 185 KRMLYSLDMYKELYVSAMTSIAFFLAFSILVPFLLPYNFVFMATIALFAFFAVELLIVVV 244
Query: 252 IKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIV--FLL---YFILIRPRFKLPTP 306
I+ R+P D +W T K+++ LIIS +LV I+ FLL Y + + P ++P
Sbjct: 245 IRNRLPFDRLWHTGEKPTETDIKLRKWLIISVILVVILLPFLLWAKYIVGLSPFSQMPYM 304
Query: 307 FVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLKYLSAHD 366
++AL TPLA G V KEE + RK+ FP F+RSL S+++ G ++ L+YLS HD
Sbjct: 305 ILVALGFTPLAIGGFVALKEEEKVKRKEFVFPDFLRSLGDSVSAKGGGMVSSLEYLSNHD 364
Query: 367 FGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEPDYVGKV 426
FG LT DI+ LY+RLA+ +D+ ++W F ++ S+LI +FS+IF + G +P ++
Sbjct: 365 FGPLTHDIKRLYKRLALGIDSNKSWRLFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEI 424
Query: 427 ISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQVPTEY 486
IS+NF ++V+LR+ + Q++ F+G++ GL G A +L AS VA IND++S +P E
Sbjct: 425 ISKNFRKIVQLRKSKYQNIQQFVGVVYGLGGGLALALFASLGVAKMINDLYSSLSIP-ET 483
Query: 487 IGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWVFAFG 546
+ I++I P S + +++ + +IV+S++SA+ IK+ DGG+ SL +FV +LW+ A
Sbjct: 484 VIHILNIAPISNVDVVEYIIFGSLIVYSIISAILIKIMDGGHKFVSLLHFVAILWICAIV 543
Query: 547 MYIGQTLMARFMSV 560
YI + ++++ + V
Sbjct: 544 AYITKLIVSQVLGV 557
>sp|O59649|FLAJ_METVO FLAGELLA ACCESSORY PROTEIN J >gi|3192885|gb|AAC19121.1| (AF068825)
flagella accessory protein [Methanococcus voltae]
Length = 558
Score = 360 bits (913), Expect = 3e-98
Identities = 193/540 (35%), Positives = 322/540 (58%), Gaps = 12/540 (2%)
Query: 9 ISIFVKADLDPRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIY 68
+ I + L P+ Y + +LP +L S LF+VV F + R LV +P+++
Sbjct: 3 LDILPRVGLKPKDYFLKFVLPAVLAS--LFMVVLGFIYFDGITRLLVL---ALPLLLLGG 57
Query: 69 VAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPK-LGAIAGEMKK 127
YPY+ DS++ IN +L +IT F VLS +++ +L++L+ + + LG +A E +K
Sbjct: 58 ALGYPYIELDSQKQKINERLHVYITKFGVLSITDLDNKALLELLSVEKEELGQLAEESRK 117
Query: 128 VYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDY 187
+Y++V + ++SL + RFLA RTPS F DFLDR+AYS+DSG ELK++L EQ VMD+Y
Sbjct: 118 IYVLVKRWNQSLAGSCRFLANRTPSSQFGDFLDRMAYSIDSGQELKEFLAGEQDIVMDEY 177
Query: 188 QTFYEGALYDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFLILVAEIG 247
FYE ALY LD FKE+Y S I S+ F F II P + + + F+ ++ E+
Sbjct: 178 AGFYERALYSLDNFKEMYVSAITSVSFFVTFAIIAPFLLPYDFVTMVTVAIFIFMIIEVI 237
Query: 248 SLMVIKYRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYF----ILIRPRF-K 302
+ IK ++P D +W T RK+++ LIIS L + ++ F I P+ K
Sbjct: 238 LIYSIKNKLPYDRLWHTGEKPTAIDRKLRKWLIISVGLTILASIVLFWGKYIYEAPQLLK 297
Query: 303 LPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLKYL 362
+P + ++++TPL G + ++EE+++ RK+ NFP F+RSL S+++ G L L YL
Sbjct: 298 IPYELIFSIAMTPLMLGGYMAQREESLVIRKENNFPDFLRSLGDSVSAKGGGTLESLGYL 357
Query: 363 SAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEPDY 422
+DFG LT+D+ +L+RRL++R++ ++W +F +T S+LI +FSE++ LG
Sbjct: 358 CTNDFGPLTKDLVALHRRLSIRINGQKSWKYFGHDTCSYLIQLFSEMYERCTYLGGNSGQ 417
Query: 423 VGKVISRNFERLVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQV 482
+I +NF +++RLRR + Q+V+ F G++ GL+G A +L AS+ VA +N ++S +
Sbjct: 418 ASHIIGKNFRKILRLRRSKYQNVNQFAGVMYGLSGGMALTLFASYGVASMVNGLYSSLDI 477
Query: 483 PTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWV 542
P + ++H++ PS + + +I+++L S+ IK+ DGG+ SL +F ++W+
Sbjct: 478 PDTML-SMVHVVAPSDFGFISYMMYGTLIIYALCSSYLIKLMDGGHYQVSLLHFSTMVWI 536
>emb|CAC11700.1| (AL445064) hypothetical membrane protein [Thermoplasma acidophilum]
Length = 551
Score = 339 bits (860), Expect = 5e-92
Identities = 176/521 (33%), Positives = 319/521 (60%), Gaps = 9/521 (1%)
Query: 31 LLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIYVAAYPYLAADSKRISINSKLPY 90
+ GS VL I+ + M + ++ ++++ + A + P + D+++ INS +P+
Sbjct: 23 IAGSAVLSIMFYLIYYMTK--KTVILLLFVMLALGAAFFFLKPIIDRDNRKNDINSNIPF 80
Query: 91 FITYFAVLSTSEIGRTDILKVLASDPKLGAIAGEMKKVYMIVDKLHRSLPEAFRFLAKRT 150
FIT F+ L+TS+ ++L +L+ KLG + E++K+ +V L EA F+AKRT
Sbjct: 81 FITAFSSLATSDANIIEVLDILSKKEKLGYLRKELEKILNLVRNWGMGLAEAMSFVAKRT 140
Query: 151 PSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDLDIFKEIYESIII 210
PS +F+DFL R +++DSG +++++ E + M ++T Y ALY D++++IY S+++
Sbjct: 141 PSDIFSDFLTRFGHAIDSGQDIQEFARTEVFSTMSSFETAYTSALYSFDLYRDIYVSLLL 200
Query: 211 SIVFAGAFMIIGPIITGQNIGRLALYLAFLILVAEIGSLMV---IKYRMPEDPIWAEKRV 267
S F F++I PI+ NI + L+ +L+ +G M+ I +P+DP+W + +
Sbjct: 201 SFAFLITFIMIMPILIPINI---TVVLSLSLLMVALGEFMLVYGISIVLPKDPLWHKTGI 257
Query: 268 ETPRHRKIKRALIISSMLVPIVFLLYFILIRPRFKLPTPFVIALSLTPLAYAGNVVRKEE 327
+T K++ +I+ + I+F++ + + +++P F A+ ++P+AY + K E
Sbjct: 258 KTDTDIKMRNLFLIAITISMILFIILDVT-KLMYRMPFYFTFAIMISPIAYPSYLGSKME 316
Query: 328 AMIFRKDENFPAFIRSLASSLASSGASLLLVLKYLSAHDFGTLTEDIRSLYRRLAVRVDT 387
+ +KDE + +FIRSL+ S ++ G L+ LK + HDFG L++DI LY+RL R+++
Sbjct: 317 REVQKKDEMYGSFIRSLSGSASAMGNLLIDALKAIVMHDFGILSKDINKLYKRLLYRINS 376
Query: 388 VRAWDFFIAETGSWLIGIFSEIFRESLRLGAEPDYVGKVISRNFERLVRLRRKRVQSVSN 447
++AW F A+TGS LI I+SE + ES+ LGA+ G V+S NFE++V LR+++ SV++
Sbjct: 377 LKAWKMFSADTGSHLIEIYSETYAESIDLGADALKSGMVVSENFEKIVGLRKRKHSSVTS 436
Query: 448 FIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQVPTEYIGEIIHIIPPSGMKLLDLSLL 507
F+GI+ G+T AFSLA SF + I+ IFS F + + I P S + L+++ L+
Sbjct: 437 FVGIMYGITAGLAFSLAISFGILKIIDGIFSGFNLSALGVTGIFLAPPSSSVYLIEIFLM 496
Query: 508 LIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWVFAFGMY 548
+I+ VHS + +++KV+DGG ++ L++ V+++W+ +F +Y
Sbjct: 497 IILFVHSFIGGISLKVSDGGRIVNGLHHTVLMIWIVSFVVY 537
>gb|AAG19375.1| (AE005032) flagella accessory protein J; FapJ [Halobacterium sp.
NRC-1]
Length = 581
Score = 280 bits (708), Expect = 4e-74
Identities = 155/518 (29%), Positives = 281/518 (53%), Gaps = 7/518 (1%)
Query: 31 LLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIYVAAYPYLAADSKRISINSKLPY 90
L+ + V F V V + LP L+ ++ ++ I YP + D +R + ++
Sbjct: 47 LVPAVVFFFVTIVAIVALSLPTYLLIPTPMLGLLALIAAVMYPKIRMDQRRTRMENRFHL 106
Query: 91 FITYFAVLSTSEIGRTDILKVLASDPKLGAIAGEMKKVYMIVDKLHRSLPEAFRFLAKRT 150
FIT+ VLST+ I R ++ + + ++ + G ++ E +++ ++D ++SL +A R A +
Sbjct: 107 FITHMTVLSTTNIDRVEVFRRIGAEEEYGPLSEEARRIVQLIDAWNQSLDDACRMRANKV 166
Query: 151 PSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDLDIFKEIYESIII 210
PS + ADFLDRLAY+++SG L+ YL EQ+ ++ +Y T YEG L ++++ K++Y S+++
Sbjct: 167 PSDLIADFLDRLAYTINSGESLESYLMSEQEAIIRNYATTYEGQLENIEVMKDLYLSMVL 226
Query: 211 SIVFAGAFMIIGPIITGQNIGRLALYLAFLILVAEIGSLMVIKYRMPEDPIWAEKRVETP 270
S+ FA F + PI++G + + L ++G L + P DP+W T
Sbjct: 227 SVTFALVFATVLPILSGTDPTMTVSAVVVLYTFIQVGFLYTMYTLAPSDPLWYFPEDRTT 286
Query: 271 RHRKIKRALIISSMLVPIVFLLYFILIRPRFK------LPTPFVIALSLTPLAYAGNVVR 324
R + + +V ++ I ++ + LP P A+ TPL G V R
Sbjct: 287 SVEWRMRVATAAGSVAAVVLVVVVIAVQLSWTPLAPDVLPLPMYAAVPTTPLLIPGLVAR 346
Query: 325 KEEAMIFRKDENFPAFIRSLASSLASSGASLLLVLKYLSAHDFGTLTEDIRSLYRRLAVR 384
EE + +D+ F +FIR+L SS + + VL+ L +FG LTE I LY+RL +R
Sbjct: 347 AEEGRVKDRDDAFTSFIRALGSSETARQTTTTRVLETLRDKNFGALTELIDDLYKRLNLR 406
Query: 385 VDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEPDYVGKVISRNFERLVRLRRKRVQS 444
+D +AW F A++ S+LI FSE++ ++G P ++G++IS N +++LR++R QS
Sbjct: 407 LDASQAWRHFTADSHSYLIQKFSEMYLIGRQMGGAPKHLGELISENMSEVLQLRQQRSQS 466
Query: 445 VSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQVPTEYIGEIIHIIPPSGMKLLDL 504
S +G++ G++ A F+ + I+ + F P +G II+ ++ +
Sbjct: 467 ASTLVGVLYGISAAATFAFFIGLGIVDVISGLGLDFSNPAFDVGSIIN-TEVYDIETIKY 525
Query: 505 SLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWV 542
L+L +++++ LS+L +V DGG+ + + +FV L W+
Sbjct: 526 LLVLTLLINASLSSLMTRVVDGGHKVNAYIHFVALTWI 563
>gi|11498653 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483079|pir||H69380 conserved hypothetical protein
AF1048 - Archaeoglobus fulgidus
>gi|2649538|gb|AAB90189.1| (AE001030) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 541
Score = 138 bits (344), Expect = 2e-31
Identities = 129/499 (25%), Positives = 230/499 (45%), Gaps = 44/499 (8%)
Query: 75 LAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLGAIAGEMKKVYMIVDK 134
L + K + +++ L + +TY A LST+ + R I +++ S+ K A + KV + K
Sbjct: 25 LRSRGKDLLMDNDLLFTLTYMASLSTANLSRDKIFEMV-SEKKEYAPSRYFSKVKDLTQK 83
Query: 135 LHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGA 194
H A +A++ +R+A ++ +G ++L +E + + YE
Sbjct: 84 WHYDYATACDLIAEKIKHERLKKLFNRMANAIAAGEPDNEFLEREWRAFKTIRKDEYERN 143
Query: 195 LYDLDIFKEIYESIIISIVFAGAFMIIGPII-TGQNIGRLALYLAFLILVAEIGSLMVIK 253
L L + + Y S+++S +++ II + + G AF + + ++
Sbjct: 144 LESLRKWSDAYTSLLVSASLISVVVLLSVIIYSAGDPGATLTASAFANFAISLFGVFMLF 203
Query: 254 YRMPEDPIWAEKRVETPRHRKIKRALIISSMLVPIVFL-LYFILIRPRFK---------L 303
+P+D + ++++ I R ++ ML+PI F + F+ + P L
Sbjct: 204 KAVPKDKKVHDLKIKSKEQTAISR---LAPMLIPIAFFAVLFLTVLPTLLNFTGGGLGIL 260
Query: 304 PTP------FVIA-LSLTPLAYAGNVVRKEEAMIFRKDENFPAFIRSLASSLASSGASLL 356
P F++A L L P+ Y + R ++ I ++DE F AFIRSL + + +G S+
Sbjct: 261 PKADYRGVGFLLAGLVLLPVGY---LARIDDQKISKRDEAFTAFIRSLGAIKSGAGVSVA 317
Query: 357 LVLKYLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRL 416
L + + G L E + LYRRL++ +D +W+ F+ E+GS+LI + IF ++ L
Sbjct: 318 EALSRIDQKNLGELRELVMQLYRRLSMGLDAKLSWERFVGESGSYLISKLTAIFVDATDL 377
Query: 417 GAEPDYVGKVISRNFERLVRLRRKRVQSVSNFIGII----LGLTGAFAF----------- 461
G + D VG+++S + +V LR KR S FI +I L + G F
Sbjct: 378 GGDADVVGEIVSSSNLEMVLLRLKRDLISSGFINLIIPLHLAMVGLVLFITQILAIFSDY 437
Query: 462 --SLAASFQVAVAINDIFSKFQVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVHSLLSAL 519
+L AS V+ ++FSK +P G I I LL+ + I++ ++ + L
Sbjct: 438 ISNLFASQLGGVSTGEVFSK--IPGGMQGLNIGIFSGIPTDLLNQYSVWIILSLTIANTL 495
Query: 520 AIKVADGGNLLGSLYYFVI 538
A V GG LYY I
Sbjct: 496 AANVVKGGGRYLYLYYGAI 514
>pir||G72576 hypothetical protein APE1895 - Aeropyrum pernix (strain K1)
>gi|5105587|dbj|BAA80900.1| (AP000062) 537aa long
hypothetical protein [Aeropyrum pernix]
Length = 537
Score = 132 bits (328), Expect = 1e-29
Identities = 130/516 (25%), Positives = 240/516 (46%), Gaps = 29/516 (5%)
Query: 48 IPLPRGLVFFM-----YLIPIIIAIYVA---AYPYLAADSKRISINSKLPYFITYFAVLS 99
+P+ G+ M YL I+I + A A YL A SK ++++L Y + + +++
Sbjct: 8 LPVAGGVALLMEPPTSYLTAIVIMLTFAGLQAMLYLMA-SKIHVLDAELLYILLHMRLVA 66
Query: 100 TSEIGRTDILKVLASDPKL-GAIAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADF 158
+ + I + +A P++ G + + +Y + + S P+A +A + +
Sbjct: 67 SGKPPVGRIFRAIADFPQVYGGYSRLFRSIYDLGKEWGYSFPKAVSIIADSVEGEILRNI 126
Query: 159 LDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDLDIFKEIYESIIISIVF-AGA 217
L RL+ L G +++++ +E +T++ +Y+ Y + + IY +++ S+VF
Sbjct: 127 LQRLSGVLAVGEDVEEFFEREYRTLLAEYENVYTRTMNSARVLLGIYVTMLGSLVFLVST 186
Query: 218 FMIIGPIITGQNIGRLALYLAF-LILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIK 276
FM++ G LYL++ + V I +++ + ++P E R++ +K
Sbjct: 187 FMVLAFFFGGDT---RILYLSYAAVTVGAILLGLLVFMSLKQEPFEYRGNPEILRYKLLK 243
Query: 277 RALIISSMLVPIVFLLYFILIRPRFKLP-TPFVIALSLTPLAY--AGNVVRKEEAMIFRK 333
A + + + + +I R L T V+A + L G + R EE+ +
Sbjct: 244 AA---GGLAIALGAAVGAGIIYMRGGLDFTGLVLAYAAAGLLLLPVGVIARMEESKVRNV 300
Query: 334 DENFPAFIRSLASSLASSGASLLLVLKYLSAHDFGTLTEDIRSLYRRLAVRVDTVRAWDF 393
DE FP FIRS S L++ G +++ L+ L + G L I+ LY RL ++ AWD
Sbjct: 301 DEFFPVFIRSYGSHLSTVG-NMVKALEPLLISNLGILMGPIKRLYTRLKNSINPNVAWDL 359
Query: 394 FIAETGSWLIGIFSEIFRESLRLGAEPDYVGKVISRNFERLVRLRRKRVQSVSNFIGIIL 453
F AETGS + IF +++ G PD G +IS + + RLR+ R Q S F +
Sbjct: 360 FSAETGSEMARRGIIIFTDTVEAGGNPDLAGALISDHHNDMNRLRKLRYQVASTFSSTLF 419
Query: 454 GLTGAFAFSLAASFQVAVAINDIFSKFQVPTEYIGEIIHIIPPSGMKLLDLSLLLIMIVH 513
+ GA L ++ ++I Q+ T+ EI I P M + L +L ++ V
Sbjct: 420 IMHGAAIIILLIMSKLLELFSNILQ--QLTTQLPPEIASIFPFRSMDVSLLPILNLIFVT 477
Query: 514 SLL---SALAIKVADGGNLLGSLYYFVILLWVFAFG 546
+L+ SA+ +V G S Y+++ L + + G
Sbjct: 478 TLVIVNSAVVTRVTPGSKT--SFYFYLALYLLLSAG 511
>gb|AAK42470.1| Flagella-related protein J, putative (FlaJ) [Sulfolobus
solfataricus]
Length = 473
Score = 102 bits (252), Expect = 1e-20
Identities = 104/476 (21%), Positives = 212/476 (43%), Gaps = 35/476 (7%)
Query: 79 SKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKLGAIAGEMKKVYMIVDKLHRS 138
S + ++SK + + + L +S + ++ L+ + KK+ +V
Sbjct: 6 SAKNEVDSKYIFMLAFMLALFSSGVPPEIVILHLSREDSFEPYTKVFKKIRNLVSGYRYK 65
Query: 139 LPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGALYDL 198
A + K R +FL RL+ ++ G ++ ++L +E + +Y + + +
Sbjct: 66 FSSAITYSIKNLNIRFLKEFLIRLSQAVTFGDDMIEFLSREIDFTLSEYNAYSARLIESM 125
Query: 199 DIFKEIYESIIISIVFAGA-FMIIGPIITGQNIGRLALYLAFLILVAEIGSLMVIKYRMP 257
+ F IY ++ S+ F A I+ I +G + L + L L+ + +M + YR P
Sbjct: 126 NNFLTIYATLNSSLTFLVADITILSLIYSGGTTLIIQLTILSLALLGNLTLVMYLLYR-P 184
Query: 258 EDPIWAEKRVETPRHRKIKRALIISSMLVPIVFLLYFILIRPRFKLPTPFVIALSL-TPL 316
E+ I R+ I + ++ ++ + I+F + + T +++ + L
Sbjct: 185 ENYI---------RYNVIDKFVLTFTISLSIIFSVIY----------TSYIVLMGTGIVL 225
Query: 317 AYAGNVVRKEEAMIFRKDENFPAFIRSLASSLA---SSGASLLLVLKYLSAHDFGTLTED 373
G R E I R + +F FIR + + A + SL+ VL+ D G +
Sbjct: 226 LGIGLRYRLYENKINRIERHFLLFIRYFSRNYAIVSNLKESLMAVLR----GDLGDVRPL 281
Query: 374 IRSLYRRLAVRVDTVRAWDFFIAETGSWLIGIFSEIFRESLRLGAEPDYVGKVISRNFER 433
IR RL +D + + E+GS L+ + S++ E++ +G +G+++S+ +
Sbjct: 282 IRRSLNRLNFGIDKEKIFRLIGDESGSILVSMLSKVLYETISMGGNAMIIGEILSKIGDS 341
Query: 434 LVRLRRKRVQSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQVPTEYIGEIIHI 493
++ +R ++ Q+ F I L A A AA + +N+IFS V T + ++I
Sbjct: 342 VLNIRSRKEQNGRAFETSIYALQTASAGVSAALISIVGMLNNIFSTQNVSTVFSFSEVNI 401
Query: 494 IPPSGMKLLDLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWVFAFGMYI 549
++ L+I+++ S + +AI +A G +L SLY+ IL+ + + +I
Sbjct: 402 ------DIISRIFLIILLILSFANGIAITLAYGKSLYVSLYFIGILIILSSISYHI 451
>gi|11498266 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483039|pir||B69332 conserved hypothetical protein
AF0658 - Archaeoglobus fulgidus
>gi|2649961|gb|AAB90583.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 614
Score = 80.4 bits (195), Expect = 5e-14
Identities = 82/406 (20%), Positives = 178/406 (43%), Gaps = 57/406 (14%)
Query: 27 LLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIYVAA----------YPYLA 76
++PG+L F++ V++ +I + ++ + + +I V A YP+
Sbjct: 55 VIPGILLGFLVSEVINPGGPLIIRNTVIPYWQFELALITGFAVLAFGFTRYLILSYPFYI 114
Query: 77 ADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPKL-GAIAGEMKKVYMIVDKL 135
+ +R I+S LP+ + ++ + I + +A + ++ G I+ E K+ +V+
Sbjct: 115 TNVRRGKIDSSLPHAVNMMLGMAKGGVPLISIFRFVAENREIFGEISREFDKIVTLVEIF 174
Query: 136 HRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGAL 195
+ A +++A TPS FL+ + G ++ +YL + + ++ + +T+Y
Sbjct: 175 GYDMITAMKYVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFF 234
Query: 196 YDLDIFKEIYESIIISIVFAGAFMIIGPIITGQNIGRLALYLAFLILVAEIGSLM---VI 252
L ++ EIY + + IV F+I+ + G + + L + +GSL+ +I
Sbjct: 235 ETLQVYAEIY--LALFIVAPLFFLIVLVVFQMVGSGAMQTFKIVLFAMIPLGSLLLMWLI 292
Query: 253 KYRMPEDPI-WAEKRVETPR------------------HRKIKRAL-------------- 279
K MP +P+ +AE + R ++K+ L
Sbjct: 293 KSSMPSEPVGFAEHKKRGDRDIYFRIADREPGFKIYVWRMRLKKVLNFLKRPFTEEPYLL 352
Query: 280 ----IISSMLVPIVFLLYFILIRPRFKLPTPFVIALSLTPLAYAGNVVRKEEAMIFRKDE 335
+ ++VP V + FI + + L + LS+ L + + + ++ + ++
Sbjct: 353 TLRALSFYLIVPAVAV--FIYLYGKVDLDLLIFVTLSMVILP-SILFIEYKNRLLTKMEK 409
Query: 336 NFPAFIRSLASSLASSGASLLLVLKYLSAHDFGTLTEDIRSLYRRL 381
P F++ LA SL +G +++ L++LS + G L +IR + R +
Sbjct: 410 ELPEFMKQLA-SLNEAGLNVVEALRHLSESELGVLGREIRKIKREV 454
>sp|Q58682|YC86_METJA HYPOTHETICAL PROTEIN MJ1286 >gi|2128764|pir||E64460 hypothetical
protein MJ1286 - Methanococcus jannaschii
>gi|1591923|gb|AAB99288.1| (U67569) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 595
Score = 72.6 bits (175), Expect = 1e-11
Identities = 110/590 (18%), Positives = 248/590 (41%), Gaps = 72/590 (12%)
Query: 1 MIKVPQEKIS-IFVKADLDP--RTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFF 57
+ K+ EK I +KA ++ TYL + L ++ ++FI+ + + GL+
Sbjct: 37 LFKIEDEKFDEILLKAGMNAVSSTYLPVVFLTSIILGLIIFIIFLIVFNIFYAIFGLIGG 96
Query: 58 MYLIPIIIAIYVAAYPYLAADSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLASDPK 117
++++ +I +Y PY+ A+ K SI+ LPY + + LS++ I +I L+ +
Sbjct: 97 IFIVILIGVLY----PYVLAEEKAKSIDENLPYAFAFISALSSANIPVVEIFTSLSKEDI 152
Query: 118 LGAIAGEMKKVYMIVDKLHRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLF 177
G ++ E K++ + + F A+ TPS+ + + SL G E+K+
Sbjct: 153 YGGMSKEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSSVYYNIVASLIVGAEMKNIFH 212
Query: 178 QEQQTVMDDYQTFYEGALYDLDIFKEIYE--------SIIISIVFAGAFMII---GPIIT 226
+ + +M+D + A+ ++I E Y +++++ A + I +
Sbjct: 213 EIYERLMEDRKLELFEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAILQTASLFG 272
Query: 227 GQNIGRLALYL----AFLILVAEIGSLMVIKYRMPEDPIWAEKRVETPRHRKIKRAL--- 279
+ L YL A +I + + ++ +++ + K + P IK
Sbjct: 273 DPKLLPLTFYLWVPIASIIFMGLVYGILPKDFKLNVSLLDVLKEFDEPEIEGIKMKFKWK 332
Query: 280 ------IISSMLVPIVFLLYFILIRPRFKL-PTPFV------IALSLTPLAYAGNVVRKE 326
+ ML I F+L+FI + FK T F+ + L +Y ++ +
Sbjct: 333 PVHFITLFFWMLSIISFMLFFIR-KSIFKFHGTDFLMFGILFLILPFILTSYWHFIIENQ 391
Query: 327 EAMIFRKDENFPAFIRSLASSLASSGASLLLVLKYLSAHDFGTLTEDIRSLYRRLAVRVD 386
K+ +P F+ L ++ SG ++ ++ + ++G LT+ + +++A+++
Sbjct: 392 ------KERYYPIFLNDLTMAV-RSGMDIIRAMQVCARTNYGPLTK----IVKKMAIQMS 440
Query: 387 TVRAWDFFIAE----TGSWLIGIFSEIFRESLRLGAEPDYVGKVISRNFERLVRLRRKRV 442
R + A+ S + + I +E G + + ++ + +L + KR
Sbjct: 441 WGRPVNEVFADLERTEKSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEM--KRE 498
Query: 443 QSVSNFIGIILGLTGAFAFSLAASFQVAVAINDIFSKFQVPTEYIGEIIHIIPPSGMKLL 502
S FI +++ + SF + + + I +PT ++ I ++
Sbjct: 499 ISARQFIYVVV---------IYLSFFLYIGTSYIMVHSLLPT-----LLKNIHGLSVEFY 544
Query: 503 DLSLLLIMIVHSLLSALAIKVADGGNLLGSLYYFVILLWV--FAFGMYIG 550
L ++++S+ S ++ + +++ + + +++L V F YIG
Sbjct: 545 KNYLFQGILIYSIFSGASLGILTERSIIAGIKHILLMLIVGYMLFKFYIG 594
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.146 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192085008
Number of Sequences: 2977
Number of extensions: 7717267
Number of successful extensions: 26348
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 26320
Number of HSP's gapped (non-prelim): 11
length of query: 572
length of database: 189,106,746
effective HSP length: 55
effective length of query: 517
effective length of database: 156,189,961
effective search space: 80750209837
effective search space used: 80750209837
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)