BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1388 (PAB1388) DE:Hypothetical protein
         (642 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75062 hypothetical protein PAB1388 - Pyrococcus abyssi (st...  1272  0.0
pir||D71170 hypothetical protein PH0560 - Pyrococcus horikoshii ...   785  0.0

>pir||A75062 hypothetical protein PAB1388 - Pyrococcus abyssi (strain Orsay)
           >gi|5458903|emb|CAB50390.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 642
           
 Score = 1272 bits (3255), Expect = 0.0
 Identities = 642/642 (100%), Positives = 642/642 (100%)

Query: 1   MRKGIALLVMILILPLVSASTYTGWLGIGEEISYGDYAIIPKDGNFDGEALLMVSTPSRT 60
           MRKGIALLVMILILPLVSASTYTGWLGIGEEISYGDYAIIPKDGNFDGEALLMVSTPSRT
Sbjct: 1   MRKGIALLVMILILPLVSASTYTGWLGIGEEISYGDYAIIPKDGNFDGEALLMVSTPSRT 60

Query: 61  SYISLRPGDEKDVGNVKVKLVKMFLGKKPMFYLNVTLPPLLVNQSIVVGGYKVLVKDVKV 120
           SYISLRPGDEKDVGNVKVKLVKMFLGKKPMFYLNVTLPPLLVNQSIVVGGYKVLVKDVKV
Sbjct: 61  SYISLRPGDEKDVGNVKVKLVKMFLGKKPMFYLNVTLPPLLVNQSIVVGGYKVLVKDVKV 120

Query: 121 DSYEVVVSNGTGGKSYTKPFQLNGYSFSITPRPKVFSGELKLLSNVTYGDYKLTLAGLNM 180
           DSYEVVVSNGTGGKSYTKPFQLNGYSFSITPRPKVFSGELKLLSNVTYGDYKLTLAGLNM
Sbjct: 121 DSYEVVVSNGTGGKSYTKPFQLNGYSFSITPRPKVFSGELKLLSNVTYGDYKLTLAGLNM 180

Query: 181 TIVNNKSKSILNIEFEGKDYYIDEGDYGYVGPFIVKYNGFRCEMQGNLCDPIISLEVYLR 240
           TIVNNKSKSILNIEFEGKDYYIDEGDYGYVGPFIVKYNGFRCEMQGNLCDPIISLEVYLR
Sbjct: 181 TIVNNKSKSILNIEFEGKDYYIDEGDYGYVGPFIVKYNGFRCEMQGNLCDPIISLEVYLR 240

Query: 241 ALDISISYDPSKDFWVYEGKAFRVGDLVVKVKGIADGAAYIGIENNCGNELHSGVLRASQ 300
           ALDISISYDPSKDFWVYEGKAFRVGDLVVKVKGIADGAAYIGIENNCGNELHSGVLRASQ
Sbjct: 241 ALDISISYDPSKDFWVYEGKAFRVGDLVVKVKGIADGAAYIGIENNCGNELHSGVLRASQ 300

Query: 301 DVIGALEYDGLRLGLLETSQDNNGKKAHFIAFYTERKKPQYLAYLNVTVSAPREVTMLTP 360
           DVIGALEYDGLRLGLLETSQDNNGKKAHFIAFYTERKKPQYLAYLNVTVSAPREVTMLTP
Sbjct: 301 DVIGALEYDGLRLGLLETSQDNNGKKAHFIAFYTERKKPQYLAYLNVTVSAPREVTMLTP 360

Query: 361 FTVNVSVKNEGTSEVLGMIAKFEPGNGFKVLRDEVYIKSLAPGKSEVLKFTLVPLKPGNL 420
           FTVNVSVKNEGTSEVLGMIAKFEPGNGFKVLRDEVYIKSLAPGKSEVLKFTLVPLKPGNL
Sbjct: 361 FTVNVSVKNEGTSEVLGMIAKFEPGNGFKVLRDEVYIKSLAPGKSEVLKFTLVPLKPGNL 420

Query: 421 TVGRLVVEGPVPYPLACGGLSLISFTSNSPIVNVKAINVTVGVSYLNVTRIGEPFEVNFV 480
           TVGRLVVEGPVPYPLACGGLSLISFTSNSPIVNVKAINVTVGVSYLNVTRIGEPFEVNFV
Sbjct: 421 TVGRLVVEGPVPYPLACGGLSLISFTSNSPIVNVKAINVTVGVSYLNVTRIGEPFEVNFV 480

Query: 481 VDPPIGNITMALPSGVGLLSEGSLHSGVVTVPASVKSIKLVVVSPGNYTIPLYLEAYGVK 540
           VDPPIGNITMALPSGVGLLSEGSLHSGVVTVPASVKSIKLVVVSPGNYTIPLYLEAYGVK
Sbjct: 481 VDPPIGNITMALPSGVGLLSEGSLHSGVVTVPASVKSIKLVVVSPGNYTIPLYLEAYGVK 540

Query: 541 LYSSKISFEAVGSSQAVTVTKTKTETKTITLTNGTARTLTVTETKTEVKTETQVKTLTKH 600
           LYSSKISFEAVGSSQAVTVTKTKTETKTITLTNGTARTLTVTETKTEVKTETQVKTLTKH
Sbjct: 541 LYSSKISFEAVGSSQAVTVTKTKTETKTITLTNGTARTLTVTETKTEVKTETQVKTLTKH 600

Query: 601 STTTVTKTIEVKSGKSNLLVFLFGVILGAGVIILLAWIKARS 642
           STTTVTKTIEVKSGKSNLLVFLFGVILGAGVIILLAWIKARS
Sbjct: 601 STTTVTKTIEVKSGKSNLLVFLFGVILGAGVIILLAWIKARS 642


>pir||D71170 hypothetical protein PH0560 - Pyrococcus horikoshii
           >gi|3256966|dbj|BAA29649.1| (AP000002) 641aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 641
           
 Score =  785 bits (2005), Expect = 0.0
 Identities = 390/646 (60%), Positives = 498/646 (76%), Gaps = 10/646 (1%)

Query: 1   MRKGIALLVMILILPLVSASTYTGWLGIGEEISYGDYAIIPKDGNFDGEALLMVSTPSRT 60
           MRK + L++++L+LP VSAST+ GW  +GE +SYGD AI+ +D   DGE L+ +STPS  
Sbjct: 1   MRK-LILVLILLMLPGVSASTFVGWANLGESVSYGDNAIVVRDVGVDGEVLIALSTPSGV 59

Query: 61  SYISLRPGDEKDVGNVKVKLVKMFLGKKPMFYLNVTLPPLLVNQSIVVGGYKVLVKDVKV 120
           SY+SL+PG+E+ VG+VKVK+ K+FLG+ PM YLNVT PP L+NQSI VG Y + VKDV V
Sbjct: 60  SYLSLKPGEEEKVGDVKVKVEKVFLGENPMVYLNVTFPPALINQSIKVGRYVIRVKDVTV 119

Query: 121 DSYEVVVSNGTGGKSYTKPFQLNGYSFSITPRPKVFSGELKLLSNVTYGDYKLTLAGLNM 180
           DS+EV VSNGTG K Y   F++ GY   ITPRP++FSGELKLL NVTYGDYK+TL+GLNM
Sbjct: 120 DSFEVTVSNGTGEKVYKDSFEVGGYKVVITPRPEIFSGELKLLDNVTYGDYKITLSGLNM 179

Query: 181 TIVNNKSKSILNIEFEGKDYYIDEGDYGYVGPFIVKYNGFRCEMQGNLCDPIISLEVYLR 240
           T+VNNKS SIL+++FEGKDY+++EG Y YVGPFIVKYNGFRCEM+GNLCDP+ISL V LR
Sbjct: 180 TVVNNKSSSILDVKFEGKDYWVEEGKYAYVGPFIVKYNGFRCEMKGNLCDPVISLAVLLR 239

Query: 241 ALDISISYDPSKDFWVYEGKAFRVGDLVVKVKGIADGAAYIGIENNCGNELHSGVLRASQ 300
            +++SI+YDPSK FW+YEGK F VG L+VK++G+ADG +YI I NNCG+EL+SG LRA+ 
Sbjct: 240 GVNVSIAYDPSKVFWLYEGKGFTVGPLIVKLEGLADGVSYIVISNNCGDELYSGTLRANP 299

Query: 301 DVIGALEYDGLRLGLLETSQDNNGKKAHFIAFYTERKKPQYLAYLNVTVSAPREVTMLTP 360
            V+ ++EYDG++LGLLET +D NGKK  FIAFY E +KP+YLAYLNVTV AP  VT+L+P
Sbjct: 300 TVVDSIEYDGIKLGLLETDEDKNGKKGLFIAFYNESEKPRYLAYLNVTVKAPERVTLLSP 359

Query: 361 FTVNVSVKNEGTSEVLGMIAKFEPGNGFKVL-RDEVYIKSLAPGKSEVLKFTLVPLKPGN 419
           F V VSV NEG S V+GM+AKF PG+G KV+ RD VYI SL PGKS  L FTL+P K G 
Sbjct: 360 FKVRVSVMNEGNSRVMGMLAKFNPGDGVKVIGRDSVYISSLDPGKSVELSFTLLPTKEGK 419

Query: 420 LTVGRLVVEGPVPYPLACGGLSLISFTSNSPIVNVKAINVTVGVSYLNVTRIGEPFEVNF 479
           + VG++ VEGPVPYPLACGGLS++ F+SNSP+V V+ +N+ V +SY     +G PFEVN 
Sbjct: 420 VNVGKVTVEGPVPYPLACGGLSMLKFSSNSPVVEVEPLNIGVNISYPVSVSLGVPFEVNV 479

Query: 480 VVDPPI-GNITMALPSGVGLLSEGSLHSGVVTVPASVKSIKLVVVSPGNYTIPLYLEAYG 538
            +   I GN+T+ LP G+GLLSEG + +G V +PA   SIKLV V+PGNYT+P+ L ++G
Sbjct: 480 TLSHNIEGNLTLNLPPGIGLLSEGRVSAGSVVLPARNASIKLVAVTPGNYTVPVTLASHG 539

Query: 539 VKLYSSKISFEAVGSSQAVTVTKTKTETKTITLTNG--TARTLTVTETKTEVKTETQVKT 596
           VKLY+S ISFE  G ++A  V  T T TK IT T    + +T+TV++ +T  KT T  KT
Sbjct: 540 VKLYNSTISFEVQGENEAPAVAVT-TITKVITKTEEKVSEKTITVSKNETITKTITMTKT 598

Query: 597 LTKHSTTTVTKTIEVKSGKSNLLVFLFGVILGAGVIILLAWIKARS 642
           + K  T+ +TKT+  K     LL+F+ GVILG G+IIL+AWIKARS
Sbjct: 599 MVK--TSEITKTVVGKG--RELLMFILGVILGIGIIILVAWIKARS 640


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238977455
Number of Sequences: 2977
Number of extensions: 10452322
Number of successful extensions: 30983
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30936
Number of HSP's gapped (non-prelim): 2
length of query: 642
length of database: 189,106,746
effective HSP length: 59
effective length of query: 583
effective length of database: 153,796,013
effective search space: 89663075579
effective search space used: 89663075579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 168 (69.9 bits)