BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1389 (fdhA) DE:ALPHA SUBUNIT OF FORMATE DEHYDROGENEASE
(686 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyro... 1411 0.0
pir||E75124 formate dehydrogenase alpha chain related protein PA... 514 e-144
gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum] 512 e-144
pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 508 e-143
pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ135... 490 e-137
gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moo... 466 e-130
emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha... 434 e-120
sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907... 411 e-113
pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 406 e-112
pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 405 e-111
gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sul... 404 e-111
pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Met... 390 e-107
emb|CAC11567.1| (AL445064) formate dehydrogenase related protein... 384 e-105
sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SU... 377 e-103
sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-L... 367 e-100
gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [E... 367 e-100
pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragme... 363 3e-99
gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli] 363 4e-99
pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Col... 363 5e-99
gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha s... 362 8e-99
gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate d... 354 2e-96
pir||E69850 formate dehydrogenase homolog yjgC - Bacillus subtil... 349 5e-95
dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catal... 344 2e-93
pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From D... 340 4e-92
sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 338 1e-91
gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydr... 337 3e-91
emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase a... 337 3e-91
pir||A83424 assimilatory nitrate reductase PA1779 [imported] - P... 328 1e-88
gb|AAF74559.1|AF203789_1 (AF203789) assimilatory nitrate reducta... 323 4e-87
sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 n... 322 7e-87
pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtil... 321 2e-86
gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus ... 321 2e-86
pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir... 319 5e-86
gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechoco... 311 2e-83
gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sul... 307 2e-82
sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 ni... 302 7e-81
gb|AAB40292.1| (L49163) narB [Anabaena PCC7120] 302 9e-81
pir||T35003 probable respiratory chain oxidoreductase - Streptom... 300 5e-80
pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquif... 280 4e-74
gi|11498802 molybdopterin oxidoreductase, molybdopterin binding ... 272 1e-71
dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [... 268 1e-70
emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coel... 257 2e-67
gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsie... 256 5e-67
gb|AAD46689.1|AF040988_4 (AF040988) periplasmic nitrate reductas... 252 7e-66
gb|AAC79443.1| (AF083948) periplasmic nitrate reductase large su... 252 7e-66
sp|Q56350|NAPA_PARDT PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 243 4e-63
pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinel... 236 6e-61
emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyce... 234 2e-60
gb|AAC23522.1| (AF069545) periplasmic nitrate reductase precurso... 230 4e-59
pir||F83499 periplasmic nitrate reductase protein NapA PA1174 [i... 227 4e-58
pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large ch... 227 4e-58
pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - V... 220 3e-56
sp|Q53176|NAPA_RHOSH PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 216 6e-55
emb|CAB73932.1| (AL139078) putative formate dehydrogenase large ... 214 3e-54
pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtil... 208 1e-52
sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SU... 202 1e-50
pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii ... 199 6e-50
pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus ... 196 9e-49
pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodura... 193 5e-48
pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A pre... 193 6e-48
sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 193 6e-48
gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductas... 187 4e-46
sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173... 183 4e-45
gb|AAA16399.1| (U00008) yojC [Escherichia coli] 180 6e-44
dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4... 178 1e-43
sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 178 1e-43
sp|P39185|NAPA_ALCEU PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 178 2e-43
emb|CAB92217.1| (AL356592) nitrate reductase (fragment). [Strept... 176 9e-43
pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 pr... 175 2e-42
sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN... 175 2e-42
pir||B69076 catalytic subunit of nitrate reductase (flp) - Metha... 169 9e-41
emb|CAB76275.1| (AL158057) putative oxidoreductase. [Streptomyce... 168 2e-40
pir||D83205 probable oxidoreductase PA3534 [imported] - Pseudomo... 164 2e-39
pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 pr... 164 3e-39
sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS RE... 163 5e-39
dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halod... 163 7e-39
sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 161 2e-38
sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J ... 160 6e-38
gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A ... 159 1e-37
emb|CAA06231.1| (AJ004933) periplasmic nitrate reductase, large ... 158 2e-37
emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidi... 154 3e-36
pir||G81444 molybdopterin-containing oxidoreductase Cj0264c [imp... 154 3e-36
sp|P56914|NUG2_RHIME NADH DEHYDROGENASE I CHAIN G 2 (NADH-UBIQUI... 153 6e-36
pir||B49847 nitrate reductase (EC 1.7.99.4) nasA - Klebsiella pn... 148 1e-34
gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Hal... 148 2e-34
pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buf... 147 3e-34
pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - S... 147 3e-34
pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rh... 147 4e-34
sp|Q06457|NASA_KLEPN NITRATE REDUCTASE 147 4e-34
gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphae... 146 7e-34
pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus W... 145 1e-33
sp|P32176|FDOG_ECOLI FORMATE DEHYDROGENASE-O, MAJOR SUBUNIT (FOR... 145 2e-33
dbj|BAB06249.1| (AP001515) formate dehydrogenase alpha chain [Ba... 145 2e-33
sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 143 5e-33
pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaero... 143 5e-33
emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxi... 143 6e-33
pdb|1DMS| Structure Of Dmso Reductase 143 6e-33
sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 142 1e-32
sp|P24183|FDNG_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, M... 141 3e-32
pir||S66263 dimethyl sulfoxide reductase - Rhodobacter sphaeroid... 140 5e-32
prf||2117158A DMSO reductase [Rhodobacter sphaeroides] 139 1e-31
gb|AAC13660.1| (U25037) dimethyl sulfoxide reductase [Rhodobacte... 138 2e-31
pir||I40449 hypothetical protein 6 (replication origin region) -... 137 4e-31
pir||T36812 probable dehydrogenase - Streptomyces coelicolor >gi... 137 5e-31
dbj|BAA15123.1| (D90788) Formate dehydrogenase, nitrate-inducibl... 136 6e-31
pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escheric... 136 6e-31
sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE... 136 6e-31
gi|11499961 molybdopterin oxidoreductase, molybdopterin binding ... 136 8e-31
emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter a... 135 1e-30
gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Esche... 134 4e-30
gb|AAD13456.1| (AE000464) formate dehydrogenase-O, major subunit... 132 1e-29
pir||B83307 probable molybdopterin oxidoreductase PA2714 [import... 130 5e-29
pir||B70838 hypothetical protein Rv0197 - Mycobacterium tubercul... 130 6e-29
gb|AAD13438.1| (AE000244) formate dehydrogenase-N, nitrate-induc... 128 2e-28
gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin bindi... 127 4e-28
pir||G70389 formate dehydrogenase (EC 1.2.1.2) alpha chain - Aqu... 127 4e-28
pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibri... 126 9e-28
sp|P46448|FDXG_HAEIN FORMATE DEHYDROGENASE MAJOR SUBUNIT (FORMAT... 123 8e-27
emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [She... 122 1e-26
pir||G82168 trimethylamine-N-oxide reductase VC1692 [imported] -... 121 3e-26
gb|AAB03027.1| (L19201) formate dehydrogenase-O alpha subunit [E... 120 7e-26
sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR ... 118 2e-25
gb|AAC07107.1| (AE000720) formate dehydrogenase alpha subunit [A... 115 1e-24
pir||D81349 nitrate reductase (EC 1.7.99.4), periplasmic Cj0780 ... 114 3e-24
pir||T35749 probable formate dehydrogenase - Streptomyces coelic... 112 2e-23
sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) ... 110 4e-23
gi|11497793 molybdopterin oxidoreductase, molybdopterin binding ... 109 1e-22
pir||H64903 hypothetical protein b1501 - Escherichia coli >gi|17... 108 2e-22
dbj|BAA15182.1| (D90793) Formate dehydrogenase a chain (EC 1.2.1... 108 2e-22
pir||E70916 probable bisC protein - Mycobacterium tuberculosis (... 108 2e-22
gb|AAC44462.1| (U60056) CbbBc [Ralstonia eutropha] 105 1e-21
gb|AAD39508.1| (AF146729) formate dehydrogenase H [Salmonella ty... 102 1e-20
pir||A82998 probable oxidoreductase PA5181 [imported] - Pseudomo... 102 1e-20
gb|AAG31648.1|AF314590_2 (AF314590) periplasmic nitrate reductas... 101 3e-20
sp|Q10821|YT00_MYCTU HYPOTHETICAL 84.6 KDA PROTEIN RV2900C >gi|7... 99 1e-19
pir||E70406 DMSO reductase chain A - Aquifex aeolicus >gi|298367... 96 1e-18
emb|CAB53372.1| (AJ007744) selenate reductase A [Thauera selenatis] 95 3e-18
sp|Q60314|FDHA_METJA PUTATIVE FORMATE DEHYDROGENASE ALPHA CHAIN ... 92 2e-17
emb|CAB89111.1| (AJ277440) nitrate reductase subunit 1 [Haloarcu... 70 9e-11
>pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyrococcus abyssi
(strain Orsay) >gi|5458896|emb|CAB50383.1| (AJ248287)
ALPHA SUBUNIT OF FORMATE DEHYDROGENEASE [Pyrococcus
abyssi]
Length = 686
Score = 1411 bits (3613), Expect = 0.0
Identities = 686/686 (100%), Positives = 686/686 (100%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD
Sbjct: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL
Sbjct: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT
Sbjct: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE
Sbjct: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG
Sbjct: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
Query: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN 360
INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN
Sbjct: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN 360
Query: 361 EETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK 420
EETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK
Sbjct: 361 EETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK 420
Query: 421 RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEI 480
RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEI
Sbjct: 421 RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEI 480
Query: 481 IVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETP 540
IVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETP
Sbjct: 481 IVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETP 540
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKR 600
RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKR
Sbjct: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKR 600
Query: 601 WPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLT 660
WPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLT
Sbjct: 601 WPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLT 660
Query: 661 KDDAIDEFSKMPELKTAACRISKVEG 686
KDDAIDEFSKMPELKTAACRISKVEG
Sbjct: 661 KDDAIDEFSKMPELKTAACRISKVEG 686
>pir||E75124 formate dehydrogenase alpha chain related protein PAB2442 -
Pyrococcus abyssi (strain Orsay)
>gi|5458221|emb|CAB49710.1| (AJ248285) FORMATE
DEHYDROGENASE ALPHA SUBUNIT related protein [Pyrococcus
abyssi]
Length = 665
Score = 514 bits (1310), Expect = e-144
Identities = 293/689 (42%), Positives = 421/689 (60%), Gaps = 31/689 (4%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
+ +++I VVCP+C GC L I P+ ++ PN+GKLCPKG+ + + + D
Sbjct: 3 IGDRVIRVVCPYCGFGCNLLID-----PKTLKVKPYKGEPNRGKLCPKGLHALEFVLSKD 57
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL+ PLK+VG F I W++AI IA K +EI E +GP A+AF+ S + S E+NYL
Sbjct: 58 RLRYPLKKVGSD----FVRIGWDDAIREIASKLREIKERYGPNAIAFIASSKVSNEENYL 113
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
LQK+AR LGTNN++ RLC ++ A G QTNP+ D+ K I+IWGYNPA T
Sbjct: 114 LQKIARLLGTNNIDNCARLCHEASVHALKMTLGAGVQTNPYSDLENFKAIMIWGYNPAET 173
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
+PV+ Y A GAK+IV+D +T T + A L PGTD+ +A A+++VII E
Sbjct: 174 HPVVM-DYILNA-KRKGAKIIVIDVRETTTMRLADYKLMINPGTDITLANALMNVIISEG 231
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
LYDK+FV R F + AV+KYTPE+AEK++G+ A LI E A FA G+ ++ G
Sbjct: 232 LYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEAKLIREVAREFAKAGSGAIMWGMG 291
Query: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIP--GAHCGLCAAVPGVNCAQLPGPVP 358
+ QH +G +A+ ++ + G +G +G G+ P G + AA G LPG VP
Sbjct: 292 LTQHVSGVENVIAVIDMALLLGYVGDKG---GLYPMRGQNNVQGAAYMGALSEFLPGYVP 348
Query: 359 LNEET-AKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIE 416
L + T K+ + LWG E +P++ GL+ ++DA+LEG++K +YIMG+NPA S AN K+
Sbjct: 349 LTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVKALYIMGENPAVSEANVLKVR 408
Query: 417 EAL-KRAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK 475
+AL K +VV D+F T T ++A +LPAAA+ EK G+ + RR+ SF+ PPGEAK
Sbjct: 409 KALQKLELLVVQDLFLTRTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGEAK 468
Query: 476 PDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDE 535
PDWEI+ +L K + L F Y V+D+ E + P L G + E L KN G + P
Sbjct: 469 PDWEILSLLGKELDL-PGFPYEKVEDITEEYFKMFPELAGISVEEL-KNSNGIIIP---- 522
Query: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
RL F T GKA LI VE P E P+ EYP LT R++ ++TG M+ R+
Sbjct: 523 ---YKRLHTIRFQTPDGKARLIAVEQIMPWEQPNGEYPLILTTVRVMSHYNTGEMTMRSP 579
Query: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG 655
SL K P V I+E DAK+ GI+ GDLV+VETRRGS+V +A++++ ++EGV+ +P+H+
Sbjct: 580 SLVKLMSEPVVYISESDAKKYGIKDGDLVKVETRRGSIVLKAKISK-VKEGVIVVPFHFD 638
Query: 656 FNYLTKDDAIDEFSKMPELKTAACRISKV 684
N LT +DA+++ + PELK ++ RI K+
Sbjct: 639 ANILT-NDALNK-AGTPELKYSSARIRKI 665
>gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum]
Length = 681
Score = 512 bits (1305), Expect = e-144
Identities = 297/691 (42%), Positives = 407/691 (57%), Gaps = 18/691 (2%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
M + IP VCP+C GC L +V++DG +E + N+GKLCPKG SYQ D
Sbjct: 1 MKLEYIPTVCPYCGCGCGLNVVTIDGKVEGVE-PWKRHPLNEGKLCPKGNFSYQFVGRDD 59
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL KPL K G+F E SW+EA +IA K +E P++LAFL S RC+ E+NYL
Sbjct: 60 RLTKPLI----KENGEFREASWDEATSLIASKLEEY-RGEDPDSLAFLASARCTNEENYL 114
Query: 121 LQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAA 179
LQK ARA +GT NV+ RLC + +K FG A TN DI +S I I G N A
Sbjct: 115 LQKFARAVIGTQNVDHCARLCHGPSVAGLAKTFGSGAMTNSISDIEESSCIFIIGSNTAE 174
Query: 180 TNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKE 239
+P+++ + NGAKLIV DP + TAK A I+L PGTD+ + AM++VII+E
Sbjct: 175 QHPLIWRRVLRAKA--NGAKLIVADPRVSPTAKMADIYLPFKPGTDVPLMNAMMNVIIEE 232
Query: 240 ELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNE 299
L D++F+ +R +F+ L V+ Y PE AEKI+ PA I EAA+ +A +A ++
Sbjct: 233 GLEDREFIEKRTKDFEKLKETVKNYKPEEAEKITLTPADKIREAAIEYAKADSAAILFAM 292
Query: 300 GINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL 359
GI QH G+ ++ +NL +TGN+GK G + G + A G A PG +
Sbjct: 293 GITQHITGTDNVVSTANLAMLTGNVGKRGAGVNPLRGQNNVQGACDMGALPAFYPGYQKV 352
Query: 360 NEETA-KKFSELWG-FEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEE 417
EE A +K S WG ++ PGL + +A EGK+K +YIMG+NP S + ++E
Sbjct: 353 IEEDATEKMSCAWGCSDLKCTPGLTVVEMMNAAAEGKLKAMYIMGENPMVSDPDIQHVKE 412
Query: 418 ALKR-AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKP 476
+L+ F+VV DIF TET + AD+VLPA+AW EK GT + RRV +A PGEAK
Sbjct: 413 SLENLEFLVVQDIFLTETAELADVVLPASAWSEKNGTYTSTERRVQYIRKAADAPGEAKD 472
Query: 477 DWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDE- 535
DW+II +A +G + F +SS +D+ EI V P G PERL K EG +PCPDE
Sbjct: 473 DWQIICEIANKMG-ADGFKFSSAEDIFEEIREVTPQYAGMNPERLVKP-EGLHWPCPDET 530
Query: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
+ TP L + F T G PVE++ P E PD EYPF LT R++ +HTGTM+ R++
Sbjct: 531 HPGTPILHTEQFATPDGLGIFFPVEYREPAETPDSEYPFILTTGRIIFHYHTGTMTRRSE 590
Query: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHW- 654
+L + P +V IN+ DA LGI++GD+V+V+TRRG + A VT I +GV+ +P+H+
Sbjct: 591 TLDREVPTGFVEINDEDALELGIKNGDMVKVKTRRGEIEITARVTPEIMKGVLFIPFHFA 650
Query: 655 --GFNYLTKDDAIDEFSKMPELKTAACRISK 683
N LT D +D +KMPELK +A ISK
Sbjct: 651 ECAANMLTSADELDPEAKMPELKVSAASISK 681
>pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Pyrococcus horikoshii >gi|3257776|dbj|BAA30459.1|
(AP000006) 679aa long hypothetical formate dehydrogenase
[Pyrococcus horikoshii]
Length = 679
Score = 508 bits (1294), Expect = e-143
Identities = 288/685 (42%), Positives = 422/685 (61%), Gaps = 32/685 (4%)
Query: 6 IPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKP 65
+ VVCP+C GC L I P+ P PN+GKLCPKG+ + +H DRLK P
Sbjct: 9 VRVVCPYCGFGCNLLID-----PKSRRVKPYPGEPNRGKLCPKGLYALEHVFSKDRLKHP 63
Query: 66 LKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
LK+ GE F ISWE+AI I+ K KEI+E +GP ++AF+ S + + E+NYL+QK+A
Sbjct: 64 LKKEGES----FRRISWEKAISEISTKLKEIIEDYGPGSIAFIASSKVTNEENYLIQKIA 119
Query: 126 RALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
R LGTNNV+ RLC S+ A G QTNP+ D+ + I+IWGYNPA T+PV+
Sbjct: 120 RLLGTNNVDNCARLCHESSVHALKLTLGDGVQTNPYSDLERFGAIMIWGYNPAETHPVVM 179
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
QY A G K+IV+D +T T ++A L PGTD+ +A A+++VII+ LY+K+
Sbjct: 180 -QYILGA-KRRGGKIIVIDIRETLTMRFADYRLVIKPGTDITLANAIMNVIIEGNLYNKE 237
Query: 246 FVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHA 305
FV R F + V+KYTPE+AEK++GVPA LI E A +FA G+ ++ GI Q
Sbjct: 238 FVESRTTGFSEIRMGVKKYTPEYAEKVTGVPAELIREVAEVFAKAGSGAIMWGMGITQQI 297
Query: 306 NGSITAMAISNLIAITGNIGKEGVFSGVIP--GAHCGLCAAVPGVNCAQLPGPVPLNE-E 362
+G +A+ ++ + G G++G G+ P G + AA G LPG +PL++ +
Sbjct: 298 SGVENVLALVDIALLLGYFGEKG---GLYPMRGQNNVQGAAYMGTLSEFLPGYIPLSDSK 354
Query: 363 TAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-K 420
+K +++WG E +P++ G + +DA+L+G +K +YI+G+NPA S AN+ K+ +AL K
Sbjct: 355 FRRKVAKMWGVEDLPTERGFYLTEYWDAILKGDLKALYIVGENPAVSDANALKVRKALTK 414
Query: 421 RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEI 480
+VV D+F T+T ++A +LPAAA+ EK G+ + RR+ SF+ PPGE+KPDWEI
Sbjct: 415 LDLLVVQDLFLTKTARFAHYILPAAAFCEKEGSYMNSERRIQWSFKVCDPPGESKPDWEI 474
Query: 481 IVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETP 540
+VMLA+++GL + F+YS V+D+ RE + PAL+ + E L G + P P
Sbjct: 475 LVMLARALGL-KGFDYSKVEDITREYFKLFPALRNRSIEEL--KARGIIIP-------AP 524
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKR 600
RL++ F T GKA + VE P E P+ EYP LT RL+ ++TG M+ R+ SL K
Sbjct: 525 RLYVDSFNTHDGKARFVAVEQIMPWEEPNGEYPLILTTVRLINHYNTGEMTRRSPSLAKM 584
Query: 601 WPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLT 660
V I+ DA+ GI GD V VETRRGSL +A++ + I++GV+A+P+H+ N LT
Sbjct: 585 SGESVVFISREDAREYGIEDGDYVIVETRRGSLRLKAKIAK-IQKGVIAIPFHFDANLLT 643
Query: 661 KDDAIDEFSKMPELKTAACRISKVE 685
+DA+++ + PE K +A RI K+E
Sbjct: 644 -NDALNK-AGTPEFKFSAARIRKIE 666
>pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ1351 [similarity]
- Methanococcus jannaschii
Length = 686
Score = 490 bits (1247), Expect = e-137
Identities = 295/696 (42%), Positives = 407/696 (58%), Gaps = 35/696 (5%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHP 59
M K++ +CP+C VGC L +V DG R I N + P N+GKLC KG YQ
Sbjct: 14 MEFKIVNTICPYCGVGCGLGLVVKDG--RVIGIHPNKRHPINEGKLCAKGNYCYQFIHSK 71
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNY 119
DRL KPL K E F E +W +A+E+IA+ K + G F S RC+ EDNY
Sbjct: 72 DRLTKPLI----KKESGFVETTWNKALEVIAENLKTYKDEIG-----FFSSARCTNEDNY 122
Query: 120 LLQKLAR-ALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPA 178
+LQK AR AL TNN++ RLC S+ S FG A TN +DI + ILI G N
Sbjct: 123 ILQKFARVALKTNNIDHCARLCHSATVTGMSACFGSGAMTNSIEDIELADCILIIGSNTF 182
Query: 179 ATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIK 238
+P++ + D GAK+IV+DP +T TAK + I+LQ PGT++A+ AM++VIIK
Sbjct: 183 EQHPLIARRIMRAK--DKGAKIIVIDPRRTITAKNSDIYLQIIPGTNVALINAMINVIIK 240
Query: 239 EELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLN 298
E L DK+F+ R F+ L ++KYTPE+A KI GV LI E+A ++ A+++
Sbjct: 241 ENLIDKEFIKNRTEGFEKLKEIIKKYTPEYASKICGVDKELIIESAKIYGNAERASIIYC 300
Query: 299 EGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQLP 354
G+ Q +G A+ NL ITGNIGKEG + G + G C A+P V P
Sbjct: 301 MGVTQFTHGVDAVKALCNLAMITGNIGKEGTGVNPLRGQNNVQGACDMGALPNV----FP 356
Query: 355 GPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGK-IKGIYIMGQNPARSLANSS 413
G + E+ K F E W ++ GL + D GK IK +YIMG+NP S +
Sbjct: 357 GYQKV-EDGYKLFEEYWKTDLNPNSGLTIPEMIDE--SGKNIKFLYIMGENPIVSDPDVK 413
Query: 414 KIEEALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPG 472
+E+ALK F+VV DIF TET K AD+VLPAA W EK GT RRV +AV PPG
Sbjct: 414 HVEKALKSLDFLVVQDIFLTETAKLADVVLPAACWAEKDGTFTNTERRVQLIRKAVNPPG 473
Query: 473 EAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPC 532
EA DW II LA+ +G G+ FNY+ V+D+ EI V P +G T +RL ++G +PC
Sbjct: 474 EALEDWIIIKKLAEKLGYGDKFNYNKVEDIFNEIRKVTPQYRGITYKRL--KIDGIHWPC 531
Query: 533 PDENTETPRLFLKG-FPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMS 591
DEN ++ K F T +G+ ++ PVE++ E+PD++YPF LT R++ +HTGTM+
Sbjct: 532 LDENHSGTKILHKDKFLTDNGRGKIFPVEYREVAELPDKDYPFILTTGRIIFHYHTGTMT 591
Query: 592 NRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
R K+L + P++ IN DAK L I +GDLV+V +RRG + A+A +TE+I++GVV MP
Sbjct: 592 RRCKNLVEEINEPFIEINPDDAKSLKIENGDLVKVISRRGEITAKARITEDIKKGVVFMP 651
Query: 652 WHW---GFNYLTKDDAIDEFSKMPELKTAACRISKV 684
+H+ N LT + A+DE K+PELK A +I ++
Sbjct: 652 FHFVEANPNVLT-NTALDELCKIPELKVCAVKIERI 686
>gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moorella
thermoacetica]
Length = 893
Score = 466 bits (1187), Expect = e-130
Identities = 280/686 (40%), Positives = 405/686 (58%), Gaps = 31/686 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K + +C +C VGC L + DG K+ NP+ N G LC KG + + +PDR+
Sbjct: 222 KKVRSICSYCGVGCNLTLYVKDGKVVKVRGYENPEV-NNGWLCVKGRFGFDYIHNPDRIT 280
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
+PL R G++ +G F E SWEEA+ ++++K +I S+G EAL FL S +C+ E+NYLLQK
Sbjct: 281 RPLIREGDREKGYFREASWEEALALVSQKLTQIKGSYGSEALGFLCSAKCTNEENYLLQK 340
Query: 124 LARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
LAR LGTNNV+ RL SS + FG A TN DI + I + G N +P
Sbjct: 341 LARGVLGTNNVDHCARLXHSSTVAGLATTFGSGAMTNSIADIASADCIFVIGSNTTENHP 400
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
V+ + K + GA+LIV DP + E ++++ L+ PGTDLA+ +LHVIIKEELY
Sbjct: 401 VIALKV--KEAVRRGARLIVADPRRIELVNFSYLWLRQKPGTDLALLNGLLHVIIKEELY 458
Query: 243 DKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGIN 302
DK+F+A+R F+AL AVE+YTP +++GVPA I EAA +A G ++T++ GI
Sbjct: 459 DKEFIAQRTEGFEALKLAVEEYTPAKVSEVTGVPAGDIIEAARTYARGPSSTILYAMGIT 518
Query: 303 QHANGSITAMAISNLIAITGNIGKEGVFSGVIP----GAHCGLC--AAVPGVNCAQLPGP 356
QH G+ MA++NL G +GKEG +GV P G C +P V LPG
Sbjct: 519 QHITGTANVMALANLAMACGQVGKEG--NGVNPLRGQSNVQGACDMGGLPNV----LPGY 572
Query: 357 VPLNEETAK-KFSELWGF-EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSK 414
P+ + + KFSE WG ++P +PGL + A EGK+KG+YI+G+NP + + S
Sbjct: 573 QPVTDPGVRHKFSETWGVPDLPGEPGLTLMEMMAAAQEGKLKGMYILGENPVLTDPDVSH 632
Query: 415 IEEALKR-AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGE 473
++EALK F+VV DIF TET + AD+VLP A++ EK GT + RRV +A++PPGE
Sbjct: 633 VKEALKNLEFLVVQDIFLTETARMADVVLPGASFAEKEGTFTSTERRVQLLHKAIEPPGE 692
Query: 474 AKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCP 533
A+PDW I+ L +G YSS ++++EI + P+ G T ERL +G +P
Sbjct: 693 ARPDWLILNDLLLLMGYPR--KYSSPGEIMQEIAGLTPSYAGITYERLED--KGLQWPVL 748
Query: 534 D-ENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSN 592
E+ TP L + F G+ ++ V ++PP E PDEEYPF T R + +HT +S
Sbjct: 749 SLEHPGTPVLHREKFSRGYGQFQV--VHYRPPAEEPDEEYPFLFTTGRNLYHYHT-VISR 805
Query: 593 RTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPW 652
+++ L++ P P V IN+ DA RLGIR G+++ + +RRG + +A VT+ I G V M +
Sbjct: 806 KSRGLEEMCPAPVVEINDNDAARLGIREGEMIEIVSRRGKVRVKALVTDRIPRGQVFMNF 865
Query: 653 HW---GFNYLTKDDAIDEFSKMPELK 675
H+ N LT A+D +K+P +K
Sbjct: 866 HFHEAAANLLT-IAALDPVAKIPIIK 890
>emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha subunit
[Thermoplasma acidophilum]
Length = 702
Score = 434 bits (1105), Expect = e-120
Identities = 249/681 (36%), Positives = 378/681 (54%), Gaps = 26/681 (3%)
Query: 9 VCPWCSVGCRLYI-VSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLK 67
VCP+C GC++ + S D Y Y N+GKLC KG + DR+ P+
Sbjct: 38 VCPYCGTGCQIEVDYSGDHYT---VHGYTRSAVNEGKLCIKGYQGLSYASSHDRITSPML 94
Query: 68 RVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA 127
R G+ + ++SW+EAI+ + K+ KEI + +GP+A+AF S +C+ E+NYLLQK+AR
Sbjct: 95 RSGDT----WVKVSWDEAIDYVVKRLKEIRDRYGPDAIAFQASAKCTNEENYLLQKIARM 150
Query: 128 LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQ 187
+GTNNV+ R C SS + G A T + ++ + G N +P++
Sbjct: 151 IGTNNVDHCARSCHSSTVAGLIRTLGTAAATGSIKSLKSTQTFFVIGSNTTEQHPIIGTT 210
Query: 188 YFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFV 247
++ G KLIV DP +T+ A A + LQ PG+D+A+ +M+ VI+K L D +F+
Sbjct: 211 IIKQK--KAGKKLIVADPRRTKLASIADVFLQFKPGSDVALLNSMMFVILKRGLIDSEFI 268
Query: 248 AERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANG 307
R F+A A +EKY PE E+I+GVP L+ +AA ++A+ + ++ GI QH +G
Sbjct: 269 KSRTEGFEAFAEEIEKYPPELTEQITGVPPDLVEKAAEIYASNRPSAILYGMGITQHIHG 328
Query: 308 SITAMAISNLIAITGNIGKEGVFSGVIP--GAHCGLCAAVPGVNCAQLPGPVPLNEETAK 365
+ M++SNL +TGN+G+ G SG+ P G + ++ G PG VP + +
Sbjct: 329 TENVMSVSNLALMTGNLGRYG--SGIFPLRGQNNVQGSSDMGALSEFYPGYVPPDSPGVE 386
Query: 366 KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR-AFV 424
KF +W ++P K GL +FDA ++G++K IY+MG+NP + AN S +E LK
Sbjct: 387 KFERIWEAKLPRKVGLMLSEMFDAAIDGRVKAIYLMGENPVITEANLSDVERGLKNLELF 446
Query: 425 VVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVML 484
VV DIF T+T +YA ++LPA + EK GT RR+ R PPG+A+PDW I+ +
Sbjct: 447 VVQDIFMTDTARYAHVILPATSALEKEGTFTNTERRIQRVVPVKDPPGDARPDWWILSQI 506
Query: 485 AKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPR-LF 543
I E Y S +D+ EI IP G L +G +P D++ E L
Sbjct: 507 YSKIFDRE--AYRSPEDIFNEIRLAIPNYSGVRYSDLYP--DGKQWPINDQHPEGAEILH 562
Query: 544 LKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPG 603
+ F G+ IP +K P E PDEEYPF LT R +H+GTM+ R++ L++ P
Sbjct: 563 VDKFARGLGRFMAIP--YKSPSESPDEEYPFILTTGRNYYHWHSGTMTRRSEILERESPN 620
Query: 604 PYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHW---GFNYLT 660
PYV I+ DAK+L IR+G + +E+R GS+ A VT I +G+V +P+H+ N L
Sbjct: 621 PYVEISVNDAKKLSIRNGQTITIESRHGSIKLPAMVTSKIPDGIVFVPFHFKEARVNLLV 680
Query: 661 KDDAIDEFSKMPELKTAACRI 681
++ +D +SK+PE K A ++
Sbjct: 681 GEN-LDPYSKIPEFKVVAVKV 700
>sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907|pir||A24698 formate
dehydrogenase (EC 1.2.1.2) chain A - Methanobacterium
formicicum >gi|149708|gb|AAA72182.1| (J02581) formate
dehydrogenase A (fdhA) [Methanobacterium formicicum]
Length = 684
Score = 411 bits (1045), Expect = e-113
Identities = 259/692 (37%), Positives = 372/692 (53%), Gaps = 22/692 (3%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K +P +CP+C VGC + +V D +E + N+GKLCPKG Y+ DRL
Sbjct: 4 KYVPTICPYCGVGCGMNLVVKDEKVVGVE-PWKRHPVNEGKLCPKGNFCYEIIHREDRLT 62
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
PL K G+F E +W+EA ++IA K L ++ P + F R E+ Y+ QK
Sbjct: 63 TPLI----KENGEFREATWDEAYDLIASK----LGAYDPNEIGFFCCARSPNENIYVNQK 114
Query: 124 LAR-ALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
AR +GT+N++ RLC + FG A TN + + +I G N +P
Sbjct: 115 FARIVVGTHNIDHCARLCHGPTVAGLAASFGSGAMTNSYASFEDADLIFSIGANSLEAHP 174
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
L G+ +A + NGA IV DP T TAK A ++ GTD+A+ AM++VII E L
Sbjct: 175 -LVGRKLMRAKM-NGAYFIVADPRYTPTAKQADQYIPFKTGTDVALMNAMMNVIISEGLE 232
Query: 243 DKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGIN 302
DK+F+ +R N++ L V KYTPE AE+I+ VPA +I + A+ +A A +V + GI
Sbjct: 233 DKEFIEKRTKNYEELKEVVSKYTPEMAEEITQVPADVIRDIAIKYAKADKAAIVYSLGIT 292
Query: 303 QHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-NE 361
+H++G M +NL +TGNIG+ G + G + A G PG + ++
Sbjct: 293 EHSHGVDNVMQTANLAMLTGNIGRLGTGVNPLRGQNNVQGACDMGALPTDYPGYRKVADQ 352
Query: 362 ETAKKFSELWG-FEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK 420
E + + WG ++ +PGL + DA +G +K +YI G++P S ++ +EEAL
Sbjct: 353 EVMEDVTCTWGCSDLGCEPGLKIPEMIDAAAKGDLKVLYITGEDPVISDPDTHHVEEALN 412
Query: 421 RA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWE 479
F VV DIF T+T ++AD+VLPAA W E+ GT RRV +AV PGE+K DWE
Sbjct: 413 NLDFFVVQDIFMTDTAEFADVVLPAACWAEQEGTFTNGERRVQLIRKAVDAPGESKYDWE 472
Query: 480 IIVMLAKSIGLG-EYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDE-NT 537
I LAK +G E F Y S D+ E+ V P G ERL + E +PCP E +
Sbjct: 473 IFCDLAKKMGADPEMFTYESAQDIFEEVRTVTPQYAGMNRERLDRP-EALHWPCPSEDHP 531
Query: 538 ETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSL 597
T + ++ F G +P+E + P E PD+EYP LT RL+ +H M+ R +L
Sbjct: 532 GTAMMHIEKFAHPDGLGIFMPLEEQGPMETPDDEYPLILTTTRLLFHYH-AAMTRRAATL 590
Query: 598 KKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHW--- 654
+ P YV IN DA LGI + + V+V++RRG + A VT++I +G+V +P H+
Sbjct: 591 DREVPTGYVEINTEDAAELGIANKEKVKVKSRRGEIEIAARVTDDIVKGIVNIPMHFREC 650
Query: 655 GFNYLTKDDAIDEFSKMPELKTAACRISKVEG 686
N LT AID S MPE K A ISK+EG
Sbjct: 651 SANILTNAAAIDPKSGMPEYKACAVAISKMEG 682
>pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622673|gb|AAB86026.1| (AE000915) formate
dehydrogenase, alpha subunit homolog [Methanobacterium
thermoautotrophicum]
Length = 865
Score = 406 bits (1031), Expect = e-112
Identities = 257/687 (37%), Positives = 381/687 (55%), Gaps = 28/687 (4%)
Query: 6 IPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKK 64
+ VCP+C GC +Y+ V G R + +P P N+GKLC KG + + P+RLKK
Sbjct: 200 VKTVCPYCGAGCGIYL-GVRG-DRVVSSRGDPDNPVNRGKLCVKGRFALKFVNSPERLKK 257
Query: 65 PLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKL 124
PL +V +G+F E+ W+EA+ +A++ E + E A + S +C+ E+NY+LQK
Sbjct: 258 PLIKV----DGRFVEVEWDEALSTVAERLSE----YSGEEFAAVASAKCTNEENYILQKF 309
Query: 125 ARALG-TNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPV 183
RA+ + N++ RLC + + + S G A TN ++ S IL G NP T+P+
Sbjct: 310 TRAVMLSGNIDHCARLCHAPSVRSLSMTLGSGAMTNSIAELEDSACILAVGTNPTETHPL 369
Query: 184 LFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
Y + +GAKL+V+DP +T ++ A IHLQ PG+D+ + +AM II+E L+D
Sbjct: 370 T--AYSVIRAIRSGAKLVVIDPRRTRISELADIHLQNRPGSDIPLIMAMCRFIIEEGLHD 427
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
+F+ R NFD AV E E ++GV + AA+ +A+ A+++ + GI Q
Sbjct: 428 TEFIESRTENFDEFRDAVMALDLEEVESLTGVGVEDMRRAAITYASKKPASIIYSMGITQ 487
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEET 363
HA+G+ +A+SNL +TGN+GK + G + A G LPG L++
Sbjct: 488 HAHGTDNVIALSNLALLTGNLGKPSAGINPLRGQNNVQGACDMGALPDLLPGYQTLDD-- 545
Query: 364 AKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA- 422
+ +FS+ WG +P PG+ +FDA LEG+++ +YIMG+NP S + K +AL+
Sbjct: 546 SFRFSDKWGSTIPG-PGMTLPEMFDAALEGRLRAMYIMGENPLLSEPETEKTRKALESLD 604
Query: 423 FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIV 482
F+VV DIF TET + AD+VLPA AW EK GT RRV +A+ PGEA+ DWEII
Sbjct: 605 FLVVQDIFMTETAELADVVLPACAWAEKDGTFTNTERRVQLIRKALDAPGEARTDWEIIC 664
Query: 483 MLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPD-ENTETPR 541
MLA+ +G E F+Y+S ++ +EI ++P+ G + ERL G +PC E+ T
Sbjct: 665 MLAEKMG-AEGFDYASSSEIFKEIAALVPSYAGISHERLQDG--GIQWPCTSYEHGGTQY 721
Query: 542 LFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRW 601
L + F T +G+A + + GEV EEYP L R + Q+HT +M+ R L
Sbjct: 722 LHSERFSTPTGRASFL-LPGYHVGEV-SEEYPMVLVTGRNLYQYHTRSMTGRVPELDSFS 779
Query: 602 PGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG---FNY 658
++IN DA +LG+ G V V++ GSL RA V+ ++ EGVV M +H+ N
Sbjct: 780 DREELLINPLDAAKLGVEDGGTVLVKSEGGSLEVRARVSGDVMEGVVFMTFHFAETPANV 839
Query: 659 LTKDDAIDEFSKMPELKTAACRISKVE 685
LT D D S MPELK I VE
Sbjct: 840 LTGGDR-DPVSGMPELKFTPVSIRPVE 865
>pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Marburg)
>gi|2127681|pir||S63554 formate dehydrogenease alpha
chain - Methanobacterium thermoautotrophicum
>gi|871456|emb|CAA61208.1| (X87969) putative alpha
subunit of formate dehydrogenease [Methanobacterium
thermoautotrophicum]
Length = 887
Score = 405 bits (1029), Expect = e-111
Identities = 259/687 (37%), Positives = 382/687 (54%), Gaps = 27/687 (3%)
Query: 6 IPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKK 64
+ VCP+C GC +Y+ V G R + P +P N+G+LC KG + + P+RLKK
Sbjct: 219 VRTVCPYCGAGCEIYL-GVRGN-RVVSSRGVPDSPVNQGRLCVKGRFALKFVNSPERLKK 276
Query: 65 PLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKL 124
PL +V +G+F E+ W+EAI ++A++ E + E A + S +C+ E+NYLLQK
Sbjct: 277 PLIKV----DGEFVEVEWDEAISVVAERLSE----YTGEEFAAVASAKCTNEENYLLQKF 328
Query: 125 ARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPV 183
RA +G+ N++ RLC + + G A TN ++ + IL G NP T+PV
Sbjct: 329 TRAVMGSGNIDHCARLCHAPSLTGLRMSLGSGAMTNSISELGAAGCILAVGTNPTETHPV 388
Query: 184 LFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
Y L + A+L+VVDP KT ++ A IHLQ PG+D+ + +AM I++E L+D
Sbjct: 389 T--SYRVIRALRSRARLVVVDPRKTRLSELADIHLQNRPGSDIPLLMAMCRFILEEGLHD 446
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
+F+ R F+ AV + E+I+GV I AA+++A+ A+++ + GI Q
Sbjct: 447 SEFIDSRTEKFEDFRDAVMALDLDEVERITGVNVKDIRRAAIMYASNSPASIIYSMGITQ 506
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEET 363
H NG+ +A+SNL +TGNIG + + G + A G LPG + E
Sbjct: 507 HVNGTGNVLALSNLALLTGNIGIKSAGINPLRGQNNVQGACDMGALPDLLPGYQGIG-EA 565
Query: 364 AKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK-RA 422
A KFSE WG +P GL +FDA +GKI+ +YIMG+NP S + + EAL+
Sbjct: 566 AGKFSEKWGSPIP-PAGLTLPEMFDAARDGKIRCMYIMGENPLLSEPDIERTREALEGLE 624
Query: 423 FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIV 482
F+VV DI TET + AD+VLPAA++ EK GT RRV +A+ PG+A PDW+II
Sbjct: 625 FLVVQDICLTETAELADVVLPAASFAEKDGTFTNTERRVQLLRKALDAPGDALPDWQIIS 684
Query: 483 MLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPC-PDENTETPR 541
M+A +G E F+Y S + EI ++P+ G + ERL G +PC +E+ T
Sbjct: 685 MIAGRMG-REDFDYESASRIFDEIRELVPSYAGISHERLKSG--GIQWPCTSEEDAGTGY 741
Query: 542 LFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRW 601
L + FPT +G+A + +++ G VP EEYP L R + Q+HT +M+ R + L+
Sbjct: 742 LHSEEFPTPTGRASFLLPDYQFRG-VP-EEYPLVLVTGRNLYQYHTRSMTARVEELESFS 799
Query: 602 PGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG---FNY 658
+++N DA +GIR GD V V + RGSL RA VT+ + EGVV M +H+ N
Sbjct: 800 DHEELLMNPADASSMGIREGDTVEVTSERGSLRVRAGVTDEVMEGVVFMTFHFADAPANV 859
Query: 659 LTKDDAIDEFSKMPELKTAACRISKVE 685
LT D D FS MP LK R+ +V+
Sbjct: 860 LTGGDR-DPFSGMPGLKFTPVRVCRVQ 885
>gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
solfataricus]
Length = 979
Score = 404 bits (1028), Expect = e-111
Identities = 247/694 (35%), Positives = 385/694 (54%), Gaps = 26/694 (3%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKL-CPKGVSSYQHYVHPDRL 62
K VC +C VGC I + KIE P++P G L C KG + +R+
Sbjct: 258 KKTKTVCIYCGVGCSFEIWTKGRKILKIE--PKPESPANGILTCVKGKFGWDFVNSSERI 315
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
KPL R G+K F E SW+EAI IAK+ KEI E +GP+++ F+ S++ S E+ YLLQ
Sbjct: 316 TKPLIREGDK----FREASWDEAISYIAKRLKEIKERYGPDSIGFIASDKMSNEEAYLLQ 371
Query: 123 KLARAL-GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
KLARA+ GTNNV+ + R CQS V + G A + DI + +I+I G+N ++
Sbjct: 372 KLARAIIGTNNVDNSARYCQSPATVGLWRTVGIGADSGTIRDIENANLIVIVGHNTTESH 431
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
PV+ G ++A NG+K++V+D K E A+ A + ++P PGTD A+ + +I +
Sbjct: 432 PVI-GSKVKRAKKINGSKIVVIDVRKHEIAEKADLFIKPKPGTDAAVLAGVAKYLIDQGW 490
Query: 242 YDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGI 301
DK+F+ +RVN F+ +++ +T ++ E I+GVP I + A + + V+ G+
Sbjct: 491 IDKEFIDKRVNGFEEFKESIKGFTLDYVEDITGVPRDQIIKLAEMIHNANSVAVLWGMGV 550
Query: 302 NQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCA--QLPGPVPL 359
QH G+ T+ IS+L+ ITGN GK G SG P V C LPG L
Sbjct: 551 TQHLGGADTSTIISDLLLITGNYGKPG--SGAFPMRGHNNVQGVSDFGCLPNYLPGYQKL 608
Query: 360 NEETA-KKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEA 418
+E KF E WG ++ PGL + + +LEGKI +YI+G++ + +A
Sbjct: 609 EDENVIAKFEEAWGVKLNRNPGLQIPQMIEGVLEGKIHALYIVGEDTVMVDCGTPLTRQA 668
Query: 419 LKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD 477
L++ F+VV D+F TET K AD++LPAAA EK GT + RR+ R ++A++P G++KPD
Sbjct: 669 LEKVDFLVVQDMFITETAKLADVILPAAASLEKDGTFVNTERRIQRFYKAMEPIGDSKPD 728
Query: 478 WEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENT 537
WEII M+A ++G +N+ + +++ EI + P G RL + ++P ++ +
Sbjct: 729 WEIIQMVANALGANWSYNHPA--EIMNEIAKLGPIFAGVNYSRL-EGFNSLLWPVNEDGS 785
Query: 538 ETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSL 597
+TP L+ F TK GKA L P+ WKPP E+ DE + + R++ FH G M+ R + L
Sbjct: 786 DTPLLYTNAFATKDGKAILYPLSWKPP-ELKDEVHKVTVNTGRVLEHFHVGNMTRRVEGL 844
Query: 598 KKRWPGPYVMINERDAKRLGIRSGDLVRVETR-RGSLVARAEVTENIREGVVAMPWH--- 653
+++ P +V +++ A + I++GDLV V+++ G + ARA V++ + + +P +
Sbjct: 845 RRKVPETFVEVSKELASKYSIKNGDLVLVKSKFGGEIKARAIVSDRVEGEEIFIPLYASD 904
Query: 654 --WGFNYLTKDDAIDEFSKMPELKTAACRISKVE 685
G N LT ID+ S P K I K+E
Sbjct: 905 PSKGVNNLT-GLVIDKASGTPGYKDTPVVIEKIE 937
>pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Methanococcus
jannaschii
Length = 535
Score = 390 bits (990), Expect = e-107
Identities = 231/546 (42%), Positives = 325/546 (59%), Gaps = 22/546 (4%)
Query: 149 SKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKT 208
S FG A TN +DI + ILI G N +P++ + D GAK+IV+DP +T
Sbjct: 2 SACFGSGAMTNSIEDIELADCILIIGSNTFEQHPLIARRIMRAK--DKGAKIIVIDPRRT 59
Query: 209 ETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEW 268
TAK + I+LQ PGT++A+ AM++VIIKE L DK+F+ R F+ L ++KYTPE+
Sbjct: 60 ITAKNSDIYLQIIPGTNVALINAMINVIIKENLIDKEFIKNRTEGFEKLKEIIKKYTPEY 119
Query: 269 AEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEG 328
A KI GV LI E+A ++ A+++ G+ Q +G A+ NL ITGNIGKEG
Sbjct: 120 ASKICGVDKELIIESAKIYGNAERASIIYCMGVTQFTHGVDAVKALCNLAMITGNIGKEG 179
Query: 329 VFSGVIPGAH--CGLC--AAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQ 384
+ G + G C A+P V PG + E+ K F E W ++ GL
Sbjct: 180 TGVNPLRGQNNVQGACDMGALPNV----FPGYQKV-EDGYKLFEEYWKTDLNPNSGLTIP 234
Query: 385 AIFDAMLEGK-IKGIYIMGQNPARSLANSSKIEEALKRA-FVVVADIFPTETTKYADIVL 442
+ D GK IK +YIMG+NP S + +E+ALK F+VV DIF TET K AD+VL
Sbjct: 235 EMIDE--SGKNIKFLYIMGENPIVSDPDVKHVEKALKSLDFLVVQDIFLTETAKLADVVL 292
Query: 443 PAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDV 502
PAA W EK GT RRV +AV PPGEA DW II LA+ +G G+ FNY+ V+D+
Sbjct: 293 PAACWAEKDGTFTNTERRVQLIRKAVNPPGEALEDWIIIKKLAEKLGYGDKFNYNKVEDI 352
Query: 503 LREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLFLKG-FPTKSGKAELIPVEW 561
EI V P +G T +RL ++G +PC DEN ++ K F T +G+ ++ PVE+
Sbjct: 353 FNEIRKVTPQYRGITYKRL--KIDGIHWPCLDENHSGTKILHKDKFLTDNGRGKIFPVEY 410
Query: 562 KPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
+ E+PD++YPF LT R++ +HTGTM+ R K+L + P++ IN DAK L I +G
Sbjct: 411 REVAELPDKDYPFILTTGRIIFHYHTGTMTRRCKNLVEEINEPFIEINPDDAKSLKIENG 470
Query: 622 DLVRVETRRGSLVARAEVTENIREGVVAMPWHW---GFNYLTKDDAIDEFSKMPELKTAA 678
DLV+V +RRG + A+A +TE+I++GVV MP+H+ N LT + A+DE K+PELK A
Sbjct: 471 DLVKVISRRGEITAKARITEDIKKGVVFMPFHFVEANPNVLT-NTALDELCKIPELKVCA 529
Query: 679 CRISKV 684
+I ++
Sbjct: 530 VKIERI 535
>emb|CAC11567.1| (AL445064) formate dehydrogenase related protein [Thermoplasma
acidophilum]
Length = 996
Score = 384 bits (977), Expect = e-105
Identities = 231/686 (33%), Positives = 376/686 (54%), Gaps = 20/686 (2%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG-KLCPKGVSSYQHYVHPDRLKKPLK 67
VC +C VGC + +V K++ P++P G C KG + PDRL +PL
Sbjct: 283 VCTYCGVGCSFEMWTVGRKILKVQ--PKPESPANGISTCVKGKFGWDFVNSPDRLTEPLI 340
Query: 68 RVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA 127
R G++ F SW+EA+++IA + +EI E +GP+A+ F+ S + + E+ YL+QKLAR
Sbjct: 341 RDGDR----FRMASWDEALDLIASRLREIKEKYGPDAIEFIASSKGTNEEAYLVQKLARQ 396
Query: 128 L-GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFG 186
+ GTNNV+ + R CQ+ + G D+ S +IL G N A ++PV+
Sbjct: 397 VFGTNNVDNSSRFCQAPATTGLWRTVGYGGDAGSISDLYVSDLILAVGTNTAESHPVIAT 456
Query: 187 QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDF 246
+ ++A NG K+IV D E A+ A + + P PGTDL A+ I+ + ++F
Sbjct: 457 R-IKRAHKLNGQKIIVADLRMHEMARRADVFIHPRPGTDLVWINAVAKYIVDQGWQAREF 515
Query: 247 VAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHAN 306
+ +RVN +D +++E +T E+AEK+SGV A I + A + + V+ G+ QH
Sbjct: 516 IEKRVNFYDEYVKSLEPFTLEFAEKVSGVSADDIRKIATMIHEAKSMAVIWAMGVTQHQA 575
Query: 307 GSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETA-K 365
GS T+ A+SNL+ +TGN G+ G + G + A+ G A LPG +++E A K
Sbjct: 576 GSDTSTALSNLLLLTGNYGRPGTGGYPLRGHNNVQGASDFGAMSAYLPGYQSVSDEKARK 635
Query: 366 KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA-FV 424
K E W ++P KPG +A+ +I+ +Y++G+ + ++S I + L++ F+
Sbjct: 636 KIEEYWKCQIPDKPGYDNNTCLEAINSDRIRAMYVVGEELVETGSDSEYIRKQLEKLDFL 695
Query: 425 VVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVML 484
VV D+F +ET KYAD+VLPAAA EK GT + RR+ R ++ ++P G ++PDW+II +
Sbjct: 696 VVEDMFLSETAKYADVVLPAAASVEKEGTFVNTERRIQRIYRVMEPLGNSRPDWQIIQDV 755
Query: 485 AKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLFL 544
A +G G +NY ++++E++ + P G + ERL + +P D +TP L+
Sbjct: 756 ANRLGAG--WNYRHPSEIMQEVSKIAPIFAGVSYERL-EGFGSLQWPVSDGGKDTPLLYT 812
Query: 545 KGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGP 604
F GKA P+++ PP V D+E+ L N R++ FH G + R+ LK++ PG
Sbjct: 813 DRFNFPDGKARFYPLKYSPPLTV-DQEFDLHLNNGRILEHFHEGNETYRSPGLKEKVPGT 871
Query: 605 YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG----FNYLT 660
+V ++ A G++ GDLVR+ ++ GS+ R VT+ + + MP + G N LT
Sbjct: 872 FVEVSPELAAERGLKDGDLVRITSKWGSIKVRVLVTDRVSGKELYMPMNSGGDSAVNNLT 931
Query: 661 KDDAIDEFSKMPELKTAACRISKVEG 686
+D + P K ++ K+EG
Sbjct: 932 -SRLMDPTAHTPAYKELPVKMEKIEG 956
>sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SUBUNIT
>gi|7431437|pir||E69665 nitrate reductase (EC 1.7.99.4)
nasC - Bacillus subtilis >gi|1805403|dbj|BAA08965.1|
(D50453) catalytic subunit of nitrate reductase
[Bacillus subtilis] >gi|2632617|emb|CAB12125.1| (Z99105)
assimilatory nitrate reductase (catalytic subunit)
[Bacillus subtilis]
Length = 710
Score = 377 bits (958), Expect = e-103
Identities = 243/700 (34%), Positives = 372/700 (52%), Gaps = 30/700 (4%)
Query: 2 AEKLIPVVCPWCSVGCRLYIVSVDGYPRK----IEFDYNPKTPNKGKLCPKGVSSYQHYV 57
+EK CP+CS+ C++ +V RK I D NP T +G+LC KG++++QH +
Sbjct: 18 SEKTYDTQCPFCSMQCKMQLVEQTIVTRKKYTAIGID-NPTT--QGRLCIKGMNAHQHAL 74
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLED 117
+ R+ +PL K G+F +SWEEA+ I + I HG +A+A GS + E+
Sbjct: 75 NSSRITRPLL----KKNGEFMPVSWEEALNHIKDQVTMIQTEHGHDAMAVYGSASITNEE 130
Query: 118 NYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGP-AQTNPFDDIVKSKVILIWGY 175
YLL K AR L T +++ GRLC S+ A ++ FG TNP DI ++VI++ G
Sbjct: 131 AYLLGKFARVGLQTKYIDYNGRLCMSAAATAANQTFGADRGLTNPLSDIPHTRVIILAGT 190
Query: 176 NPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHV 235
N A P + YFEKA +NGA I +DP +T T K A +HL+ PGTD A+A ++ +
Sbjct: 191 NIAECQPTIM-PYFEKA-KENGAYFIAIDPRETATTKIADLHLKIKPGTDAALANGLVKI 248
Query: 236 IIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATV 295
II E+L ++DF+ R N F+ L + + + + V I +AAV FA + +
Sbjct: 249 IIDEQLINEDFIQSRTNGFEELKQHTDSLDLNDIAEQTSVSLVDIRKAAVKFAKETSGML 308
Query: 296 VLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG 355
GI Q +G+ N++ ITG IGK G I G G A G QLPG
Sbjct: 309 FTARGIEQQTDGTAAVKGFLNMVLITGKIGKPYSGYGAITGQGNGQGAREHGQKADQLPG 368
Query: 356 PVPL-NEETAKKFSELWGFEVPSKP--GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
+ NEE +++WG P G+ + + + +G IKG+++M NPA S N+
Sbjct: 369 YRSIENEEHRAHIAKVWGIHQDDLPRKGVSAYEVMEKINDGDIKGLFLMCSNPAVSSPNA 428
Query: 413 SKIEEALKR-AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
+ +++AL+R F V D+F +ET KYAD++LPA+++ E GT+ RV + P
Sbjct: 429 NLVKKALRRLTFFVAIDLFISETAKYADVILPASSYLEDEGTMTNVEGRVTLREASRPCP 488
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNV----IPALKGATPERLAKNLEG 527
GEAK DW+II LA ++G G YF+Y+S +D+ E+ I G + RL + G
Sbjct: 489 GEAKHDWQIICDLASALGKGRYFSYTSAEDIFNELREASRGGIADYSGISYGRLRRE-GG 547
Query: 528 CMYPCPD-ENTETPRLFLKGF--PTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQ 584
+PCP+ ++ T RLF + F P + +IP E P E P +YP +LT R++
Sbjct: 548 IHWPCPESDHPGTGRLFTESFAHPDQKAALSVIPNEPPVPKEKPTADYPLYLTTGRVMSH 607
Query: 585 FHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR 644
+ TG + ++ +L R ++ I+ + A I LV++E+ RGS+ R++++E IR
Sbjct: 608 YLTGVQTRKSAALAARHFESFMEIHPQTAATYNIEDRVLVKIESPRGSITVRSKLSEQIR 667
Query: 645 EGVVAMPWHWGFNYLTKD---DAIDEFSKMPELKTAACRI 681
+ V +P HW D +A+D KMP K A RI
Sbjct: 668 KDTVFVPIHWADAQNVNDLIGEALDPACKMPGFKVCAVRI 707
>sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-LYASE-LINKED,
SELENOCYSTEINE-CONTAINING POLYPEPTIDE) (FORMATE
DEHYDROGENASE-H ALPHA SUBUNIT) (FDH-H)
>gi|65980|pir||DEECFS formate dehydrogenase (EC 1.2.1.2)
H (hydrogenase-linked) [validated] - Escherichia coli
Length = 715
Score = 367 bits (932), Expect = e-100
Identities = 228/699 (32%), Positives = 367/699 (51%), Gaps = 30/699 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I E +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNP 177
Y++QK ARA +GTNNV+ R+C + + G A +N ++I + ++ ++GYNP
Sbjct: 118 YVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNP 177
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A ++P++ NGAK+IV DP K ETA+ A +H+ G+++A+ AM HVII
Sbjct: 178 ADSHPIVANHVINAK--RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVII 235
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVL 297
+E LYDK FVA R F+ + VE YTPE E I+GV AS I +AA ++A +A ++
Sbjct: 236 EENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILW 295
Query: 298 NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQL 353
G+ Q G T ++++L +TGN+GK + G + G C A+P
Sbjct: 296 GMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQ 355
Query: 354 PGPVPLNEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
P N E KF++ WG E +P+ G + G+++ YIMG++P ++ A
Sbjct: 356 YVKDPANRE---KFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAEL 412
Query: 413 SKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
S + +A + V+V DIF T+T AD++LP+ +W E G +R R F+AV+P
Sbjct: 413 SAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPK 472
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP 531
+ K DW+II +A +G +Y++ ++ E+ ++ P GAT E++ + L +P
Sbjct: 473 WDLKTDWQIISEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE-LGFIQWP 529
Query: 532 C---PDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
C D + T LF + F T +G A+ +W P + +EYP L+ R VG +
Sbjct: 530 CRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCR 589
Query: 589 TMSNRTKSLKKRWPGP-YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGV 647
+M+ +L P Y IN DAKRLGI LV V +R+G ++ RA+V++ +G
Sbjct: 590 SMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGA 649
Query: 648 VAMPWHWGFNYLTK--DDAIDEFSKMPELKTAACRISKV 684
+ M + W + + + +K PE K A R+ +
Sbjct: 650 IYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPI 688
>gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [Escherichia coli]
Length = 715
Score = 367 bits (931), Expect = e-100
Identities = 228/699 (32%), Positives = 367/699 (51%), Gaps = 30/699 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I E +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNP 177
Y++QK ARA +GTNNV+ R+C + + G A +N ++I + ++ ++GYNP
Sbjct: 118 YVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNP 177
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A ++P++ NGAK+IV DP K ETA+ A +H+ G+++A+ AM HVII
Sbjct: 178 ADSHPIVANHVINAK--RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVII 235
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVL 297
+E LYDK FVA R F+ + VE YTPE E I+GV AS I +AA ++A +A ++
Sbjct: 236 EENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILW 295
Query: 298 NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQL 353
G+ Q G T ++++L +TGN+GK + G + G C A+P
Sbjct: 296 GMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQ 355
Query: 354 PGPVPLNEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
P N E KF++ WG E +P+ G + G+++ YIMG++P ++ A
Sbjct: 356 YVKDPANRE---KFAKAWGVESLPAHTGYXISELPHRAAHGEVRAAYIMGEDPLQTDAEL 412
Query: 413 SKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
S + +A + V+V DIF T+T AD++LP+ +W E G +R R F+AV+P
Sbjct: 413 SAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPK 472
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP 531
+ K DW+II +A +G +Y++ ++ E+ ++ P GAT E++ + L +P
Sbjct: 473 WDLKTDWQIISEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE-LGFIQWP 529
Query: 532 C---PDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
C D + T LF + F T +G A+ +W P + +EYP L+ R VG +
Sbjct: 530 CRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCR 589
Query: 589 TMSNRTKSLKKRWPGP-YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGV 647
+M+ +L P Y IN DAKRLGI LV V +R+G ++ RA+V++ +G
Sbjct: 590 SMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGA 649
Query: 648 VAMPWHWGFNYLTK--DDAIDEFSKMPELKTAACRISKV 684
+ M + W + + + +K PE K A R+ +
Sbjct: 650 IYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPI 688
>pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragment)
>gi|710019|dbj|BAA06353.1| (D30689) catalytic subunit of
nitrate reductase [Bacillus subtilis]
Length = 676
Score = 363 bits (923), Expect = 3e-99
Identities = 231/662 (34%), Positives = 354/662 (52%), Gaps = 25/662 (3%)
Query: 36 NPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKE 95
NP T +G+LC KG++++QH ++ R+ +PL K G+F +SWEEA+ I +
Sbjct: 21 NPTT--QGRLCIKGMNAHQHALNSSRITRPLL----KKNGEFMPVSWEEALNHIKDQVTM 74
Query: 96 ILESHGPEALAFLGSERCSLEDNYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGG 154
I HG +A+A GS + E+ YLL K AR L T +++ GRLC S+ A ++ FG
Sbjct: 75 IQTEHGHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAATAANQTFGA 134
Query: 155 P-AQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKY 213
TNP DI ++VI++ G N A P + YFEKA +NGA I +DP +T T K
Sbjct: 135 DRGLTNPLSDIPHTRVIILAGTNIAECQPTIM-PYFEKA-KENGAYFIAIDPRETATTKI 192
Query: 214 AHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKIS 273
A +HL+ PGTD A+A ++ +II E+L ++DF+ R N F+ L + + + +
Sbjct: 193 ADLHLKIKPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDSLDLNDIAEQT 252
Query: 274 GVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGV 333
V I +AAV FA + + GI Q +G+ N++ ITG IGK G
Sbjct: 253 SVSLVDIRKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLITGKIGKPYSGYGA 312
Query: 334 IPGAHCGLCAAVPGVNCAQLPGPVPL-NEETAKKFSELWGFEVPSKP--GLHYQAIFDAM 390
I G G A G QLPG + NEE +++WG P G+ + + +
Sbjct: 313 ITGQGNGQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDDLPRKGVSAYEVMEKI 372
Query: 391 LEGKIKGIYIMGQNPARSLANSSKIEEALKR-AFVVVADIFPTETTKYADIVLPAAAWYE 449
+G IKG+++M NPA S N++ +++AL+R F V D+F +ET KYAD++LPA+++ E
Sbjct: 373 NDGDIKGLFLMCSNPAVSSPNANLVKKALRRLTFFVAIDLFISETAKYADVILPASSYLE 432
Query: 450 KTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNV 509
GT+ RV + PGEAK DW+II LA ++G G YF+Y+S +D+ E+
Sbjct: 433 DEGTMTNVEGRVTLREASRPCPGEAKHDWQIICDLASALGKGRYFSYTSAEDIFNELREA 492
Query: 510 ----IPALKGATPERLAKNLEGCMYPCPD-ENTETPRLFLKGF--PTKSGKAELIPVEWK 562
I G + RL + G +PCP+ ++ T RLF + F P + +IP E
Sbjct: 493 SRGGIADYSGISYGRLRRE-GGIHWPCPESDHPGTGRLFTESFAHPDQKAALSVIPNEPP 551
Query: 563 PPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGD 622
P E P +YP +LT R++ + TG + ++ +L R ++ I+ + A I
Sbjct: 552 VPKEKPTADYPLYLTTGRVMSHYLTGVQTRKSAALAARHFESFMEIHPQTAATYNIEDRV 611
Query: 623 LVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTKD---DAIDEFSKMPELKTAAC 679
LV++E+ RGS+ R++++E IR+ V +P HW D +A+D KMP K A
Sbjct: 612 LVKIESPRGSITVRSKLSEQIRKDTVFVPIHWADAQNVNDLIGEALDPACKMPGFKVCAV 671
Query: 680 RI 681
RI
Sbjct: 672 RI 673
>gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli]
Length = 715
Score = 363 bits (922), Expect = 4e-99
Identities = 227/699 (32%), Positives = 366/699 (51%), Gaps = 30/699 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINVVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I E +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNP 177
Y++QK ARA +GTNNV+ R+ + + G A +N ++I + ++ ++GYNP
Sbjct: 118 YVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNP 177
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A ++P++ NGAK+IV DP K ETA+ A +H+ G+++A+ AM HVII
Sbjct: 178 ADSHPIVANHVINAK--RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVII 235
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVL 297
+E LYDK FVA R F+ + VE YTPE E I+GV AS I +AA ++A +A ++
Sbjct: 236 EENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILW 295
Query: 298 NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQL 353
G+ Q G T ++++L +TGN+GK + G + G C A+P
Sbjct: 296 GMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQ 355
Query: 354 PGPVPLNEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
P N E KF++ WG E +P+ G + G+++ YIMG++P ++ A
Sbjct: 356 YVKDPANRE---KFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAEL 412
Query: 413 SKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
S + +A + V+V DIF T+T AD++LP+ +W E G +R R F+AV+P
Sbjct: 413 SAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPK 472
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP 531
+ K DW+II +A +G +Y++ ++ E+ ++ P GAT E++ + L +P
Sbjct: 473 WDLKTDWQIISEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE-LGFIQWP 529
Query: 532 C---PDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
C D + T LF + F T +G A+ +W P + +EYP L+ R VG +
Sbjct: 530 CRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCR 589
Query: 589 TMSNRTKSLKKRWPGP-YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGV 647
+M+ +L P Y IN DAKRLGI LV V +R+G ++ RA+V++ +G
Sbjct: 590 SMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGA 649
Query: 648 VAMPWHWGFNYLTK--DDAIDEFSKMPELKTAACRISKV 684
+ M + W + + + +K PE K A R+ +
Sbjct: 650 IYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPI 688
>pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Coli
>gi|2392332|pdb|1FDI| Oxidized Form Of Formate
Dehydrogenase H From E. Coli Complexed With The
Inhibitor Nitrite >gi|2392039|pdb|1AA6| Reduced Form Of
Formate Dehydrogenase H From E. Coli
Length = 715
Score = 363 bits (921), Expect = 5e-99
Identities = 227/699 (32%), Positives = 366/699 (51%), Gaps = 30/699 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I E +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNP 177
Y++QK ARA +GTNNV+ R+ + + G A +N ++I + ++ ++GYNP
Sbjct: 118 YVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNP 177
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A ++P++ NGAK+IV DP K ETA+ A +H+ G+++A+ AM HVII
Sbjct: 178 ADSHPIVANHVINAK--RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVII 235
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVL 297
+E LYDK FVA R F+ + VE YTPE E I+GV AS I +AA ++A +A ++
Sbjct: 236 EENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILW 295
Query: 298 NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQL 353
G+ Q G T ++++L +TGN+GK + G + G C A+P
Sbjct: 296 GMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQ 355
Query: 354 PGPVPLNEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
P N E KF++ WG E +P+ G + G+++ YIMG++P ++ A
Sbjct: 356 YVKDPANRE---KFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAEL 412
Query: 413 SKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
S + +A + V+V DIF T+T AD++LP+ +W E G +R R F+AV+P
Sbjct: 413 SAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPK 472
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP 531
+ K DW+II +A +G +Y++ ++ E+ ++ P GAT E++ + L +P
Sbjct: 473 WDLKTDWQIISEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE-LGFIQWP 529
Query: 532 C---PDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
C D + T LF + F T +G A+ +W P + +EYP L+ R VG +
Sbjct: 530 CRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSCR 589
Query: 589 TMSNRTKSLKKRWPGP-YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGV 647
+M+ +L P Y IN DAKRLGI LV V +R+G ++ RA+V++ +G
Sbjct: 590 SMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGA 649
Query: 648 VAMPWHWGFNYLTK--DDAIDEFSKMPELKTAACRISKV 684
+ M + W + + + +K PE K A R+ +
Sbjct: 650 IYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPI 688
>gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha subunit
[Thermococcus litoralis]
Length = 637
Score = 362 bits (919), Expect = 8e-99
Identities = 234/694 (33%), Positives = 359/694 (51%), Gaps = 76/694 (10%)
Query: 8 VVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPN-KGKLCPKGVSSYQHYVHPDRLKKPL 66
+ CP+C GCR Y+ +P IE+ + PN +GKLCPKG + +++ + +RLK PL
Sbjct: 4 ITCPYCGAGCRAYVKKELSHPFIIEYVTDINVPNDRGKLCPKGNAMFEYLLSKERLKTPL 63
Query: 67 KRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
K + GKF +ISW+EAI IA + ++ P L F+ + S E YL QKLAR
Sbjct: 64 KAIER---GKFVKISWKEAINEIASFIRGYMKDD-PNRLMFIAGGKVSNESAYLFQKLAR 119
Query: 127 ALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTN--PFDDIVKSKVILIWGYNPAATNPVL 184
+GTNNV+ LC V+ I + N +DDI +S VI++WG N A T P++
Sbjct: 120 NIGTNNVDNTSHLCHG---VSVRAILDANFERNWATYDDIEESNVIILWGANLAETAPLI 176
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE-LYD 243
F + + + AK+IV+DP KT+T K+A IH++P+PGTD+ + A++++++K +
Sbjct: 177 FRRVLKAK--NRSAKIIVIDPRKTKTTKFASIHVRPFPGTDIVLINALINLLLKRRNIKS 234
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
F A + + K TPE+AE+I+GVP I E A ++ GI
Sbjct: 235 AHFKASDLE-------IISKNTPEYAERITGVPVRDIEEIAREIGLARRGIILWGSGIAM 287
Query: 304 HANGSITAMAISNLIAIT--------GNIGKEGVFS-GVIPGAHCGLCAAVPGVNCAQLP 354
H+NG +I L +I G +GV GV+P +PG
Sbjct: 288 HSNGYDVIRSIITLASIVDFKVLPLAGQNNSQGVMDMGVVPNF-------LPGYR----- 335
Query: 355 GPVPLNEETAKKFSELW-GFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSS 413
+ F E W E+P++ GL + + Y+MG N A S +
Sbjct: 336 -----TYDNVYIFREAWKNEELPTEVGLDIPKSIKEAQKRNVSAFYVMGANIALSFPEA- 389
Query: 414 KIEEALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPG 472
E+AL+RA FV+V DIFPT+TT+ ADIVLPAAA+ E G+ RR+ S + PPG
Sbjct: 390 --EKALRRAEFVIVQDIFPTQTTELADIVLPAAAFLESNGSTTNAERRIQWSSRVKWPPG 447
Query: 473 EAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP- 531
+AKPDW I+ L ++GL F++ +++LREI+ ++P A P L + EG M+
Sbjct: 448 DAKPDWAILCELGNALGL-RGFDFYFPEEILREISTLVPQYANANPRTLMRTPEGVMWNI 506
Query: 532 CPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMS 591
PD PTK + +P+ +PP + R VGQF TGTM+
Sbjct: 507 VPDSQ-----------PTKVYVSNKMPL-LEPP----------VMITVRYVGQFQTGTMT 544
Query: 592 NRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
R+ L RW ++++E DA++ GI+ GD V++ + G + +V++ + G + P
Sbjct: 545 KRSPPLNIRWQDLLILVSEEDAQKWGIKDGDRVKLVSENGKYIGTVKVSKTVIPGTIKAP 604
Query: 652 WHWGFNYLTKDDAIDEFSKMPELKTAACRISKVE 685
WH G N + IDE + +P+LK +C++ +VE
Sbjct: 605 WHEGVNRI-MGLKIDEKTGLPQLKACSCKLERVE 637
>gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate dehydrogenase H
[Escherichia coli K12]
Length = 715
Score = 354 bits (899), Expect = 2e-96
Identities = 227/700 (32%), Positives = 366/700 (51%), Gaps = 32/700 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I E +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLC-QSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYN 176
Y++QK ARA +GTNNV+ R+ + + G A +N ++I + ++ ++GYN
Sbjct: 118 YVMQKFARAVIGTNNVDCCARV-UHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYN 176
Query: 177 PAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVI 236
PA ++P++ NGAK+IV DP K ETA+ A +H+ G+++A+ AM HVI
Sbjct: 177 PADSHPIVANHVINAK--RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVI 234
Query: 237 IKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVV 296
I+E LYDK FVA R F+ + VE YTPE E I+GV AS I +AA ++A +A ++
Sbjct: 235 IEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAIL 294
Query: 297 LNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLC--AAVPGVNCAQ 352
G+ Q G T ++++L +TGN+GK + G + G C A+P
Sbjct: 295 WGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGY 354
Query: 353 LPGPVPLNEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLAN 411
P N E KF++ WG E +P+ G + G+++ YIMG++P ++ A
Sbjct: 355 QYVKDPANRE---KFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAE 411
Query: 412 SSKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKP 470
S + +A + V+V DIF T+T AD++LP+ +W E G +R R F+AV+P
Sbjct: 412 LSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP 471
Query: 471 PGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMY 530
+ K DW+II +A +G +Y++ ++ E+ ++ P GAT E++ + L +
Sbjct: 472 KWDLKTDWQIISEIATRMGYP--MHYNNTQEIWDELRHLCPDFYGATYEKMGE-LGFIQW 528
Query: 531 PC---PDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHT 587
PC D + T LF + F T +G A+ +W P + +EYP L+ R VG +
Sbjct: 529 PCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPIDKLTDEYPMVLSTVREVGHYSC 588
Query: 588 GTMSNRTKSLKKRWPGP-YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREG 646
+M+ +L P Y IN DAKRLGI LV V +R+G ++ RA+V++ +G
Sbjct: 589 RSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKG 648
Query: 647 VVAMPWHWGFNYLTK--DDAIDEFSKMPELKTAACRISKV 684
+ M + W + + + +K PE K A R+ +
Sbjct: 649 AIYMTYQWWIGACNELVTENLSPITKTPEYKYCAVRVEPI 688
>pir||E69850 formate dehydrogenase homolog yjgC - Bacillus subtilis
>gi|2612888|gb|AAC46312.1| (AF015825) formate
dehydrogenase alpha subunit homolog [Bacillus subtilis]
>gi|2633570|emb|CAB13073.1| (Z99110) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 985
Score = 349 bits (887), Expect = 5e-95
Identities = 219/686 (31%), Positives = 362/686 (51%), Gaps = 20/686 (2%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG-KLCPKGVSSYQHYVHPDRL 62
K VC +C VGC + + K+E + P G C KG + +RL
Sbjct: 259 KKTKTVCTYCGVGCSFDVWTKGRDILKVE--PQEEAPANGISTCVKGKFGWDFVNSEERL 316
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
KPL R G+ F E WEEA+ +IA KF E+ E+ GP++LAF+ S +C+ E++YL+Q
Sbjct: 317 TKPLIREGDH----FREAEWEEALLLIASKFTELKEAFGPDSLAFITSSKCTNEESYLMQ 372
Query: 123 KLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
KLAR +GTNNV+ R CQS + G + DI ++ ++LI G N + ++
Sbjct: 373 KLARGVIGTNNVDNCSRYCQSPATAGLFRTVGYGGDSGSITDIAQADLVLIIGSNTSESH 432
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
PVL + ++A G K+IV D K E A+ + + +QP G+D+ A+ +I+
Sbjct: 433 PVLSTR-IKRAHKLRGQKVIVADIRKHEMAERSDLFVQPRAGSDIVWLNAIAKYLIENGK 491
Query: 242 YDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGI 301
D+ F+ ERVN D +++ YT E+AE+ +G+ + + A + + + G+
Sbjct: 492 ADERFLRERVNGRDEYVKSLAPYTLEYAEEKTGIDQETLIQMAEMIGQADSVCALWAMGV 551
Query: 302 NQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-N 360
QH GS T+ AISNL+ +TGN GK G S + G + A+ G +LPG + +
Sbjct: 552 TQHIGGSDTSTAISNLLLVTGNYGKPGAGSYPLRGHNNVQGASDFGSMPDRLPGYEKVTD 611
Query: 361 EETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK 420
E+ +K+ +WG +P +PG+ + + + G++K +Y+ G+ +N + + A +
Sbjct: 612 EQVRQKYERVWGVPLPKEPGMTNHEMIEKIHSGQLKAMYVKGEEMGLVDSNINHVHAAYE 671
Query: 421 RA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWE 479
+ F VV DIF + T ++AD+VLPA+ EK GT RR+ R +Q +P GE+KPDW+
Sbjct: 672 KLDFFVVQDIFLSRTAEFADVVLPASPSLEKEGTFTNTERRIQRLYQVFEPLGESKPDWQ 731
Query: 480 IIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTET 539
II+ +A +G G + + + D++ E + P G T ERL + +P + ++
Sbjct: 732 IIMEVANKLGAGWLYEHPA--DIMEEAAKLSPIYAGVTYERL-EGYNSLQWPVNADGKDS 788
Query: 540 PRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKK 599
P LF + FP GKA L PV+W P E EEY + N RL+ FH G ++ ++K + +
Sbjct: 789 PLLFTERFPFPDGKAILYPVQWTEPKEF-GEEYDIHVNNGRLLEHFHEGNLTYKSKGISE 847
Query: 600 RWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWH----WG 655
+ P ++ I+ A GI+ G LVR+ + G++ + +T+ ++ V +P +
Sbjct: 848 KTPEVFLEISPELAAERGIQDGTLVRLTSPFGNVKVKCLITDRVKGKEVYLPMNDSGEAA 907
Query: 656 FNYLTKDDAIDEFSKMPELKTAACRI 681
N LT A D+ + P K + ++
Sbjct: 908 INLLTGSHA-DKDTDTPAYKETSAKM 932
>dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catalytic subunit)
[Bacillus halodurans]
Length = 743
Score = 344 bits (874), Expect = 2e-93
Identities = 227/697 (32%), Positives = 362/697 (51%), Gaps = 38/697 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNK------GKLCPKGVSSYQHYVHPDRLK 63
CP+CSV C + + + + PNK G+LC KGV ++QH VH +R++
Sbjct: 25 CPFCSVQCSMTLTE----EKLVATSRFKAIPNKQDPTSEGRLCIKGVHAHQHTVHRERIR 80
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
+PL + G G F E SWE A+ +IA++FK + +S+G +A+ G + E+ YLL K
Sbjct: 81 QPLVKTG----GAFVETSWEVALGLIAERFKRLQKSYGQDAVGVFGGGSLTNEEAYLLGK 136
Query: 124 LAR-ALGTNNVEFAGRLCQSSNFVARSKIFG-GPAQTNPFDDIVKSKVILIWGYNPAATN 181
AR ALGT +++ GR C SS A + FG TN ++ ++ I++ G N A
Sbjct: 137 FARLALGTRYIDYNGRYCMSSAAAAANLTFGVDRGLTNELREVEDAECIVLAGTNLAECQ 196
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
P L Y +A NGA +IV+DP +T T K A++HL+P PGTD AIA ML V+I+EEL
Sbjct: 197 PTLM-PYLRRA-KKNGAFIIVLDPRETGTTKIANLHLKPKPGTDGAIAAGMLKVLIEEEL 254
Query: 242 YDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGI 301
D+ F+ R N F+ + +++ +GVP I EAA+ F + G+
Sbjct: 255 IDRTFIEARTNGFEQVESELQEIALAELALAAGVPEEQIREAAIRFGEAQTGMIFTARGV 314
Query: 302 NQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-N 360
Q A G+ +++ TG IG+ G + G G G QLPG + +
Sbjct: 315 EQQATGTADVRQFLHILLATGKIGRYACGYGAVTGQGNGQGGREHGQKADQLPGYRSIES 374
Query: 361 EETAKKFSELWGFE---VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEE 417
E + +W E +P K G+ +F + + ++G++IMG NP S + + ++
Sbjct: 375 PEDRAYIASVWNVEEKDIPRK-GVSAFELFQKIDQQDVRGMFIMGSNPVLSSPHENLVKR 433
Query: 418 ALKRAFV-VVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKP 476
AL R V VV D+F +ET +YADI+LP ++ E GT+ RV+ + P G+AK
Sbjct: 434 ALSRLDVLVVVDMFISETAEYADIILPTTSYLEDEGTMTNFEGRVVHRPGSKPPFGKAKH 493
Query: 477 DWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALK----GATPERLAKNLEGCMYPC 532
DW+I+ LA+++ F +SS +++ E+ K G + E++ EG ++PC
Sbjct: 494 DWQILCELAEALDRSHGFQFSSPEEIFNELCLASKGGKADYSGLSYEKIKG--EGVLWPC 551
Query: 533 PDENTE-TPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMS 591
P + E T RLF F T+ G+A+ V P + ++EYP LT R++ Q+ +GT +
Sbjct: 552 PTKEHEGTGRLFEDRFYTEDGRAQFGSVHC--PVDSENDEYPILLTTGRVLTQYLSGTQT 609
Query: 592 NRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
R+ +L + P P+V+++ A I+ D V V + G +A +E IRE V +P
Sbjct: 610 RRSDALLFKEPEPFVLLHPETASSYQIQDEDWVMVRSPYGEAKLKARQSEGIREDTVFVP 669
Query: 652 WHW----GFNYLTKDDAIDEFSKMPELKTAACRISKV 684
+HW N++ + +D S+MP K ++ K+
Sbjct: 670 FHWAGSVSINHVVAPE-LDPTSRMPAFKRTKVKLKKI 705
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
Length = 723
Score = 340 bits (862), Expect = 4e-92
Identities = 241/725 (33%), Positives = 354/725 (48%), Gaps = 52/725 (7%)
Query: 3 EKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRL 62
EK + VC +C GC + + DG + + NP N G LC KG +R+
Sbjct: 6 EKWVKGVCRYCGTGCGVLVGVKDG--KAVAIQGNPNNHNAGLLCLKGSLLIPVLNSKERV 63
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
+PL R KG GK E +SW+EA++++A +F+ ++ +GP ++A+ GS +C E++Y+
Sbjct: 64 TQPLVR-RHKG-GKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVAN 121
Query: 123 KLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
K+ + GTNNV+ RLC +S FG + DI ++ I G N + +
Sbjct: 122 KIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAH 181
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
PVLF + + ++ G K+IV DP +T T++ A +H+ PGTDLA +M VII EEL
Sbjct: 182 PVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEEL 241
Query: 242 YDKDFVAERVNNFDALARA---------VEKYTPEWAEKISGVPASLIHEAAVLFATGGN 292
+ F VN DA + +E Y PE +I VP I+ AA FA
Sbjct: 242 DNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAA 301
Query: 293 ATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP--GVNC 350
+ GINQ G I NL ITG I + G S + G C V G
Sbjct: 302 TMSLWCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQP-NACGGVRDGGALS 360
Query: 351 AQLP-GPVPLNEETAKKFSELWGF---EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPA 406
LP G N + + +LWG + +PG H A+F+A+ G +K + I NPA
Sbjct: 361 HLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPA 420
Query: 407 RSLANSSKIEEALKR--AFVVVADIFPTETT-KYADIVLPAAAWYEKTGTVITQNRRVMR 463
+L N +K+ +A+ +F+V + FP T +YAD+VLP A W E+ G RR
Sbjct: 421 HTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSL 480
Query: 464 SFQAVKPPGEAKPDWEIIVMLAKSIGLG-EYFNYSSVDDVLREINNVIPALK----GATP 518
+ +AV PPG+ +P +V A+ G+ + N+ + +DV E V G T
Sbjct: 481 TEKAVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTR 540
Query: 519 ERLAKNLEGCMYPCPDEN------------------TETPRLFLKGFPTKSGKAELIPVE 560
ERL K G ++PCP E+ R F G P G+A +
Sbjct: 541 ERLRKE-SGLIWPCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKP--DGRAVIWMRP 597
Query: 561 WKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRS 620
K E PD EYP +LT+ R++ +HT TM+ + L+K P +V INE DA R GI+
Sbjct: 598 AKGAAEEPDAEYPLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKH 657
Query: 621 GDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTK--DDAIDEFSKMPELKTAA 678
GD V VETRR ++ A V++ R G++A+P+ + K DA D S+ PE K A
Sbjct: 658 GDSVIVETRRDAMELPARVSDVCRPGLIAVPFFDPKKLVNKLFLDATDPVSREPEYKICA 717
Query: 679 CRISK 683
R+ K
Sbjct: 718 ARVRK 722
>sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|3820902|emb|CAA77019.1|
(Y18045) nitrate reductase [Desulfovibrio desulfuricans]
Length = 755
Score = 338 bits (858), Expect = 1e-91
Identities = 242/725 (33%), Positives = 354/725 (48%), Gaps = 52/725 (7%)
Query: 3 EKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRL 62
EK + VC +C GC + + DG I+ D P N G LC KG +R+
Sbjct: 38 EKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGD--PNNHNAGLLCLKGSLLIPVLNSKERV 95
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
+PL R KG GK E +SW+EA++++A +F+ ++ +GP ++A+ GS +C E++Y+
Sbjct: 96 TQPLVR-RHKG-GKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVAN 153
Query: 123 KLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
K+ + GTNNV+ RLC +S FG + DI ++ I G N + +
Sbjct: 154 KIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAH 213
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
PVLF + + ++ G K+IV DP +T T++ A +H+ PGTDLA +M VII EEL
Sbjct: 214 PVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEEL 273
Query: 242 YDKDFVAERVNNFDALARA---------VEKYTPEWAEKISGVPASLIHEAAVLFATGGN 292
+ F VN DA + +E Y PE +I VP I+ AA FA
Sbjct: 274 DNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAA 333
Query: 293 ATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP--GVNC 350
+ GINQ G I NL ITG I + G S + G C V G
Sbjct: 334 TMSLWCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQP-NACGGVRDGGALS 392
Query: 351 AQLP-GPVPLNEETAKKFSELWGF---EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPA 406
LP G N + + +LWG + +PG H A+F+A+ G +K + I NPA
Sbjct: 393 HLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPA 452
Query: 407 RSLANSSKIEEALKR--AFVVVADIFPTETT-KYADIVLPAAAWYEKTGTVITQNRRVMR 463
+L N +K+ +A+ +F+V + FP T +YAD+VLP A W E+ G RR
Sbjct: 453 HTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSL 512
Query: 464 SFQAVKPPGEAKPDWEIIVMLAKSIGLG-EYFNYSSVDDVLREINNVIPALK----GATP 518
+ +AV PPG+ +P +V A+ G+ + N+ + +DV E V G T
Sbjct: 513 TEKAVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTR 572
Query: 519 ERLAKNLEGCMYPCPDEN------------------TETPRLFLKGFPTKSGKAELIPVE 560
ERL K G ++PCP E+ R F G P G+A +
Sbjct: 573 ERLRKE-SGLIWPCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKP--DGRAVIWMRP 629
Query: 561 WKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRS 620
K E PD EYP +LT+ R++ +HT TM+ + L+K P +V INE DA R GI+
Sbjct: 630 AKGAAEEPDAEYPLYLTSMRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKH 689
Query: 621 GDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTK--DDAIDEFSKMPELKTAA 678
GD V VETRR ++ A V++ R G++A+P+ + K DA D S+ PE K A
Sbjct: 690 GDSVIVETRRDAMELPARVSDVCRPGLIAVPFFDPKKLVNKLFLDATDPVSREPEYKICA 749
Query: 679 CRISK 683
R+ K
Sbjct: 750 ARVRK 754
>gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydrogenase alpha subunit
[Sinorhizobium meliloti]
Length = 959
Score = 337 bits (854), Expect = 3e-91
Identities = 226/700 (32%), Positives = 359/700 (51%), Gaps = 30/700 (4%)
Query: 3 EKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRL 62
E + C +C VGC + + G + N+G C KG +Y + H DR+
Sbjct: 248 EHSVVTTCAYCGVGCS-FKAEMRGEELVRMVPWKDGQANRGHSCVKGRFAYGYSNHRDRI 306
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
P+ R EK + E++WEEA +A +F+ I +G +++ + S RC+ E+ +L+Q
Sbjct: 307 LNPMVR--EKVTDPWREVTWEEAFAHVASEFRRIQYQYGRDSVGGITSSRCTNEETFLVQ 364
Query: 123 KLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
KL RA G NNV+ R+C S ++ FG A T FD + + V +I G NP +
Sbjct: 365 KLVRAGFGNNNVDTCARVCHSPTGYGLNQTFGTSAGTQDFDSVEHTDVAVIIGANPTDGH 424
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHI----HLQPYPGTDLAIALAMLHVII 237
PV + K L GAKLIV+DP + + + AH+ HL PGT++AI A+ HVI+
Sbjct: 425 PVFASRL--KKRLRQGAKLIVIDPRRIDLVRSAHVEASYHLPLKPGTNVAILTAIAHVIV 482
Query: 238 KEELYDKDFVAERVN--NFDALARAVEK--YTPEWAEKISGVPASLIHEAAVLFATGGNA 293
E L ++ F+ ER + F+ A V + ++PE E +GVP L+ AA L+ATGGN
Sbjct: 483 TEGLANEAFIRERCDWSEFEDWAAFVAEPHHSPEATEAYTGVPPELVRGAARLYATGGNG 542
Query: 294 TVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQL 353
+ G+ +H+ GS T MAI+NL +TGNIG+ GV + G + + G +L
Sbjct: 543 AIYYGLGVTEHSQGSTTVMAIANLAMLTGNIGRPGVGVNPLRGQNNVQGSCDMGSFPHEL 602
Query: 354 PGPVPLNEETAKK-FSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
PG ++++ ++ F +LWG + +PGL + DA +EG KG+Y+ G++ +S ++
Sbjct: 603 PGYRHISDDATREIFEKLWGVTLNHEPGLRIPNMLDAAVEGTFKGLYVQGEDILQSDPDT 662
Query: 413 SKIEEAL-KRAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
+ L VVV D+F ET YA + LP + + EK GT RR+ R + V P
Sbjct: 663 KHVAAGLAAMECVVVHDLFLNETANYAHVFLPGSTFLEKDGTFTNAERRINR-VRRVMRP 721
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYP 531
DWE+ +A+++GL +NY D++ EI P+ + + L K + +P
Sbjct: 722 KNGYADWEVTQKMAQAMGLA--WNYRHPSDIMDEIAATTPSFAMVSYDYLDK-MGSVQWP 778
Query: 532 CPDE-NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTM 590
C ++ +P + + GF GK + I E+ E +P LT R++ Q++ G
Sbjct: 779 CNEKAPLGSPIMHVDGF--VRGKGKFIRTEYVATDERTGPRFPLLLTTGRILSQYNVGAQ 836
Query: 591 SNRTKSLKKRWPG-PYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVA 649
+ RT+++ W + I+ DA++ GIR GD VR+ +R G RA +T+ + GVV
Sbjct: 837 TRRTENVV--WHAEDRLEIHPHDAEQRGIRDGDWVRLASRSGDTTLRALITDRVAPGVVY 894
Query: 650 MPWH---WGFNYLTKDDAIDEFSKMPELKTAACRISKVEG 686
+H N +T D D + PE K A ++S G
Sbjct: 895 TTFHHPSTQANVIT-TDFTDWATNCPEYKVTAVQVSPSNG 933
>emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase alpha subunit
[Ralstonia eutropha]
Length = 959
Score = 337 bits (854), Expect = 3e-91
Identities = 230/696 (33%), Positives = 350/696 (50%), Gaps = 40/696 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C VGC + + G Y N+G C KG ++ + H DR+ KP+ R
Sbjct: 250 CAYCGVGCS-FKAEMKGNKVVRMVPYKDGKANEGHACVKGRFAWGYATHKDRILKPMIRA 308
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA-L 128
K + E+SWEEAI+ A +FK I HG +++ + S RC+ E+ YL+QKL RA
Sbjct: 309 --KITDPWREVSWEEAIDYAASQFKRIQAEHGKDSIGGIVSSRCTNEEGYLVQKLVRARF 366
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQY 188
G NNV+ R+C S + G A T F + K+ VI++ G NP +PV F
Sbjct: 367 GNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFKSVEKADVIMVIGANPTDGDPV-FASR 425
Query: 189 FEKAILDNGAKLIVVDPVKTETAKYAHI----HLQPYPGTDLAIALAMLHVIIKEELYDK 244
+K L GA+LIVVDP + + HI HLQ PGT++A+ ++ HVI+ E L ++
Sbjct: 426 MKKG-LRAGARLIVVDPRRIDLVDSPHIRADYHLQLRPGTNVALVTSLAHVIVTEGLLNE 484
Query: 245 DFVAERVNNFDALARAVEKY---------TPEWAEKISGVPASLIHEAAVLFATGGNATV 295
F+AER + RA +++ +PE E ++G+PA +
Sbjct: 485 AFIAERCED-----RAFQQWRDFVSLPENSPEAMESVTGIPAEHCAVPHACMPPAATLRI 539
Query: 296 VLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG 355
G+ +HA GS T M I+NL TGNIG+EGV + G + + G +LPG
Sbjct: 540 YYGLGVTEHAQGSTTVMGIANLAMATGNIGREGVGVNPLRGQNNVQGSCDIGSFPHELPG 599
Query: 356 PVPLNEETAK-KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSK 414
+++ T + F W E+ +PGL +F+A L G KG+Y G++ +S N+
Sbjct: 600 YRHVSDSTTRGLFEAAWNVEISPEPGLRIPNMFEAALAGSFKGLYFQGEDIVQSDPNTQH 659
Query: 415 IEEAL-KRAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGE 473
+ EAL +VV DIF ET KYA + LP +++ EK GT RR+ R + V PP
Sbjct: 660 VSEALSSMECIVVQDIFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISR-VRKVMPPKA 718
Query: 474 AKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCP 533
DWE ++LA + LG +Y +++ EI + P G + +RL K L +PC
Sbjct: 719 RYADWEATILLANA--LGYPMDYKHPSEIMDEIARLTPTFAGVSYKRLDK-LGSIQWPCN 775
Query: 534 DENTE-TPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSN 592
+ E TP + + F GK + I ++ P E +P LT R++ Q++ G +
Sbjct: 776 ADAPEGTPTMHIDTF--VRGKGKFIITKYVPTTEKITRAFPLILTTGRILSQYNVGGQTR 833
Query: 593 RTKSLKKRWPG-PYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
RT ++ W + I+ DA+ GI+ GD V V++R G V RA V E ++ GVV
Sbjct: 834 RTDNV--YWHAEDRLEIHPHDAEERGIKDGDWVGVQSRAGDTVLRAIVNERMQPGVVYTT 891
Query: 652 WHW---GFNYLTKDDAIDEFSKMPELKTAACRISKV 684
+H+ G N +T D++ D + PE K A ++ V
Sbjct: 892 FHFPESGANVITTDNS-DWATNCPEYKVTAVQVLPV 926
>pir||A83424 assimilatory nitrate reductase PA1779 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947759|gb|AAG05168.1|AE004603_8 (AE004603)
assimilatory nitrate reductase [Pseudomonas aeruginosa]
Length = 908
Score = 328 bits (832), Expect = 1e-88
Identities = 231/704 (32%), Positives = 347/704 (48%), Gaps = 36/704 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
C +C VGC + ++ DG R + +P+ P N G+LC KG S + R P R
Sbjct: 14 CCYCGVGCGV-LIEHDG-ERILGVQGDPRHPANFGRLCSKGASLHLTGDLQARALYPQLR 71
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARAL 128
+G++ + WE A+E A +F E + HGP+++AF S + ED Y KLARAL
Sbjct: 72 LGKQLARARSD--WESALEHAAGRFAETIREHGPDSVAFYISGQLLTEDYYAFNKLARAL 129
Query: 129 -GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQ 187
GTNN++ RLC SS V + G A ++D+ + +LI G N A +PVLF +
Sbjct: 130 VGTNNIDSNSRLCMSSAVVGYKRSLGADAPPCSYEDLDCADCVLIAGSNMAFAHPVLFRR 189
Query: 188 YFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFV 247
+++V+DP +T+T + A +HL PGTD+A+ +LH+++ E+ D+ F+
Sbjct: 190 LEAAKAARPEMRIVVIDPRRTDTCELADLHLALLPGTDVALFHGILHILLWEDWIDRSFI 249
Query: 248 AERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANG 307
AE F L V YTP I G+ + + A + G+NQ + G
Sbjct: 250 AEHTEGFADLKELVRDYTPAAVADICGIDRADLQRCAEWIGRSPRFLSLWCMGLNQSSAG 309
Query: 308 SITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETA--- 364
S A+ NL TG IG+ +G P + G A+ G L +P + E A
Sbjct: 310 SAKNSALINLHLATGKIGR----AGCGPFSLTGQPNAMGGRETGSLANLLPGHREAADPG 365
Query: 365 --KKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR 421
+ + WG E +P+ PGL +FDA+ +G+IK ++I NPA+SL + KI EAL R
Sbjct: 366 HRAEVAHYWGVEQLPTSPGLSAIELFDAVHDGRIKALWIACTNPAQSLPDQRKIHEALAR 425
Query: 422 A-FVVVADIFP-TETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWE 479
FVVV + F TET +YAD++LPAA+W EK G+V RR+ +AV PPGEA+ DW
Sbjct: 426 CPFVVVQEAFAGTETCQYADLLLPAASWGEKEGSVTNSERRISHVRRAVPPPGEARQDWN 485
Query: 480 IIVMLAKSI---------GLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMY 530
I+ A+ + GL + + S+ D + + L L +
Sbjct: 486 IVCDFARRLEGHLRPAKPGLFAFADSRSLFDEYKLLTAGRDLDLSGLSYALLDRLGPQQW 545
Query: 531 PCPDENTE-TPRLFLKG-FPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
P P + T RL+ G FPT SG+A+L+ ++ E D YP L RL Q+H
Sbjct: 546 PFPTGAEQGTARLYADGRFPTASGRAQLVAEPYRAAQEKRDARYPLTLNTGRLRDQWHGM 605
Query: 589 TMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVV 648
+ + L V ++ + +R + G LVR+++RRG+LV +++R G
Sbjct: 606 SRTGTCARLFGHEEEALVHLHPEELRRRQLLDGQLVRLKSRRGALVLPVSADDSVRPGQA 665
Query: 649 AMPWHWGFNYL-------TKDDAIDEFSKMPELKTAACRISKVE 685
+P HWG +L A D SK PELK A ++ VE
Sbjct: 666 FLPMHWGDRFLKGLGCNVLTLPAFDPLSKQPELKHAGVQVESVE 709
>gb|AAF74559.1|AF203789_1 (AF203789) assimilatory nitrate reductase [Pseudomonas putida]
Length = 724
Score = 323 bits (819), Expect = 4e-87
Identities = 225/724 (31%), Positives = 345/724 (47%), Gaps = 44/724 (6%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
MA + VCP+C VGC + + DG KI D N G+LC KG++++Q
Sbjct: 1 MANSEVRSVCPYCGVGCGIVMSVADGKVGKISGD-KLHPSNFGRLCTKGLTAHQPLSASG 59
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
R+ R ++ S ++AI A++ + I++ HGP+A+A S + SLE YL
Sbjct: 60 RMADAYLR--QQRSQPPVRTSMDQAIAATAERLRGIIDQHGPDAVALYVSGQMSLEAQYL 117
Query: 121 LQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAA 179
KLA+ + T ++E RLC +S G + D + V L+ G N A
Sbjct: 118 ANKLAKGFIRTRHIESNSRLCMASASSGYKLSLGADGPPGSYQDFEHADVFLVIGANMAD 177
Query: 180 TNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKE 239
+P+LF + ++ + GAKLIVVDP ++ TA A + LQ PG+D+A+ +LH++ +
Sbjct: 178 CHPILFLRLLDR--VKAGAKLIVVDPRRSATADKADLFLQVRPGSDMALLNGLLHLLHRN 235
Query: 240 ELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNE 299
+ DF+A +D + ++ YTPE I+G+ + I +AA + N
Sbjct: 236 GHTNPDFIARHTEGWDEMPAFLDDYTPERVAAITGLAEADIIKAAEWIGSANNWMSCWTM 295
Query: 300 GINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL 359
G+NQ +G+ + AI NL TG I + G + G + G LPG
Sbjct: 296 GLNQSIHGTWHSNAICNLHLATGAICRPGSGPFSLTGQPNAMGGRDMGYMGPGLPGQRSA 355
Query: 360 NEETAKKFSEL-WGF---EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKI 415
E + F E W + S+ G A+F M G++K +++ NP S+AN ++
Sbjct: 356 LVEDDRAFVERQWQLPPGSLRSEGGEGTVALFGQMKAGEVKACWVICSNPVASVANRQQV 415
Query: 416 EEALKRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGE 473
+ L++A V+ D F TET +YADI+LPAA W E G +I R + +AV+PPG+
Sbjct: 416 IDGLRKAELVITQDAFLDTETNRYADILLPAALWAEGEGVMINSERNLTLMPRAVEPPGQ 475
Query: 474 AKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAK---NLEGCMY 530
+ PDW+II +A ++G + F+Y + + V EI G + + +
Sbjct: 476 SLPDWQIIARVACAMGYADAFDYPNAEAVYEEIRRFHNPSTGYDLRGIGYAELRTQPRQW 535
Query: 531 PCP--DENTETPRLFLK------------------GFPTKSGKAELIPVEWKPPGEVPDE 570
PC E +P +L FPT SGKA W P EVPD+
Sbjct: 536 PCAPGSEQHRSPLRYLNDGSSQALLLDARGRRPALAFPTASGKAHFFARPWLPAAEVPDD 595
Query: 571 EYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRR 630
+YP L R+ Q+HT T + + +L K PGPY+ I+ DA RLG+ D V V +RR
Sbjct: 596 DYPMVLNTGRVQHQWHTLTKTGKVPALNKLEPGPYLEIHPEDAARLGVAEKDQVAVRSRR 655
Query: 631 GSLVARAEVTENIREGVVAMPWHW--------GFNYLTKDDAIDEFSKMPELKTAACRIS 682
G V A +++ + G P+HW N T DA+D S P K A +
Sbjct: 656 GQAVLPARISDRVMPGNCFAPFHWNDLIGEQLAINAAT-CDAVDPLSLQPAFKHCAVALE 714
Query: 683 KVEG 686
+V G
Sbjct: 715 RVAG 718
>sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 nitrate reductase (EC
1.7.99.4) chain A narB - Synechocystis sp. (strain PCC
6803) >gi|1652567|dbj|BAA17488.1| (D90906) nitrate
reductase [Synechocystis sp.]
Length = 714
Score = 322 bits (817), Expect = 7e-87
Identities = 229/711 (32%), Positives = 354/711 (49%), Gaps = 44/711 (6%)
Query: 9 VCPWCSVGCRLYIVS------VD-GYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDR 61
+CP+C VGC L V+ VD G+ KI D + ++G +C KG + + + R
Sbjct: 13 LCPYCGVGCGLEAVASPQKSVVDAGHAHKIRGDRQHPS-SQGMVCVKGATVMES-MDKQR 70
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL 121
L P+ R + +++ISWE A+EI+ K +++ ++ G L S + ED Y+
Sbjct: 71 LLYPMFR--SSLDQPWQQISWEAALEIVVDKIQQVKQTLGVSGLCMYASGQMQTEDYYVA 128
Query: 122 QKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
QKL + LGTNN + RLC SS A S FG ++D+ + + G N A
Sbjct: 129 QKLFKGCLGTNNFDTNSRLCMSSAVSAYSLSFGSDGPPCCYEDLEITDCAFLIGTNTADC 188
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
+P++F + + + KLIVVDP T TA+ A +HL PG+D+ + + +++ K
Sbjct: 189 HPIIFNRLRKHHKQNPHVKLIVVDPRCTATAEVADLHLAINPGSDITLLHGIAYLLKKWN 248
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLN-- 298
L D+ F+ +F+ + ++ Y PE +I G+ + AA + GNA VL+
Sbjct: 249 LIDQKFIDNHTQDFEQYCQVIDHYPPEKVTQICGISLEQLETAAHYW---GNAKTVLSLW 305
Query: 299 -EGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPV 357
G+NQ G+ + NL +TG IGK G + G + G LPG
Sbjct: 306 SMGMNQSFQGTAKGRCLINLHLLTGQIGKPGSGPFSLTGQPNAMGGREAGGLSHLLPGYR 365
Query: 358 PL-NEETAKKFSELWGF---EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSS 413
+ N + ++ +LW + +PGL +F + ++ ++I+ NP S+ +
Sbjct: 366 SIKNPQHRQEVEQLWQISPGRINPEPGLSAWEMFMGLENQQVGFLWIVATNPVVSMPDLE 425
Query: 414 KIEEALKRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
++++AL+++ F + D + PTET +YA ++LPAA W EKTGT+ RRV S PP
Sbjct: 426 RVKKALQQSTFTIHQDAYSPTETAEYAHLLLPAAQWSEKTGTMTNSERRVTLSPAFRSPP 485
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNV----IPALKGATPERLAKNLEG 527
GEA+PDWEI + + +G FN+ V RE + + G + E+L K L
Sbjct: 486 GEARPDWEIFAEVGRRLGFENQFNFVDSAAVHREYVQLTAERLCDQSGVSYEKLQK-LGP 544
Query: 528 CMYPCPDENTETPRLFLK------GFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRL 581
+PC + E+ L K F T++G+A + E D YPF LTN RL
Sbjct: 545 LQWPCRQSDQESQLLSTKRLYTDYKFCTENGRANFCLDHSRGLAEPVDPNYPFVLTNGRL 604
Query: 582 VGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
G +HT T + + +KK P P + ++ +DA++LGI+S DLV +++RRGS VT
Sbjct: 605 YGHWHTQTRTGHIEKIKKMHPKPILEMHPKDAEKLGIKSQDLVAIKSRRGSAQLEVLVTR 664
Query: 642 NIREGVVAMPWHWGF--------NYLTKDDAIDEFSKMPELKTAACRISKV 684
I G V MP HWGF N LT A SK PELK A I+ V
Sbjct: 665 AIAPGTVFMPMHWGFLWDDNAEVNSLTHATAC-PISKQPELKACAVNITPV 714
>pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtilis
>gi|2635168|emb|CAB14664.1| (Z99117) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 980
Score = 321 bits (814), Expect = 2e-86
Identities = 225/696 (32%), Positives = 355/696 (50%), Gaps = 30/696 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K VC +C VGC + + KI+ + N C KG + +R+
Sbjct: 264 KKTKTVCTFCGVGCSFEVWTKGRDILKIQ-PVSDAPVNAISTCVKGKFGWDFVNSKERIT 322
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
KPL R G F E SWEEA++++A + I E +G ++ F+ S + + E+NY++QK
Sbjct: 323 KPLIRKN----GAFVESSWEEALDLVASRLGSIKEQYGKGSVGFISSSKITNEENYVIQK 378
Query: 124 LARAL-GTNNVEFAGRLCQS--SNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
LAR + TNNV+ R CQS ++ + R+ GG A T DI K+ +++I G NPA
Sbjct: 379 LARQVFETNNVDNCSRYCQSPATDGLFRTVGMGGDAGT--IKDIAKAGLVIIVGANPAEG 436
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
+PVL + ++A +G KLIV D K E A+ + + + P GTD +A+ +I +
Sbjct: 437 HPVLATRV-KRAHKLHGQKLIVADLRKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQG 495
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
+D+ F+ E VN F+ ++ YT ++AE+I+G+ I + A + V+ G
Sbjct: 496 WHDQAFIDENVNYFEDYKETLKTYTLDYAERITGLSKENIIQIAEMIRDADGTCVLWGMG 555
Query: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN 360
+ Q+ GS T+ AISNL+ TGN + G + + G + A G LPG +
Sbjct: 556 VTQNTGGSDTSAAISNLLLATGNYRRPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHIT 615
Query: 361 EETAK-KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL 419
++ A+ KF E +G E+ KPGL + A+ EGK+K +Y++G++ A +N++ + + L
Sbjct: 616 DDKARAKFEEAYGVEIDGKPGLDNIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDIL 675
Query: 420 KRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDW 478
F VV DIF + T +YAD+VLPA EK GT RRV R +QA+ G+AKPDW
Sbjct: 676 SSLDFFVVQDIFLSRTAQYADVVLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDW 735
Query: 479 EIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLA---KNLEGCMYPCPDE 535
II +A LG +NYS D+ E+ ++ P A+ E L L G
Sbjct: 736 WIIQEVANR--LGANWNYSHPSDIFSEMASLSPLFAKASYEVLEGWNSFLWGSF-----T 788
Query: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
TP L+ GF KA +W P P EEY + N R++ FH G M+N++K
Sbjct: 789 GESTPLLYEDGFNFPDKKARFALSDWTEPAAFP-EEYDLHINNGRMLEHFHEGNMTNKSK 847
Query: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWH-- 653
++ + P +V I+ A+ G+ G LVR+ + G++ A +T+ +R+ + +P +
Sbjct: 848 GIQAKVPNVFVEISPELAQERGVCDGSLVRLVSPFGAVKLNALITDRVRKNELYLPMNST 907
Query: 654 ---WGFNYLTKDDAIDEFSKMPELKTAACRISKVEG 686
N+LT A D+ + P K R+ + G
Sbjct: 908 DKESAINFLT-GPAADKRTNTPAYKQTKVRMEVLGG 942
>gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus subtilis]
Length = 982
Score = 321 bits (814), Expect = 2e-86
Identities = 225/696 (32%), Positives = 355/696 (50%), Gaps = 30/696 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K VC +C VGC + + KI+ + N C KG + +R+
Sbjct: 266 KKTKTVCTFCGVGCSFEVWTKGRDILKIQ-PVSDAPVNAISTCVKGKFGWDFVNSKERIT 324
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
KPL R G F E SWEEA++++A + I E +G ++ F+ S + + E+NY++QK
Sbjct: 325 KPLIRKN----GAFVESSWEEALDLVASRLGSIKEQYGKGSVGFISSSKITNEENYVIQK 380
Query: 124 LARAL-GTNNVEFAGRLCQS--SNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
LAR + TNNV+ R CQS ++ + R+ GG A T DI K+ +++I G NPA
Sbjct: 381 LARQVFETNNVDNCSRYCQSPATDGLFRTVGMGGDAGT--IKDIAKAGLVIIVGANPAEG 438
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
+PVL + ++A +G KLIV D K E A+ + + + P GTD +A+ +I +
Sbjct: 439 HPVLATRV-KRAHKLHGQKLIVADLRKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQG 497
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
+D+ F+ E VN F+ ++ YT ++AE+I+G+ I + A + V+ G
Sbjct: 498 WHDQAFIDENVNYFEDYKETLKTYTLDYAERITGLSKENIIQIAEMIRDADGTCVLWGMG 557
Query: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN 360
+ Q+ GS T+ AISNL+ TGN + G + + G + A G LPG +
Sbjct: 558 VTQNTGGSDTSAAISNLLLATGNYRRPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHIT 617
Query: 361 EETAK-KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL 419
++ A+ KF E +G E+ KPGL + A+ EGK+K +Y++G++ A +N++ + + L
Sbjct: 618 DDKARAKFEEAYGVEIDGKPGLDNIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDIL 677
Query: 420 KRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDW 478
F VV DIF + T +YAD+VLPA EK GT RRV R +QA+ G+AKPDW
Sbjct: 678 SSLDFFVVQDIFLSRTAQYADVVLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDW 737
Query: 479 EIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLA---KNLEGCMYPCPDE 535
II +A LG +NYS D+ E+ ++ P A+ E L L G
Sbjct: 738 WIIQEVANR--LGANWNYSHPSDIFSEMASLSPLFAKASYEVLEGWNSFLWGSF-----T 790
Query: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
TP L+ GF KA +W P P EEY + N R++ FH G M+N++K
Sbjct: 791 GESTPLLYEDGFNFPDKKARFALSDWTEPAAFP-EEYDLHINNGRMLEHFHEGNMTNKSK 849
Query: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWH-- 653
++ + P +V I+ A+ G+ G LVR+ + G++ A +T+ +R+ + +P +
Sbjct: 850 GIQAKVPNVFVEISPELAQERGVCDGSLVRLVSPFGAVKLNALITDRVRKNELYLPMNST 909
Query: 654 ---WGFNYLTKDDAIDEFSKMPELKTAACRISKVEG 686
N+LT A D+ + P K R+ + G
Sbjct: 910 DKESAINFLT-GPAADKRTNTPAYKQTKVRMEVLGG 944
>pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir||S65758
nitrate reductase (EC 1.7.99.4) chain A narB -
Oscillatoria chalybea >gi|899356|emb|CAA61613.1|
(X89445) NarB protein [Oscillatoria chalybea]
>gi|1587167|prf||2206299B nitrate reductase
[Oscillatoria chalybea]
Length = 737
Score = 319 bits (810), Expect = 5e-86
Identities = 226/708 (31%), Positives = 346/708 (47%), Gaps = 41/708 (5%)
Query: 9 VCPWCSVGCRLYI---------VSVD--GYPR-KIEFDYNPKTPNKGKLCPKGVSSYQHY 56
+CP+C VGC L + V+ D GYP K++ D + ++G +C KG + +
Sbjct: 8 LCPYCGVGCGLEVSPPARSGKPVNRDSQGYPVWKVQGDREHPS-SQGMVCVKGATIAES- 65
Query: 57 VHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLE 116
+H DRL P+ R E + F +SW+EA+ I + + + + G EA+ GS + E
Sbjct: 66 LHKDRLLYPMMR--ESLDKPFRRVSWDEALNAIVNRIQTVRFTQGAEAICMYGSGQFQTE 123
Query: 117 DNYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGY 175
D Y+ QKL + LGTNN + RLC SS A + FG +DD+ + + G
Sbjct: 124 DYYVAQKLMKGCLGTNNFDANSRLCMSSAVAAYIQSFGSDGPPCCYDDLDLTDCAFLVGT 183
Query: 176 NPAATNPVLFGQYFEKAILDNG-AKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLH 234
N A +P++F + + +NG K++VVDP +T TA+ A +HL PGTD+ + M +
Sbjct: 184 NTAECHPIIFNRLRKHHKKNNGKVKMVVVDPRRTATAEAADLHLAIKPGTDIDLFNGMAY 243
Query: 235 VIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNAT 294
++++ D F+ E +NF A + Y PE + G+ + AA +A
Sbjct: 244 LLMRWGKIDTIFIDECTSNFPAYCEVIRHYPPEVVARKCGITVEELETAARYWAESERVL 303
Query: 295 VVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLP 354
+ + GINQ + G+ A + NL +T IGK G + G + G LP
Sbjct: 304 SLWSMGINQSSEGTAKARTLINLHLMTAQIGKPGAGPFSLTGQPNAMGGREAGGLSHLLP 363
Query: 355 G-PVPLNEETAKKFSELWGFEV---PSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLA 410
G V N + + WG V + GL + + GK+ ++I NPA S+
Sbjct: 364 GYRVVKNARHRSEVEKFWGLPVGRIAPERGLTVWEMILGLEMGKVGLVWIAATNPAVSMP 423
Query: 411 NSSKIEEALKRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAV 468
+ + ++AL R+ F V D + PTET YA ++LPAA W EKTG + RR+
Sbjct: 424 DLERTKKALSRSPFTVYQDAYYPTETANYAHVLLPAAQWSEKTGVMTNSERRITLCQAFR 483
Query: 469 KPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALK----GATPERLAKN 524
PGEAK DWEI + + +G E FN+++ +V E + G +RL +
Sbjct: 484 DRPGEAKADWEIFAEVGRRLGFVEQFNFANSAEVYAEFTQLTKGRPCEQTGIGHQRLGAD 543
Query: 525 LEGCMYPCPDENTET--PRLFLK-GFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRL 581
+PCP+E E RL+ F T G+A+ + E PD ++PF LTN RL
Sbjct: 544 -GPLQWPCPEEAGENNAARLYTDLRFHTPDGRAKFAAYHSRGLAEPPDPDFPFVLTNGRL 602
Query: 582 VGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
G +HT T + R + K+ P P++ I+ RDA +LGI D V V +RRG A+VT+
Sbjct: 603 YGHWHTLTRTGRIEKTKQMHPQPFIEIHPRDAGKLGIEDEDWVEVRSRRGMARFPAKVTK 662
Query: 642 NIREGVVAMPWHWG--------FNYLTKDDAIDEFSKMPELKTAACRI 681
I G V +P HWG N +T ++ + S PELK A ++
Sbjct: 663 AIAPGTVFVPMHWGELWADSAEANAMTHPESCPD-SLQPELKACAVQL 709
>gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechococcus PCC7002]
Length = 742
Score = 311 bits (788), Expect = 2e-83
Identities = 228/733 (31%), Positives = 344/733 (46%), Gaps = 54/733 (7%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSV--DGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVH 58
M ++ +CP+C VGC L + V + P + GK+C KG + + +
Sbjct: 1 MDQRKTKTLCPYCGVGCGLEVSEVIKNEQPTLKVMGDRQHPSSLGKVCVKGATIAES-LD 59
Query: 59 PDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDN 118
DRL P+ R + +F+ ISW++A E+I ++ K + + G E +A GS + ED
Sbjct: 60 QDRLLYPMYR--RSLQDQFQRISWDDAFELIVEQIKTVKATLGSEGIAMYGSGQLQTEDY 117
Query: 119 YLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNP 177
Y QKL + LGTNN + RLC SS + FG ++D+ + I G N
Sbjct: 118 YTAQKLLKGCLGTNNFDANSRLCMSSAVAGYIQSFGADGPPPCYEDLELTDCAFIIGSNT 177
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A +P++F + E AKLIVVDP +T+TA+ A +HL PGTD+ + + H+++
Sbjct: 178 AECHPIVFNRLREHHKRSK-AKLIVVDPRRTKTAEVADLHLAIKPGTDIDLLNGIAHLLL 236
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVL 297
K D F+ E F A ++ YTPE + G+ + +AA +A N +
Sbjct: 237 KWGKIDTLFIDECTKGFSKYAMLIQSYTPETVARRCGIRIDHLEQAAKYWANADNVLSLW 296
Query: 298 NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG-- 355
+ G+NQ A G+ + NL +TG IGK G + G + G LPG
Sbjct: 297 SMGMNQSAEGTAKVRTLINLHLMTGEIGKPGAGPFSLTGQPNAMGGREAGGLAHLLPGYR 356
Query: 356 --PVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSS 413
P + T +K +L + PG A+ + + G + ++++ NPA S+ +
Sbjct: 357 LVKNPEHRATLEKAWQLPPGTISPLPGKDAWAMIEGLDMGTVGLLWVVATNPAVSMPDLE 416
Query: 414 KIEEA-LKRAFVVVAD-IFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP 471
+ + A LK F + D +PTET+ YA ++LPA W EKTG + R V Q P
Sbjct: 417 RTKAALLKSPFTICQDAYYPTETSNYAHLLLPALQWGEKTGAMTNSERVVTYCPQFRDRP 476
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIP----ALKGATPERLAKNLEG 527
GEA DWEI + + +G + F S +V E + + G + +RLA EG
Sbjct: 477 GEAWADWEIFAEVGRRLGFQQQFRAVSSAEVYAEFVQLTGDRPCDMTGLSHQRLA--TEG 534
Query: 528 -CMYPCPDENTE------------TPRLF-----LKG--------FPTKSGKAELIPVEW 561
+PCP T+ +LF LKG F T G+A
Sbjct: 535 PIQWPCPANETKCDPETTADNRGLLQKLFHQDEPLKGKRLYTDRRFHTPDGRARFAAYHS 594
Query: 562 KPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
+ E P+ +YPF LT RL G +HT T + R K ++K P P++ I+ RDA RL I G
Sbjct: 595 RGLAEPPNTDYPFVLTIGRLYGHWHTMTRTGRIKKIQKMHPNPFLEIHPRDADRLSITDG 654
Query: 622 DLVRVETRRGSLVARAEVTENIREGVVAMPWHWG--------FNYLTKDDAIDEFSKMPE 673
++V V + RG A +T+NI G V P HWG N L+ +A + S PE
Sbjct: 655 EMVEVRSPRGMARFPALITKNITPGTVFAPMHWGALWGEDTEANALSHAEACPD-SLQPE 713
Query: 674 LKTAACRISKVEG 686
LK A + K+ G
Sbjct: 714 LKACAVNVQKITG 726
>gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sulfolobus
solfataricus]
Length = 657
Score = 307 bits (779), Expect = 2e-82
Identities = 226/682 (33%), Positives = 342/682 (50%), Gaps = 38/682 (5%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
+CP+C VGC L + + ++ ++G +C KG + + DRL PLKR
Sbjct: 7 ICPFCGVGCGLDFYVENNFIFRVS-PSQEHIVSRGHVCGKGAVASEVIYAWDRLTYPLKR 65
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARAL 128
V + F +W+EAI IA K KEI +G EA+AF G + +LE+ Y KLARAL
Sbjct: 66 VKDT----FVRTTWDEAISDIASKLKEIRSKYGSEAIAFYGGCQNTLEEGYSFMKLARAL 121
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQY 188
GTNNV+ R+C + +A ++ G A + +I+ ++ I+I G + ++PVL QY
Sbjct: 122 GTNNVDSCARVCHEPSAMALKELVGIGASSVTVSEILNARNIVISGESVTDSHPVL-SQY 180
Query: 189 FEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVA 248
+A G K++V+DP T TA+ A + LQ GTD+ + A+ + +I LYD FV
Sbjct: 181 LVEA-KRKGVKIVVIDPRMTGTARIADLFLQISSGTDIYLYNAVANYLISNGLYDSKFVK 239
Query: 249 ERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGS 308
ERV NFD V+ YT E AE+I+ V I E A + A N +L+ G+ +
Sbjct: 240 ERVENFDEFREIVKSYTIEEAERITSVSKDKIIEFARIIA---NKPTILSWGLGLTQSSG 296
Query: 309 ITAM-AISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPV---PLNEETA 364
+ A+ A NL +TGN+G G V G V G P P+NEE A
Sbjct: 297 VNAVKAYINLALLTGNVGINGGGLLVYRGQ-----TNVQGSGDLIKPDVFPNGPMNEENA 351
Query: 365 KKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR-AF 423
K+ S++WGF P K GL F + + +K +++M NPA SL N K+ + LK
Sbjct: 352 KELSKIWGFVPPIKKGLSITEAF--LRDSNVKALFLMNYNPAFSLPNRYKVIKFLKSLEL 409
Query: 424 VVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVM 483
+VV D F TET KYA VLP W EK G+V +R V F+ V PPGE + + II
Sbjct: 410 LVVMDPFMTETAKYAHYVLPTPLWAEKEGSVTNLDRTVKWRFKVVDPPGEVRSELWIIKR 469
Query: 484 LAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLF 543
+A+ +GL + + + V +EI V T + L YP + + L+
Sbjct: 470 IAEKLGLTGFHDDPKL--VFKEIKEVAKLYSNLTLDELMDYSVDSRYPDHESS-----LY 522
Query: 544 LKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPG 603
F T SGKA+ V + E+ + Y L R+V ++++ + R +
Sbjct: 523 KDRFMTPSGKAKFGLVRY---NEISGDSY--ILITGRVVTRYNSDELIKRVPGYRNF--S 575
Query: 604 PYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWH-WGFNYLTKD 662
++IN DA +L I+ GD+V+V ++ G V +A++T ++ G H + N + D
Sbjct: 576 SDLLINPEDATKLNIKDGDMVKVVSKCGMAVMKAKLTNEVKVGHTFAYMHDYYVNNVVCD 635
Query: 663 DAIDEFSKMPELKTAACRISKV 684
D +D+ SK P K +I K+
Sbjct: 636 D-LDDISKTPRYKITFVKIEKL 656
>sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 nitrate reductase (EC
1.7.99.4) chain A - Synechococcus sp. (strain PCC 7942)
>gi|397158|emb|CAA52675.1| (X74597) nitrate reductase
[Synechococcus sp.]
Length = 729
Score = 302 bits (766), Expect = 7e-81
Identities = 224/708 (31%), Positives = 336/708 (46%), Gaps = 44/708 (6%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP------------NKGKLCPKGVSSYQHY 56
+CP+C VGC L V P + TP ++G +C KG + +
Sbjct: 22 LCPYCGVGCGLEAVP-PAQPGRATVRDREGTPIWQIRGDRQHPSSQGMVCVKGATVAES- 79
Query: 57 VHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLE 116
V RLK P+ R + F EISW+EA++ + + ++ +G + + F GS + E
Sbjct: 80 VSKSRLKYPMFRASL--DDPFTEISWDEALDRLCDRIQQTQADYGKDGICFYGSGQFQTE 137
Query: 117 DNYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGY 175
D Y+ QKL + LGTNN + RLC SS A S G ++D+ + +LI G
Sbjct: 138 DYYIAQKLVKGCLGTNNFDTNSRLCMSSAVSAYSLCLGSDGPPACYEDLDLADCLLIVGS 197
Query: 176 NPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHV 235
N A +P+LF +Y K G LIVVDP T TA+ A +HL PG+D+A+ + +
Sbjct: 198 NTAECHPILFNRY-RKRHKQGGTNLIVVDPRCTPTAEVADLHLALKPGSDVALLNGLGWL 256
Query: 236 IIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATV 295
+ + KDF+A + F+ +E Y P+ +++G+ + + AA L A+
Sbjct: 257 LYQMGYVKKDFIANQTEGFEDWLAIIEDYPPQRTAELTGLAVAELVRAADLIASAQRWLS 316
Query: 296 VLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG 355
+ + G+NQ G+ A ++ NL +T IG G + G + G LPG
Sbjct: 317 LWSMGVNQSIQGTAKATSLINLHLLTRQIGLPGCGPFSLTGQPNAMGGRETGGLAHLLPG 376
Query: 356 -PVPLNEETAKKFSELWGFEVPS---KPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLAN 411
++ + +WG + S +PG + + + +G + +++ NPA SL +
Sbjct: 377 YRKVIDPQHRADVETIWGLPMGSISPQPGRTAWQMIEGLEQGAVGFLWVAATNPAVSLPD 436
Query: 412 SSKIEEALKRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVK 469
+ + ALKR+ F V+ D + PTETT YA ++LPAA W EKTGT+ RRV +
Sbjct: 437 VKRAQAALKRSPFTVLQDAYHPTETTTYAHLLLPAAQWSEKTGTMTNSERRVTLCQAFRQ 496
Query: 470 PPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPA----LKGATPERLAKNL 525
PPGEA+ DW+I + + +G F+Y+ V E V L G + E LA+
Sbjct: 497 PPGEARADWQIFAEVGRRLGFA--FDYTDAAAVFAEYVQVTAGRLCDLSGLSHELLAQ-A 553
Query: 526 EGCMYPCP---DENTETPRLFLKG-FPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRL 581
+P P + TE+ RL+ K F G+A P E PD+ YP LT RL
Sbjct: 554 GPQQWPFPAGAEPTTESKRLYTKHHFAYADGRARFQPFHHLGVAEPPDDRYPLVLTVGRL 613
Query: 582 VGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
+HT T + R + K P +V I+ RDA R I G V + +RRG A+VT
Sbjct: 614 YPDWHTQTRTGRIDKINKLHPSAFVEIHPRDADRYNISEGQAVVIRSRRGEGCFPAKVTT 673
Query: 642 NIREGVVAMPWHWG--------FNYLTKDDAIDEFSKMPELKTAACRI 681
I GV+ +P HWG N LT A S PELK A +I
Sbjct: 674 AISPGVLFVPMHWGALWGDRTEANALTHPAAC-PISGEPELKACAVQI 720
>gb|AAB40292.1| (L49163) narB [Anabaena PCC7120]
Length = 746
Score = 302 bits (765), Expect = 9e-81
Identities = 212/725 (29%), Positives = 340/725 (46%), Gaps = 57/725 (7%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDY--NPK---------TPNKGKLCPKGVSSYQHYV 57
+CP+C VGC L + + D NP ++G +C KG + + +
Sbjct: 8 LCPYCGVGCGLEVTPPAQLNKATNRDSQGNPTWRVRGDKAHPSSQGMVCVKGATIAES-L 66
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLED 117
+RL P+ R E + +F +SW+EA ++I K+ + + + G EA+ GS + ED
Sbjct: 67 DKNRLHYPMVR--ESLDQEFRRVSWDEAFDLITKRIQSVRFTQGAEAICMYGSGQFQTED 124
Query: 118 NYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYN 176
Y+ QKL + LG+NN + RLC SS + FG ++D+ + + G N
Sbjct: 125 YYIAQKLMKGCLGSNNFDANSRLCMSSAVSGYIQSFGADGPPCCYEDLELTDCAFLIGTN 184
Query: 177 PAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVI 236
A +P++F + + ++ K+IVVDP +T TA+ A +HL PGTD+ + + H++
Sbjct: 185 TAECHPIVFNRLEKYHRKNHKVKMIVVDPRRTPTAEAADLHLAIKPGTDIDLLNGIAHLL 244
Query: 237 IKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVV 296
++ + D F+ + NF A A + Y+PE + G+ + A+ + +
Sbjct: 245 MRWNMIDVGFIDDCTRNFSAYAEVIRHYSPEVVARQCGITIEDLETASRYWGESQRVLSL 304
Query: 297 LNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG- 355
+ G+NQ + G+ I NL +TG +GK G + G + G LPG
Sbjct: 305 WSMGVNQSSEGTAKVRTIINLHLMTGQVGKPGAGPFSLTGQPNAMGGREAGGLAHLLPGY 364
Query: 356 PVPLNEETAKKFSELWGF---EVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANS 412
+ N + + WGF ++ PGL + + +G + ++I NPA S+ +
Sbjct: 365 RLVKNPQHRAELEAFWGFQPGQISPHPGLTAWDMITGLEDGNVGLLWIAATNPAVSMPDL 424
Query: 413 SKIEEALKRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKP 470
+ ++AL R+ F + D + PTETT YA ++LPAA W EKTG + RRV +P
Sbjct: 425 ERTKKALLRSPFTIYQDAYHPTETTAYAHVLLPAAQWGEKTGIMTNSERRVTLCQAFRQP 484
Query: 471 PGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPA----LKGATPERLAKNLE 526
P EAKPDWEI + + +G + F +++ V E + + G + ++L
Sbjct: 485 PREAKPDWEIFAEVGRRLGFEDKFAFTNSAQVYAEFTQLTKGRPCDMSGISHQQLQAQ-G 543
Query: 527 GCMYPCPDENTET---------------------PRLFLK-GFPTKSGKAELIPVEWKPP 564
+P N ET RL+ F T G+A K
Sbjct: 544 PTQWPHSSINIETQKPTQHPTVNSQQSTVTSQQSKRLYTDLRFHTPDGRARFGAYYSKGL 603
Query: 565 GEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLV 624
E PD YPF LT RL G +HT T + R + ++ P P++ I+ RDA +LGI +V
Sbjct: 604 AEPPDPSYPFVLTTGRLYGHWHTQTRTGRIEKIRAMHPEPFIEIHPRDAAKLGITDNVVV 663
Query: 625 RVETRRGSLVARAEVTENIREGVVAMPWHWG--------FNYLTKDDAIDEFSKMPELKT 676
V +RRGS A+VT+ I G V +P HWG N LT ++ + S PELK
Sbjct: 664 EVRSRRGSAKFPAKVTKAISPGTVFVPMHWGKLWADDAEANALTHSESCPD-SLQPELKA 722
Query: 677 AACRI 681
A ++
Sbjct: 723 CAVQL 727
>pir||T35003 probable respiratory chain oxidoreductase - Streptomyces coelicolor
>gi|4007679|emb|CAA22365.1| (AL034443) putative
respiratory chain oxidoreductase [Streptomyces
coelicolor A3(2)]
Length = 642
Score = 300 bits (759), Expect = 5e-80
Identities = 218/643 (33%), Positives = 328/643 (50%), Gaps = 40/643 (6%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL PL R + E +WEEA++ A+ + G + A R + E NY+
Sbjct: 13 RLTHPLVR--DSREAPLRRATWEEALDRTARGLTAARGAFGMFSCA-----RATNEMNYV 65
Query: 121 LQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAA 179
QK AR +GT+NV+ R C + + S FG T+ +++I + VI++WG N
Sbjct: 66 AQKFARVVMGTHNVDSCNRTCHAPSVAGLSAAFGSGGGTSSYEEIEHTDVIVMWGSNARF 125
Query: 180 TNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKE 239
+P+ F Q+ K I GA++ VVDP +T TA++A L P GTD+ +A A+ II
Sbjct: 126 AHPIFF-QHVLKGIR-GGARMYVVDPRRTSTAEWAESWLGPNVGTDIPLAHAVGREIIHA 183
Query: 240 ELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNE 299
L ++ F+ +D VE +T AEK++GVPA+ I E A +A A +
Sbjct: 184 GLANEAFIERATTGYDDYKALVEPWTLSLAEKVTGVPAAAIRELAHAYARAERAQLCWTL 243
Query: 300 GINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVP- 358
GI +H NG+ A+ NL +TG++G+ G SG+ P G G + +P +P
Sbjct: 244 GITEHHNGTDNVRALINLSLLTGHVGRYG--SGLQPLR--GQNNVQGGGDMGAIPNRLPG 299
Query: 359 ----LNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSK 414
L+ E +KF W V GL +F+AM EG ++ +Y +G+NPA+S A++
Sbjct: 300 FQDVLDPEVRRKFETAWDTVVEPHHGLTLTEMFEAMDEGTLRAVYCIGENPAQSEADA-- 357
Query: 415 IEEALKRA----FVVVADIFPTETTKYADIVLPA-AAWYEKTGTVITQNRRVMRSFQAVK 469
E+A++R F+VV DIF T+T + AD+VLPA A W E GT RRV R +AV
Sbjct: 358 -EQAVRRLRALDFLVVQDIFLTKTAELADVVLPATAGWAETEGTTTNSERRVQRVRRAVS 416
Query: 470 PPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCM 529
PPGEA+ D +I+ LA LG + Y+ + V E+ ++ P G T RL ++ +G
Sbjct: 417 PPGEAREDIDILCDLAAR--LGHDWKYADAEAVWNELRSLSPDHHGMTYARLEEH-QGIQ 473
Query: 530 YPCPDENTETP-----RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQ 584
+PCP P RL+ + ++ A V PP ++ DE+YP LT R +
Sbjct: 474 WPCPSTQELEPTYLHGRLWAQDPASRGRLAPFGIVRHDPPVDLTDEQYPIRLTTGRRLDS 533
Query: 585 FHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR 644
++TG S S +R G V + DA+R G+ G+ VRV +RRGSL+A V +R
Sbjct: 534 YNTGVQSGGYASPLRR--GESVELCPEDAERYGVVVGEEVRVTSRRGSLLAPVWVDTALR 591
Query: 645 EGVVAMPWHWGFNYLTKDDAID---EFSKMPELKTAACRISKV 684
G+ M +H+ T I+ + E K +A RI KV
Sbjct: 592 PGLAFMSFHFPDEVDTNQLTIEANCPIAGTAEFKASAIRIEKV 634
>pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquifex aeolicus
>gi|2982925|gb|AAC06542.1| (AE000678) nitrate reductase
narB [Aquifex aeolicus]
Length = 666
Score = 280 bits (708), Expect = 4e-74
Identities = 212/677 (31%), Positives = 326/677 (47%), Gaps = 39/677 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
CP+C VGC LYI K++ D+ N G +C K + ++ R+ KP+ R
Sbjct: 6 CPYCGVGCGLYI----NEKGKVKGDFEHPA-NLGDICKKPLY-LPKVLNRGRIAKPMYR- 58
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA-L 128
E F EISWEEA EI+ KE L S P+ F S + ED Y+ K + L
Sbjct: 59 -ENKSHSFREISWEEAYEIL----KEKLISFSPDETYFYLSGQLLTEDIYVANKFVKGFL 113
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQY 188
TNNV+ RLC +S A FG ++D+ + L G N A +PVLF +
Sbjct: 114 RTNNVDANSRLCMASAVTAYKLAFGSDGVPCTYEDVDDADAFLFIGSNAAVAHPVLFKRV 173
Query: 189 FEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVA 248
++ + ++ VDP++TETAK + + +Q GTD ++L+V+ KE D F+
Sbjct: 174 LKRRKEEEKVIIVTVDPLETETAKRSDVFIQIKAGTDTVFLNSVLYVLHKEGWIDYRFIY 233
Query: 249 ERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGS 308
F+ K+ P+ A I V ++ A LFA +G+NQ NG+
Sbjct: 234 NYTEGFEEALEVAMKFPPDVAASICSVKPEDVYLVAELFAHSKKLISFWCQGLNQSLNGT 293
Query: 309 ITAMAISNLIAITGNIGKEGV-FSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKF 367
+ +A+ NL TG + ++G FS + G + G LPG + + + F
Sbjct: 294 MKNLALINLHLATGRLNEKGCPFS--LTGQPNAMGGREVGYLTNGLPGYRDVRNKADRAF 351
Query: 368 SE-LWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFVV 425
E WG + + +PG D +L+ +IK ++++ NPA SL N K++ AL++ F+V
Sbjct: 352 MEKFWGVKGIKKEPGPTITEAIDMILKDRIKFLWVVCTNPAVSLPNLEKVKRALEKVFLV 411
Query: 426 VADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLA 485
V D + +T ++A+++LPAA EK G + +R V + +P GE+KPDW I LA
Sbjct: 412 VQDAYWNDTCEFANLILPAAQLGEKEGVMTGSDRTVTFCERFSEPFGESKPDWLIFTELA 471
Query: 486 KSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLF-- 543
+ +G E F YSS ++ E K +T RL ++ Y L+
Sbjct: 472 RKMGAEELFPYSSPKEIFEE-------FKASTKGRLC-DMSNLSYENLPARWGKRWLYED 523
Query: 544 LKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPG 603
LK FPT+SGKA P +V EE F L RL +HT T + ++ L K
Sbjct: 524 LK-FPTESGKARFHPAR----VDVAAEEGMFILLTGRLKNNWHTMTRTGKSPELLKGEIP 578
Query: 604 PYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNY----- 658
P+V++N RDA+ LGI G+ V + + +G + R N++ G + P+ + Y
Sbjct: 579 PFVIMNPRDAEELGIEEGEEV-ILSAKGKEITRVVRFGNVKRGHIFAPFGYPSEYGEPTN 637
Query: 659 LTKDDAIDEFSKMPELK 675
L D D +SK P+LK
Sbjct: 638 LLTSDRTDPYSKEPDLK 654
>gi|11498802 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483878|pir||B69400
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2649381|gb|AAB90041.1| (AE001021) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 741
Score = 272 bits (687), Expect = 1e-71
Identities = 216/683 (31%), Positives = 321/683 (46%), Gaps = 54/683 (7%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPD 60
M+E ++ C C GCR+ + G IE D P + +G +CPKG++S + +P
Sbjct: 36 MSEHVVKTTCKSCHGGCRVLVKVKSGKIVHIEGD--PSSLTRGTMCPKGLASIKEVYNPS 93
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RLK PLKRVGE+GEG+++ ISW+EA++ IA+K KE +E +GP ++ L + N
Sbjct: 94 RLKYPLKRVGERGEGEWKRISWKEALDTIAEKMKEYIEEYGPSSI--LIGQGTGRGYNRY 151
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFD-DIVKSKVILIWGYNPAA 179
+ AR++G+ NV C + A GG + K I+ WG
Sbjct: 152 TFRFARSIGSPNVLLPAHFCYAPRLAAFGITVGGRLYCDYHGWGGEYPKTIVHWGKQLEY 211
Query: 180 TNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKE 239
TN + L+ I+VDP T A A + L PGTD A+AL ML+VII E
Sbjct: 212 TNADGEMAVWFLRALEEAEHFILVDPKATPVAHRADLWLPVRPGTDAALALGMLNVIISE 271
Query: 240 ELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNE 299
ELYDKDFV + + FD L VE+Y+P+ +I+ VP I AA FAT + + +
Sbjct: 272 ELYDKDFVEQWTHGFDRLRERVEEYSPDKVSRITWVPEDKIKLAAEWFATSRPGCIQIGQ 331
Query: 300 GINQHANGSITAMAISNLIAITGNIGKEGVFSGVIP---GAHCGLCAAVPGVNCAQLPGP 356
+ N T AI L+A+TGNI + G +P G VP P
Sbjct: 332 ALEAGNNSIQTLRAIICLMAVTGNIERPGGMVNWVPPETGEMEEFALEVPP------PEE 385
Query: 357 VPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG--KIKGIYIMGQNPARSLANSSK 414
+P+ + K + +P H++++ + +L G +IK +++ G NP + ANS
Sbjct: 386 LPIGADRYKLLA------LPPFAMCHFESVCEDLLNGERRIKMMHLQGTNPVLAYANSKD 439
Query: 415 IEEALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRR--VMRSFQAVKPP 471
+ +AL F+ V D++ + T KYADIVLPAA W E T + + R V +AV+P
Sbjct: 440 VLKALLNVEFISVVDLYMSPTAKYADIVLPAAHWLE-TDDIYDMHPRFFVSAIVRAVEPV 498
Query: 472 GEAKPDWEIIVMLAKSIGLGEYFN--YSSVDDVLREINNVIPALKGATPERLAKNLEGCM 529
GEA PD I L K + +F+ Y ++ LR+ K LA+ +
Sbjct: 499 GEALPDNVIFNELGKRLAPKYWFSDVYEMLNYQLRKAGITWEEFKEIGV--LARTGKEHY 556
Query: 530 YPCPDENTETPRLFLKGFPTKSGKAELIPV-----------EWKPPGEVP------DEEY 572
Y GFPT +GK EL ++ P E P E+Y
Sbjct: 557 YKYKTNYWREG----GGFPTPTGKIELYSTILENLNYDPLPHYREPNESPYSTPELSEKY 612
Query: 573 PFWL-TNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRG 631
P L T R+ FH+ N L++ P P +I+ A++ GI+ GD + +ET RG
Sbjct: 613 PLILSTGGRVPYYFHSQYRQN--PWLRELQPDPVALIHPETAEKYGIKDGDWIWIETPRG 670
Query: 632 SLVARAEVTENIREGVVAMPWHW 654
+ RA + E + V W
Sbjct: 671 RIRQRARLFEAMNPRYVFAQASW 693
>dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [Clostridium
perfringens]
Length = 692
Score = 268 bits (678), Expect = 1e-70
Identities = 201/701 (28%), Positives = 353/701 (49%), Gaps = 32/701 (4%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRL 62
K I C +C++ C L + DG +++ P P NKG C KG++ + +
Sbjct: 2 KRIQSTCNYCALACNLDFYTEDGKIKRVV--PTPHYPVNKGFSCIKGLNLDKQCTKFNGS 59
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
KKPL ++ + G+ + I W+EA ++ A K I E +G E++A++ + + E+ LL
Sbjct: 60 KKPLLKMKD---GERKAIEWKEAFDLFASKMTAIQEKYGKESVAYISTGQLPTEEMALLG 116
Query: 123 KLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
+ R+ N + RLC +S VA + FG A D+ S I G NP +P
Sbjct: 117 HVGRSYMGINGDGNTRLCMASAVVAYKQSFGFDAPPYTLKDLELSDTIFFIGANPVIAHP 176
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
+ +G+ + + AK+I +DP K+ETA + + + DLA+ + +V+I++
Sbjct: 177 IAWGRVRK----NKDAKIITIDPRKSETAMNSDMWIDIKTKGDLALFYTLANVLIEKGWI 232
Query: 243 DKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGIN 302
++D++ F+ V+KYT E E+ +G+ + E A + G + G+N
Sbjct: 233 NQDYINNYTEGFEDFKAHVKKYTLEDVEERTGISKMRVLELAKIIHEGKRVSFWWTMGVN 292
Query: 303 QHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEE 362
Q TA AI NL ITGN+G+EG + + G + + + A G N+E
Sbjct: 293 QSYEAVRTAQAIINLALITGNMGREGTGANSLTGQCNAMGSRMFSNTTALYGGGEYNNKE 352
Query: 363 TAKKFSELWGFE---VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL 419
K +++ G + +P+KP L Y+ I + +G+IKG++++ NP S +N+ + ++A+
Sbjct: 353 RRKVVADILGMDENMLPTKPTLDYEQIIKGINKGEIKGLWVVCTNPRHSFSNNEEFKKAM 412
Query: 420 KRA-FVVVADIF-PTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD 477
K F VV DI+ T+++K D+ LP+ +K G +I RR+ ++ + D
Sbjct: 413 KNLDFFVVQDIYEDTDSSKECDLYLPSVPAIKKEGFLINTERRLSALVPVLEKEEDELSD 472
Query: 478 WEIIVMLAKSIGLGEYFN-YSSVDD---VLREINNVIPA-LKGATPERLAKNLEGCMYPC 532
+EI++ + +++G+G + + + +D +LRE + +P + G + ERL ++ +G +PC
Sbjct: 473 YEILLGIGEALGMGSLLDKWRTPEDAFKLLRECSKGMPCDITGVSYERL-RDSKGIQWPC 531
Query: 533 ---PDENTETPRLFLKG-FPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFR-LVGQFHT 587
+ ++ RLF G + T SGKA+ I + +EE+PF L R VGQ+HT
Sbjct: 532 RKGEELESDERRLFEDGKYYTPSGKAKFIFEDVTENPNATNEEFPFNLNTGRGTVGQWHT 591
Query: 588 GTMSNRTKSLKK-RWPGPYVMINERDAKRLGIRSGDLVRVETRRG---SLVARAEVTENI 643
T + +++ YV IN +DA++L I+ D V + + G +AR +T+N+
Sbjct: 592 HTRTREIQAVTNIVSQKAYVDINRKDAEKLDIKENDEVLIHSSNGHTSKFIAR--LTDNL 649
Query: 644 REGVVAMPWHWGFNYLTKDDAIDEFSKMPELKTAACRISKV 684
+E + P H+ L D +SK P KT I KV
Sbjct: 650 KEKTLYAPIHYIETNLLTPSVFDPYSKEPSYKTVQVNIEKV 690
>emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coelicolor A3(2)]
Length = 819
Score = 257 bits (651), Expect = 2e-67
Identities = 177/537 (32%), Positives = 270/537 (49%), Gaps = 19/537 (3%)
Query: 7 PVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKP 65
P CP+C++ C + + V+G +E P N+G LC KG ++ RL P
Sbjct: 13 PTHCPYCALQCGMNLTPVEG--GTVEVSERTDFPVNRGALCGKGRTAAAVLAPGARLTSP 70
Query: 66 LKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
L R G+G W+EA++ IA + +G +AL G + E Y L K A
Sbjct: 71 LVR---SGDGALVPAGWDEALDRIAGNLERTRARYGADALGVFGGGGLTNEKAYALGKFA 127
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFG-GPAQTNPFDDIVKSKVILIWGYNPAATNPV 183
R LGT+ +++ GR C SS A ++ FG P +D+ ++ +++ G NPA T P
Sbjct: 128 RVVLGTSQIDYNGRFCMSSAAAAGTRAFGLDRGLPFPLEDVPRTGCVILVGSNPAETMPP 187
Query: 184 LFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
+ E + +NG LIVVDP +T+TA+ A +HL P PGTDLA+AL MLH+++ E D
Sbjct: 188 SLRYFTE--LRENGGTLIVVDPRRTKTAEQADLHLAPRPGTDLALALGMLHLVVAEGRVD 245
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
+ +V ER + ++ A + PE+ E+I+GV + EA LF A V+ G Q
Sbjct: 246 EAYVEERTSGWEEARAAAMAHWPEYVERITGVSVPELREAVRLFCAPEAAMVLTARGPEQ 305
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEET 363
A G+ T A NL TG G+ G + G G G QLPG L +
Sbjct: 306 QAKGTDTVGAWINLCLATGRAGRPLSGYGCLTGQGNGQGGREHGQKADQLPGYRKLTDPA 365
Query: 364 AKK-FSELWGFEVPSKPGLHYQA--IFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALK 420
A++ +E+WG + + PG A + DA L ++ + +MG NP S ++ +E L+
Sbjct: 366 ARRHVAEVWGVDPDALPGPGRSAYELLDA-LGTDVRSLLVMGSNPVVSAPRAAHVEGRLR 424
Query: 421 RA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWE 479
F+ V D+ +ET + AD+VLP W E+TGT + RV+ +A+ PP + D E
Sbjct: 425 SLDFLAVCDVVLSETAELADVVLPVTQWAEETGTTTSLEGRVLLRRRAITPPDGVRGDLE 484
Query: 480 IIVMLAKSIGLGEYF--NYSSVDDVLREINNVIPA-LKGATPERLAKNLEGCMYPCP 533
++ LA +G+ + F + V + LR + PA G RLA+ G +PCP
Sbjct: 485 VLHGLAGRLGVQKGFPTDPEEVFEELRRASAGGPADYSGIDYRRLAEE-NGVFWPCP 540
Score = 118 bits (294), Expect = 2e-25
Identities = 64/149 (42%), Positives = 82/149 (54%), Gaps = 3/149 (2%)
Query: 539 TPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLK 598
TPRLFL F T G+A PV +P E PD+EYP LT R+V Q+ +G + R L
Sbjct: 669 TPRLFLDRFATDDGRARFAPVTHRPSAEEPDDEYPVLLTTGRVVSQYQSGAQTRRVAELN 728
Query: 599 KRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHW---G 655
PGP+V ++ R A RLG GD + V +RRG VA A +T IR V MP+HW G
Sbjct: 729 AAAPGPFVELHPRLAARLGAADGDPLAVVSRRGRAVAPARITTGIRPDTVFMPFHWPGEG 788
Query: 656 FNYLTKDDAIDEFSKMPELKTAACRISKV 684
+ A+D S+MPE K A R+ V
Sbjct: 789 RANTLTNPALDPTSRMPEFKVCAVRVETV 817
>gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsiella oxytoca]
Length = 866
Score = 256 bits (648), Expect = 5e-67
Identities = 191/694 (27%), Positives = 308/694 (43%), Gaps = 37/694 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
CP+C VGC + + D N G+LC KG + + R+ P
Sbjct: 8 CPYCGVGCGVIASRAPHGQVSVRGD-EQHPANFGRLCVKGAALGETVGLEGRMLFP---- 62
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA-L 128
E E +W +A+ + +EI++ HGP+A+AF S + ED Y KL + +
Sbjct: 63 ----EVDGERATWPQALAAAGSRLREIIDRHGPQAVAFYASGQLLTEDYYAANKLMKGFI 118
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQY 188
G N++ RLC SS + G ++D+ S ++++ G N A +PVL+ Q
Sbjct: 119 GAANIDTNSRLCMSSAVTGYKRALGADVVPCSYEDVENSDLVVLVGSNAAWAHPVLY-QR 177
Query: 189 FEKAILDNGA-KLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFV 247
+A DN +++V+DP +T T A HL PG+D + + +L+ I DF
Sbjct: 178 LAQAKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASGAISDDF- 236
Query: 248 AERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANG 307
N+ + + + + G+P I + F A + GINQ A+G
Sbjct: 237 ----NDAQRALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASG 292
Query: 308 SITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKF 367
S AI N+ G G+ G + G + G L + + ++
Sbjct: 293 SDKCNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLRRL 352
Query: 368 SELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA-FVV 425
+ WG E + PGL +F A+ G++K ++IMG NP SL +S + EAL R V+
Sbjct: 353 ARFWGSERLAQTPGLTGVELFAAIGRGEVKAVWIMGTNPVVSLPDSHAVSEALARCPLVI 412
Query: 426 VADIFP-TETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVML 484
++D+ T+T ++A I PA AW EK+GTV RR+ R + PPGEA+ DW I+ +
Sbjct: 413 ISDVVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISRQRAFMPPPGEARADWWIVARV 472
Query: 485 AKSIGLGEYFNYSSVDDVLRE-------INNVIPALKGATPERLAKNLEGCMYPC--PDE 535
A+++G G F + +V E N+ A L++ + P P
Sbjct: 473 AEALGFGSAFAWQHPHEVFSEHAALSGYENDGQRAFDIGGLADLSREAWDALEPVRWPVS 532
Query: 536 NTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTK 595
+E KG+ + GK ++PV +P D YP L + R+ Q+HT T +
Sbjct: 533 RSEAAWSVHKGW-HRDGKLRMVPVAPQPTRATTDAFYPLILNSGRIRDQWHTMTRTGAVP 591
Query: 596 SLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWG 655
L + P V + DA+R + G+L RV + +G +VA+ + + R G + +P HW
Sbjct: 592 RLMQHINEPVVEVAPADAQRYHLLEGELARVRSPKGVMVAKVTIGDGQRPGSLFVPMHWN 651
Query: 656 FNYLTKD-------DAIDEFSKMPELKTAACRIS 682
+ + D S PE K A I+
Sbjct: 652 NQFARQGRVNNLLAAVTDPHSGQPESKQTAVAIA 685
>gb|AAD46689.1|AF040988_4 (AF040988) periplasmic nitrate reductase precursor NapA
[Pseudomonas sp. G-179]
Length = 853
Score = 252 bits (638), Expect = 7e-66
Identities = 212/788 (26%), Positives = 337/788 (41%), Gaps = 117/788 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR- 68
C +C GC + + + + D + N+G C KG + DRL PL R
Sbjct: 69 CRFCGTGCGVMVGVKENHVVATHGDMEAEV-NRGLNCVKGYFLSKIMYGKDRLTTPLLRK 127
Query: 69 ---VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
V +K EG+FE ++WEEA +I+A+K K+ L+ GP AL GS + ++ + Y KL
Sbjct: 128 RNGVFDK-EGEFEPVTWEEAFDIMAEKAKKTLKEKGPTALGMFGSGQWTIFEGYAATKLM 186
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
RA +NN++ R C +S + FG +DD + ++WG N A +P+L
Sbjct: 187 RAGFRSNNLDPNARHCMASAAYGFMRTFGMDEPMGCYDDFEHADAFVLWGSNMAEMHPIL 246
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + ++ + K+ V+ + A I L PGTDLAI + + II+ ++
Sbjct: 247 WTRLADRRLGHEHVKVSVLSTFTHRSMDLADIPLVFKPGTDLAILNYIANHIIQTGRVNQ 306
Query: 245 DFVAERVN----------------------------------NFDALARAVEKYTPEWAE 270
+F+ + +F+A + V +YT E
Sbjct: 307 EFIDKNTKFMQATTDIGYGLRAEHPLEVKATGAAKAAEMTPIDFEAFKKHVSEYTLEKVA 366
Query: 271 KISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG- 328
+++GV + + A L+A + L G NQH G + N+ +TG I + G
Sbjct: 367 ELAGVDKGFLEQLAELYADPKVKVMSLWTMGFNQHVRGVWANQMVYNIHLLTGKISEPGN 426
Query: 329 -VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-NEETAKKFSELWGFE---VPSKPGLHY 383
FS + CG V G +LP + + N E K ELW +P KPG H
Sbjct: 427 SPFSLTGQPSACGTAREV-GTFAHRLPADMTVTNPEHRKHAEELWNIPHGIIPEKPGYHA 485
Query: 384 QAIFDAMLEGKIKGIYIMGQNPARSLANSSK---IEEALKRAFVVVADIFPTETTKYADI 440
+ +GK+ ++ N ++ AN+S I F+VV+D +PT T AD+
Sbjct: 486 VQQDRMLHDGKLNFYWVQVNNNMQAAANNSNEAYIGYRNPDNFIVVSDAYPTVTAMTADL 545
Query: 441 VLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVD 500
+LPAA W EK G RR Q V PGEA+ D +V +K E + +D
Sbjct: 546 ILPAAMWVEKEGAYGNAERRTHVWHQLVNAPGEARSDLWQLVEFSKRFTTDEVWPQDILD 605
Query: 501 -----------DVLREINNV----IPALKGATPERLAK---------------------- 523
DVL + NV + + R AK
Sbjct: 606 QNPEYKGKTLYDVLFQNGNVDKFPVSEISSDYENREAKAFGFYLQKGLFEEYASFGRGHG 665
Query: 524 ----------NLEGCMYPCPDENTETPRLFLKGFP-------------TKSGKAELIPVE 560
+ G +P + N ET + +G+ G+A ++
Sbjct: 666 HDLGPYDLYHQVRGLRWPVVN-NQETKWRYREGYDPYVKEGEGVKFYGQNDGRAVILAAP 724
Query: 561 WKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRS 620
++PP E PD+E+ FWL R++ +H+G+M+ R L K +PG +N DA+RLGI
Sbjct: 725 YEPPAESPDDEFGFWLVTGRVLEHWHSGSMTMRVPELYKAFPGARCFMNGDDARRLGINQ 784
Query: 621 GDLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELKT 676
G V++++RRG +++R ++ R GV+ +PW + K DA D SK + K
Sbjct: 785 GGQVKIQSRRGEIISRVDIRGRNRMPHGVIFVPWFDASQLINKVTLDATDPISKQTDFKK 844
Query: 677 AACRISKV 684
A +I V
Sbjct: 845 CAVKILPV 852
>gb|AAC79443.1| (AF083948) periplasmic nitrate reductase large subunit precursor
[Pseudomonas sp. G-179]
Length = 834
Score = 252 bits (638), Expect = 7e-66
Identities = 212/788 (26%), Positives = 337/788 (41%), Gaps = 117/788 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR- 68
C +C GC + + + + D + N+G C KG + DRL PL R
Sbjct: 50 CRFCGTGCGVMVGVKENHVVATHGDMEAEV-NRGLNCVKGYFLSKIMYGKDRLTTPLLRK 108
Query: 69 ---VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
V +K EG+FE ++WEEA +I+A+K K+ L+ GP AL GS + ++ + Y KL
Sbjct: 109 RNGVFDK-EGEFEPVTWEEAFDIMAEKAKKTLKEKGPTALGMFGSGQWTIFEGYAATKLM 167
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
RA +NN++ R C +S + FG +DD + ++WG N A +P+L
Sbjct: 168 RAGFRSNNLDPNARHCMASAAYGFMRTFGMDEPMGCYDDFEHADAFVLWGSNMAEMHPIL 227
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + ++ + K+ V+ + A I L PGTDLAI + + II+ ++
Sbjct: 228 WTRLADRRLGHEHVKVSVLSTFTHRSMDLADIPLVFKPGTDLAILNYIANHIIQTGRVNQ 287
Query: 245 DFVAERVN----------------------------------NFDALARAVEKYTPEWAE 270
+F+ + +F+A + V +YT E
Sbjct: 288 EFIDKNTKFMQATTDIGYGLRAEHPLEVKATGAAKAAEMTPIDFEAFKKHVSEYTLEKVA 347
Query: 271 KISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG- 328
+++GV + + A L+A + L G NQH G + N+ +TG I + G
Sbjct: 348 ELAGVDKGFLEQLAELYADPKVKVMSLWTMGFNQHVRGVWANQMVYNIHLLTGKISEPGN 407
Query: 329 -VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-NEETAKKFSELWGFE---VPSKPGLHY 383
FS + CG V G +LP + + N E K ELW +P KPG H
Sbjct: 408 SPFSLTGQPSACGTAREV-GTFAHRLPADMTVTNPEHRKHAEELWNIPHGIIPEKPGYHA 466
Query: 384 QAIFDAMLEGKIKGIYIMGQNPARSLANSSK---IEEALKRAFVVVADIFPTETTKYADI 440
+ +GK+ ++ N ++ AN+S I F+VV+D +PT T AD+
Sbjct: 467 VQQDRMLHDGKLNFYWVQVNNNMQAAANNSNEAYIGYRNPDNFIVVSDAYPTVTAMTADL 526
Query: 441 VLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVD 500
+LPAA W EK G RR Q V PGEA+ D +V +K E + +D
Sbjct: 527 ILPAAMWVEKEGAYGNAERRTHVWHQLVNAPGEARSDLWQLVEFSKRFTTDEVWPQDILD 586
Query: 501 -----------DVLREINNV----IPALKGATPERLAK---------------------- 523
DVL + NV + + R AK
Sbjct: 587 QNPEYKGKTLYDVLFQNGNVDKFPVSEISSDYENREAKAFGFYLQKGLFEEYASFGRGHG 646
Query: 524 ----------NLEGCMYPCPDENTETPRLFLKGFP-------------TKSGKAELIPVE 560
+ G +P + N ET + +G+ G+A ++
Sbjct: 647 HDLGPYDLYHQVRGLRWPVVN-NQETKWRYREGYDPYVKEGEGVKFYGQNDGRAVILAAP 705
Query: 561 WKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRS 620
++PP E PD+E+ FWL R++ +H+G+M+ R L K +PG +N DA+RLGI
Sbjct: 706 YEPPAESPDDEFGFWLVTGRVLEHWHSGSMTMRVPELYKAFPGARCFMNGDDARRLGINQ 765
Query: 621 GDLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELKT 676
G V++++RRG +++R ++ R GV+ +PW + K DA D SK + K
Sbjct: 766 GGQVKIQSRRGEIISRVDIRGRNRMPHGVIFVPWFDASQLINKVTLDATDPISKQTDFKK 825
Query: 677 AACRISKV 684
A +I V
Sbjct: 826 CAVKILPV 833
>sp|Q56350|NAPA_PARDT PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|1086107|pir||S50163
nitrate reductase (EC 1.7.99.4) large chain precursor,
periplasmic - Thiosphaera pantotropha
>gi|600093|emb|CAA85346.1| (Z36773) periplasmic nitrate
reductase large subunit [Paracoccus denitrificans]
Length = 831
Score = 243 bits (615), Expect = 4e-63
Identities = 214/787 (27%), Positives = 328/787 (41%), Gaps = 115/787 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + +G D + N+G C KG + DRL +PL R
Sbjct: 48 CRFCGTGCGVMVGVKEGRVVATHGDLLAEV-NRGLNCVKGYFLSKIMYGADRLTQPLLRK 106
Query: 70 GE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
+ +G+F +SWEEA + +A + K +L GP AL GS + ++ + Y KL R
Sbjct: 107 KDGVYAKDGEFTPVSWEEAFDTMAAQAKRVLRDKGPTALGMFGSGQWTIFEGYAATKLMR 166
Query: 127 A-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
A +NN++ R C +S A + FG +DD + ++WG N A +P+L+
Sbjct: 167 AGFRSNNLDPNARHCMASAAYAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILW 226
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ ++ + K+ V+ ++ A I + PGTDLAI + + II+ ++D
Sbjct: 227 TRVADRRLGHPHVKVAVLSTFTHRSSDLADIPIVFKPGTDLAILNYIANHIIQTGRVNRD 286
Query: 246 FV----------------------------------AERVNNFDALARAVEKYTPEWAEK 271
FV A + F+ A V +YT + +
Sbjct: 287 FVDRHTTFVAGATGIGYGLRDDDPREMAARTAEDPAATTPSTFEEFAELVSEYTLDKVSE 346
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
+SGV + + + A L+A + L G NQH G + NL +TG I + G
Sbjct: 347 LSGVEPAFLEQLAELYADPDRKVMSLWTMGFNQHVRGVWANQMVYNLHLLTGKISEPGNS 406
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL-NEETAKKFSELWGFE---VPSKPGLHYQ 384
FS + CG V G +LP + + N E + E+W +P +PGLH
Sbjct: 407 PFSLTGQASACGTARQV-GTFRHRLPSDMTVTNPERRQDAEEIWRIPHGVIPEQPGLHAV 465
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR---AFVVVADIFPTETTKYADIV 441
A A+ +G + +I N ++ N+ R F+VV+D +PT T AD++
Sbjct: 466 AQDRALHDGTLNFYWIQVNNNLQASPNNDGEAWPGYRNPDNFIVVSDAYPTVTALAADLI 525
Query: 442 LPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD----------------WEIIVMLA 485
LPAA W EK G RR Q V+ PGEA+ D W ++ A
Sbjct: 526 LPAAMWVEKEGAYGNAERRTHVWHQLVEAPGEARSDLWQMMEFSTRFTTDEVWPEEILAA 585
Query: 486 KSIGLGE-----YFNYSSVDDV-LREINNVIPALKG------------------------ 515
G+ F SVD L E+N V P +
Sbjct: 586 NPNYRGQSLFDVLFRNGSVDRFDLSELNPVTPTAESNAFGFYVQKGLFEEYAPFGRGHGH 645
Query: 516 -ATPERLAKNLEGCMYPCPDENTET-------------PRLFLKGFPTKSGKAELIPVEW 561
P + G +P D ET P ++ + GKA +I V +
Sbjct: 646 DLAPYDTYHEVRGLRWPVVD-GKETLWRYREGLDPYVEPGAGVQFYGNPDGKARIIAVPY 704
Query: 562 KPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
+PP E PDEEY WL R++ +H+G+M+ R L + +PG +N DA+ +G G
Sbjct: 705 EPPAEPPDEEYNIWLVTGRVLEHWHSGSMTMRVPELYRAFPGARCFMNPEDARDMGFNQG 764
Query: 622 DLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELKTA 677
VR+ +RRG + +R E R GVV +PW + K DA D SK + K
Sbjct: 765 AEVRIVSRRGEIRSRVETRGRNRMPRGVVFVPWFDASQLINKVTLDATDPISKQTDFKKC 824
Query: 678 ACRISKV 684
A +I V
Sbjct: 825 AVKILPV 831
>pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinella succinogenes
>gi|48507|emb|CAA37989.1| (X54057) formate dehydrogenase
[Wolinella succinogenes]
Length = 939
Score = 236 bits (596), Expect = 6e-61
Identities = 168/562 (29%), Positives = 265/562 (46%), Gaps = 48/562 (8%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K + +C +CSVGC + VDG + E + G C KG RL+
Sbjct: 55 KKVKTICTYCSVGCGIIAEVVDGVWVRQEVAQDHPISQGGHCC-KGADMIDKARSETRLR 113
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
P+++VG GK+ + SW+ A++ IAK+ +++ + +GP+++ F+G +CS+E +Y +K
Sbjct: 114 YPIEKVG----GKWRKTSWDSAMDKIAKQLQDLTQKYGPDSVMFIGGSKCSIEQSYYFRK 169
Query: 124 LARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPV 183
A GTNN++ R+C + S G TN D++ SK I I G NPA +PV
Sbjct: 170 FAAFFGTNNLDTIARICHAPTVAGVSNTLGYGGMTNHLADMMHSKAIFIIGGNPAVNHPV 229
Query: 184 LFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
G + GAK+IVVDP + TA A +++ GTD+A M+ I+K L D
Sbjct: 230 --GMVHILRAKEAGAKIIVVDPHFSRTATKADHYVRLRNGTDVAFMYGMIRHIVKNGLED 287
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
K+F+ +R+ ++ + + E+YTPE E+++GVPA + E +FA A+++ G+ Q
Sbjct: 288 KEFIRQRLFGYEEILKECEQYTPEVVEEVTGVPAQQLIEITEIFAKAKPASLIWGMGLTQ 347
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCA-QLPGPVPLNEE 362
H G+ L I GNIGK G + V+ G H + A N A LPG L++
Sbjct: 348 HTTGTSNTRLAPILQMILGNIGKRGGGTNVLRG-HDNVQGATDMGNLADSLPGYYGLDKN 406
Query: 363 TAKKFSELW--------------------GFEVPS-KPGLHYQAIFDAMLEGKIKGIYIM 401
F +W GF V + + G+ + K++ + ++
Sbjct: 407 AWNHFCGIWKVDFEAMQKRFKTPDMMHKKGFSVSTWRYGVTEEENIPHNAGTKLRSLIVV 466
Query: 402 GQNPARSLANSSKIEEALKRAFVVV------ADIFPTETTKYADIVLPAAAWYEKTGTVI 455
G ++A ++AL + +VV D K +LPAA E +G V
Sbjct: 467 GSG-ISTIARVDTTKDALDKMDLVVFFDPYFNDAAALTNRKDNLYILPAATQMETSGRVA 525
Query: 456 TQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYF---------NYSSVDDVLREI 506
NR +KP E +PD EI+ LAK +G E + N+ DD RE+
Sbjct: 526 ATNRSYQWRSMVMKPLFECRPDEEILFDLAKRLGFYEEYTRSLGDGKGNFVWPDDATREV 585
Query: 507 NNVIPAL--KGATPERLAKNLE 526
I + +G TPERL + E
Sbjct: 586 AKAIRTVGFQGRTPERLKAHAE 607
>emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 776
Score = 234 bits (591), Expect = 2e-60
Identities = 230/797 (28%), Positives = 342/797 (42%), Gaps = 141/797 (17%)
Query: 3 EKLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRL 62
+K + C +C+ CRL + G + + + +G++C K Q + +RL
Sbjct: 4 DKTVATACQFCNSNCRLNVDLKAGRVLAVRGEDSDPV-QQGQVCVKAELMPQLVYNTERL 62
Query: 63 KKPLKRV-GEKGE--GKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNY 119
+PL+RV G KG KFE +SWEEA+ IAKKF + ++ +A + R
Sbjct: 63 TRPLRRVSGAKGSPHSKFEAVSWEEALHTIAKKFLALRDAGQAHTIANRTTGRMPRGTGS 122
Query: 120 LLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPF--------DDIVKSKVIL 171
L+ ++ LG+ N G +C + A + FG TN + DD+ ++ L
Sbjct: 123 LVARMFAMLGSPNNTDVGPVCNDAGGNALAMTFGLGNFTNGYGTDGSTGKDDLGSARHYL 182
Query: 172 IWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALA 231
G N A T+PV F Y + +N A L VVDP T T A + P P TDLA+ LA
Sbjct: 183 FLGTNQAETHPVTF-DYLLRGRKENNATLTVVDPRLTPTGAAADRWVAPKPHTDLALLLA 241
Query: 232 MLHVIIKEELYDKDFVAERVNNFDALAR--AVEKYTPEWAEKISGVPASLIHEAAVLFAT 289
MLH I++E+LYDK FV V FD L R A +YTPEWA K++GV A +I + AV +A
Sbjct: 242 MLHHIVQEKLYDKAFVKRWVAGFDELRRHLAKHQYTPEWAAKVTGVKADVITKMAVEYAK 301
Query: 290 GGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAV-PGV 348
A + N GI+ T + L A+TGNIG+ PG C PG
Sbjct: 302 AKPAAIFCNAGISHQLGAFDTYRVATFLAAVTGNIGQ--------PGGGCNFMHNTWPG- 352
Query: 349 NCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARS 408
QLP PL+ + ++ L P P ++I +++ + G NP S
Sbjct: 353 -DLQLP---PLDADLPERREAL-----PVGPDYFAESILTDN-PYRLRAVVTQG-NPLVS 401
Query: 409 LANSSKIEEALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMR-SFQ 466
AN++K+++A ++ F V +F E YADI+LP + E G + ++ R +R Q
Sbjct: 402 SANTTKVKKAFEQLDFYVYTGLFMEEAAYYADIILPVCSGLEMEGVYMRRDDRAIRWQDQ 461
Query: 467 AVKPPGEAKPDWEIIVMLAKSIG---------------LGEYFNYSSVDDVLREINNVIP 511
AV GE++PDWEI V LA ++ + NY + D P
Sbjct: 462 AVDRVGESRPDWEIWVGLAHALAELDSRRPAAEWRAAFPERWMNYRELWDA---FVTHTP 518
Query: 512 ALKGATPERLAKNLEGCMYPCP-DENTETPRLFL------------------KGFPTKSG 552
+ G T R+ + E +PCP +++ L+L K F T SG
Sbjct: 519 GVGGMTRARMRQRTEPLRWPCPTEDHPGVSTLYLDHPSWYQAAESLDPANRGKRFLTPSG 578
Query: 553 KAEL----------------IPVEWKPP---GEVPDEEYP-FWLTN-------------- 578
K E+ +P+ + P G P Y ++TN
Sbjct: 579 KVEISTPDLEKKLAVTGHSALPIFYTHPEVTGRNPTLSYSRKFVTNPINPQAVTHPVRLG 638
Query: 579 ----------FRLVGQ------FHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGD 622
F L+G H +++ T + K+ ++ I+ A+R GI GD
Sbjct: 639 VPGSDAVHHDFPLMGMTGRPSVVHFAEVTHWTPTGKQLNGIRFIQIHPDTARRSGIADGD 698
Query: 623 LVRVETRRGSLVARAEVTENIREGVVAMPWHWG----------------FNYLTKDDAID 666
V VE+ RGS+ A + E IR V +P +G N L D D
Sbjct: 699 EVTVESPRGSVTGTALLWEGIRADTVFVPNTFGPAQKQGDLFDDPRYEAANTLPDDRFYD 758
Query: 667 EFSKMPELKTAACRISK 683
S K ACR+ K
Sbjct: 759 NLSGQQAFKCFACRVVK 775
>gb|AAC23522.1| (AF069545) periplasmic nitrate reductase precursor [Rhodobacter
sphaeroides f. sp. denitrificans]
>gi|3345489|dbj|BAA31961.1| (AB016290) large subunit of
a periplasmic nitrate reductase [Rhodobacter sphaeroides
f. sp. denitrificans]
Length = 831
Score = 230 bits (580), Expect = 4e-59
Identities = 214/787 (27%), Positives = 326/787 (41%), Gaps = 115/787 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + + DG D + N+G C KG + DRL PL R+
Sbjct: 48 CRFCGTGCGVMVGTRDGQVVATHGDTQAEV-NRGLNCVKGYFLSKIMYGEDRLTTPLLRM 106
Query: 70 GE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
+ EG+F +SW+EA +++A + K +L+ GP+A+ GS + ++ + Y KL R
Sbjct: 107 KDGVYHKEGEFAPVSWDEAFDVMAAQAKRVLKDKGPKAMGMFGSGQWTIWEGYAASKLMR 166
Query: 127 A-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
A +NN++ R C +S A + FG +DD + ++WG N A +P+L+
Sbjct: 167 AGFLSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILW 226
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ ++ + ++ V+ + A + PGTDLAI + H II ++D
Sbjct: 227 SRLTDRRLSHEHVRVAVLSTFTHRSMDLADTPIIFRPGTDLAILNYIAHHIISTGRVNRD 286
Query: 246 FVAERVN----------------------------------NFDALARAVEKYTPEWAEK 271
FV N +F+ A V +YT E A +
Sbjct: 287 FVDRHTNFALGATDIGYGLRPEHQLQLIAKGAADAGAMTPTDFETFAALVSEYTLERAAE 346
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
ISGV +L+ E A L+A + L G NQH G + NL +TG I + G
Sbjct: 347 ISGVEPALLEELAELYADPDRKVMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNS 406
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGP-VPLNEETAKKFSELWGFE---VPSKPGLHYQ 384
FS + CG V G +LP V N E E+W +P G H
Sbjct: 407 PFSLTGQPSACGTAREV-GTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAV 465
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR---AFVVVADIFPTETTKYADIV 441
+ +G+I ++ N ++ N + R F+VV+D +PT T + AD+V
Sbjct: 466 EQDRKLHDGEINFYWVQVNNNMQAAPNIDQETYPGYRNPENFIVVSDAYPTVTGRCADLV 525
Query: 442 LPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII---------------VMLA 485
LPAA W EK G RR Q V+ PGEA+ D W+++ ++ A
Sbjct: 526 LPAAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKRFTTDEVWPEEILAA 585
Query: 486 KSIGLGE-----YFNYSSVD-----DVLREINNVIPALKGATPER--------------- 520
G+ F SVD DV + N AL G P++
Sbjct: 586 APAYRGKTLFEVLFANGSVDRFPVSDVDPDHANHEAALFGFYPQKGLFEEYAAFGRGHGH 645
Query: 521 ------LAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPG--------- 565
+ G +P E ET + +G+ E + KP G
Sbjct: 646 DLAPFDTYHEVRGLRWPVV-EGEETRWRYREGYDPYVKPGEGLRFYGKPDGRAVILGVPY 704
Query: 566 ----EVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
E PDEE+ FWL R++ +H+G+M+ R L K +PG ++ DA+ G+ G
Sbjct: 705 EPPAESPDEEFGFWLVTGRVLEHWHSGSMTLRVPELYKAFPGAVCFMHPEDARSRGLNRG 764
Query: 622 DLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELKTA 677
VRV +RRG + R E R GVV +PW + K DA D S+ + K
Sbjct: 765 SEVRVISRRGEIRTRLETRGRNRMPRGVVFVPWFDASQLINKVTLDANDPISRQTDFKKC 824
Query: 678 ACRISKV 684
A +I V
Sbjct: 825 AVKIEAV 831
>pir||F83499 periplasmic nitrate reductase protein NapA PA1174 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947098|gb|AAG04563.1|AE004547_9 (AE004547)
periplasmic nitrate reductase protein NapA [Pseudomonas
aeruginosa]
Length = 829
Score = 227 bits (572), Expect = 4e-58
Identities = 212/786 (26%), Positives = 335/786 (41%), Gaps = 119/786 (15%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + + DG D + N+G C KG + DRL +PL R+
Sbjct: 43 CRFCGTGCSVMVATRDGQVVATHGDIKAEV-NRGINCVKGYFLSKIMYGSDRLTRPLLRM 101
Query: 70 GE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
+ +G+F+ ISWE+A +I+A+KFK L++ GPE++ GS + ++ + Y KL +
Sbjct: 102 KDGKFDKQGEFQPISWEQAFDIMAEKFKAALKAKGPESVGMFGSGQWTVWEGYAANKLFK 161
Query: 127 A-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
A L +NN++ R C +S + + FG +DDI + ++WG N A +PVL+
Sbjct: 162 AGLRSNNIDPNARHCMASAVMGFMRSFGMDEPMGCYDDIEATDSFVLWGSNMAEMHPVLW 221
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ ++ + K+ V+ + + + A + + P TDL I + + II+ ++D
Sbjct: 222 SRVTDRRLSAPQVKVAVLSTFEHRSFELADLPMVFKPQTDLIILNYIANHIIESGAVNRD 281
Query: 246 FVAERVN----------------------------------NFDALARAVEKYTPEWAEK 271
FV V +F A A V+ YT E +
Sbjct: 282 FVERHVRFAHGAEDIGYGLRPDDPLEKKAKNADKANTWSDIDFKAFAEFVKPYTLERTAR 341
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
SGVPA + A L+A V G NQH G I N+ +TG I + G
Sbjct: 342 ESGVPAERLKALAELYADPKRKVVSFWTMGFNQHTRGVWANNLIYNIHLLTGKISEPGNS 401
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGPV----PLNEETAKKFSELWGFEVPSKPGLHYQ 384
FS + CG V G +LP + P + ETA+K ++ + K G H
Sbjct: 402 PFSLTGQPSACGTAREV-GTFSHRLPADLVVTNPKHRETAEKIWKVPAGTIQEKVGFHAV 460
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-----KRAFVVVADIFPTETTKYAD 439
+ +G + + N + A + ++E L FV+V+D++PT + + AD
Sbjct: 461 QQSRMLKDGVLNVYWTQVSNNMQ--AGPNVMQEVLPGWRNPDNFVIVSDVYPTVSAQAAD 518
Query: 440 IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII--------------VML 484
++LP+A W EK G RR Q VK PGEAK D W+++ +L
Sbjct: 519 LILPSAMWVEKEGAFGNAERRTQFWHQLVKAPGEAKSDLWQLVEFSKRFTTDEVWPAELL 578
Query: 485 AKSIGL------------GEYFNYSSVDDVLREINNVIPAL-----KGATPERLA----- 522
AK+ L G+ + + D N+ + A KG E A
Sbjct: 579 AKAPELKGKTLYDVLFRNGQVDRFPASDLAKGYANDEVDAFGFYIQKGLFEEYAAFGRGH 638
Query: 523 ----------KNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKP--------- 563
G +P D ET + +G+ K + P
Sbjct: 639 GHDLAPFDAYHEARGLRWPVVD-GKETRWRYREGYDPYVSKGSGVQFYGYPDKKAIVFAL 697
Query: 564 PGEVPDE----EYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIR 619
P E P E +YPFWL R++ +HTG+M+ R L K P V ++ DA++L +R
Sbjct: 698 PYEPPAEAPDQDYPFWLATGRVLEHWHTGSMTARVPELYKAVPDALVYMHPEDARQLKLR 757
Query: 620 SGDLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELK 675
G V+V +RRG + AR E + +G+V +P+ + K DA D SK + K
Sbjct: 758 RGSEVKVVSRRGEIRARVETRGRNKPPQGLVFVPFFDANKLINKVTLDATDPISKQTDYK 817
Query: 676 TAACRI 681
A RI
Sbjct: 818 KCAVRI 823
>pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large chain Cj1511c
[similarity] - Campylobacter jejuni (strain NCTC 11168)
Length = 934
Score = 227 bits (572), Expect = 4e-58
Identities = 179/562 (31%), Positives = 265/562 (46%), Gaps = 50/562 (8%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K + VC CSVGC + +G + E + + G C KG RLK
Sbjct: 51 KKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCC-KGSDMIDMVRSHVRLK 109
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
P+K K G+++ IS+E+A+ I +K + + PE++ FLGS + + E Y ++K
Sbjct: 110 YPMK----KENGEWKRISYEQALSEIGEKLAAYRKEN-PESVMFLGSAKLNNEQAYYIRK 164
Query: 124 LARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPV 183
A GTNNV+ R+C S+ + FG A TN DI +SK I+I G NPA +PV
Sbjct: 165 FAAFFGTNNVDHQARICHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPV 224
Query: 184 LFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
F ++F KA + GAKLIVVDP T++A A I+ + PGTD+A ML +I E L D
Sbjct: 225 GF-RHFLKA-KEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLED 282
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
++ ERV D + K+T E E ++G+ L+ + A T++ G+ Q
Sbjct: 283 TKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQ 342
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEET 363
H G+ + + GNIGK G ++ G A+ LPG PLNE T
Sbjct: 343 HTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEAT 402
Query: 364 AKKFSELWGFEVP------------SKPGLHYQAIFDAMLEGK------------IKGIY 399
+ ++++WG + K GL + A L GK +K +
Sbjct: 403 WRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALV 462
Query: 400 IMGQNPARSLANSSKIEEALKR-AFVVVADIFPTETTKYAD-----IVLPAAAWYEKTGT 453
+MG N S A K++E L+ +V+AD F E A+ +LPAA +E +G+
Sbjct: 463 VMG-NGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGS 521
Query: 454 VITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDD---------VLR 504
V NR F+ V P E+ D EI+ LAK +G E F + D+ R
Sbjct: 522 VTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATR 581
Query: 505 EINNVIPA--LKGATPERLAKN 524
EI + + L G +PERL K+
Sbjct: 582 EIAKAVRSIGLNGWSPERLKKH 603
>pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658095|gb|AAF96578.1|
(AE004397) periplasmic nitrate reductase [Vibrio
cholerae]
Length = 829
Score = 220 bits (556), Expect = 3e-56
Identities = 207/787 (26%), Positives = 334/787 (42%), Gaps = 118/787 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
C +C GC + + + DG R + +P+ P NKG C KG + DRLK PL R
Sbjct: 48 CRFCGTGCSVLVGTQDG--RVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLR 105
Query: 69 VGE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
+ + +G+F +SW+ A +++A+K+K L++ GP ++ GS + ++ + Y KL
Sbjct: 106 MKDGQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFGSGQWTVMEGYAAVKLM 165
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
+A +NN++ R C +S V + FG +DD + ++WG N A +PVL
Sbjct: 166 KAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPVL 225
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + ++ + K+ V+ + + A +P +DLAIA + + II+ + +
Sbjct: 226 WTRITDRRLSHPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAVNW 285
Query: 245 DFVAERVN---------------------------------NFDALARAVEKYTPEWAEK 271
DFV + + +F+ ++V YT E A +
Sbjct: 286 DFVNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKASE 345
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
ISGV + A +A + L G+NQH G + NL +TG I G
Sbjct: 346 ISGVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPGNS 405
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGPV----PLNEETAKKFSELWGFEVPSKPGLHYQ 384
FS + CG V G +LP + P + A+K +L +P KPG H
Sbjct: 406 PFSLTGQPSACGTAREV-GTFAHRLPADMVVANPKHRAIAEKVWKLPEGTIPEKPGFHAV 464
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-----KRAFVVVADIFPTETTKYAD 439
+ +G + ++ N ++ N + EE L F+VV+D +PT T + AD
Sbjct: 465 QQDRMLKDGVLNCYWVQCNNNMQAGPNIN--EERLPGYRNPENFIVVSDAYPTVTAQAAD 522
Query: 440 IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII----------VMLAKSI 488
+VLP A W EK G RR +Q VK GE+ D W++I V + +
Sbjct: 523 LVLPTAMWVEKEGAYGNAERRTQVWYQQVKTVGESHSDSWQVIEFSKRFKVEDVWPEELL 582
Query: 489 GLGEYFNYSSVDDVL--------------REINNVIPAL-----KG-------------- 515
+ ++ DVL RE+N+ KG
Sbjct: 583 AKAPQYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGLFEEYAEFGRGHGH 642
Query: 516 -ATPERLAKNLEGCMYPCPDENTETPRLFLKG-------------FPTKSGKAELIPVEW 561
P + + G +P D ET F +G + GKA +I +
Sbjct: 643 DLAPYDVYHQVRGLRWPVVD-GKETKWRFKEGSDPYAKAGSGWDFYGKPDGKAWIISSPY 701
Query: 562 KPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
+ P E+P+EEY WL R++ +HTGTM+ R L K P ++ DA+ G+R G
Sbjct: 702 EAPPEMPNEEYDLWLCTGRVLEHWHTGTMTRRVPELYKAVPDALCFMHHEDAQARGLRRG 761
Query: 622 DLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTK--DDAIDEFSKMPELKTA 677
D V + RG + R E + +G+V +P+ + K DA D SK + K
Sbjct: 762 DEVLISNSRGEVRVRVETRGRNKPPKGLVFVPFFDARILVNKLILDATDPLSKQTDFKKC 821
Query: 678 ACRISKV 684
+I+KV
Sbjct: 822 PVKITKV 828
>sp|Q53176|NAPA_RHOSH PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|1150570|emb|CAA86827.1|
(Z46806) NapB [Rhodobacter sphaeroides]
Length = 831
Score = 216 bits (545), Expect = 6e-55
Identities = 212/787 (26%), Positives = 323/787 (40%), Gaps = 115/787 (14%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + + DG D + N+G C KG + DRL PL R+
Sbjct: 48 CRFCGTGCGVMVGTRDGQVVATHGDTQAEV-NRGLNCVKGYFLSKIMYGEDRLTTPLLRM 106
Query: 70 GE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
+ EG+F +SW+EA +++A + K +L+ PEA+ GS + ++ + Y KL R
Sbjct: 107 KDGVYHKEGEFAPVSWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWTIWEGYAASKLMR 166
Query: 127 A-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
A +NN++ R C +S A + FG +DD + ++WG N A +P+L+
Sbjct: 167 AGFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILW 226
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ ++ + ++ V+ ++ + + PGTD AI + H II ++D
Sbjct: 227 SRLTDRRLSHEHVRVAVLSTFTHRSSDLSDTPIIFRPGTDRAILNYIAHHIISTGRVNRD 286
Query: 246 FVAERVN----------------------------------NFDALARAVEKYTPEWAEK 271
FV N +F+ A V +YT E A +
Sbjct: 287 FVDRHTNFALGATDIGYGLRPEHQLQLAAKGAADAGAMTPTDFETFAALVSEYTLEKAAE 346
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
ISGV +L+ E A L+A + L G NQH G + NL +TG I + G
Sbjct: 347 ISGVEPALLEELAELYADPDRKWMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNS 406
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGP-VPLNEETAKKFSELWGFE---VPSKPGLHYQ 384
FS CG V G +LP V N E E+W +P G H
Sbjct: 407 PFSLTGQPFACGTAREV-GTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAV 465
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR---AFVVVADIFPTETTKYADIV 441
+ +G+I ++ N ++ N + R F+VV+D +PT T + AD+V
Sbjct: 466 EQDRKLHDGEINFYWVQVNNNMQAAPNIDQETYPGYRNPENFIVVSDAYPTVTGRAADLV 525
Query: 442 LPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII---------------VMLA 485
LPAA W EK G RR Q V+ PGEA+ D W+++ ++ A
Sbjct: 526 LPAAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKRFTTDEVWPEEILSA 585
Query: 486 KSIGLGE-----YFNYSSVD-----DVLREINNVIPALKGATPER--------------- 520
G+ F SVD DV + N AL G P++
Sbjct: 586 APAYRGKTLFEVLFANGSVDRFPASDVNPDHANHEAALFGFYPQKGLFEEYAAFGRGHGH 645
Query: 521 ------LAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGE-----VPD 569
+ G +P E ET + +GF E + KP G VP
Sbjct: 646 DLAPFDTYHEVRGLHWPVV-EGEETRWRYREGFDPYVKPGEGLRFYGKPDGRAVILGVPY 704
Query: 570 E--------EYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
E E+ FWL R++ +H+G+M+ R L K +PG ++ DA+ G+ G
Sbjct: 705 EPPAESPDEEFGFWLVTGRVLEHWHSGSMTLRWPELYKAFPGAVCFMHPEDARSRGLNRG 764
Query: 622 DLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTKD--DAIDEFSKMPELKTA 677
VRV +RRG + R E R GVV +PW + K DA D S+ + K
Sbjct: 765 SEVRVISRRGEIRTRLETRGRNRMPRGVVFVPWFDASQLINKVTLDANDPISRQTDFKKC 824
Query: 678 ACRISKV 684
A +I V
Sbjct: 825 AVKIEAV 831
>emb|CAB73932.1| (AL139078) putative formate dehydrogenase large subunit
(Selenocysteine containing) [Campylobacter jejuni]
Length = 934
Score = 214 bits (539), Expect = 3e-54
Identities = 178/563 (31%), Positives = 264/563 (46%), Gaps = 52/563 (9%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K + VC CSVGC + +G + E + + G C KG RLK
Sbjct: 51 KKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCC-KGSDMIDMVRSHVRLK 109
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
P+K K G+++ IS+E+A+ I +K + + PE++ FLGS + + E Y ++K
Sbjct: 110 YPMK----KENGEWKRISYEQALSEIGEKLAAYRKEN-PESVMFLGSAKLNNEQAYYIRK 164
Query: 124 LARALGTNNVEFAGRLC-QSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
A GTNNV+ R+ S+ + FG A TN DI +SK I+I G NPA +P
Sbjct: 165 FAAFFGTNNVDHQARI-UHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHP 223
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
V F ++F KA + GAKLIVVDP T++A A I+ + PGTD+A ML +I E L
Sbjct: 224 VGF-RHFLKA-KEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLE 281
Query: 243 DKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGIN 302
D ++ ERV D + K+T E E ++G+ L+ + A T++ G+
Sbjct: 282 DTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLT 341
Query: 303 QHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEE 362
QH G+ + + GNIGK G ++ G A+ LPG PLNE
Sbjct: 342 QHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEA 401
Query: 363 TAKKFSELWGFEVP------------SKPGLHYQAIFDAMLEGK------------IKGI 398
T + ++++WG + K GL + A L GK +K +
Sbjct: 402 TWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKAL 461
Query: 399 YIMGQNPARSLANSSKIEEALKR-AFVVVADIFPTETTKYAD-----IVLPAAAWYEKTG 452
+MG N S A K++E L+ +V+AD F E A+ +LPAA +E +G
Sbjct: 462 VVMG-NGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSG 520
Query: 453 TVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDD---------VL 503
+V NR F+ V P E+ D EI+ LAK +G E F + D+
Sbjct: 521 SVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENAT 580
Query: 504 REINNVIPA--LKGATPERLAKN 524
REI + + L G +PERL K+
Sbjct: 581 REIAKAVRSIGLNGWSPERLKKH 603
>pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtilis
>gi|2618996|gb|AAB84420.1| (AF027868) putative formate
dehydrogenase [Bacillus subtilis]
>gi|2634251|emb|CAB13750.1| (Z99114) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 677
Score = 208 bits (525), Expect = 1e-52
Identities = 189/667 (28%), Positives = 299/667 (44%), Gaps = 68/667 (10%)
Query: 13 CSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGE 71
C C L I DG K++ D P P G +C K + + RL PLKR G
Sbjct: 20 CPDQCGLLIHKKDGKIVKVQGD--PDHPVTAGNICNKVRNMTERIYDEKRLTTPLKRTGA 77
Query: 72 KGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL---AFLGSERCSLEDNYLLQKLARAL 128
KG+ FE ISW+EAI+ I ++K++++ G E++ +F G+ L + ++ +
Sbjct: 78 KGQAIFEPISWKEAIDTITSRWKQLIDEEGAESILPYSFYGNMG-KLTAEGMDRRFFYRM 136
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN--PVLFG 186
G++ +E +C + G A +P ++ V +K+ + WG N +TN +
Sbjct: 137 GSSQLERT--ICSKAGSEGYKYTMGISAGIDP-EETVHTKLFIFWGINAVSTNMHQITIA 193
Query: 187 QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDF 246
Q K GAK++V+D K +T + A + PGTD A+AL ++H++ KE L+D+ F
Sbjct: 194 QKARK----KGAKIVVIDVHKNQTGRLADWFIPIKPGTDSALALGIMHILFKENLHDEAF 249
Query: 247 VAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHAN 306
++E ++ L V++Y PE I+GV I+ A ++ + + + G H N
Sbjct: 250 LSEYTVGYEELREHVKQYDPEKVSTITGVSTEDIYRLAKMYGETSPSFIRIGNGPQHHDN 309
Query: 307 GSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKK 366
G + I+ L AITG G G + + N L P L T +
Sbjct: 310 GGMIVRTIACLPAITGQWLHTG-------GGAIKHNSGILEYNTNALQRPDLLKGRTPRS 362
Query: 367 F--SELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR--A 422
F ++L + + P I+ ++I G NPA ++K+ + L R
Sbjct: 363 FNMNQLGRVLLETDP--------------PIRSLFIYGTNPAVVAPEANKVRQGLLREDL 408
Query: 423 FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQ-AVKPPGEAKPDWEII 481
F VV D+F TET YADIVLPA + +E T + ++ Q ++ GE+K + E+
Sbjct: 409 FTVVHDLFLTETAAYADIVLPATSAFENTDFYTSYWHHYIQLQQPVIERYGESKSNTEVF 468
Query: 482 VMLAKSIGLGEYFNYSSVDDVLREI--NNVIPALKGATPERLAKNLEGCMYPCPDENTET 539
+LA+++G + S + ++R+ + P L + L K + E
Sbjct: 469 RLLAEAMGFTDQELKDSDEVLIRQALDHPDNPHLAEIDYDSLTK------HSFMKAKREK 522
Query: 540 PRLFLKGFPTKSGKAELIPVEWKPPG---------EVPDEEYPFWLTNFRLVGQFH---T 587
P LF PT SGK EL + K G V D E+PF + G H
Sbjct: 523 P-LFPGELPTPSGKIELYSEKMKQDGFPALPTYTPLVTDNEHPF----MYVPGPNHNFLN 577
Query: 588 GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGV 647
T SN K +K P + IN +DA++ GI G VR+ RG A V E + GV
Sbjct: 578 STFSNNEKHIKLE-KTPKLFINTKDAEKHGIVDGAPVRIWNSRGECELTAAVGEQVLPGV 636
Query: 648 VAMPWHW 654
V W
Sbjct: 637 VVSQGLW 643
>sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SULFUR REDUCTASE CHAIN A)
>gi|79393|pir||S23457 polysulfide reductase (EC 1.-.-.-)
chain psrA precursor - Wolinella succinogenes
>gi|48526|emb|CAA46176.1| (X65042) gtg start codon
[Wolinella succinogenes]
Length = 763
Score = 202 bits (508), Expect = 1e-50
Identities = 191/707 (27%), Positives = 313/707 (44%), Gaps = 73/707 (10%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG-KLCPKGVSSYQHYVHPDRL 62
K +P +C C+ C + V+G + + NPK ++G K+C +G S + P RL
Sbjct: 45 KFVPSICEMCTSSCTIE-ARVEG-DKGVFIRGNPKDKSRGGKVCARGGSGFNQLYDPQRL 102
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
KP+ RVGE+GEGK++E+SW+EA IAKK EI + HG +AF S +
Sbjct: 103 VKPIMRVGERGEGKWKEVSWDEAYTFIAKKLDEIKQKHGAHTVAFTAR---SGWNKTWFH 159
Query: 123 KLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
LA+A G+ N+ C + +A +FGG D K+K I+ G+N
Sbjct: 160 HLAQAYGSPNIFGHESTCPLAYNMAGRDVFGGSMNR----DFAKAKYIINMGHNVFEGIV 215
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
+ + + + +AI +NGAK++ ++P + A+ A PG DL L +H +I E LY
Sbjct: 216 ISYVRQYMEAI-ENGAKVVTLEPRLSVMAQKASEWHAIKPGHDLPFVLGFMHTLIFENLY 274
Query: 243 DKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGG-NATVVLNEGI 301
DK FV + F+ L ++E TPE +PA I A FA A +
Sbjct: 275 DKKFVQKYCTGFEELKASIEPCTPEKMALECDIPADTIKRLAREFAKAAPKAIFDFGHRV 334
Query: 302 NQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPG------ 355
A+ + A+ GNI ++G G+ G + G + G
Sbjct: 335 TFTPQELELRRAMMMVNALVGNIERDG---GMYFGKNASFYNQFLGEEDPKAKGLKKPKT 391
Query: 356 ------PVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG------KIKGIYIMGQ 403
VP + +K E F + +K + A L KI G +I+
Sbjct: 392 PAYPKVEVPRIDRIGEKDGE---FFLANKGEGIVSLVPKATLNELPGVPCKIHGWFIVRN 448
Query: 404 NPARSLANSSKIEEALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVM 462
NP + N+ + +ALK VV DI ++T +AD+VLP + E+ T
Sbjct: 449 NPVMTQTNADTVIKALKSMDLVVCVDIQVSDTAWFADVVLPDTTYLER-DEEFTAGGGKN 507
Query: 463 RSF-----QAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDV-LREINNVIPALKGA 516
SF + V+P G+AKP W+I L++ +GLGEYF + ++D L++++ + L
Sbjct: 508 PSFGIGRQKVVEPLGDAKPGWKIAKELSEKMGLGEYFPWKDIEDYRLQQVDGDLDLLAKL 567
Query: 517 TPERLA-----------KNLEGCMYPCPDENTETPRLFLKGFPTK----SGKAELIP--- 558
+ A K++ + P ++ L FP K S K E +
Sbjct: 568 KKDGSASFGVPLMLQEKKSVAEFVKKFPGAASKVNEEGLIDFPKKIQLFSPKLEEVSGKG 627
Query: 559 -VEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMS--NRTKSLKKRWPGPYVMINERDAKR 615
+ ++P ++E F + HTG + N W I+ + A +
Sbjct: 628 GLGYEPFKYKEEDELYFVQGKTPVRSNSHTGNVPWLNNLMEYDAIW------IHPKTASK 681
Query: 616 LGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTKD 662
LGI++GD + + + S ++A +TE +RE + ++GF +++KD
Sbjct: 682 LGIKNGDAIELYNKFSSQKSKALITEGVREDTLF--GYFGFGHVSKD 726
>pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii
>gi|3257782|dbj|BAA30465.1| (AP000006) 639aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 639
Score = 199 bits (502), Expect = 6e-50
Identities = 177/649 (27%), Positives = 297/649 (45%), Gaps = 70/649 (10%)
Query: 36 NPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFK 94
NP P +G LCPKG + + +RLK PL R G++G+ F+E+SW EA+ +I +K +
Sbjct: 32 NPDHPITQGFLCPKGALLPRWFHSNERLKSPLVREGKRGDEDFKEVSWGEALTLIKEKLQ 91
Query: 95 EILESHGPEA-LAFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFG 153
E ++ +G E+ L + + + + Y +L L + ++ +C + A I+G
Sbjct: 92 ETIKEYGSESILVYKYAGDRGIVNYYFPMRLFHYLNASTIDSG--ICDRAGQEALKDIYG 149
Query: 154 GPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKY 213
+P + I + K+++ WG N TN L G K ++ VD V+TETAK
Sbjct: 150 TAVGMDP-EKIKEHKLLVYWGINAFWTN--LHGFMLAKK---GNVEIWTVDVVRTETAKR 203
Query: 214 AHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKIS 273
+ Q P TD+ AL + VII+EELYDKDFV + V F+ V + + + + +
Sbjct: 204 SDKFFQIRPDTDVLFALGVAKVIIEEELYDKDFVTKNVYGFEEFKNYVTRLSLNYVSQET 263
Query: 274 GVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGV 333
G+ I E A F T + + G + G A++ L + G+ K G +
Sbjct: 264 GIKPERIKEFAREF-TEKRGIIHIGYGFQRSLAGGEAVRAVAILPVLVGH--KFGFIYDM 320
Query: 334 IPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG 393
+ K ++E + + + +
Sbjct: 321 ---------------------------KTIDKSYAEGKFLRTKPENKIPQMELTKVIESD 353
Query: 394 KIKGIYIMGQNPARSLANSSKIEEALKRA--FVVVADIFPTETTKYADIVLPAAAWYEKT 451
IK +YI NP S N +++ ALK++ FVV DIF T+T ++D+VLPA ++E+
Sbjct: 354 DIKFLYIYNSNPLASYPNQNRLRRALKKSDVFVVTHDIFLTDTALFSDVVLPANTFFERL 413
Query: 452 GTVIT-QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVI 510
V + +R V+ + K PG K + E+ ++AKS+G+ + Y S +DV+R++
Sbjct: 414 DIVDSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKSLGIRVPYLYESDEDVIRKVLEA- 470
Query: 511 PALKGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDE 570
G + E L K P N +TP SGK E G P
Sbjct: 471 ---NGISFEEL-KRRGFIKVPEGPRNWKTP----------SGKIEFYSQRAVSRGLGPFP 516
Query: 571 EYPFWLTNF--RLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVET 628
EY + + RL+ H T++++ + P + +N DAK GI+ GD V V
Sbjct: 517 EYKKFKGKYPLRLLTPTHRMTITSQYHT-THGIIDPNLYMNPEDAKVRGIKDGDKVGVFN 575
Query: 629 RRGSLVARAEVTENIREGVVAMP---W----HWGFNYLTKDDAIDEFSK 670
G ++ + ++TE++ +GVV + W W N+LT D+ ++++ K
Sbjct: 576 ENGRVITKVKITEDVPKGVVILYKAFWPKLLGWNANFLTTDEKVEKYGK 624
>pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus abyssi (strain
Orsay) >gi|5458212|emb|CAB49701.1| (AJ248285) PUTATIVE
FORMATE DEHYDROGENASE [Pyrococcus abyssi]
Length = 637
Score = 196 bits (492), Expect = 9e-49
Identities = 176/649 (27%), Positives = 300/649 (46%), Gaps = 74/649 (11%)
Query: 36 NPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFK 94
NP+ P +G LCPKG + + DRLK PL + G++ F E SW++AI ++A+K K
Sbjct: 29 NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE----FNETSWDKAISLVAEKLK 84
Query: 95 EILESHGPEA-LAFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFG 153
E+++ +G E+ L + + + + Y +L L + ++ G +C + A I+G
Sbjct: 85 EMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYG 142
Query: 154 GPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKY 213
+P + + + K+I+ WG N TN L G F K N ++ VD V+TETAK
Sbjct: 143 TAVGVDP-EKLKEHKLIVYWGINAFWTN--LHGFMFAKR---NNLEIWTVDVVRTETAKR 196
Query: 214 AHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKIS 273
+ Q P TD+ AL + V+I+E LYD+DFV E V F+ V K + + + +
Sbjct: 197 SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQET 256
Query: 274 GVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGV 333
GV I E A FA + + G + G AI+ L A+ G+
Sbjct: 257 GVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH---------- 305
Query: 334 IPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG 393
G + ++ K ++E + + + +A+ +G
Sbjct: 306 ----RFGFIYDMKTID---------------KSYAEAKFLRTKPELRIPQMELTEAIEDG 346
Query: 394 KIKGIYIMGQNPARSLANSSKIEEALKR--AFVVVADIFPTETTKYADIVLPAAAWYEKT 451
++K +YI NP S N +++ +AL++ FVV DIF T+T ++D+VLPA ++E+
Sbjct: 347 RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERL 406
Query: 452 GTVIT-QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVI 510
V + +R V+ + K PG K + E+ ++AK++G+ + Y S ++V+R+ V+
Sbjct: 407 DIVDSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKNPYLYESDEEVIRK---VL 461
Query: 511 PALKGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDE 570
A + + E K P + TP SGK E G P
Sbjct: 462 EANRISFEELKKKGF--VKIPEGERKWNTP----------SGKIEFYSQRAVKRGLSPFP 509
Query: 571 EYPFWLTNF--RLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVET 628
EY + + RL+ + T++++ + M N +DA GI+ GD V V
Sbjct: 510 EYKKFKGKYPLRLLSPTYRMTVTSQYHNTHGIIDSNLYM-NPKDAAERGIKDGDEVIVFN 568
Query: 629 RRGSLVARAEVTENIREGVVAMP---W----HWGFNYLTKDDAIDEFSK 670
G + + ++TE++ GVV + W W N+LT D ++++ K
Sbjct: 569 ENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTDKKVEKYGK 617
>pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodurans (strain R1)
>gi|6458074|gb|AAF09974.1|AE001899_4 (AE001899)
molybdopterin oxidoreductase [Deinococcus radiodurans]
Length = 697
Score = 193 bits (486), Expect = 5e-48
Identities = 176/672 (26%), Positives = 302/672 (44%), Gaps = 57/672 (8%)
Query: 2 AEKLIPVVCPW-CSVGCRLYIV---SVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHY 56
A + + + CP C CRL I DG + ++ +P P +G C K V
Sbjct: 26 ATRDVLLTCPLDCPDACRLKITIERQPDGSEKAVKLTGDPAHPYTRGFACAKTVHYPARQ 85
Query: 57 VHPDRLKKPLKRVGEKG--EGKFEEISWEEAIEIIAKKFKEILESHGPEA-LAFLGSERC 113
HP+R PL+RV K E ++E ++W+EA++ IA + ++++ GP++ L + +
Sbjct: 86 NHPERPLYPLRRVNPKTDPEPQWERVTWDEALDDIAGRLRQLIAERGPQSILPYHYAGNM 145
Query: 114 SLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIW 173
L + + L RALG +E +C S+ A +G +P D + +++I++W
Sbjct: 146 GLLEGSHVHALWRALGAAELEET--ICASAGTAAWEVGYGTRLAVDPLD-VPHARLIVLW 202
Query: 174 GYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAML 233
G N +T+ L Q A NGA+++ VDP + TA +A HL+ PGTD A+AL ++
Sbjct: 203 GINSLSTHSHLTPQI--TAARKNGARVVCVDPYRNRTAAFADEHLKIRPGTDAALALGVM 260
Query: 234 HVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNA 293
+ D +++A+ D L A E+++P+ +++G+ A + + A L T
Sbjct: 261 RELFVNGWTDAEYLAQATEGVDDLRAAAEEWSPQRTAEVTGLTADEVRDFARLIGTTRPT 320
Query: 294 TVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQL 353
+ + G+ ++ NG+ A++ L A+TG+ G G C
Sbjct: 321 YIRVGYGMTRYENGATALRAVTLLPALTGDWRYRG-----------GGCV-------MST 362
Query: 354 PGPVPLNEETAKKFSELWGFEV--PSKPGLHYQAIFDAMLEGKIKG-IYIMGQNPARSLA 410
G LN L V P P ++ + +A+ G +++ NPA
Sbjct: 363 SGTFKLNRR------RLGAAHVTRPEAPRVNMNELANALDPAVGFGALFVYNCNPAVVSP 416
Query: 411 NSSKIEEALKR--AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQA- 467
+S ++ ++R VVV + TE+ + AD VLPA + E + + A
Sbjct: 417 DSGRVRAGMRRDDLLVVVLEQAMTESARLADYVLPATTFMESPDLYTSYGHFWLGYNPAE 476
Query: 468 VKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLRE-INNVIPALKGATPERLAKNLE 526
+ PPGE +P+ + LA+ +G+ E Y + DD++ E ++ P L G TPERL E
Sbjct: 477 LTPPGECRPNSWVFAELARRLGVEEPSVYWTADDLMAELLDTDHPFLDGLTPERL--KAE 534
Query: 527 GCMYPCPDENTETPRLFLK---GFPTKSGKAELIPV-EWKPPGEVPDEEYPFWLTNFRLV 582
G + P FL G T SGK +L P + P + ++P L
Sbjct: 535 GTV------RLNVPDGFLPYAYGAETPSGKVQLAPAPRFVPVQAELNADFPLRLLT-PPA 587
Query: 583 GQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTEN 642
F T N + P V++ DA G++ G+ R+ + +G + R +VT+
Sbjct: 588 HHFLNSTYGNLGNLNRAEGGEPQVLLCPADAAASGVQDGEYARLTSEQGEVRRRVKVTDA 647
Query: 643 IREGVVAMPWHW 654
+ GV + W
Sbjct: 648 AQPGVAVVEGTW 659
>pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A precursor,
anaerobic - Escherichia coli >gi|145755|gb|AAA83843.1|
(J03412) anaerobic dimethyl sulfoxide reductase
[Escherichia coli] >gi|1651421|dbj|BAA35626.1| (D90727)
Dimethylsulfoxide reductase chain a [Escherichia coli]
>gi|1787121|gb|AAC73980.1| (AE000191) anaerobic dimethyl
sulfoxide reductase subunit A [Escherichia coli K12]
Length = 785
Score = 193 bits (485), Expect = 6e-48
Identities = 206/738 (27%), Positives = 317/738 (42%), Gaps = 115/738 (15%)
Query: 3 EKLIPVVCPW-CSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG----KLCPKGVSSYQHYV 57
EK+I C C C L + VDG + +E D G + C +G S +
Sbjct: 27 EKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVY 86
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL------AFLGS- 110
+PDRLK P+KRVG +GEGKFE ISWEEA +IIA + +++ +G E++ LG
Sbjct: 87 NPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGT 146
Query: 111 -ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKV 169
R N L+ +L G + G + + +GG A N DI SK+
Sbjct: 147 MTRSWPPGNTLVARLMNCCG-GYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKL 205
Query: 170 ILIWGYNPAATNPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPY-PGTDL 226
++++G NP T G Y E+A + A++I++DP T+T P PGTD
Sbjct: 206 VVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDA 265
Query: 227 AIALAMLHVIIKEELYDKDFVAERVNNFD--ALARAVEK-----------------YTPE 267
A+ + +V+I E L D+ F+ + +D L + K TPE
Sbjct: 266 ALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPE 325
Query: 268 WAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKE 327
WA +I+GVPA I + A + A + G +HANG I AIS L +TGN+G
Sbjct: 326 WASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGIN 385
Query: 328 GVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIF 387
G SG G++ ++P V L P+ + + F +W + P + A+
Sbjct: 386 GGNSGAREGSY-----SLPFVRMPTLENPI---QTSISMF--MWTDAIERGPEM--TALR 433
Query: 388 DAM-----LEGKIKGIYIMGQN---PARSLANSSK--IEEALKRAFVVVADIFPTETTKY 437
D + L+ IK I+ N S N + +++ K +VV D T + KY
Sbjct: 434 DGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKY 493
Query: 438 ADIVLPAAAWYEKTGTVITQN----RRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEY 493
ADI+LP E+ + + V+ + Q +KP E K +E+ LAK +G+ +
Sbjct: 494 ADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQ 553
Query: 494 FNYSSVDD--------VLREINNVIPALKGATPERLAKNLE----GCMYPCPDENTETPR 541
F + RE +P + + + K + Y E+ +
Sbjct: 554 FTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANP 613
Query: 542 LFLKGFPTKSGKAEL-------IPVEWK-PPGEVPD-----------------EEYPFWL 576
L T SGK E+ I W+ P G+V D ++YP L
Sbjct: 614 L-----TTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQL 668
Query: 577 TNFRLVGQFHTGTMSN----RTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGS 632
T F + H+ T N + ++ W IN DA++ GI +GD VR+ RG
Sbjct: 669 TGFHYKSRVHS-TYGNVDVLKAACRQEMW------INPLDAQKRGIHNGDKVRIFNDRGE 721
Query: 633 LVARAEVTENIREGVVAM 650
+ A+VT + GVVA+
Sbjct: 722 VHIEAKVTPRMMPGVVAL 739
>sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE)
Length = 814
Score = 193 bits (485), Expect = 6e-48
Identities = 206/738 (27%), Positives = 317/738 (42%), Gaps = 115/738 (15%)
Query: 3 EKLIPVVCPW-CSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG----KLCPKGVSSYQHYV 57
EK+I C C C L + VDG + +E D G + C +G S +
Sbjct: 56 EKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVY 115
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL------AFLGS- 110
+PDRLK P+KRVG +GEGKFE ISWEEA +IIA + +++ +G E++ LG
Sbjct: 116 NPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGT 175
Query: 111 -ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKV 169
R N L+ +L G + G + + +GG A N DI SK+
Sbjct: 176 MTRSWPPGNTLVARLMNCCG-GYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKL 234
Query: 170 ILIWGYNPAATNPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPY-PGTDL 226
++++G NP T G Y E+A + A++I++DP T+T P PGTD
Sbjct: 235 VVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDA 294
Query: 227 AIALAMLHVIIKEELYDKDFVAERVNNFD--ALARAVEK-----------------YTPE 267
A+ + +V+I E L D+ F+ + +D L + K TPE
Sbjct: 295 ALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPE 354
Query: 268 WAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKE 327
WA +I+GVPA I + A + A + G +HANG I AIS L +TGN+G
Sbjct: 355 WASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGNVGIN 414
Query: 328 GVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIF 387
G SG G++ ++P V L P+ + + F +W + P + A+
Sbjct: 415 GGNSGAREGSY-----SLPFVRMPTLENPI---QTSISMF--MWTDAIERGPEM--TALR 462
Query: 388 DAM-----LEGKIKGIYIMGQN---PARSLANSSK--IEEALKRAFVVVADIFPTETTKY 437
D + L+ IK I+ N S N + +++ K +VV D T + KY
Sbjct: 463 DGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKY 522
Query: 438 ADIVLPAAAWYEKTGTVITQN----RRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEY 493
ADI+LP E+ + + V+ + Q +KP E K +E+ LAK +G+ +
Sbjct: 523 ADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQ 582
Query: 494 FNYSSVDD--------VLREINNVIPALKGATPERLAKNLE----GCMYPCPDENTETPR 541
F + RE +P + + + K + Y E+ +
Sbjct: 583 FTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANP 642
Query: 542 LFLKGFPTKSGKAEL-------IPVEWK-PPGEVPD-----------------EEYPFWL 576
L T SGK E+ I W+ P G+V D ++YP L
Sbjct: 643 L-----TTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQL 697
Query: 577 TNFRLVGQFHTGTMSN----RTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGS 632
T F + H+ T N + ++ W IN DA++ GI +GD VR+ RG
Sbjct: 698 TGFHYKSRVHS-TYGNVDVLKAACRQEMW------INPLDAQKRGIHNGDKVRIFNDRGE 750
Query: 633 LVARAEVTENIREGVVAM 650
+ A+VT + GVVA+
Sbjct: 751 VHIEAKVTPRMMPGVVAL 768
>gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductase subunit A [Yersinia pestis]
Length = 823
Score = 187 bits (470), Expect = 4e-46
Identities = 196/724 (27%), Positives = 318/724 (43%), Gaps = 108/724 (14%)
Query: 13 CSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG----KLCPKGVSSYQHYVHPDRLKKPLKR 68
C C L + DG + +E D +G + C +G S + +PDRLK P+KR
Sbjct: 76 CGSRCPLRMHVADGEIKYVETDNTGDDDFEGLHQVRACLRGRSMRRRVYNPDRLKYPMKR 135
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF---LGSERCSLEDNY-----L 120
+G +GEGKF+ ISWEEA E IA + I++ +G EA+ G+ ++ ++ L
Sbjct: 136 IGARGEGKFKRISWEEAFETIAGSMQNIIKEYGNEAIYLNYGTGTIGGTMTRSWPPGATL 195
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
L +L G ++ G + + +GG A N DI SK+++++G NPA T
Sbjct: 196 LARLMNCCGGYLNQY-GDYSTAQIAAGLNYTYGGWADGNSPSDIENSKLVVLFGNNPAET 254
Query: 181 NPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPY-PGTDLAIALAMLHVII 237
G Y E+A + AK+IV+DP T+TA P PGTD A+A A+ +V+I
Sbjct: 255 RMSGGGVTYYLEQAREKSNAKMIVIDPRYTDTAAGREDEWIPLRPGTDAALASALAYVMI 314
Query: 238 KEELYDKDFVAERVNNFD-----------------ALARAVEK--YTPEWAEKISGVPAS 278
E L D+ F+ + +D L + +K TP+WA I+G+PA+
Sbjct: 315 TENLVDQPFLDQYCVGYDEKTLPEGAPENSHYKAYILGQGADKTAKTPQWAAAITGIPAA 374
Query: 279 LIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH 338
I + A + G +H+NG T+ AI+ L +TGN+G G SG G++
Sbjct: 375 KIITLGREIGSVKPAYISQGWGPQRHSNGENTSRAIAMLAILTGNVGINGGNSGAREGSY 434
Query: 339 CGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIK-- 396
++P V PV + + F LW + P + A D ++GK K
Sbjct: 435 -----SLPFVRMPTFENPV---KTSISMF--LWTDAIERGPEM--TATRDG-VQGKDKLD 481
Query: 397 -GIYIMGQNPARSLANSSK--------IEEALKRAFVVVADIFPTETTKYADIVLPAAAW 447
I + + L N +++ K +VV D T + +YADI+LP
Sbjct: 482 VPIKFIWNYASNCLVNQHSEINRTHDILQDDKKCEMIVVIDNHMTSSAEYADIILPDCTA 541
Query: 448 YEKTGTVITQN----RRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYS-SVDDV 502
E+ + + V+ + Q +KP E K ++I LA+ +G+ + F + ++
Sbjct: 542 SEQMDFCLDASSGNMAYVIFADQVIKPRFECKNIYDITSGLARHMGVEQKFTEGRTQEEW 601
Query: 503 LREINN-------VIPALKGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAE 555
+R + +P+ + + + K + + + T + T SGK E
Sbjct: 602 MRHLYQQSQAAIPELPSFEDFRAQGMFKKRDPAGHHVAYHDFRTDPV-ANPLSTPSGKIE 660
Query: 556 L-------IPVEWK-PPGEVPD-----------------EEYPFWLTNFRLVGQFHTGTM 590
+ I W+ +V D E+YP LT F + H+ T
Sbjct: 661 IYSAALAEIAATWELQKDDVIDPLPVYAAGFESHVDPLIEQYPLQLTGFHYKARTHS-TY 719
Query: 591 SN----RTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREG 646
N + L++ W IN DA+R GI +GD+VR+ RG + A+VT + G
Sbjct: 720 GNVDVLKASCLQEMW------INPMDAERRGISNGDMVRIFNGRGEVQINAKVTPRMMPG 773
Query: 647 VVAM 650
VVA+
Sbjct: 774 VVAL 777
>sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173|pir||A57143
thiosulfate--dithiol sulfurtransferase (EC 2.8.1.5) phsA
chain - Salmonella typhimurium >gi|755676|gb|AAC36934.1|
(L32188) thiosulfate reductase [Salmonella typhimurium]
Length = 758
Score = 183 bits (461), Expect = 4e-45
Identities = 188/696 (27%), Positives = 304/696 (43%), Gaps = 89/696 (12%)
Query: 5 LIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKG-KLCPKGVSSYQHYVHPDRLK 63
L P +C CS C + V+ + + NP P +G ++C +G S P R+
Sbjct: 43 LTPSLCEMCSFRCPIQAQVVNN--KTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIV 100
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
KP+KR G +G+G+++ ISW++A + IA K I HGPE++AF S+ SL + L
Sbjct: 101 KPMKRTGPRGDGEWQVISWQQAYQEIAAKMNAIKAQHGPESVAF-SSKSGSLSSH--LFH 157
Query: 124 LARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYN------P 177
LA A G+ N C + +A + GG DI ++ ++ +G+N
Sbjct: 158 LATAFGSPNTFTHASTCPAGKAIAAKVMMGGDLAM----DIANTRYLVSFGHNLYEGIEV 213
Query: 178 AATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVII 237
A T+ ++ Q + GAK++ DP + + A PG DLA+ LAM HV+I
Sbjct: 214 ADTHELMTAQ-------EKGAKMVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMI 266
Query: 238 KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPAS-LIHEAAVLFATGGNATVV 296
E+LYD FV + F+ LA+AV++ TPEWA + VPA ++ L A +A V
Sbjct: 267 DEQLYDASFVERYTSGFEQLAQAVKETTPEWAAAQADVPADVIVRVTRELAACAPHAIVS 326
Query: 297 LNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGP 356
I L + GNI +EG G+ + + + G A P
Sbjct: 327 PGHRATFSQEEIDMRRMIFTLNVLLGNIEREG---GLYQKKNASVYNKLAGEKVA--PTL 381
Query: 357 VPLN-----EETAKKFSELW-GFEVPSKPGLHYQAIFDAMLEGK---IKGIYIMGQNPAR 407
LN + TA++ + F+ + G Q+I D+ L K IK + NP +
Sbjct: 382 AKLNIKNMPKPTAQRIDLVAPQFKYIAAGGGVVQSIIDSALTQKPYPIKAWIMSRHNPFQ 441
Query: 408 SLANSSKIEEALKRAFVVVA-DIFPTETTKYADIVLPAAAWYEKTGTVITQN----RRVM 462
++ S + + +++ +VV+ D++ +E+ YAD +LP + E+ V + +
Sbjct: 442 TVTCRSDLVKTVEQLDLVVSCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYAL 501
Query: 463 RSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDD-VLREINNVIPALKGATPERL 521
R Q V+P GEA+P W+I L + +GLG+Y+ + + L ++N L
Sbjct: 502 RQ-QVVEPIGEARPSWQIWKELGEQLGLGQYYPWQDMQTRQLYQLNG---------DHAL 551
Query: 522 AKNLEGCMY-----PCPDENTETPRLFLKGFP------------------TKSGKAELIP 558
AK L Y P E+ R F +P + SGK EL
Sbjct: 552 AKELRQKGYLEWGVPLLLREPESVRQFTARYPGAIATDSDNTYGEQLRFKSPSGKIELYS 611
Query: 559 V---EWKPPGEVP-------DEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMI 608
E P VP +E + ++ HT + L + V +
Sbjct: 612 ATLEELLPGYGVPRVRDFALKKENELYFIQGKVA--VHTNGATQYVPLLSELMWDNAVWV 669
Query: 609 NERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR 644
+ + A+ GI++GD + +E G +A VT IR
Sbjct: 670 HPQTAQEKGIKTGDEIWLENATGKEKGKALVTPGIR 705
>gb|AAA16399.1| (U00008) yojC [Escherichia coli]
Length = 809
Score = 180 bits (451), Expect = 6e-44
Identities = 140/523 (26%), Positives = 237/523 (44%), Gaps = 56/523 (10%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
C +C GC + + + G R + +P P N+G C KG + DRL++PL R
Sbjct: 27 CRFCGTGCGVLVGTQQG--RVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLRQPLLR 84
Query: 69 VGE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
+ EG+F I+W++A +++ +KFK L+ GPE++ GS + ++ + Y KL
Sbjct: 85 MKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLF 144
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
+A +NN++ R C +S V + FG +DDI ++ ++WG N A +P+L
Sbjct: 145 KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPIL 204
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + + + + + V+ + + + A + P +DL I + + II+ ++
Sbjct: 205 WSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQ 264
Query: 245 DFVAERVN---------------------------------NFDALARAVEKYTPEWAEK 271
DF ++ VN +F+ V +YT E +
Sbjct: 265 DFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAE 324
Query: 272 ISGVPASLIHEAAVLFATGGNATV-VLNEGINQHANGSITAMAISNLIAITGNIGKEGV- 329
++GVP + + A L+A + G NQH G + NL +TG I + G
Sbjct: 325 MTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCG 384
Query: 330 -FSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSE-LWGF---EVPSKPGLHYQ 384
FS + CG V G +LP + + E + E W +P+K GLH
Sbjct: 385 PFSLTGQPSACGTAREV-GTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAV 443
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-----KRAFVVVADIFPTETTKYAD 439
A A+ +GK+ + M N ++ N + EE + R F++V+D +PT + AD
Sbjct: 444 AQDRALKDGKLNVYWTMCTNNMQAGPNIN--EERMPGWRDPRNFIIVSDPYPTVSALAAD 501
Query: 440 IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII 481
++LP A W EK G RR Q V+ PGEAK D W+++
Sbjct: 502 LILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLV 544
Score = 85.8 bits (209), Expect = 1e-15
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 545 KGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGP 604
K + GKA + + ++P E PDEEY WL+ R++ +HTG+M+ R L + +P
Sbjct: 666 KFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEA 725
Query: 605 YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTK- 661
+ I+ DAK +R GD V+V +RRG +++ E R +G+V MP+ + K
Sbjct: 726 VLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKL 785
Query: 662 -DDAIDEFSKMPELKTAACRISKV 684
DA D SK + K A ++ KV
Sbjct: 786 TLDATDPLSKETDFKKCAVKLEKV 809
>dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4). [Escherichia
coli]
Length = 757
Score = 178 bits (448), Expect = 1e-43
Identities = 140/523 (26%), Positives = 236/523 (44%), Gaps = 56/523 (10%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
C +C GC + + + G R + +P P N+G C KG + DRL +PL R
Sbjct: 46 CRFCGTGCGVLVGTQQG--RVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLR 103
Query: 69 VGE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
+ EG+F I+W++A +++ +KFK L+ GPE++ GS + ++ + Y KL
Sbjct: 104 MKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLF 163
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
+A +NN++ R C +S V + FG +DDI ++ ++WG N A +P+L
Sbjct: 164 KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPIL 223
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + + + + + V+ + + + A + P +DL I + + II+ ++
Sbjct: 224 WSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQ 283
Query: 245 DFVAERVN---------------------------------NFDALARAVEKYTPEWAEK 271
DF ++ VN +F+ V +YT E +
Sbjct: 284 DFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAE 343
Query: 272 ISGVPASLIHEAAVLFATGGNATV-VLNEGINQHANGSITAMAISNLIAITGNIGKEGV- 329
++GVP + + A L+A + G NQH G + NL +TG I + G
Sbjct: 344 MTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCG 403
Query: 330 -FSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSE-LWGF---EVPSKPGLHYQ 384
FS + CG V G +LP + + E + E W +P+K GLH
Sbjct: 404 PFSLTGQPSACGTAREV-GTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAV 462
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-----KRAFVVVADIFPTETTKYAD 439
A A+ +GK+ + M N ++ N + EE + R F++V+D +PT + AD
Sbjct: 463 AQDRALKDGKLNVYWTMCTNNMQAGPNIN--EERMPGWRDPRNFIIVSDPYPTVSALAAD 520
Query: 440 IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII 481
++LP A W EK G RR Q V+ PGEAK D W+++
Sbjct: 521 LILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLV 563
>sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|7431435|pir||D64990
probable nitrate reductase (EC 1.7.99.4) - Escherichia
coli (strain K-12) >gi|1788534|gb|AAC75266.1|
(AE000309) probable nitrate reductase 3 [Escherichia
coli K12]
Length = 828
Score = 178 bits (448), Expect = 1e-43
Identities = 140/523 (26%), Positives = 236/523 (44%), Gaps = 56/523 (10%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
C +C GC + + + G R + +P P N+G C KG + DRL +PL R
Sbjct: 46 CRFCGTGCGVLVGTQQG--RVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLR 103
Query: 69 VGE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLA 125
+ EG+F I+W++A +++ +KFK L+ GPE++ GS + ++ + Y KL
Sbjct: 104 MKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLF 163
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
+A +NN++ R C +S V + FG +DDI ++ ++WG N A +P+L
Sbjct: 164 KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPIL 223
Query: 185 FGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ + + + + + V+ + + + A + P +DL I + + II+ ++
Sbjct: 224 WSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQ 283
Query: 245 DFVAERVN---------------------------------NFDALARAVEKYTPEWAEK 271
DF ++ VN +F+ V +YT E +
Sbjct: 284 DFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAE 343
Query: 272 ISGVPASLIHEAAVLFATGGNATV-VLNEGINQHANGSITAMAISNLIAITGNIGKEGV- 329
++GVP + + A L+A + G NQH G + NL +TG I + G
Sbjct: 344 MTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCG 403
Query: 330 -FSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSE-LWGF---EVPSKPGLHYQ 384
FS + CG V G +LP + + E + E W +P+K GLH
Sbjct: 404 PFSLTGQPSACGTAREV-GTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAV 462
Query: 385 AIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-----KRAFVVVADIFPTETTKYAD 439
A A+ +GK+ + M N ++ N + EE + R F++V+D +PT + AD
Sbjct: 463 AQDRALKDGKLNVYWTMCTNNMQAGPNIN--EERMPGWRDPRNFIIVSDPYPTVSALAAD 520
Query: 440 IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPD-WEII 481
++LP A W EK G RR Q V+ PGEAK D W+++
Sbjct: 521 LILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLV 563
Score = 85.8 bits (209), Expect = 1e-15
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 545 KGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGP 604
K + GKA + + ++P E PDEEY WL+ R++ +HTG+M+ R L + +P
Sbjct: 685 KFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEA 744
Query: 605 YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR--EGVVAMPWHWGFNYLTK- 661
+ I+ DAK +R GD V+V +RRG +++ E R +G+V MP+ + K
Sbjct: 745 VLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKL 804
Query: 662 -DDAIDEFSKMPELKTAACRISKV 684
DA D SK + K A ++ KV
Sbjct: 805 TLDATDPLSKETDFKKCAVKLEKV 828
>sp|P39185|NAPA_ALCEU PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|538718|pir||A48489
nitrate reductase (EC 1.7.99.4) A chain precursor,
periplasmic - Alcaligenes eutrophus (strain H16)
>gi|402547|emb|CAA50507.1| (X71385) NAPA [Ralstonia
eutropha]
Length = 831
Score = 178 bits (446), Expect = 2e-43
Identities = 158/591 (26%), Positives = 252/591 (41%), Gaps = 67/591 (11%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + D + D + NKG C KG + DRL +PL R+
Sbjct: 48 CRFCGTGCGVTVAVKDNKVVATQGDPQAEV-NKGLNCVKGYFLSKIMYGQDRLTRPLMRM 106
Query: 70 GE---KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLAR 126
G F ++W++A + + ++FK +L+ GP A+A + ++ + Y KL +
Sbjct: 107 KNGKYDKNGDFAPVTWDQAFDEMERQFKRVLKEKGPTAVACSAPAQWTVWEGYAAAKLYK 166
Query: 127 A-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
A +NN++ R C +S + FG +DD + ++WG N A +P+L+
Sbjct: 167 AGFRSNNIDPNARHCMASAAAGFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMHPILW 226
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ ++ + +++V+ A I + P TDLA+ + + II+ +KD
Sbjct: 227 TRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIFKPQTDLAMLNYIANYIIRNNKVNKD 286
Query: 246 FV----------------------------------AERVNNFDALARAVEKYTPEWAEK 271
FV A +V FD A+ V KY ++ K
Sbjct: 287 FVNKHTVFKEGVTDIGYGLRPDHPLQKAAKNASDPGAAKVITFDEFAKFVSKYDADYVSK 346
Query: 272 ISGVPASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEG-- 328
+S VP + + + A L+A + L G NQH G+ + NL +TG I G
Sbjct: 347 LSAVPKAKLDQLAELYADPNIKVMSLWTMGFNQHTRGTWANNMVYNLHLLTGKIATPGNS 406
Query: 329 VFSGVIPGAHCGLCAAVPGVNCAQLPGPV----PLNEETAKKFSELWGFEVPSKPGLHYQ 384
FS + CG V G +LP + P + E A++ +L +P KPG Y
Sbjct: 407 PFSLTGQPSACGTAREV-GTFSHRLPADMVVTNPKHREEAERIWKLPPGTIPDKPG--YD 463
Query: 385 AIFDAML--EGKIKGIYIMGQNPARSLANSSKIEEALK-----RAFVVVADIFPTETTKY 437
A+ + +GK+ ++ N ++ AN +EE L F+VV+D +PT T
Sbjct: 464 AVLQNRMLKDGKLNAYWVQVNNNMQAAANL--MEEGLPGYRNPANFIVVSDAYPTVTALA 521
Query: 438 ADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYS 497
AD+VLP+A W EK G RR Q V PGEA+ D +V AK + E +
Sbjct: 522 ADLVLPSAMWVEKEGAYGNAERRTQFWHQLVDAPGEARSDLWQLVEFAKRFKVEEVWP-- 579
Query: 498 SVDDVLREINNVIPALKGAT-PERLAKNLEGCMYPCPDENTETPRLFLKGF 547
E+ P KG T + L +N + +P D N E K F
Sbjct: 580 ------PELIAKKPEYKGKTLYDVLYRNGQVDKFPLKDVNAEYHNAEAKAF 624
Score = 85.8 bits (209), Expect = 1e-15
Identities = 48/137 (35%), Positives = 74/137 (53%), Gaps = 4/137 (2%)
Query: 552 GKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINER 611
GKA + + ++PP E PD+EYP+WL R++ +H+G+M+ R L + +P V ++
Sbjct: 695 GKAVIFALPYEPPAESPDKEYPYWLVTGRVLEHWHSGSMTRRVPELYRSFPNAVVFMHPE 754
Query: 612 DAKRLGIRSGDLVRVETRRGSLVARAEV--TENIREGVVAMPWHWGFNYLTKD--DAIDE 667
DAK LG+R G V V +RRG + +R E + G+V +PW + K DA
Sbjct: 755 DAKALGLRRGVEVEVVSRRGRMRSRIETRGRDAPPRGLVFVPWFDASQLINKVTLDATCP 814
Query: 668 FSKMPELKTAACRISKV 684
S + K A +I KV
Sbjct: 815 ISLQTDFKKCAVKIVKV 831
>emb|CAB92217.1| (AL356592) nitrate reductase (fragment). [Streptomyces coelicolor
A3(2)]
Length = 508
Score = 176 bits (441), Expect = 9e-43
Identities = 138/455 (30%), Positives = 200/455 (43%), Gaps = 77/455 (16%)
Query: 299 EGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGA-------HCGLCAAVPGVNCA 351
+G+ Q + A+ ++NL I G +G+ G + G CG +PG
Sbjct: 12 QGVYQSHQATAAAVQVNNLHLIRGMLGRPGAGLLQMNGQPTAQNTRECGANGDLPGFRNW 71
Query: 352 QLPGPVPLNEETAKKFSELWGFEVPS----KPGLHYQAIFDAMLEGKIKGIYIMGQNPAR 407
Q N+ + +W E + P H IF +G ++ ++I G NPA
Sbjct: 72 Q-------NDAHVADLARVWNVEPETIPHFAPPTHAMQIFRYAEQGSLRMLWISGTNPAV 124
Query: 408 SLANSSKIEEAL--KRAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSF 465
S+ +I L +R F VV D++ TET + AD+VLPAA W EKTG + +R V S
Sbjct: 125 SMPELPRIRSILSQERLFTVVQDLYLTETARLADVVLPAATWGEKTGALTNADRTVHLSR 184
Query: 466 QAVKPPGEAKPDWEIIVMLAKSIGLGE--------YFNYSSVDDVLREINNVIPALKGAT 517
+AV+PPGEA+PD +I + A+ + + + S + + + P
Sbjct: 185 KAVEPPGEARPDLDIFLDYARRMDFRDKDGGPLIPWDGPESAFEAWKRCSAGRPCDYTGL 244
Query: 518 PERLAKNLEGCMYPCPDENTE-TPRLFLKGFP---------------------------- 548
++ G +PC D E T RL+ GF
Sbjct: 245 SYAKLRDTSGIQWPCDDRAPEGTARLYTDGFGWAHPDVCESYGKDLETGASQEVVEYRSL 304
Query: 549 TKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMI 608
G+A L + PP E PDEEYPF LT R + FHT T + R L P +V +
Sbjct: 305 NPDGRAMLKAAAYLPPHEEPDEEYPFQLTTGRTLYHFHTRTKTGRAPQLNDAAPDVWVEV 364
Query: 609 NERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGF------------ 656
+ DA+RLG+ GDLV V +RRGSL R VT IR G++ +P+H+G+
Sbjct: 365 SAGDAERLGLGEGDLVEVTSRRGSLRGRLRVT-GIRTGLLFVPFHYGYWDTAGGSGPGPD 423
Query: 657 ------NYLTKDDAIDEFSKMPELKTAACRISKVE 685
N T D D SK P KTAA ++ VE
Sbjct: 424 TPGRAANETTVTD-WDPASKQPLFKTAAAALTLVE 457
>pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 precursor,
anaerobic - Escherichia coli >gi|1742611|dbj|BAA15312.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742622|dbj|BAA15322.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787871|gb|AAC74660.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 175 bits (439), Expect = 2e-42
Identities = 189/683 (27%), Positives = 292/683 (42%), Gaps = 96/683 (14%)
Query: 44 KLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE 103
+ C +G S + HPDRLK P+KRVG++GEGKFE ISW+EA++ I+ + IL+ +G E
Sbjct: 98 RACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNE 157
Query: 104 ALAFL---GSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNP 160
A+ L G + ++ ++ + +L + G + G + A S +FG +P
Sbjct: 158 AVHVLYGTGVDGGNITNSNVPYRLMNSCG-GFLSRYGSYSTAQISAAMSYMFGANDGNSP 216
Query: 161 FDDIVKSKVILIWGYNPAATNPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYAHIHL 218
DDI +K+++++G NPA T G Y E+A + A++IV+DP +TA
Sbjct: 217 -DDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEW 275
Query: 219 QPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFD-----ALARAVEKY-------- 264
P PGTD A+A A+ V+I E + D+ F+ + +D A A Y
Sbjct: 276 LPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG 335
Query: 265 ------TPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLI 318
TPEWA KI+ +PA I + A + A + G +H+NG T+ AI+ L
Sbjct: 336 PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLS 395
Query: 319 AITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSK 378
+TGN+G G SGV G+ GV P+ E K ++ +
Sbjct: 396 VLTGNVGINGGNSGVREGSW------DLGVEW------FPMLENPVKTQISVFTWTDAID 443
Query: 379 PGLHYQAIFDAM-----LEGKIKGIYIMGQNPARSLANS--------SKIEEALKRAFVV 425
G A D + L+ IK ++ N +L N +++ K +V
Sbjct: 444 HGTEMTATRDGVRGKEKLDVPIKFLWCYASN---TLINQHGDINHTHEVLQDDSKCEMIV 500
Query: 426 VADIFPTETTKYADIVLPAAAWYEKTGTVITQNR----RVMRSFQAVKPPGEAKPDWEII 481
D F T + KY DI+LP E+ + ++ V+ + A E KP + ++
Sbjct: 501 GIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWML 560
Query: 482 VMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPE----RLAKNLEGCMYPCPDENT 537
+AK +G Y ++ I + K PE K CP+E+
Sbjct: 561 SEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHY 620
Query: 538 ETPRLFLKG-----FPTKSGKAELI--------------------PVEWKPPG-----EV 567
R F + T SGK E+ P+ PG +
Sbjct: 621 VAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDP 680
Query: 568 PDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVE 627
+ YP LT F + H+ L++ P V IN DA+ GIR GD VRV
Sbjct: 681 LRKTYPLQLTGFHYKARTHSS--YGNIDVLQQACP-QEVWINPIDAQARGIRHGDTVRVF 737
Query: 628 TRRGSLVARAEVTENIREGVVAM 650
G ++ A+VT I GV A+
Sbjct: 738 NNNGEMLIAAKVTPRILPGVTAI 760
>sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN YNFF PRECURSOR (DMSO
REDUCTASE)
Length = 807
Score = 175 bits (439), Expect = 2e-42
Identities = 189/683 (27%), Positives = 292/683 (42%), Gaps = 96/683 (14%)
Query: 44 KLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE 103
+ C +G S + HPDRLK P+KRVG++GEGKFE ISW+EA++ I+ + IL+ +G E
Sbjct: 97 RACLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNE 156
Query: 104 ALAFL---GSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNP 160
A+ L G + ++ ++ + +L + G + G + A S +FG +P
Sbjct: 157 AVHVLYGTGVDGGNITNSNVPYRLMNSCG-GFLSRYGSYSTAQISAAMSYMFGANDGNSP 215
Query: 161 FDDIVKSKVILIWGYNPAATNPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYAHIHL 218
DDI +K+++++G NPA T G Y E+A + A++IV+DP +TA
Sbjct: 216 -DDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEW 274
Query: 219 QPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFD-----ALARAVEKY-------- 264
P PGTD A+A A+ V+I E + D+ F+ + +D A A Y
Sbjct: 275 LPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG 334
Query: 265 ------TPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLI 318
TPEWA KI+ +PA I + A + A + G +H+NG T+ AI+ L
Sbjct: 335 PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAMLS 394
Query: 319 AITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSK 378
+TGN+G G SGV G+ GV P+ E K ++ +
Sbjct: 395 VLTGNVGINGGNSGVREGSW------DLGVEW------FPMLENPVKTQISVFTWTDAID 442
Query: 379 PGLHYQAIFDAM-----LEGKIKGIYIMGQNPARSLANS--------SKIEEALKRAFVV 425
G A D + L+ IK ++ N +L N +++ K +V
Sbjct: 443 HGTEMTATRDGVRGKEKLDVPIKFLWCYASN---TLINQHGDINHTHEVLQDDSKCEMIV 499
Query: 426 VADIFPTETTKYADIVLPAAAWYEKTGTVITQNR----RVMRSFQAVKPPGEAKPDWEII 481
D F T + KY DI+LP E+ + ++ V+ + A E KP + ++
Sbjct: 500 GIDHFMTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWML 559
Query: 482 VMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPE----RLAKNLEGCMYPCPDENT 537
+AK +G Y ++ I + K PE K CP+E+
Sbjct: 560 SEVAKRLGPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHY 619
Query: 538 ETPRLFLKG-----FPTKSGKAELI--------------------PVEWKPPG-----EV 567
R F + T SGK E+ P+ PG +
Sbjct: 620 VAFRAFREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDP 679
Query: 568 PDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVE 627
+ YP LT F + H+ L++ P V IN DA+ GIR GD VRV
Sbjct: 680 LRKTYPLQLTGFHYKARTHSS--YGNIDVLQQACP-QEVWINPIDAQARGIRHGDTVRVF 736
Query: 628 TRRGSLVARAEVTENIREGVVAM 650
G ++ A+VT I GV A+
Sbjct: 737 NNNGEMLIAAKVTPRILPGVTAI 759
>pir||B69076 catalytic subunit of nitrate reductase (flp) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622690|gb|AAB86041.1| (AE000917) catalytic subunit
of nitrate reductase (flp) [Methanobacterium
thermoautotrophicum]
Length = 666
Score = 169 bits (424), Expect = 9e-41
Identities = 135/486 (27%), Positives = 227/486 (45%), Gaps = 42/486 (8%)
Query: 13 CSVGCRLYIVSVDGYPRKIE-FDYNPKTPNKGKLCPKGVSSYQHYVHPDR-LKKPLKRVG 70
C C L + G IE +P T +G +C + ++ DR + KPLKR G
Sbjct: 11 CPGSCGLTVNVSRGKVNSIEGSSIHPHT--RGFICKNTARYHVRRLYSDRRVLKPLKRDG 68
Query: 71 EKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARALGT 130
+ ++ ISW+EA+ +I+ K E ++ HG E++ + L ++ +G
Sbjct: 69 RQ----WKTISWDEALHVISDKLNECMDEHGAESIVYYQGFGARTALRLLNRRFFNLIGA 124
Query: 131 NNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFE 190
+ G LC + A+SK FG +P D + S+ I IWG NPA T+ L+
Sbjct: 125 TTLR--GTLCGGAAIAAQSKDFGRRLSHDPSDHL-NSRNIFIWGRNPAVTDINLWR--II 179
Query: 191 KAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAER 250
K +G ++I +DP++T+TA + IH Q G DL +A+AM +I+ EEL+D F+ +
Sbjct: 180 KRAQKHGTRVITIDPIRTQTAVKSDIHCQIEAGKDLYLAIAMAKIIMAEELHDSGFIEKH 239
Query: 251 VNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSIT 310
NFD+ ++++ ++SGVP +I + A L+ + G ++++L G+ ++ N +
Sbjct: 240 AENFDSYIEILDEFNLNQLSELSGVPLKIISKLAHLY-SDGPSSIILGWGLQRYFNSYMA 298
Query: 311 AMAISNLIAITGNIGKE--GVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFS 368
I L AI+G IG GV SG + G + K
Sbjct: 299 CRFIDALAAISGYIGVSGGGVSSGFDEYGAFDESVTLEGAGNGR------------KVSM 346
Query: 369 ELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA-FVVVA 427
L+G E+ + M + ++I NP NS + AL+ FVV+
Sbjct: 347 PLFGREIVN------------MNSPTVNCVFITAGNPVTLGPNSIQTLNALREVDFVVMV 394
Query: 428 DIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQ-AVKPPGEAKPDWEIIVMLAK 486
D+F +T AD+ LPA + E+T V + + AVKP GE+ ++ I+ L++
Sbjct: 395 DLFLNDTAHTADLFLPATTFLEETDLVGSYGHPYVSPVNAAVKPLGESHSEFWILQRLSE 454
Query: 487 SIGLGE 492
+G +
Sbjct: 455 IMGFAD 460
>emb|CAB76275.1| (AL158057) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 355
Score = 168 bits (422), Expect = 2e-40
Identities = 97/278 (34%), Positives = 155/278 (54%), Gaps = 5/278 (1%)
Query: 41 NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESH 100
N+G+L PK + +Q DRL +PL R +G+ E W+ A++++A + +E+L+S
Sbjct: 79 NRGRLGPKDLFGWQANASRDRLTRPLVR----RDGQLVETDWDTAMDLVAARSRELLDSR 134
Query: 101 GPEALAFLGSERCSLEDNYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTN 159
GP ++ F S + LE+ Y L LARA +GTN+++ RLC S+ A + FG Q
Sbjct: 135 GPGSIGFYTSGQLFLEEYYTLAVLARAGIGTNHLDGNTRLCTSTAAEALKESFGCDGQPG 194
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQ 219
+DD + VI ++G+N A T PV + + ++ + +L+ VDP T A++A +HL
Sbjct: 195 SYDDFDHADVIALFGHNIAETQPVQWMRLLDRLEGADPPRLLCVDPRPTRVAEHAAVHLA 254
Query: 220 PYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASL 279
P GT++A+ A+LH I+ E D+DF+ F LA V TP+WA +I VPA+
Sbjct: 255 PRSGTNVALLNALLHETIRHERIDRDFIDAHTVGFGELAARVADCTPKWAAEICDVPAAR 314
Query: 280 IHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNL 317
I EAA L T + +G+ Q + A+ ++NL
Sbjct: 315 IEEAAELVGTAEALVSTVLQGVYQSHQATAAAVQVNNL 352
>pir||D83205 probable oxidoreductase PA3534 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949683|gb|AAG06922.1|AE004773_11
(AE004773) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 702
Score = 164 bits (412), Expect = 2e-39
Identities = 183/694 (26%), Positives = 298/694 (42%), Gaps = 78/694 (11%)
Query: 1 MAEKLIPVVCPWCSVGCRLYIVSVD---GYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHY 56
M++ L C C C L I + G PR +P+ ++G +CPK V+
Sbjct: 1 MSKTLHYRACHLCEAICGLAIETESDEGGVPRIRSIKGDPQDSFSRGHVCPKAVALQDIQ 60
Query: 57 VHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF------LGS 110
PDRL++PL+RVG + ++ I W+EA ++A + EI E HG +A+A + +
Sbjct: 61 DDPDRLRQPLRRVGSE----WQPIGWDEAFALVASRLGEIRERHGNDAVAVYQGNPSVHN 116
Query: 111 ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVI 170
NY L L T N A + Q + + +++G P DI + +
Sbjct: 117 YGLMTHSNYFLGLLK----TRNRFSATSVDQLPHHLVSQQMYGHGLLI-PIPDIDHTDFM 171
Query: 171 LIWGYNPAATNPVLFG----QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDL 226
L+ G NP A+N + + KA+ G +L+VVDP ++ETA A HL PG D
Sbjct: 172 LVLGGNPLASNGSIMTVPDVEKRLKALKARGGRLVVVDPRRSETAAIADRHLFIRPGQDA 231
Query: 227 AIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVL 286
A+ L +L+ + +E L + V+ + + AV + E GVPA I + A
Sbjct: 232 ALLLGILNTLFEENLGRPTPLP--VDGLERVREAVAVFDAESMSARCGVPAESIRQLARD 289
Query: 287 FATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP 346
FA A G++ A G++ + + +TGN+ + G + L A+
Sbjct: 290 FAAAERAVCYGRMGVSTQAFGTLCQWLVQLINLVTGNLDRVG--GALCTSPALDLVASTS 347
Query: 347 GVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAML---EGKIKGIYIMGQ 403
G + + V E +G E+P A+ + +L EG+++ + +
Sbjct: 348 GGHFGRWRSRVSGLPE--------YGGELP------VAALAEEILGEGEGQVRALVTVAG 393
Query: 404 NPARSLANSSKIEEALK-RAFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQN---- 458
NP S N ++E+AL F++ D++ ETT+YAD++LP A E T N
Sbjct: 394 NPVLSTPNGRRLEQALDGLEFMLSIDLYINETTRYADLILPPTAPLEHDHYDTTFNVFAV 453
Query: 459 RRVMRSFQAVKP-PGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKGAT 517
R V R +AV P P A DWEI V LA++ + + I+ + A GA
Sbjct: 454 RNVTRFNEAVLPRPEGALHDWEIFVGLARAFAARNGLELKPTLEPQQMIDLGLRA--GAY 511
Query: 518 PERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIP--------VEWKPPGEVPD 569
+R L + T R G + L P ++ PP V D
Sbjct: 512 GDRSEHRL----------SLATLREHPHGIDLGPLRPNLAPRLKTADQRIQAAPPLFVDD 561
Query: 570 EE----YPFWLTN-FRLVGQFH---TGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
+ P ++ L+G+ H + + L K P ++++ RD + G+ G
Sbjct: 562 LQRFAAQPLPASDQLLLIGRRHVRSNNSWMHNYHRLVKGKPRHQLLMHPRDLEGRGLVDG 621
Query: 622 DLVRVETRRGSLVARAEVTENIREGVVAMPWHWG 655
VRV +R GS+ + + GVV++P WG
Sbjct: 622 QRVRVRSRVGSVEVEVAASSEMMPGVVSLPHGWG 655
>pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 precursor,
anaerobic - Escherichia coli >gi|1742610|dbj|BAA15311.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742621|dbj|BAA15321.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787870|gb|AAC74659.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 164 bits (411), Expect = 3e-39
Identities = 192/693 (27%), Positives = 291/693 (41%), Gaps = 103/693 (14%)
Query: 44 KLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE 103
+ C +G S + HPDRL P+KRVG++GEGKFE ISW+EA++ IA K+ +E +G E
Sbjct: 94 RACLRGRSIRRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNE 153
Query: 104 ALAFL-------GSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA 156
A+ G+ S +++L G + ++ ++ G
Sbjct: 154 AVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGS--YSTAQISCAMPYTYGSN 211
Query: 157 QTNPFDDIVKSKVILIWGYNPAATNPVLFG--QYFEKAILDNGAKLIVVDPVKTETAKYA 214
N DI SK+++++G NPA T G EKA + AK+IV+DP T+TA
Sbjct: 212 DGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGR 271
Query: 215 HIHLQPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFD-----------------A 256
P PGTD A+ + V+I E L D+ F+ + +D
Sbjct: 272 EDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYI 331
Query: 257 LARAVEK--YTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAI 314
L +K TP+WA +I+G+P I + A T A + G + ANG +TA AI
Sbjct: 332 LGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAI 391
Query: 315 SNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFE 374
+ L +TGN+G G SG + +P L PV + + FS W
Sbjct: 392 AMLPILTGNVGISGGNSGARESTYTITIERLP-----VLDNPV---KTSISCFS--WTDA 441
Query: 375 VPSKPGLHYQAIFDAM-----LEGKIKGIY-IMGQNPARSLANSSKIEEAL----KRAFV 424
+ P + AI D + L+ IK I+ G ++ +K E L K +
Sbjct: 442 IDHGPQM--TAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMI 499
Query: 425 VVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKP----PGEAKPDWEI 480
VV + F T + KYADI+LP E+ + M ++P E KP + I
Sbjct: 500 VVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWI 559
Query: 481 IVMLAKSIGLGEYFNYS---SVDDVLREINNVIPALKGATP-----------ERLAKNLE 526
+ +AK +G Y ++ + + L+ + + A A P +R N
Sbjct: 560 LSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGH 619
Query: 527 GCMYPCPDENTETPRLFLKGFPTKSGKAEL-------IPVEWKPPGEVPDEEYPFWLTNF 579
Y ++ E L T SGK E+ I W+ + P + + F
Sbjct: 620 FVAYKAFRDDPEANPL-----KTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTF 674
Query: 580 -------------RLVGQFHTGTMSNRTK---SLKKRWPGPYVMINERDAKRLGIRSGDL 623
+L G FH + ++ T L K V IN DA++ GI +GD+
Sbjct: 675 EGWNSPERRTFPLQLFG-FHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDM 733
Query: 624 VRVETRRGSLVARAEVTENIREGVVAM---PWH 653
VRV RG + A+VT I GV AM WH
Sbjct: 734 VRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWH 766
>sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|1073907|pir||H64083 biotin sulfoxide reductase (EC
1.-.-.-) - Haemophilus influenzae (strain Rd KW20)
>gi|1573641|gb|AAC22303.1| (U32747) biotin sulfoxide
reductase (bisC) [Haemophilus influenzae Rd]
Length = 825
Score = 163 bits (409), Expect = 5e-39
Identities = 197/784 (25%), Positives = 321/784 (40%), Gaps = 120/784 (15%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLK 63
K + W S+G +V DG K P PN+ + V + Q Y R+K
Sbjct: 46 KTVVTAAHWGSIG----VVVQDGKVVKSGPAIEPAVPNELQT----VVADQLYSER-RVK 96
Query: 64 KPLKRVG-----------EKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSE- 111
P+ R G +G ++ +SW+EA++++ + K + + HG + F GS
Sbjct: 97 CPMVRKGFLANPGKSDTTMRGRDEWVRVSWDEALDLVHNQLKRVRDEHGSTGI-FAGSYG 155
Query: 112 --RCSL--EDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTNPFDD 163
C LLQ+ A G V G + V + G QT+
Sbjct: 156 WFSCGSLHASRTLLQRYMNATG-GFVGHKGDYSTGAAQVIMPHVLGTIEVYEQQTSWESI 214
Query: 164 IVKSKVILIWGYNPAATNPVLF------GQYFEKAILDNGAKLIVVDPVKTETAKYAHIH 217
+ S +I++W NP T + + G + K +G ++I +DP K+ET + +
Sbjct: 215 LESSDIIVLWSANPLTTMRIAWMSTDQKGIEYFKKFQASGKRIICIDPQKSETCQMLNAE 274
Query: 218 LQPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTPEWAE 270
P TD+ + L + H ++++ +DKDF+ + + + + + T EWA
Sbjct: 275 WIPVNTATDVPLMLGIAHTLVEQGKHDKDFLKKYTSGYAKFEEYLLGKTDGQPKTAEWAA 334
Query: 271 KISGVPASLIHEAAVLFATGGNATVVLNE-GINQHANGSITAMAISNLIAITGNIGKEG- 328
KI GVPA I + A FA+ T+++ G+ + +G T + L ++ G IG G
Sbjct: 335 KICGVPAETIKQLAADFAS--KRTMLMGGWGMQRQRHGEQTHWMLVTLASMLGQIGLPGG 392
Query: 329 -------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGL 381
+G +P A G+ ++ + L++ + F +V PG
Sbjct: 393 GFGLSYHYSNGGVPTATGGIIGSITASPSGKAGAKTWLDDTSKSAFPLARIADVLLHPGK 452
Query: 382 HYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA-FVVVADIFPTETTKYADI 440
Q + IK +Y G NP +++ + +A ++ V+V ++ T T + ADI
Sbjct: 453 KIQYNGTEITYPDIKAVYWAGGNPFVHHQDTNTLVKAFQKPDVVIVNEVNWTPTARMADI 512
Query: 441 VLPAAAWYEKTGTVITQNRRVMRSF---QAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYS 497
VLPA YE+ + + +M + Q V P EAK D++I V LAK G+ E +
Sbjct: 513 VLPATTSYERNDLTMAGDYSMMSVYPMKQVVPPQFEAKNDYDIFVELAKRAGVEEQYTEG 572
Query: 498 SVD-DVLREINNVIPALKGATPERLAKNLEGCMY----PCPDENTETPRLF--------- 543
+ + L E N A A R+A + P E E + +
Sbjct: 573 KTEMEWLEEFYNA--AFSAARANRVAMPRFDKFWAENKPLSFEAGEAAKKWVRYGEFRED 630
Query: 544 --LKGFPTKSGKAELIP--------------VEWKPPGEVP---DEEYPFWLTN----FR 580
L T SGK E+ W P E EEYP L +R
Sbjct: 631 PLLNPLGTPSGKIEIFSDVVEKMNYNDCKGHPSWMEPEEFAGNVTEEYPLALVTPHPYYR 690
Query: 581 LVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVT 640
L Q T + ++ R P VMI+ DA GI+ GD+VR+ ++RG ++A A VT
Sbjct: 691 LHSQL-AHTSLRQKYAVNDREP---VMIHPEDAAARGIKDGDIVRIHSKRGQVLAGAAVT 746
Query: 641 ENIREGVVAM-------PWHWG-----------FNYLTKDDAIDEFSKMPELKTAACRIS 682
ENI +G VA+ P + G N LT+D+ + ++ T +I
Sbjct: 747 ENIIKGTVALHEGAWYDPMYLGESEKPLCKNGCANVLTRDEGTSKLAQGNSPNTCIVQIE 806
Query: 683 KVEG 686
K G
Sbjct: 807 KFIG 810
>dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halodurans]
Length = 614
Score = 163 bits (408), Expect = 7e-39
Identities = 170/642 (26%), Positives = 275/642 (42%), Gaps = 90/642 (14%)
Query: 65 PLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL---AFLGSERCSLEDNYLL 121
PL R GEKG G F+ ISWE A+ II +F+ I+ S P A+ ++ G+ +++ +
Sbjct: 4 PLIRTGEKGSGAFKPISWERALSIIVDRFEAIIASANPTAILPYSYSGTIGI-IQNGSMD 62
Query: 122 QKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
++ LG +E +C ++ A G P ++ + ++++WG N TN
Sbjct: 63 RRFFHRLGAATLERT--ICAAAGTEAFRYTMGASVGLQP-EETRFANLVIVWGSNLVVTN 119
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
+ E GAK+IV+D +TETA+ A +Q PGTDL +AL + HV+I+EEL
Sbjct: 120 VHQWLYILEAR--KRGAKVIVIDVERTETARQADWFIQIKPGTDLELALGIQHVLIEEEL 177
Query: 242 YDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGI 301
+ F+ + F LA V Y+ + E+++G+ I A ++ T + + + G
Sbjct: 178 INGSFIERQTVGFRELAAHVATYSLDRVERMTGINKEDIQRLARMYGTEKRSFIRIGNGQ 237
Query: 302 NQHANGSITAMAISNLIAITGNIGKEG---VFSGVIPGAHCGLCAAVPGVNCAQLPGPVP 358
H +G ++ AI +L A+TG +G ++ + G + P +
Sbjct: 238 QHHHSGGMSTRAILSLPALTGAWEAKGGGAIYFNLKHGEYSSDILHRPDLR--------- 288
Query: 359 LNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEA 418
NEE +EL K L Q I +++ NPA + K+ +
Sbjct: 289 TNEERRVNMNEL------GKVLLSQQE--------PILALFVYNSNPASVAPDQRKVLQG 334
Query: 419 LKR--AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSF---------QA 467
L R FVVV + T+T K+ADIVLPA T ++ V RS+ +
Sbjct: 335 LARDNLFVVVHEQQLTDTAKFADIVLPA--------TTFLEHDDVYRSYWHPYWQLGRRV 386
Query: 468 VKPPGEAKPDWEIIVMLAKSIGLGE--------------YFNYSSVDDVLREINNVIPAL 513
+ P G++K + E+ MLA + E F SSVD + E +
Sbjct: 387 ISPIGQSKSNTELFRMLANAFHFQELCFRDNDETLMKQAIFGDSSVDSGVWEQFLSGKPI 446
Query: 514 KGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYP 573
+ A+ +E P ETP ++ + +A L P+ K P + Y
Sbjct: 447 RWKPTHLSAQQIE----PWKIGEYETPSGKIELYSEAMHEAGLPPLPEKIPYKQAAAPYQ 502
Query: 574 FWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSL 633
++ G S + K + P V +++ DA R GI GD V + G L
Sbjct: 503 L------IISPSRKGLNSQFIEYAKGK---PVVQLSKEDAMREGIYDGDRVCLFNDHGQL 553
Query: 634 VARAEVTENIREGVV---AMPWH------WGFNYLTKDDAID 666
A V+E ++GV+ + WH FN LT D D
Sbjct: 554 TCTANVSEACQQGVIIARGVWWHHQHEQQGNFNTLTGGDLSD 595
>sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE) >gi|1073844|pir||G64109 dimethylsulfoxide
reductase (EC 1.8.-.-) chain A precursor, anaerobic -
Haemophilus influenzae (strain Rd KW20)
>gi|1574081|gb|AAC22706.1| (U32785) anaerobic dimethyl
sulfoxide reductase, chain A (dmsA) [Haemophilus
influenzae Rd]
Length = 806
Score = 161 bits (404), Expect = 2e-38
Identities = 182/705 (25%), Positives = 300/705 (41%), Gaps = 105/705 (14%)
Query: 44 KLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE 103
+ C +G S + +PDRLK P+KR+G++GEGKF+ ISW+EA+ IA K ++ +G E
Sbjct: 93 RACLRGRSMRRRVYNPDRLKYPMKRIGKRGEGKFKRISWDEALTEIADALKRNIKKYGNE 152
Query: 104 AL------AFLGSERCSL--EDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGP 155
++ LG + ++ + +G + G + V +GG
Sbjct: 153 SIYLNYGTGTLGGTMAKSWPPASTMIARFMNCIG-GYLNHYGDYSTAQIAVGLDYTYGGG 211
Query: 156 -AQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYF--EKAILDNGAKLIVVDPVKTETAK 212
A N DI +K+I+++G NPA T G + E+A + AK+I++DP +T
Sbjct: 212 WALGNGMADIENTKLIVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGA 271
Query: 213 YAHIHLQPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE--------- 262
P PGTD A+ A+ +V+I+E L D+ F+ + +D +
Sbjct: 272 GREDEWIPIRPGTDAALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPTDAPKNGHYKA 331
Query: 263 ----------KYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAM 312
TPEWA KI+G+PA I + A + A + G + +NG + +
Sbjct: 332 YILGYGNDGIAKTPEWAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISR 391
Query: 313 AISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWG 372
AI+ L +TGN+G G +G A+ ++P V L PV + + F LW
Sbjct: 392 AIAMLPILTGNVGIHGGNTGARESAY-----SIPFVRMPTLKNPV---KASIPMF--LWT 441
Query: 373 FEVPSKPGLHYQAIFDAM-----LEGKIKGIYIMGQN-----PARSLANSSKIEEALKRA 422
+ G A+ D + L IK I+ N A+ +++ +
Sbjct: 442 DAIIR--GTEMTALTDGIRGVDKLSSPIKVIWNYASNCLINQHAQINRTHDILQDDTQCE 499
Query: 423 FVVVADIFPTETTKYADIVLPAAAWYEK----TGTVITQNRRVMRSFQAVKPPGEAKPDW 478
++ D T T KY+DI+LP E+ ++ V+ + Q +KP E +P +
Sbjct: 500 MIITIDNHMTSTAKYSDILLPDCTTSEQMDFALDAFVSNMAYVIFADQVIKPSFECRPIY 559
Query: 479 EIIVMLAKSIGLGEYFNYS-SVDDVLREINN-------VIPALKGATPERLAKNLE---- 526
+++ LA+ +G+ E F + ++ LR I +P + + + K ++
Sbjct: 560 DMLSDLAEKMGVKEKFTEGRTQEEWLRHIYEQSREKLPELPTFEEFRQQGIFKKVDPNGF 619
Query: 527 GCMYPCPDENTETPRLFLKGFPTKSGKAEL-------IPVEWKPP--------------- 564
Y +N E L T SGK E+ I WK
Sbjct: 620 KVAYKDFRDNPEAHPL-----KTPSGKIEIYSSRLAEIAKTWKLAEDDVIHPLPIHAQSF 674
Query: 565 ---GEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
G+ E+YP L+ F + H+ T N LK P V +N DA+ I++G
Sbjct: 675 EHYGDPLMEKYPLQLSGFHYKARTHS-TYGN-VDVLKAANP-QEVWMNPIDAEPRNIKNG 731
Query: 622 DLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTKDDAID 666
D++R+ RG + ++T I GVVA+ G Y D ID
Sbjct: 732 DMIRIFNDRGEVHINVKITPRIIPGVVAL--SEGAWYAPDKDRID 774
>sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J INTERGENIC REGION
>gi|2127016|pir||S66017 formate dehydrogenase homolog
yyaE - Bacillus subtilis >gi|467377|dbj|BAA05223.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636640|emb|CAB16130.1| (Z99124) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 667
Score = 160 bits (400), Expect = 6e-38
Identities = 192/685 (28%), Positives = 302/685 (44%), Gaps = 71/685 (10%)
Query: 10 CPW-CSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
CP C C + DG K++ D N +GK+C +G PDRL+ P+K
Sbjct: 9 CPLNCWDSCGFLVTVDDGKVTKVDGDPNHPI-TEGKICGRGRMLETKTNSPDRLRYPMK- 66
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARAL 128
K G+F ISWE+A++ IA K +EI E+ E A L S +N LL+ L +
Sbjct: 67 ---KQNGEFVRISWEQALDEIADKLREIKETS--ETTAVLHSH--DYANNGLLKALDQRF 119
Query: 129 --GTNNV-EFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
G V E G +C S A+S FG P D I SK +++WG N + TN L+
Sbjct: 120 FNGYGGVTEIVGSICWGSGIEAQSWDFGRSYGHGPLD-IYNSKHVVVWGRNVSRTNMHLY 178
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ + + GA + V+DP+ TAK A ++ PG D +A A+L V+I+ D+
Sbjct: 179 --HHLQQVKKKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDET 236
Query: 246 FVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHA 305
F++E FD + ++ + E + + A L+A G +T + G+ ++
Sbjct: 237 FISEHSVGFDDVKELLKTVSLEEFIVKTETSMEELEYLAGLYADGPVST-FMGLGMQRYK 295
Query: 306 NGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAK 365
NG T I L+A +GN+G +G GA+ G G + A+ +P + T++
Sbjct: 296 NGGGTIRWIDALVAASGNVGIKG------GGANFGNVQI--GESFAKTKLTLPELKTTSR 347
Query: 366 KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFVV 425
FS + + + A + I+ I + NP + N++K+ +A ++ +
Sbjct: 348 SFSMM----------TQAEEVLTA-ADPAIEMIIVTCGNPLTQVPNTNKVRQAFEKVPMT 396
Query: 426 VA-DIFPTETTKYADIVLPAAAWYEKTGTVITQ--NRRVMRSFQAVKPPGEAKPDWEIIV 482
VA D T+T + D VLP A +E+ + + V + V+P GEAK D I
Sbjct: 397 VAIDSIMTDTAELCDYVLPTATVFEEEDIYYSSMYHHYVQYGKKLVEPQGEAKSDSWIWS 456
Query: 483 MLAKSIGLGEYFNYSSVDDVLREINNVIPALKGATPERLAKN----LEGCMYPCPDENTE 538
LAK +G GE F YS+ + + ++++ + T ERL + L P D
Sbjct: 457 ELAKRLGFGELFEYSTQEFLEMGLSSL--EAEDVTLERLKEKGHLPLPVKQVPWDDYQFL 514
Query: 539 TPR---------LFLKGFPTKSGKAEL-IPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG 588
TP KGF SG +L +P E E +YP+ L + H
Sbjct: 515 TPSGKFEFTSSLAEQKGF---SGSLQLNVPEESVFHNEELAGKYPYTLLSIHPQRSNH-- 569
Query: 589 TMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEV-------TE 641
S ++K V I+ A ++ GD V + RGS+ + +V T
Sbjct: 570 --SQHVPFIEK-LQHVQVDISPDIAAGQDLQDGDEVVIFNDRGSMKGKVKVMKQAHAKTI 626
Query: 642 NIREGVVAMPWHWGFNYLTKDDAID 666
NI EG+ A + N LT D D
Sbjct: 627 NIDEGMWA-AFGGSVNALTNDTNSD 650
>gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A [Haemophilus
influenzae]
Length = 806
Score = 159 bits (397), Expect = 1e-37
Identities = 180/705 (25%), Positives = 298/705 (41%), Gaps = 105/705 (14%)
Query: 44 KLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE 103
+ C +G S + +PDRLK P+KR+G++GEGKF+ ISW+EA+ IA K ++ +G E
Sbjct: 93 RACLRGRSMRRRVYNPDRLKYPMKRIGKRGEGKFKRISWDEALTEIAYALKRNIKKYGNE 152
Query: 104 AL------AFLGSERCSL--EDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGP 155
++ LG + ++ + +G + G + V +GG
Sbjct: 153 SIYLNYGTGTLGGTMAKSWPPASTMIARFMNCIG-GYLNHYGDYSTAQIAVGLDYTYGGG 211
Query: 156 -AQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYF--EKAILDNGAKLIVVDPVKTETAK 212
A N DI +K+I+++G NPA T G + E+A + AK+I++DP +T
Sbjct: 212 WALGNGMADIENTKLIVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGA 271
Query: 213 YAHIHLQPY-PGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE--------- 262
P PGTD A+ A+ +V+I+E L D+ F+ + +D +
Sbjct: 272 GREDEWIPIRPGTDAALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKA 331
Query: 263 ----------KYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAM 312
TPEWA KI+G+PA I + A + A + G + +NG + +
Sbjct: 332 YILGYGNDGIAKTPEWAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISR 391
Query: 313 AISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWG 372
AI+ L +TGN+G G +G A+ ++P V L P+ + G
Sbjct: 392 AIAMLPILTGNVGIHGGNTGARESAY-----SIPFVRMPTLKNPMKAS------IPMFLG 440
Query: 373 FEVPSKPGLHYQAIFDAM-----LEGKIKGIYIMGQN-----PARSLANSSKIEEALKRA 422
+ + G A+ D + L IK I+ N A+ +++ +
Sbjct: 441 TDAIIR-GTEMTALTDGIRGVDKLSPPIKVIWNYASNCLINQHAQINRTHDILQDDTQCE 499
Query: 423 FVVVADIFPTETTKYADIVLPAAAWYEK----TGTVITQNRRVMRSFQAVKPPGEAKPDW 478
++ D T T KY+DI+LP E+ ++ V+ + Q +KP E +P +
Sbjct: 500 MIITIDNHMTSTAKYSDILLPDCPTSEQMDFALDAFVSNMAYVIFADQVIKPSFECRPIY 559
Query: 479 EIIVMLAKSIGLGEYFNYS-SVDDVLREINN-------VIPALKGATPERLAKNLE---- 526
+++ LA+ +G+ E F + ++ LR I +P + + + K ++
Sbjct: 560 DMLSDLAEKMGVKEKFTEGRTQEEWLRHIYEQSREKLPELPTFEEFRQQGIFKKVDPNGF 619
Query: 527 GCMYPCPDENTETPRLFLKGFPTKSGKAEL-------IPVEWKPP--------------- 564
Y +N E L T SGK E+ I WK
Sbjct: 620 KVAYKDFRDNPEAHPL-----KTPSGKIEIYSSRLAEIAKTWKLAEDDVIHPLPIHAQSF 674
Query: 565 ---GEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSG 621
G+ E+YP L+ F + H+ T N LK P V +N DAK I++G
Sbjct: 675 EHYGDPLMEKYPLQLSGFHYKARTHS-TYGN-VDVLKAANP-QEVWMNPIDAKPRNIKNG 731
Query: 622 DLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTKDDAID 666
D++R+ RG + ++T I GVVA+ G Y D ID
Sbjct: 732 DMIRIFNDRGEVHINVKITPRIIPGVVAL--SEGAWYAPDKDRID 774
>emb|CAA06231.1| (AJ004933) periplasmic nitrate reductase, large subunit
[Rhodopseudomonas sp.]
Length = 559
Score = 158 bits (396), Expect = 2e-37
Identities = 133/480 (27%), Positives = 206/480 (42%), Gaps = 49/480 (10%)
Query: 41 NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGE---KGEGKFEEISWEEAIEIIAKKFKEIL 97
N+G C KG + DRL +P+ R + G+FE +SW+EA +I+A+KFK L
Sbjct: 81 NRGLNCVKGYFLSKIMYGHDRLTQPMLRKTDGRYDKNGEFEPVSWDEAFDIMAEKFKAAL 140
Query: 98 ESHGPEALAFLGSERCSLEDNYLLQKLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPA 156
+ GP + GS + ++ + Y KL +A +NN++ R C +S + FG
Sbjct: 141 KKRGPSGVGMFGSGQWTVWEGYAASKLFKAGFRSNNIDPNARHCMASAVAGFMRTFGIDE 200
Query: 157 QTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHI 216
+DDI + V ++WG N A +P+L+ + ++ + K+ V+ ++ I
Sbjct: 201 PMGCYDDIEAADVFVLWGSNMAEMHPLLWTRVTDRRLSAPHVKVAVLSTLEHRXXXXXAI 260
Query: 217 HLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVN------------------------ 252
L P +D AI A+ + IIK +K FVA+
Sbjct: 261 RLVFKPQSDXAILTAIANHIIKTXRVNKXFVAKHTTFKXXXTDIGYGXXPEHPLQXXXXX 320
Query: 253 ----------NFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFA-TGGNATVVLNEGI 301
A V YT E A +ISGVPA+ I A L+A T G
Sbjct: 321 XXXXXXXXXXXXXXXAAFVADYTIEKASQISGVPAAKIEALAELYADPNTKVTSFWTMGF 380
Query: 302 NQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAH--CGLCAAVPGVNCAQLPGPVPL 359
NQ G NL +TG I + G + GA CG V G +LP + +
Sbjct: 381 NQDTRGVWANNLAYNLHLLTGKISEPGNSPFSLTGAXFACGTAREV-GTFSHRLPADMVV 439
Query: 360 ----NEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKI 415
+ + A+K +L +P KPG H + +G + ++ N ++ AN+++
Sbjct: 440 TNKKHRDIAEKIWKLPEGTIPDKPGYHAVLQSRMLKDGLLNAYWVQVNNNLQAGANANEE 499
Query: 416 EEALKR---AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPG 472
R F+VV+D +P+ T AD++LP A W EK G RR Q V PG
Sbjct: 500 TYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGAYGNAERRTQFWHQLVAAPG 559
>emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidimarina]
Length = 397
Score = 154 bits (386), Expect = 3e-36
Identities = 115/398 (28%), Positives = 181/398 (44%), Gaps = 20/398 (5%)
Query: 10 CPWCSVGCRLYIVS-------VDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRL 62
C +C VGC + + S VD + D N N G LC KG P+ L
Sbjct: 8 CAYCGVGCGVSVSSNKPNWTDVDAADLILVGD-NKHPANYGHLCAKGERLLDSLAQPNVL 66
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
+ P R G + W++A +IA F + + HGP+++A S + ED Y+
Sbjct: 67 RYPKLRSGMP-------LDWDKASTLIADTFAKTIAEHGPDSVALYLSGQLLTEDYYVAN 119
Query: 123 KLARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
K A+ L T NV+ RLC SS A + FG +DD+ ++ VI++ G N A T+
Sbjct: 120 KFAKGFLKTANVDTNSRLCMSSAVSAMQRAFGEDVVPGCYDDLEQADVIVLVGANTAWTH 179
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
PVLF Q AI N A+L+V+DP+ T TAK A +HL PG DL + +L + +
Sbjct: 180 PVLF-QRILAAIKANNAQLVVIDPLSTATAKQADLHLAIKPGADLTLFHGLLGYLADQNR 238
Query: 242 YDKDFVAERVNNFDALARAVEKYTPEWAEKIS--GVPASLIHEAAVLFATGGNATVVLNE 299
D ++A FD + ++ + A+ + GV + + + L A +
Sbjct: 239 VDHAYIAAHTEGFDTVVLQAQQLSANLADLATQVGVSVTQLTQFYQLVANNKKVLTASCQ 298
Query: 300 GINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPL 359
G+NQ G+ A+ N G+IG+ G + G + G QL +
Sbjct: 299 GVNQSTIGTDATNAMINCHLALGHIGQAGCGFFSLTGQPNAMGGREVGGLATQLACHMGF 358
Query: 360 NEETAKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIK 396
++ + ++ W + + + GL +FDA+ EGKIK
Sbjct: 359 SQPEQQLLADFWKVDSIADQKGLVAVEMFDALAEGKIK 396
>pir||G81444 molybdopterin-containing oxidoreductase Cj0264c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967741|emb|CAB72732.1| (AL139074)
molybdopterin-containing oxidoreductase [Campylobacter
jejuni]
Length = 838
Score = 154 bits (386), Expect = 3e-36
Identities = 194/696 (27%), Positives = 300/696 (42%), Gaps = 117/696 (16%)
Query: 56 YVHPDRLKKPLKRVGE-KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCS 114
YV L+ P E +G+ +F +S++EAI++IAK+ K+ +S G A+ F GS
Sbjct: 95 YVRKSYLENPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAI-FGGSYGWK 153
Query: 115 LEDN-----YLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTNPFDDIV 165
N LL + G V G ++ V + G QT+ + +
Sbjct: 154 SSGNMQNSRILLHRFLNVTG-GFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILS 212
Query: 166 KSKVILIWGYNPAATNPVLFGQ-------YFEKAILDNGAKLIVVDPVKTETAKYAHIH- 217
SK ++IWG +P +T + + YFEK + D+ K+I +DPVKT TAK+ +
Sbjct: 213 DSKYVVIWGADPLSTLRIAWTSNEQRGLAYFEK-LKDSKIKVICIDPVKTTTAKFLNAKW 271
Query: 218 LQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------KYTPEWAEK 271
+ P P TD+A+ + M +I ++ + +F+ FD +E K +WA K
Sbjct: 272 IAPRPNTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASK 331
Query: 272 ISGVPASLIHEAAVLFATGGNATVVLNE-GINQHANGSITAMAISNLIAITGNIG-KEGV 329
I G+ I A F N+T++++ G+ + +G + L A+ G IG K G
Sbjct: 332 ICGIDEKTIKNLAETFY--DNSTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGG 389
Query: 330 FSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQ----- 384
F ++ G+ GV G + + + KF L E S+ Q
Sbjct: 390 FGLSYHYSNGGVPTCKGGVIGGMTAGSLGIWKN--GKFKGLSKAEASSEGAEWLQNAASY 447
Query: 385 -----AIFDAMLE-GK-------------IKGIYIMGQNPARSLAN-SSKIEEALKRAFV 424
I DA+L GK I IY +G NP N ++ ++ K V
Sbjct: 448 SFPVARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQNTNTNVKAWRKPRTV 507
Query: 425 VVADIFPTETTKYADIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEII 481
VV +I+ T T K ADIV+P + YE+ +T N + QAV+P GE+K D+ I
Sbjct: 508 VVNEIYWTPTAKMADIVMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVIF 567
Query: 482 VMLAKSIGLGEYFNYS----SVDDVLREINNVIPALKG--------ATP-----ERLAKN 524
+ K G + Y+ D ++E N ALK ATP E AKN
Sbjct: 568 SDICKIYGKDVFNAYTENGKKAKDFIKEYYN--SALKQTQSFGEAFATPMPSFEEFWAKN 625
Query: 525 LEGCMYPCPDENTETPRL-------FLKGFPTKSGKAELI-------------------- 557
E + E+ E R L T SG E+
Sbjct: 626 -EPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTWFE 684
Query: 558 PVEWKPPGEVPDEEYPFWLTNFRLVGQFHT---GTMSNRTKSLKKRWPGPYVMINERDAK 614
P+EW +E PF L + H+ T T ++K R P ++IN +DAK
Sbjct: 685 PIEWLGNA---SKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREP---ILINSKDAK 738
Query: 615 RLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAM 650
+LGI++GD+VRV +RG ++A A V++ I +GVV +
Sbjct: 739 KLGIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRL 774
>sp|P56914|NUG2_RHIME NADH DEHYDROGENASE I CHAIN G 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN G 2) >gi|5650750|emb|CAB51635.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 853
Score = 153 bits (383), Expect = 6e-36
Identities = 165/651 (25%), Positives = 274/651 (41%), Gaps = 67/651 (10%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
+CP C GC+L + + G ++ D+ N+ LC +G DR+K+P+ R
Sbjct: 223 ICPHCGTGCQLTVGARKGEFMRVRSDWEHGV-NRETLCVRGRFGLDFIESRDRIKRPMIR 281
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA- 127
+G +SWEEA + + ++ + E +A L S R E Y QKL R
Sbjct: 282 ----RDGALTPVSWEEAGDFLRQRLG-VAEG---KAAGGLISPRLPNEVLYQFQKLMRTV 333
Query: 128 LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQ 187
L TNNV+ + R + + I +P + ++ +LI G N NPV +
Sbjct: 334 LRTNNVDCSSRWSAPLDILV--PIVASFYSRDPLEQVIGKDCVLIIGGNVTEENPVT--E 389
Query: 188 YFEK-AILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTD---LAIALAMLHVIIKEELYD 243
Y + A +L+++ + A L+ +PG + LA +A L + E L D
Sbjct: 390 YLLRDAARRRHTRLLMLSARPSRLDADARAVLRAHPGGEGQSLAAVVAALVAVTDEGLPD 449
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
D LA+ A S + E G + T++++ + +
Sbjct: 450 -----------DILAKTSGTIASSGANDALDRLVSTLKE-------GRSVTLLVSVDLLR 491
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEE- 362
T + NL+ + +GKE + A+ + A GV LPG P+ +E
Sbjct: 492 SPLARKTLEQLGNLLQLLRLLGKEPSLQFLFDRAN-QMGAWDMGVLPGVLPGLGPIADEA 550
Query: 363 TAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRA 422
T KF WG E+P +PG A+ + +G + +Y++G +P S + +E AL A
Sbjct: 551 TRTKFERSWGAEIPREPGADVDAMLELCEKGGMGVLYVVGSDPLISYPDREFVERALGAA 610
Query: 423 -FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEII 481
++V D F T+T AD+VLPAA + E++GT R + +P +A+ + I
Sbjct: 611 NLLIVQDAFLTDTAGLADVVLPAAGYGEESGTFTNNEGRTQALRKFREPAFDARSNLAIF 670
Query: 482 VMLAKSIGLGEYFNYSSVDDVL-REINNVIPALKGATPERLAKNLEGCMYPCPDENTETP 540
+A L E S + V+ E+ ++PA +G T E L +G T P
Sbjct: 671 GFIA---ALREQPLQPSTETVIFEEMTRLVPAYEGLTWEGL--GADGAF------TTSAP 719
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKR 600
+ + GF + V G FH G +S R+++L
Sbjct: 720 KPWTSGFFAPLSAPGVTDVLQLITGNC----------------LFHNGYVSERSETLNSV 763
Query: 601 WPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
P++ ++ +DA L + GD V V + RG L A+ +V G+V +P
Sbjct: 764 ADDPFIEMSAQDAAGLSLSDGDQVLVRSARGELTAKLKVNRRFPHGLVFVP 814
>pir||B49847 nitrate reductase (EC 1.7.99.4) nasA - Klebsiella pneumoniae
Length = 861
Score = 148 bits (371), Expect = 1e-34
Identities = 124/470 (26%), Positives = 203/470 (42%), Gaps = 21/470 (4%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
CP+C VGC + + D N G+LC KG + + DR+ P
Sbjct: 8 CPYCGVGCGVIASRAPHGQVSVRGD-EQHPANFGRLCVKGAALGETVGLEDRMLFP---- 62
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA-L 128
E E +W +A + + G +A+ F + + ED Y KL + +
Sbjct: 63 ----EVDGERATWPQAGGGRFAPAGDYRSARG-QAVRFTSGQLLT-EDYYAANKLMKGFI 116
Query: 129 GTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQY 188
G N++ RLC SS + G ++D+ S ++++ G N A +PVL+ Q
Sbjct: 117 GAANIDTNSRLCMSSAVTGYKRARWGTVVPCSYEDVENSDLVVLVGSNAAWAHPVLY-QR 175
Query: 189 FEKAILDNGA-KLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFV 247
+A DN +++V+DP +T T A HL PG+D + + +L+ I DF
Sbjct: 176 LAQAKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASRRISDDF- 234
Query: 248 AERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANG 307
N+ + + + + G+P I + F A + GINQ A+G
Sbjct: 235 ----NDAQRALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASG 290
Query: 308 SITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKF 367
S AI N+ G G+ G + G + G L + + ++
Sbjct: 291 SDKCNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLRRP 350
Query: 368 SELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSS-KIEEALKRAFVV 425
+ WG E + GL +F A+ G++K ++IMG N SL +S + E + V+
Sbjct: 351 ARFWGSERLAQTGGLTGLELFAAIGRGEVKAVWIMGTNAMVSLPGTSHAVTEPWPVSLVI 410
Query: 426 VADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK 475
++D+ T+T ++A I PA AW EK+GTV RR+ + PPGEA+
Sbjct: 411 ISDVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISLQRAFMPPPGEAR 460
>gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Halobacterium sp.
NRC-1]
Length = 837
Score = 148 bits (369), Expect = 2e-34
Identities = 195/770 (25%), Positives = 310/770 (39%), Gaps = 167/770 (21%)
Query: 3 EKLIPVVC-PWCSVGCRLYIVSVDGYPRKIEFDYNP-KTPNKGKLCPKGVSSYQHYVHPD 60
++++ C P C C L + DG +K+E KT +G C G++ Q + D
Sbjct: 53 DQVVKTACSPNCRGKCPLDVFVRDGQIKKVEQQVPAAKTFKRG--CTLGMTHLQRVYNAD 110
Query: 61 RLKKPLKRVG---------EKG-EGKFEEISWEEAIEIIAKKFKEILESHGPEALAF-LG 109
RLK P+KR ++G + +FE I+W++A++++A + +GP +L + G
Sbjct: 111 RLKYPMKRTSWSPDDPQPDQRGADAQFERIAWDDALDLVADGIQRAKREYGPRSLLWHSG 170
Query: 110 SERCSLEDNYLLQKLARALGTN-NVEFAGRLCQSSNFVA-RSKIFGGPAQTNPFDDIVKS 167
S + L++L L + + Q N V +F P TN DD V +
Sbjct: 171 SGDGGITGYRRLKELVGGLQDDFTYGIDTNVGQGFNRVTGEGGVFMPP--TNTADDWVNA 228
Query: 168 KVILIWGYNPAATNPVLFGQYFEKAILD---NGAKLIVVDPVKTETAKYAHIHLQPYPGT 224
+ I+IWG + A+ + ++ ILD NGAKL+VVDPV T TA+ A + L PG
Sbjct: 229 ETIIIWGSDIFASQFQMDAEW----ILDAKRNGAKLVVVDPVYTNTAEKADLWLPIKPGK 284
Query: 225 DLAIALAMLHVIIKEELYDKDFVAERVNNFDALARA------------------------ 260
D +ALAM+ I + + YD+ F+ R N AL RA
Sbjct: 285 DTHLALAMMQYIFEHDHYDEAFLRSR-TNAPALVRADDGTLLDPASVTATPPEDGIVVFN 343
Query: 261 VEKYTP---------------EWA--------------EKISGVPASLIHEAAVL----- 286
E +P EW E+ S P + + A L
Sbjct: 344 TETGSPEVVPAETNGPFALFGEWTIDGTTVHTGLTALREQASSYPPQAVADTAGLAAADI 403
Query: 287 ------FATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCG 340
AT G ++ + G+ ++ G + + L+A+TG+ G+ G
Sbjct: 404 ETAADWLATRGPGGIMPSYGVGRYLYGHVFGQTYATLLALTGDYGRHG-----------N 452
Query: 341 LCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG---KIKG 397
+ A P + + L N+ + +G Y + D + G + K
Sbjct: 453 IHAQHPSYDGSYLE-TGDWNDPDGAAGVDTYG----------YNRVLDLLANGDPVQTKF 501
Query: 398 IYIMGQNP-ARSLANSSKIEEALKRAFVVV-ADIFPTETTKYADIVLPAAAWYEKTGTVI 455
+Y M N + +A+ VV ADI+ T TT+ ADI+LPAA W+E +
Sbjct: 502 MYGMNSNMLGNQFPERDRWLDAMSNLDTVVWADIYHTPTTRQADIILPAAHWFETEDLLT 561
Query: 456 TQNR-RVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALK 514
T + +A P EA+ D+ I+ LA+ +G G+ F P K
Sbjct: 562 TYTHPNLSYRTKAHDPLWEARDDYYIMAGLAQRLGHGDKF----------------PDDK 605
Query: 515 GATPERLAKNLEGCMYPCPDE-----NTETPRL-FLKGFPTKSGKAEL----IPVEWKP- 563
+R KN + + E ETP + + F T+SG+ + PVE P
Sbjct: 606 HDVLDRFVKNDDRLSWDALRETGTVATDETPTVAYTDEFGTESGRITVYDDDAPVEEGPA 665
Query: 564 ------PGEVPD-------------EEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGP 604
EVP +EYP + H+ + L++ P
Sbjct: 666 LPDDGVSLEVPKPLEARTADDWAHADEYPLLFMQKHSKWRIHSQWAN--VPWLREINTEP 723
Query: 605 YVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHW 654
+ I+ +DA R GI G+ VRV RGS+V RA+ + I+ G+V W
Sbjct: 724 QLDIHPKDATRRGIDDGEYVRVHNDRGSVVVRAKYNDGIQPGLVNTDQGW 773
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
>gi|10120736|pdb|1E5V|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes Buffer >gi|2981779|pdb|1DMR| Oxidized
Dmso Reductase From Rhodobacter Capsulatus
>gi|2981904|pdb|3DMR| Structure Of Dmso Reductase From
Rhodobacter Capsulatus At Ph 7.0 >gi|2981898|pdb|2DMR|
Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 147 bits (368), Expect = 3e-34
Identities = 171/667 (25%), Positives = 275/667 (40%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GPE + F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPEGV-F 152
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 153 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 213 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 272
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------KYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD ++ T
Sbjct: 273 FGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWAE ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 333 EWAEGISGVPAETIKELARLFES-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 391
Query: 327 EG-------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G +SG + G A A GP L A ++ P
Sbjct: 392 PGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K VV D T T ++A
Sbjct: 452 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G F
Sbjct: 512 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFT 571
Query: 496 ---------YSSVDDVLRE---INNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 572 EGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 632 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 689
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 690 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 746
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 747 AVMKGVI 753
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer >gi|10120738|pdb|1E60|C Chain C, Oxidized Dmso
Reductase Exposed To Hepes - Structure Ii Buffer
>gi|10120739|pdb|1E61|A Chain A, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
>gi|10120740|pdb|1E61|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
Length = 823
Score = 147 bits (368), Expect = 3e-34
Identities = 171/667 (25%), Positives = 275/667 (40%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GPE + F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPEGV-F 152
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 153 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 213 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 272
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------KYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD ++ T
Sbjct: 273 FGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWAE ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 333 EWAEGISGVPAETIKELARLFES-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 391
Query: 327 EG-------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G +SG + G A A GP L A ++ P
Sbjct: 392 PGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K VV D T T ++A
Sbjct: 452 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G F
Sbjct: 512 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFT 571
Query: 496 ---------YSSVDDVLRE---INNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 572 EGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 632 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 689
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 690 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 746
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 747 AVMKGVI 753
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 147 bits (367), Expect = 4e-34
Identities = 170/667 (25%), Positives = 276/667 (40%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GP+ + F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV-F 152
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 153 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 213 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 272
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------KYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD ++ T
Sbjct: 273 FGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWAE ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 333 EWAEGISGVPAETIKELARLFES-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 391
Query: 327 EG-------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G +SG + G A A GP L A ++ P
Sbjct: 392 PGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K VV D T T ++A
Sbjct: 452 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G+ F
Sbjct: 512 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFT 571
Query: 496 ---------YSSVDDVLRE---INNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 572 EGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 632 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 689
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 690 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 746
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 747 AVMKGVI 753
>sp|Q06457|NASA_KLEPN NITRATE REDUCTASE
Length = 861
Score = 147 bits (367), Expect = 4e-34
Identities = 125/474 (26%), Positives = 203/474 (42%), Gaps = 29/474 (6%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
CP+C VGC + + D N G+LC KG + + V
Sbjct: 8 CPYCGVGCGVIASRAPHGQVSVRGD-EQHPANFGRLCVKGAALGE-------------TV 53
Query: 70 GEKGEGKFEEISWEEAI--EIIAKKFKEI--LESHGPEALAFLGSERCSLEDNYLLQKLA 125
G +G F E+ E A + +F S +A+ F + + ED Y KL
Sbjct: 54 GLEGRMLFPEVDGERATWPQAGGGRFAPAGDYRSARGQAVRFTSGQLLT-EDYYAANKLM 112
Query: 126 RA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVL 184
+ +G N++ RLC SS + G ++D+ S ++++ G N A +PVL
Sbjct: 113 KGFIGAANIDTNSRLCMSSAVTGYKRARWGTVVPCSYEDVENSDLVVLVGSNAAWAHPVL 172
Query: 185 FGQYFEKAILDNGA-KLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYD 243
+ Q +A DN +++V+DP +T T A HL PG+D + + +L+ I
Sbjct: 173 Y-QRLAQAKRDNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASRRIS 231
Query: 244 KDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQ 303
DF N+ + + + + G+P I + F A + GINQ
Sbjct: 232 DDF-----NDAQRALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQ 286
Query: 304 HANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEET 363
A+GS AI N+ G G+ G + G + G L + +
Sbjct: 287 SASGSDKCNAIINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDD 346
Query: 364 AKKFSELWGFE-VPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSS-KIEEALKR 421
++ + WG E + GL +F A+ G++K ++IMG N SL +S + E
Sbjct: 347 LRRPARFWGSERLAQTGGLTGLELFAAIGRGEVKAVWIMGTNAMVSLPGTSHAVTEPWPV 406
Query: 422 AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK 475
+ V+++D+ T+T ++A I PA AW EK+GTV RR+ + PPGEA+
Sbjct: 407 SLVIISDVADTDTGRFAHIRFPALAWGEKSGTVTNSERRISLQRAFMPPPGEAR 460
>gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphaeroides]
Length = 822
Score = 146 bits (365), Expect = 7e-34
Identities = 161/662 (24%), Positives = 266/662 (39%), Gaps = 74/662 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++AK+ K + ES+GP F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVAKELKRVQESYGPTG-TF 152
Query: 108 LGSERCS----LEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V +G + + + G Q
Sbjct: 153 GGSYGWKNPGRLHNCQVLMRRALNLAGGFVNSSGDYSTGAAQIIMPHVMGTLEVYEQQTA 212
Query: 161 FDDIV-KSKVILIWGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V +++++ W +P TN + + G + +A+ + G K+I ++PV+TETA Y
Sbjct: 213 WPVVVDNTELMVFWAADPVKTNQIGWVVPDHGAFAGMQAMKEKGTKVICINPVRTETADY 272
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
L P P TD+A+ L M H + E+L+DKDF+ + FD A + T
Sbjct: 273 FGAELVSPRPQTDVALMLGMAHTLYSEDLHDKDFIENCTSGFDIFAAYLTGESDGTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F GG + I + +G + L ++ G IG
Sbjct: 333 EWAAEICGLPAEQIKELARRF-VGGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGL 391
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGVNCAQLP--GPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G+ A+ G++ P G L+ A ++ P
Sbjct: 392 PGGGFGLSYHYSNGGSPTSDGPALGGISDGGKPVEGAAWLSASGAASIPCARVVDMLLNP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G +Q +K Y +G NP + +++ +A K +V D T T ++A
Sbjct: 452 GGEFQFNGATATYPDVKLAYWVGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYF- 494
DIVLPA YE+ NR ++ + V P EA+ D++I L + +G G+ F
Sbjct: 512 DIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALTERLGKGKEFT 571
Query: 495 -------------------------NYSSVDDVLREINNVIPALKGATPERLAKNLEGCM 529
S +D E P +GA R A E +
Sbjct: 572 EGRDEMGWISSFYEAAVKQAEFKQMEMPSFEDFWSEGIVEFPITEGANFVRYADFREDPL 631
Query: 530 YPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGE---VPDEEYPFWLTNFRLVGQFH 586
+ + ++ K W P E P +YP + + H
Sbjct: 632 FNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGPGAKYPLHVVASHPNSRLH 691
Query: 587 TGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREG 646
+ + L +IN DA GI GD++RV RG ++ A+V++ + G
Sbjct: 692 SQLNGTSLRDLYAVAGHEPCLINPDDAAARGIADGDVLRVFNDRGQILVGAKVSDAVMPG 751
Query: 647 VV 648
+
Sbjct: 752 AI 753
>pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus With Bound Dmso
Substrate
Length = 823
Score = 145 bits (363), Expect = 1e-33
Identities = 170/667 (25%), Positives = 274/667 (40%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GP + F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPSGV-F 152
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 153 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 213 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 272
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------KYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD ++ T
Sbjct: 273 FGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWAE ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 333 EWAEGISGVPAETIKELARLFES-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 391
Query: 327 EG-------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G +SG + G A A GP L A ++ P
Sbjct: 392 PGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K VV D T T ++A
Sbjct: 452 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G F
Sbjct: 512 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGAEFT 571
Query: 496 ---------YSSVDDVLRE---INNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 572 EGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 632 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 689
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 690 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 746
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 747 AVMKGVI 753
>sp|P32176|FDOG_ECOLI FORMATE DEHYDROGENASE-O, MAJOR SUBUNIT (FORMATE DEHYDROGENASE-O
ALPHA SUBUNIT) (FDH-Z ALPHA SUBUNIT) (AEROBIC FORMATE
DEHYDROGENASE MAJOR SUBUNIT) >gi|7427710|pir||S40838
formate dehydrogenase (EC 1.2.1.2) O (aerobic) alpha
chain - Escherichia coli
Length = 1016
Score = 145 bits (362), Expect = 2e-33
Identities = 156/608 (25%), Positives = 234/608 (37%), Gaps = 140/608 (23%)
Query: 10 CPWCSVGCRLYIVSV-DGYPRK----IEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLK 63
C +CSVGC L + S+ DG + +P P N+G LCPKG RLK
Sbjct: 50 CTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLK 109
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESH----GPEALA--------FLGSE 111
P R G K+++ISWEEA + IAK KE +++ E + L +
Sbjct: 110 FPEYRA--PGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCAS 167
Query: 112 RCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVIL 171
S E YL QK +RALG V+ R+C + + FG A TN + DI + +++
Sbjct: 168 ASSNETGYLTQKFSRALGMLAVDNQARVCHGPTVASLAPTFGRGAMTNHWVDIKNANLVV 227
Query: 172 IWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALA 231
+ G N A +PV F ++ +A + NGAKLIV+DP T TA A + GTD+A
Sbjct: 228 VMGGNAAEAHPVGF-RWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIRSGTDIAFLSG 286
Query: 232 MLHVIIKEELYDKDFVAERVN-----------------NFDA------------------ 256
+L ++ E +++++ N +DA
Sbjct: 287 VLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELDENG 346
Query: 257 -----------------LARAVEKYTPEWAEKISGVP----ASLIHEAAVLFATGGNATV 295
L + V +YTP+ E I G P + A A A+
Sbjct: 347 FAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKTASF 406
Query: 296 VLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-GVNCAQLP 354
+ G QH+ G+ ++ + + GN+G G + G H + G+ LP
Sbjct: 407 LYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLGLLSQSLP 465
Query: 355 G--------------------PVPLNEETAK------KF---------------SELWGF 373
G P PL E KF WGF
Sbjct: 466 GYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSWGF 525
Query: 374 EVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIF 430
+ K Y + F+ M EGK+ G G NP S N +K+ L K F+V D
Sbjct: 526 DWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTIDPL 585
Query: 431 PTETTKYAD-----------------IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGE 473
TET+ + LP+ + E+ G+++ R + ++ PG
Sbjct: 586 NTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAPGI 645
Query: 474 AKPDWEII 481
A D EI+
Sbjct: 646 ALTDGEIL 653
>dbj|BAB06249.1| (AP001515) formate dehydrogenase alpha chain [Bacillus halodurans]
Length = 782
Score = 145 bits (362), Expect = 2e-33
Identities = 170/667 (25%), Positives = 282/667 (41%), Gaps = 89/667 (13%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF-LGSERCSLEDNY 119
R+ PL R + GE +F ISW++A+ IA K K I P+ LAF L + + E Y
Sbjct: 123 RIPYPLSR--KPGEKRFTRISWDDALNRIAAKIKAI----DPKQLAFYLTARGITNEVYY 176
Query: 120 LLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAA 179
K+AR LGTNN++ A R+C S + A + G A + + D + + V++ WG A
Sbjct: 177 TAAKVARFLGTNNIDNASRICHSPSKTALKRSLGIGASSCNYQDWIGTDVLVFWGSVAAN 236
Query: 180 TNPVLFGQYFEKAILDNGAKLIVVDPVKT------------ETAKYAHIHLQPYPGTDLA 227
PV + A G K+I+++P + E+A + + ++
Sbjct: 237 NQPV--STKYMYAAKKAGTKIIMINPYREPAMENYWIPSIPESALFGTQIVDDVFQVNIG 294
Query: 228 IALAMLHVIIKE----------ELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPA 277
+A ++ ++K D F+A N F L VE+ K +G+
Sbjct: 295 GDIAFMNGVMKHWFEMEKEQPGSAIDHAFIANHTNGFAELKEHVEQLNWNDIVKSAGLSK 354
Query: 278 SLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIP-G 336
I E A L A + + + G+ QH + ++NL + G IG++ GV+P
Sbjct: 355 ERILEFAKLLANSRSGVFIWSMGLTQHRFATDNISQVANLALLQGFIGRK--HCGVMPIR 412
Query: 337 AHCGL-CAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAML---- 391
H G+ + G + LPG E K+ +WGF +P G + + +L
Sbjct: 413 GHSGVQGSGEMGADPFVLPGG-DFEPEHKKRIEAIWGFHIPDWQGDTVGQMLENVLLPDD 471
Query: 392 -EGKIKGIYIMGQNPARSLANSSKIEEALKRAFVVVAD--IFPTET---TKYADIVLPAA 445
E K++ Y G N ++ + + I+ L+ + V IF T T K IVLPA
Sbjct: 472 HERKVRLFYTSGGNFLETMPDPAFIQRVLENVELRVHQDIIFNTSTLVDAKEEVIVLPAM 531
Query: 446 AWYEKT-GTVITQNRRVMRSFQAVKPP--GEAKPDWEIIVMLAKSIG--LGEYFNYSSVD 500
YE+ G T R++ +K P EA+ +W+I V LAK + ++ +
Sbjct: 532 TRYEQPGGGTSTSTERMVYFSPEIKGPRIEEARAEWDIYVELAKRVDPERAHLIDFQTAQ 591
Query: 501 DVLREINNVIPALKGATPERLAKNL---------EGCMYPCPDENTETPRLFLKGFPTKS 551
+ EI P G + ++ EG + P PD
Sbjct: 592 QIRDEIAVANPNYDGIQHLKNRGDVFQWGGAWLCEGGVCPTPD----------------- 634
Query: 552 GKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLK--KRWPGPYVMIN 609
G+ L+P++ E E F++T+ R G+ + + T R+ V++N
Sbjct: 635 GRGNLLPIDLP---EFRRTEGHFYVTSRR--GKQFNSMVYSETDPFNGADRYD---VIMN 686
Query: 610 ERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMPWHWGFNYLTKDDAIDEFS 669
E D K+L IR+G+ + V + G+ RA + + G +A+ W G N L + +
Sbjct: 687 ETDGKKLNIRNGESIVVYNQYGTFQGRA-CFGDTQTGNIAVYWPEG-NMLLPKGVYETHA 744
Query: 670 KMPELKT 676
K+PE T
Sbjct: 745 KIPEYNT 751
>sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2126478|pir||S70012 methionine-S-oxide reductase (EC
1.8.4.5) precursor - Rhodobacter sphaeroides
>gi|2126485|pir||JC4322 methionine-S-oxide reductase (EC
1.8.4.5) - Rhodobacter sphaeroides
>gi|1139564|dbj|BAA07615.1| (D38634) dimethyl sulfoxide
reductase precursor [Rhodobacter sphaeroides]
>gi|1161236|gb|AAB07230.1| (L46851) dimethyl sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 822
Score = 143 bits (358), Expect = 5e-33
Identities = 163/664 (24%), Positives = 276/664 (41%), Gaps = 78/664 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++A++ K + ES+GP F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTG-TF 152
Query: 108 LGSERCS----LEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V +G ++ + + G Q
Sbjct: 153 GGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTA 212
Query: 161 FDDIVKSKVILI-WGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V++ +++ W +P TN + + G Y KA+ + G ++I ++PV+TETA Y
Sbjct: 213 WPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETADY 272
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ P P TD+A+ L M H + E+L+DKDF+ FD A + T
Sbjct: 273 FGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F G + I + +G + L ++ G IG
Sbjct: 333 EWAAEICGLPAEQIRELARSF-VAGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGL 391
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGVNCA--QLPGPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G+ A+ G++ + G L+E A ++ P
Sbjct: 392 PGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G +Q +K Y G NP + +++ +A K +V D T T ++A
Sbjct: 452 GGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ NR ++ + V P EA+ D++I LA+ +G G F
Sbjct: 512 DIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEFT 571
Query: 496 ------------YSSVDDVLREINNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
Y + N +P+ + E + + EG + + E P
Sbjct: 572 EGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVG----QFHTGTMSNRTKS- 596
G P SG E+ + G +P W+ +G ++ +++ KS
Sbjct: 632 FNPLGTP--SGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSR 689
Query: 597 LKKRWPGPYV------------MINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR 644
L + G + +IN DA GI GD++RV RG ++ A+V++ +
Sbjct: 690 LHSQLNGTSLRDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDAVM 749
Query: 645 EGVV 648
G +
Sbjct: 750 PGAI 753
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 143 bits (358), Expect = 5e-33
Identities = 163/664 (24%), Positives = 276/664 (41%), Gaps = 78/664 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++A++ K + ES+GP F
Sbjct: 52 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTG-TF 110
Query: 108 LGSERCS----LEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V +G ++ + + G Q
Sbjct: 111 GGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTA 170
Query: 161 FDDIVKSKVILI-WGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V++ +++ W +P TN + + G Y KA+ + G ++I ++PV+TETA Y
Sbjct: 171 WPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIXINPVRTETADY 230
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ P P TD+A+ L M H + E+L+DKDF+ FD A + T
Sbjct: 231 FGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTA 290
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F G + I + +G + L ++ G IG
Sbjct: 291 EWAAEICGLPAEQIRELARSF-VAGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGL 349
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGVNCA--QLPGPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G+ A+ G++ + G L+E A ++ P
Sbjct: 350 PGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNP 409
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G +Q +K Y G NP + +++ +A K +V D T T ++A
Sbjct: 410 GGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHA 469
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ NR ++ + V P EA+ D++I LA+ +G G F
Sbjct: 470 DIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEFT 529
Query: 496 ------------YSSVDDVLREINNVIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
Y + N +P+ + E + + EG + + E P
Sbjct: 530 EGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPL 589
Query: 542 LFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVG----QFHTGTMSNRTKS- 596
G P SG E+ + G +P W+ +G ++ +++ KS
Sbjct: 590 FNPLGTP--SGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSR 647
Query: 597 LKKRWPGPYV------------MINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIR 644
L + G + +IN DA GI GD++RV RG ++ A+V++ +
Sbjct: 648 LHSQLNGTSLRDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDAVM 707
Query: 645 EGVV 648
G +
Sbjct: 708 PGAI 711
>emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxide reductase
[Rhodobacter capsulatus]
Length = 794
Score = 143 bits (357), Expect = 6e-33
Identities = 168/667 (25%), Positives = 275/667 (41%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GP+ + F
Sbjct: 65 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV-F 123
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 124 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 183
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 184 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 243
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD + T
Sbjct: 244 FGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGETDSTPKTA 303
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 304 EWASDISGVPAETIKELARLFKS-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 362
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGV--NCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G A+ G+ A GP L A ++ P
Sbjct: 363 PGGGFGLSYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 422
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K +V D T T ++A
Sbjct: 423 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHDFQWTPTARHA 482
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G+ F
Sbjct: 483 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFT 542
Query: 496 ---------YSSVDDVLREINN---VIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 543 EGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 602
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 603 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 660
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 661 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 717
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 718 AVMKGVI 724
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 143 bits (357), Expect = 6e-33
Identities = 168/667 (25%), Positives = 275/667 (41%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GP+ + F
Sbjct: 52 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV-F 110
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGG----PAQTN 159
GS L + L + L V AG + V + G QT
Sbjct: 111 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 170
Query: 160 PFDDIVKSKVILIWGYNPAATNPVLF-----GQY-FEKAILDNGAKLIVVDPVKTETAK- 212
++V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T +
Sbjct: 171 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 230
Query: 213 YAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ H+ P P TD+AI L M H ++ E+LYDKDF+A + FD + T
Sbjct: 231 FGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGETDSTPKTA 290
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 291 EWASDISGVPAETIKELARLFKS-KRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 349
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGV--NCAQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G A+ G+ A GP L A ++ P
Sbjct: 350 PGGGFGLSYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 409
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A K +V D T T ++A
Sbjct: 410 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHDFQWTPTARHA 469
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G+ F
Sbjct: 470 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFT 529
Query: 496 ---------YSSVDDVLREINN---VIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 530 EGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 589
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 590 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 647
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 648 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 704
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 705 AVMKGVI 711
>sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2981245|gb|AAD13674.1| (U49506) dimethyl sulfoxide
reductase dorA [Rhodobacter capsulatus]
Length = 823
Score = 142 bits (355), Expect = 1e-32
Identities = 166/667 (24%), Positives = 278/667 (40%), Gaps = 84/667 (12%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F +SW++A++++A + K + E++GP+ + F
Sbjct: 94 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV-F 152
Query: 108 LGSERCS----LEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + L + L V AG + V + G Q
Sbjct: 153 GGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
Query: 161 FDDIVKS-KVILIWGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ + ++ +V++ W +P T+ + + G Y +A+ G K+IV+DPV+T+T ++
Sbjct: 213 WPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEF 272
Query: 214 AHI-HLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
H+ P P TD+AI L M H ++ E+LYDKDF+A + FD + T
Sbjct: 273 FGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLMGETDSTPKTA 332
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA ISGVPA I E A LF + + + + +G + L ++ G IG
Sbjct: 333 EWASDISGVPAETIKELARLFISK-RTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGL 391
Query: 327 EGVFSGVI-----PGAHCGLCAAVPGVNC--AQLPGPVPLNEETAKKFSELWGFEVPSKP 379
G G+ G A+ G+ A GP L A ++ P
Sbjct: 392 PGGGFGLSYHYSGGGTPSTSGPALSGITDGGAATKGPEWLAASGASVIPVARVVDMLENP 451
Query: 380 GLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFV-VVADIFPTETTKYA 438
G + +K Y +G NP + +++ +A ++ +V D T T ++A
Sbjct: 452 GAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIVHDFQWTPTARHA 511
Query: 439 DIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFN 495
DIVLPA YE+ N ++ + V+P EA+ D++I +A+ +G G+ F
Sbjct: 512 DIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAERLGKGKEFT 571
Query: 496 ---------YSSVDDVLREINN---VIPALKGATPERLAK--NLEGCMYPCPDENTETPR 541
S DD ++ +PA E + + +G + E P
Sbjct: 572 EGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGADFVRYASFREDPL 631
Query: 542 LFLKGFPTKSGKAELIPVE--------------WKPPGE---VPDEEYPFWLTNFRLVGQ 584
L G PT G E+ W P E P +YP + +
Sbjct: 632 LNPLGTPT--GLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAASHPFNR 689
Query: 585 FHT---GTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTE 641
H+ GT+ +++ P +++ DA GI GD+VRV RG ++ +VT+
Sbjct: 690 LHSQLNGTVLREGYAVQGHEP---CLMHPDDAAARGIADGDVVRVHNDRGQILTGVKVTD 746
Query: 642 NIREGVV 648
+ +GV+
Sbjct: 747 AVMKGVI 753
>sp|P24183|FDNG_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, MAJOR SUBUNIT (FORMATE
DEHYDROGENASE-N ALPHA SUBUNIT) (FDH-N ALPHA SUBUNIT)
(ANAEROBIC FORMATE DEHYDROGENASE MAJOR SUBUNIT)
>gi|7427709|pir||JS0628 formate dehydrogenase (EC
1.2.1.2) N (nitrate-inducible) alpha chain - Escherichia
coli
Length = 1015
Score = 141 bits (351), Expect = 3e-32
Identities = 158/614 (25%), Positives = 236/614 (37%), Gaps = 140/614 (22%)
Query: 4 KLIPVVCPWCSVGCRLYIVSV-DGYPRKIEFDYN----PKTP-NKGKLCPKGVSSYQHYV 57
K I C +CSVGC L + S+ DG E Y+ P P ++G LCPKG +
Sbjct: 44 KEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVN 103
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE------------AL 105
+RL+ P R G K++ ISWEEA IAK K +++ E +
Sbjct: 104 SENRLRYPEYRA--PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLST 161
Query: 106 AFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIV 165
L + S E L QK AR+LG V+ R+C + + FG A TN + DI
Sbjct: 162 GMLCASGASNETGMLTQKFARSLGMLAVDNQARVCHGPTVASLAPTFGRGAMTNHWVDIK 221
Query: 166 KSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTD 225
+ V+++ G N A +PV F ++ +A +N A LIVVDP T TA A I+ GTD
Sbjct: 222 NANVVMVMGGNAAEAHPVGF-RWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTD 280
Query: 226 LAIALAMLHVIIKEELYDKDFVAERVN-----------------NFDA------------ 256
+ +L +I+ + ++V N +DA
Sbjct: 281 ITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNY 340
Query: 257 -----------------------LARAVEKYTPEWAEKISGVP-ASLIHEAAVLFATGG- 291
L V +YTP+ E I G P A + VL +T
Sbjct: 341 QLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAP 400
Query: 292 --NATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-GV 348
T + G QH G+ ++ + + GN+G G + G H + G+
Sbjct: 401 DRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLGL 459
Query: 349 NCAQLPGPVPLNEE-----------------------------------------TAKKF 367
LPG + L E A +
Sbjct: 460 LSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQK 519
Query: 368 SELWGFEVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFV 424
WG++ K Y I F+ M EGK+ G + G NP S + +K+ L K ++
Sbjct: 520 ENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYM 579
Query: 425 VVADIFPTETTKY------------ADIV-----LPAAAWYEKTGTVITQNRRVMRSFQA 467
VV D TET+ + A I LP+ + E+ G++ R + ++
Sbjct: 580 VVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKG 639
Query: 468 VKPPGEAKPDWEII 481
PGEA+ D EI+
Sbjct: 640 QDAPGEARNDGEIL 653
>pir||S66263 dimethyl sulfoxide reductase - Rhodobacter sphaeroides (fragment)
Length = 764
Score = 140 bits (349), Expect = 5e-32
Identities = 162/665 (24%), Positives = 266/665 (39%), Gaps = 79/665 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++A++ K + ES+GP F
Sbjct: 42 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTG-TF 100
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V G + + + G Q
Sbjct: 101 GGSYGWRSPGRLHNCQVLMRRALNLAGGFVNSVGDYSTAGAQIIMPYVMGTLEVYEQQTA 160
Query: 161 FDDIVKSKVILI-WGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V++ +++ W +P TN + + G Y KA+ + G ++I ++PV+TETA Y
Sbjct: 161 WPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETADY 220
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ P P TD+A+ L M H + E+L+DKDF+ FD A + T
Sbjct: 221 FGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTA 280
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F G + I + + L ++ G IG
Sbjct: 281 EWAAEICGLPAEQIRELARSF-VAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMIGQIGL 339
Query: 327 EGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPS--------K 378
G G+ G G + EE A SE +P
Sbjct: 340 PGGGFGLSYHYSNGGSPTSDGPALGGISDGAKAVEEGAACLSESGATSIPCARVVDMLLN 399
Query: 379 PGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKY 437
PG +Q +K Y G NP + +++ +A K +V D T T ++
Sbjct: 400 PGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARH 459
Query: 438 ADIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYF 494
ADIVLPA YE+ NR ++ + V P EA+ D++I LA+ +G G F
Sbjct: 460 ADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEF 519
Query: 495 N------------YSSVDDVLREINNVIPALKGATPERLAK--NLEGCMYPCPDENTETP 540
Y + N +P+ + E + + EG + + E P
Sbjct: 520 TEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDP 579
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVG----QFHTGTMSNRTKS 596
G P SG E+ + G +P W+ +G ++ +++ KS
Sbjct: 580 LFNPLGTP--SGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKS 637
Query: 597 -LKKRWPGPYV------------MINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENI 643
L + G + +IN DA GI GD++RV RG ++ +V++ +
Sbjct: 638 RLHSQLTGTSLRDLYAVVGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGTKVSDAV 697
Query: 644 REGVV 648
G +
Sbjct: 698 IPGAI 702
>prf||2117158A DMSO reductase [Rhodobacter sphaeroides]
Length = 777
Score = 139 bits (346), Expect = 1e-31
Identities = 160/665 (24%), Positives = 269/665 (40%), Gaps = 79/665 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++A++ K + ES+GP F
Sbjct: 52 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWKEALDLVARELKRVQESYGPTG-TF 110
Query: 108 LGS----ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V G + + + G Q
Sbjct: 111 GGSYGWRSPGRLHNCQVLMRRALNLAGGFVNSVGDYSTAGAQIIMPYVMGTLEVYEQQTA 170
Query: 161 FDDIVKSKVILI-WGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V++ +++ W +P TN + + G Y KA+ + G ++I ++PV+TETA Y
Sbjct: 171 WPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETADY 230
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ P P TD+A+ L M H + E+L+DKDF+ FD A + T
Sbjct: 231 FGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTA 290
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F G + I + + L ++ G IG
Sbjct: 291 EWAAEICGLPAEQIRELARSF-VAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMIGQIGL 349
Query: 327 EG--------VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSK 378
G +G P + + A++ G L+E A ++
Sbjct: 350 PGGGFGLSYHYSNGGSPTSDGPALGGISDGAKARVEGAACLSESGATSIPCARVVDMLLN 409
Query: 379 PGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKY 437
PG +Q +K Y G NP + +++ +A K +V D T T ++
Sbjct: 410 PGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARH 469
Query: 438 ADIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYF 494
ADIVLPA YE+ NR ++ + V P EA+ D++I LA+ +G G F
Sbjct: 470 ADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEF 529
Query: 495 N------------YSSVDDVLREINNVIPALKGATPERLAK--NLEGCMYPCPDENTETP 540
Y + N +P+ + E + + EG + + E P
Sbjct: 530 TEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDP 589
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVG----QFHTGTMSNRTKS 596
G P SG E+ + G +P W+ +G ++ +++ KS
Sbjct: 590 LFNPLGTP--SGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKS 647
Query: 597 -LKKRWPGPYV------------MINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENI 643
L + G + +IN DA GI GD++RV RG ++ +V++ +
Sbjct: 648 RLHSQLTGTSLRDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGTKVSDAV 707
Query: 644 REGVV 648
G +
Sbjct: 708 IPGAI 712
>gb|AAC13660.1| (U25037) dimethyl sulfoxide reductase [Rhodobacter sphaeroides f.
sp. denitrificans]
Length = 764
Score = 138 bits (345), Expect = 2e-31
Identities = 161/665 (24%), Positives = 265/665 (39%), Gaps = 79/665 (11%)
Query: 59 PDRLKKPLKRV-----------GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF 107
P R+K P+ R +G G F ++W+EA++++A++ K + ES+GP F
Sbjct: 42 PTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTG-TF 100
Query: 108 LGSERCS----LEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPA---QTNP 160
GS L + +L + A L V G + + + G Q
Sbjct: 101 GGSYGWXSPGRLHNCQVLMRRALNLAGGFVNSVGXYSTAGAQIIMPYVMGXLEVYEQQTA 160
Query: 161 FDDIVKSKVILI-WGYNPAATNPVLF-----GQYFE-KAILDNGAKLIVVDPVKTETAKY 213
+ +V++ +++ W +P TN + + G Y KA+ + G ++I ++PV+TETA Y
Sbjct: 161 WPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETADY 220
Query: 214 AHIHL-QPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAV------EKYTP 266
+ P P TD+A+ L M H + E+L+DKDF+ FD A + T
Sbjct: 221 FGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTA 280
Query: 267 EWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGK 326
EWA +I G+PA I E A F G + I + + L ++ G IG
Sbjct: 281 EWAAEICGLPAEQIRELARSF-VAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMIGQIGL 339
Query: 327 EGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPS--------K 378
G G+ G G + E A SE +P
Sbjct: 340 PGGGFGLSYHYSNGGSPTSDGPALGGISDGAKAVEXGAACLSESGATSIPCARVVDMLLN 399
Query: 379 PGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTETTKY 437
PG +Q +K Y G NP + +++ +A K +V D T T ++
Sbjct: 400 PGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARH 459
Query: 438 ADIVLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYF 494
ADIVLPA YE+ NR ++ + V P EA+ D++I LA+ +G G F
Sbjct: 460 ADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEF 519
Query: 495 N------------YSSVDDVLREINNVIPALKGATPERLAK--NLEGCMYPCPDENTETP 540
Y + N +P+ + E + + EG + + E P
Sbjct: 520 TEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDP 579
Query: 541 RLFLKGFPTKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVG----QFHTGTMSNRTKS 596
G P SG E+ + G +P W+ +G ++ +++ KS
Sbjct: 580 LFNPLGTP--SGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKS 637
Query: 597 -LKKRWPGPYV------------MINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENI 643
L + G + +IN DA GI GD++RV RG ++ +V++ +
Sbjct: 638 RLHSQLTGTSLRDLYAVVGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGTKVSDAV 697
Query: 644 REGVV 648
G +
Sbjct: 698 IPGAI 702
>pir||I40449 hypothetical protein 6 (replication origin region) - Bacillus
subtilis (fragment) >gi|40035|emb|CAA44413.1| (X62539)
unnamed protein product [Bacillus subtilis]
Length = 425
Score = 137 bits (342), Expect = 4e-31
Identities = 129/446 (28%), Positives = 209/446 (45%), Gaps = 37/446 (8%)
Query: 10 CPW-CSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
CP C C + DG K++ D N +GK+C +G PDRL+ P+K
Sbjct: 9 CPLNCWDSCGFLVTVDDGKVTKVDGDPNHPI-TEGKICGRGRMLETKTNSPDRLRYPMK- 66
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARAL 128
K G+F ISWE+A++ IA K +EI E+ E A L S +N LL+ L +
Sbjct: 67 ---KQNGEFVRISWEQALDEIADKLREIKETS--ETTAVLHSH--DYANNGLLKALDQRF 119
Query: 129 --GTNNV-EFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
G V E G +C S A+S FG P D I SK +++WG N + TN L+
Sbjct: 120 FNGYGGVTEIVGSICWGSGIEAQSWDFGRSYGHGPLD-IYNSKHVVVWGRNVSRTNMHLY 178
Query: 186 GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKD 245
+ + + GA + V+DP+ TAK A ++ PG D +A A+L V+I+ D+
Sbjct: 179 --HHLQQVKKKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDET 236
Query: 246 FVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHA 305
F++E FD + ++ + E + + A L+A G +T + G+ ++
Sbjct: 237 FISEHSVGFDDVKELLKTVSLEEFIVKTETSMEELEYLAGLYADGPVST-FMGLGMQRYK 295
Query: 306 NGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAK 365
NG T I L+A +GN+G +G GA+ G G + A+ +P + T++
Sbjct: 296 NGGGTIRWIDALVAASGNVGIKG------GGANFGNVQI--GESFAKTKLTLPELKTTSR 347
Query: 366 KFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFVV 425
FS + + + A + I+ I + NP + N++K+ +A ++ +
Sbjct: 348 SFSMM----------TQAEEVLTA-ADPAIEMIIVTCGNPLTQVPNTNKVRQAFEKVPMT 396
Query: 426 VA-DIFPTETTKYADIVLPAAAWYEK 450
VA D T+T + D VLP A +E+
Sbjct: 397 VAIDSIMTDTAELCDYVLPTATVFEE 422
>pir||T36812 probable dehydrogenase - Streptomyces coelicolor
>gi|5441785|emb|CAB46809.1| (AL096811) putative
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 747
Score = 137 bits (341), Expect = 5e-31
Identities = 124/453 (27%), Positives = 192/453 (42%), Gaps = 42/453 (9%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKR 68
+CP C C L + +VDG ++G +CPKG S PDRL+ PL R
Sbjct: 8 ICPLCEATCGLAL-TVDGSTVTAARGDRDDVFSRGFICPKGASFGAVDSDPDRLRAPLVR 66
Query: 69 VGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF-LGSERCSLEDNYLLQK-LAR 126
G+ E +WEEA + +A + ++E +GP ++ LG+ L L
Sbjct: 67 TN----GELREATWEEAFDAVAAGVRPLVERYGPHSVGVVLGNPNVHTMAGALYPNVLLG 122
Query: 127 ALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN----- 181
ALG+ ++ A L Q V+ +FG A P D+ ++ +L+ G NP +N
Sbjct: 123 ALGSRSLFTASTLDQMPKHVSSGLLFGD-ANAIPVPDLDRTDHLLLIGANPLESNGSLCT 181
Query: 182 -PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
P G+ +A+ G L VVDP +T TAK A H+ PG+D + AM HV+ +E
Sbjct: 182 APDFPGRL--RALKARGGTLTVVDPRRTRTAKLADRHVAIRPGSDALLLAAMAHVLYEEG 239
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
L D +A V D +A AV +TPE V A + A A A V G
Sbjct: 240 LVDLGALAPHVGGVDDVAAAVRDFTPESVAAACDVDADVTRALARELAAAPTAAVYGRIG 299
Query: 301 INQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN 360
+G+I + + L +TGN+ + G A P + P P
Sbjct: 300 SCTVPHGTIASWLVDVLNILTGNLDRPG-------------GALFPQAATDRTPRPAGPG 346
Query: 361 EETAKKFSELWGFEVPSKPGLHYQAIFDAMLE---------GKIKGIYIMGQNPARSLAN 411
A W V P + A+ E ++ + + NP S +
Sbjct: 347 RGFA---LGRWRSRVSGHPEAKGELPLSALAEEIDTATDAGEPVRALLTIAANPVLSAPD 403
Query: 412 SSKIEEALKRA-FVVVADIFPTETTKYADIVLP 443
++++AL+ F+V D + ET+++A +VLP
Sbjct: 404 GDRLDKALESLDFMVSVDPYLNETSRHAHVVLP 436
>dbj|BAA15123.1| (D90788) Formate dehydrogenase, nitrate-inducible, major subunit
(EC 1.2.1.2) (Formate dehydrogenase-N a subunit).
[Escherichia coli] >gi|1742417|dbj|BAA15132.1| (D90789)
Formate dehydrogenase, nitrate-inducible, major subunit
(EC 1.2.1.2) (Formate dehydrogenase-N a subunit).
[Escherichia coli]
Length = 1015
Score = 136 bits (340), Expect = 6e-31
Identities = 157/614 (25%), Positives = 235/614 (37%), Gaps = 140/614 (22%)
Query: 4 KLIPVVCPWCSVGCRLYIVSV-DGYPRKIEFDYN----PKTP-NKGKLCPKGVSSYQHYV 57
K I C +CSVGC L + S+ DG E Y+ P P ++G LCPKG +
Sbjct: 44 KEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVN 103
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE------------AL 105
+RL+ P R G K++ ISWEEA IAK K +++ E +
Sbjct: 104 SENRLRYPEYRA--PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLST 161
Query: 106 AFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIV 165
L + S E L QK AR+LG V+ R+ + + FG A TN + DI
Sbjct: 162 GMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASLAPTFGRGAMTNHWVDIK 221
Query: 166 KSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTD 225
+ V+++ G N A +PV F ++ +A +N A LIVVDP T TA A I+ GTD
Sbjct: 222 NANVVMVMGGNAAEAHPVGF-RWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTD 280
Query: 226 LAIALAMLHVIIKEELYDKDFVAERVN-----------------NFDA------------ 256
+ +L +I+ + ++V N +DA
Sbjct: 281 ITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNY 340
Query: 257 -----------------------LARAVEKYTPEWAEKISGVP-ASLIHEAAVLFATGG- 291
L V +YTP+ E I G P A + VL +T
Sbjct: 341 QLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAP 400
Query: 292 --NATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-GV 348
T + G QH G+ ++ + + GN+G G + G H + G+
Sbjct: 401 DRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLGL 459
Query: 349 NCAQLPGPVPLNEE-----------------------------------------TAKKF 367
LPG + L E A +
Sbjct: 460 LSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQK 519
Query: 368 SELWGFEVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFV 424
WG++ K Y I F+ M EGK+ G + G NP S + +K+ L K ++
Sbjct: 520 ENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYM 579
Query: 425 VVADIFPTETTKY------------ADIV-----LPAAAWYEKTGTVITQNRRVMRSFQA 467
VV D TET+ + A I LP+ + E+ G++ R + ++
Sbjct: 580 VVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKG 639
Query: 468 VKPPGEAKPDWEII 481
PGEA+ D EI+
Sbjct: 640 QDAPGEARNDGEIL 653
>pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escherichia coli
>gi|466689|gb|AAB18528.1| (U00039) biotin sulfoxide
reductase [Escherichia coli] >gi|1789973|gb|AAC76575.1|
(AE000432) biotin sulfoxide reductase [Escherichia coli
K12]
Length = 739
Score = 136 bits (340), Expect = 6e-31
Identities = 161/656 (24%), Positives = 272/656 (40%), Gaps = 77/656 (11%)
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL 121
L P G +G+ +F +SW+EA+++I ++ K I E++GP ++ F GS N +L
Sbjct: 29 LASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI-FAGS--YGWRSNGVL 85
Query: 122 QKLARALGTNNV---EFAGRLCQSSNFVARS---KIFGG----PAQTNPFDDIVKSKVIL 171
K + L + G L S A++ + GG QT+ + S V++
Sbjct: 86 HKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVV 145
Query: 172 IWGYNPAATNPVLF------GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQ---PYP 222
+W NP T + + G + A+ D+G KLI +DP+++ET + ++ P+
Sbjct: 146 LWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHM 205
Query: 223 GTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALAR-------AVEKYTPEWAEKISGV 275
GTD+A+ L + H +++ +D+ F+A + A + K T EWA +I GV
Sbjct: 206 GTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAK-TAEWAAEICGV 264
Query: 276 PASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVI 334
A+ I E A +F N T+++ G+ + G I L A+ G IG G G+
Sbjct: 265 GAAKIRELAAIFHQ--NTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLS 322
Query: 335 PGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGK 394
G + + G +P + K E PG YQ
Sbjct: 323 YHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQHNGMNRHFPD 382
Query: 395 IKGI-YIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYADIVLPAAAWYEKTGT 453
I+ I + G N + I K VV+++ F T K+ADIVLPA +E+
Sbjct: 383 IRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDL 442
Query: 454 VIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLR------ 504
+T N+ ++ Q V P EA+ D+++ L++ G Y ++ L+
Sbjct: 443 TMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFTEGKSELQWLETFY 502
Query: 505 ---------------------EINNVIPALKGATPERLAKNLEGCMYPCPDE-------- 535
+ N +I + ER + + C P
Sbjct: 503 NVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPLAHPLKTASGKI 562
Query: 536 NTETPRLFLKGFPTKSGKAE-LIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRT 594
+ R+ G+P G L P EW+ E + RL Q + ++
Sbjct: 563 EIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSL-REL 621
Query: 595 KSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAM 650
++ R P V I+ DA+ GI+ GD VR+ RG ++A A ++E I+ GV+ +
Sbjct: 622 YAVANREP---VTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICI 674
>sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE 1) (BSO REDUCTASE 1)
Length = 777
Score = 136 bits (340), Expect = 6e-31
Identities = 161/656 (24%), Positives = 272/656 (40%), Gaps = 77/656 (11%)
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL 121
L P G +G+ +F +SW+EA+++I ++ K I E++GP ++ F GS N +L
Sbjct: 67 LASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI-FAGS--YGWRSNGVL 123
Query: 122 QKLARALGTNNV---EFAGRLCQSSNFVARS---KIFGG----PAQTNPFDDIVKSKVIL 171
K + L + G L S A++ + GG QT+ + S V++
Sbjct: 124 HKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVV 183
Query: 172 IWGYNPAATNPVLF------GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQ---PYP 222
+W NP T + + G + A+ D+G KLI +DP+++ET + ++ P+
Sbjct: 184 LWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHM 243
Query: 223 GTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALAR-------AVEKYTPEWAEKISGV 275
GTD+A+ L + H +++ +D+ F+A + A + K T EWA +I GV
Sbjct: 244 GTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAK-TAEWAAEICGV 302
Query: 276 PASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVI 334
A+ I E A +F N T+++ G+ + G I L A+ G IG G G+
Sbjct: 303 GAAKIRELAAIFHQ--NTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLS 360
Query: 335 PGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGK 394
G + + G +P + K E PG YQ
Sbjct: 361 YHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQHNGMNRHFPD 420
Query: 395 IKGI-YIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYADIVLPAAAWYEKTGT 453
I+ I + G N + I K VV+++ F T K+ADIVLPA +E+
Sbjct: 421 IRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDL 480
Query: 454 VIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLR------ 504
+T N+ ++ Q V P EA+ D+++ L++ G Y ++ L+
Sbjct: 481 TMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFTEGKSELQWLETFY 540
Query: 505 ---------------------EINNVIPALKGATPERLAKNLEGCMYPCPDE-------- 535
+ N +I + ER + + C P
Sbjct: 541 NVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRDPLAHPLKTASGKI 600
Query: 536 NTETPRLFLKGFPTKSGKAE-LIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRT 594
+ R+ G+P G L P EW+ E + RL Q + ++
Sbjct: 601 EIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSL-REL 659
Query: 595 KSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAM 650
++ R P V I+ DA+ GI+ GD VR+ RG ++A A ++E I+ GV+ +
Sbjct: 660 YAVANREP---VTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICI 712
>gi|11499961 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483880|pir||H69547
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650704|gb|AAB91274.1| (AE001111) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 822
Score = 136 bits (339), Expect = 8e-31
Identities = 90/251 (35%), Positives = 123/251 (48%), Gaps = 6/251 (2%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRL 62
K +P +C C C + + DG +I P P N GK+C +G + Q +PDRL
Sbjct: 40 KFVPNICAMCPAACSIQVEVRDGKVHRIHG--TPDHPINNGKICARGNAGVQRVYNPDRL 97
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQ 122
KKPL R GEKG F E SWEEA+ +IA K KE E PE + LG +
Sbjct: 98 KKPLIRTGEKGTWSFREASWEEALSLIASKVKEYREMGHPEYIGMLGGWLPCTYYKPFFK 157
Query: 123 KLARALGT-NNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
ALGT N LC S + +G A D ++ +++ N A +
Sbjct: 158 AFLAALGTPNGGGVPEALCFLSKALGWKSAYGFGAHPELLTDYENARYVIMLRRNVAGSI 217
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEEL 241
V+ G + KL+V+DP +ETA A + L PGTDLA LAM++VII E+L
Sbjct: 218 SVVHG--WRLGQNRRKFKLVVLDPRYSETAAKADVWLPIKPGTDLAFLLAMMNVIINEKL 275
Query: 242 YDKDFVAERVN 252
YD +F+A+ N
Sbjct: 276 YDSNFLAKYSN 286
>emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter aerogenes]
Length = 241
Score = 135 bits (337), Expect = 1e-30
Identities = 81/250 (32%), Positives = 130/250 (51%), Gaps = 17/250 (6%)
Query: 133 VEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKA 192
V+ R+ + + G A +N +I + ++ I+GYNPA ++P++
Sbjct: 1 VDCCARVXHGPSVAGLHQSVGNGAMSNAITEIDNTDLVFIFGYNPADSHPIVANHVINAK 60
Query: 193 ILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVN 252
NGAK+IV DP K ETA+ A +H+ G+++A+ A+ HVII+E+LYDK FVA R
Sbjct: 61 --RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAIGHVIIEEDLYDKSFVASRSE 118
Query: 253 NFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAM 312
F+ + VE YTPE E+I+GV A I A ++A+ +A ++ G+ Q G T
Sbjct: 119 GFEEYRKIVEGYTPESVEEITGVSAQEIRACARMYASAKSAAILWGMGVTQFYQGVETVR 178
Query: 313 AISNLIAITGNIGKEGVFSGVIPGAH-----CGLCA---AVPGVNCAQLPGPVPLNEETA 364
++++L +TGN+GK V + G + C + A PG + P E
Sbjct: 179 SLTSLAILTGNLGKPSVGVNPVRGQNNVQGACDMGALPDTYPGYQYVKFP-------ENR 231
Query: 365 KKFSELWGFE 374
+KF+ WG +
Sbjct: 232 EKFARAWGVD 241
>gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Escherichia coli]
Length = 726
Score = 134 bits (333), Expect = 4e-30
Identities = 159/651 (24%), Positives = 271/651 (41%), Gaps = 68/651 (10%)
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL 121
L P G +G+ +F +SW+EA+++I ++ K I E++GP ++ F GS N +L
Sbjct: 29 LASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASI-FAGS--YGWRSNGVL 85
Query: 122 QKLARALGTNNV---EFAGRLCQSSNFVARS---KIFGG----PAQTNPFDDIVKSKVIL 171
K + L + G L S A++ + GG QT+ + S V++
Sbjct: 86 HKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEHSDVVV 145
Query: 172 IWGYNPAATNPVLF------GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQ---PYP 222
+W NP T + + G + A+ D+G KLI +DP+++ET + ++ P+
Sbjct: 146 LWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKMEWVAPHM 205
Query: 223 GTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALAR-------AVEKYTPEWAEKISGV 275
GTD+A+ L + H +++ +D+ F+A + A + K T EWA +I GV
Sbjct: 206 GTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAK-TAEWAAEICGV 264
Query: 276 PASLIHEAAVLFATGGNATVVL-NEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVI 334
A+ I E A +F N T+++ G+ + G I L A+ G IG G G+
Sbjct: 265 GAAKIRELAAIFHQ--NTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGTPGGGFGLS 322
Query: 335 PGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGK 394
G + + G +P + K E PG YQ
Sbjct: 323 YHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQHNGMNRHFPD 382
Query: 395 IKGI-YIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYADIVLPAAAWYEKTGT 453
I+ I + G N + I K VV+++ F T K+ADIVLPA +E+
Sbjct: 383 IRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDL 442
Query: 454 VIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNV- 509
+T N+ ++ Q V P EA+ D+++ L++ G Y ++ L+ +
Sbjct: 443 TMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFTEGKSELQWLETFY 502
Query: 510 -IPALKGATPE----RLAKNLEGCMYPCPDENTETPRL--FLKGFPTKSG-------KAE 555
+ +GA+ + A+ + EN ++ R F P +G K E
Sbjct: 503 NVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFAAFLPRSAGDPLKTQRKIE 562
Query: 556 LIPVEWKPPGEVPDEEYPFWLTNFRLVG----------------QFHTGTMSNRTKSLKK 599
+ G +P WL G + H+ + + L
Sbjct: 563 IFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYA 622
Query: 600 RWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAM 650
V I+ DA+ GI+ GD VR+ RG ++A A ++E I+ GV+ +
Sbjct: 623 VANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIKPGVICI 673
>gb|AAD13456.1| (AE000464) formate dehydrogenase-O, major subunit [Escherichia coli
K12]
Length = 1016
Score = 132 bits (329), Expect = 1e-29
Identities = 155/609 (25%), Positives = 233/609 (37%), Gaps = 142/609 (23%)
Query: 10 CPWCSVGCRLYIVSV-DGYPRK----IEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLK 63
C +CSVGC L + S+ DG + +P P N+G LCPKG RLK
Sbjct: 50 CTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLK 109
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESH----GPEALA--------FLGSE 111
P R G K+++ISWEEA + IAK KE +++ E + L +
Sbjct: 110 FPEYRA--PGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCAS 167
Query: 112 RCSLEDNYLLQKLARALGTNNVEFAGRLC-QSSNFVARSKIFGGPAQTNPFDDIVKSKVI 170
S E YL QK +RALG V+ R+ + + FG A TN + DI + ++
Sbjct: 168 ASSNETGYLTQKFSRALGMLAVDNQARV-UHGPTVASLAPTFGRGAMTNHWVDIKNANLV 226
Query: 171 LIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIAL 230
++ G N A +PV F ++ +A + NGAKLIV+DP T TA A + GTD+A
Sbjct: 227 VVMGGNAAEAHPVGF-RWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIRSGTDIAFLS 285
Query: 231 AMLHVIIKEELYDKDFVAERVN-----------------NFDA----------------- 256
+L ++ E +++++ N +DA
Sbjct: 286 GVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELDEN 345
Query: 257 ------------------LARAVEKYTPEWAEKISGVP----ASLIHEAAVLFATGGNAT 294
L + V +YTP+ E I G P + A A A+
Sbjct: 346 GFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKTAS 405
Query: 295 VVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-GVNCAQL 353
+ G QH+ G+ ++ + + GN+G G + G H + G+ L
Sbjct: 406 FLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLGLLSQSL 464
Query: 354 PG--------------------PVPLNEETAK------KF---------------SELWG 372
PG P PL E KF WG
Sbjct: 465 PGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSWG 524
Query: 373 FEVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADI 429
F+ K Y + F+ M EGK+ G G NP S N +K+ L K F+V D
Sbjct: 525 FDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTIDP 584
Query: 430 FPTETTKYAD-----------------IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPG 472
TET+ + LP+ + E+ G+++ R + ++ PG
Sbjct: 585 LNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAPG 644
Query: 473 EAKPDWEII 481
A D EI+
Sbjct: 645 IALTDGEIL 653
>pir||B83307 probable molybdopterin oxidoreductase PA2714 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948789|gb|AAG06102.1|AE004699_7 (AE004699) probable
molybdopterin oxidoreductase [Pseudomonas aeruginosa]
Length = 769
Score = 130 bits (324), Expect = 5e-29
Identities = 120/494 (24%), Positives = 223/494 (44%), Gaps = 27/494 (5%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C CS+ C L + + +G KI D + ++G +C K + DRL P++R
Sbjct: 13 CILCSLNCGLEVQTENGRISKIRGD-DDHPASQGYVCEKSQRMDYYQNGADRLDTPMRR- 70
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL----QKLA 125
+ +G +E I W+ AI +A+KF I HG E++ + G + N+L
Sbjct: 71 --RPDGSYEAIDWDTAIREVAEKFLAIKRRHGGESILYYGG---GAQGNHLGGAYGDSTL 125
Query: 126 RALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLF 185
+ALG A ++ F + K+FG T D + ++ G NP ++
Sbjct: 126 KALGVKYRSNALAQEKTGEFWVQGKMFG----TGVHGDFEHCEGAILIGKNPWQSHGFAR 181
Query: 186 GQYFEKAILDNGAK-LIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDK 244
+ A+ + A+ +IV+DP +ETA A HLQ PGTD A++ +I+++ L +
Sbjct: 182 ARVLLNAMAKDPARSIIVIDPRLSETAALADFHLQIRPGTDAWCLAALVGIIVQDGLLAR 241
Query: 245 DFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQH 304
D++AE + ++ + + + + GV + AA A+ + + + + G+ +
Sbjct: 242 DWLAEHTSGYEHIVDELNAIPVAYCAETCGVAEDKLRAAARRIASASSVSALEDLGMQMN 301
Query: 305 ANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETA 364
+ ++ + + +TG+ G+ G + +P L A G G + + +
Sbjct: 302 LHSTLGSYLQRLVWLLTGHYGRPGTSNAFVP--FLSLSKASKGDTSMGKRGAPRVEKRSP 359
Query: 365 KKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKR-AF 423
+++ +P + + + D + + + + NP SLA+S ++ EA++
Sbjct: 360 VANAKIIIGLIPCNV-IPEEILTDH--PKRYRAMLVETGNPLHSLADSQRMREAMRALEL 416
Query: 424 VVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK----PDWE 479
VV D+ TET ++AD VLPAA+ +EK +F P A+ P+ E
Sbjct: 417 SVVIDVAMTETARHADYVLPAASQFEKAEATFFNLEFPRNAFHLRAPLFPARPGTLPEAE 476
Query: 480 IIVMLAKSIG-LGE 492
I L +++G LGE
Sbjct: 477 IHARLLEAMGVLGE 490
>pir||B70838 hypothetical protein Rv0197 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909595|emb|CAA17319.1| (AL021928)
hypothetical protein Rv0197 [Mycobacterium tuberculosis]
Length = 762
Score = 130 bits (323), Expect = 6e-29
Identities = 128/499 (25%), Positives = 213/499 (42%), Gaps = 48/499 (9%)
Query: 6 IPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKP 65
+P C C C + + D +I D + G C K + + + RL P
Sbjct: 7 LPTACILCECNCGIVVQVDDRRLARIRGD-KAHPGSAGYTCNKALRLDHYQNNRARLSSP 65
Query: 66 LKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL----L 121
++R + +G +EEI W+ AI IA+ FK+I ++HG + + + G + N+L
Sbjct: 66 MRR---RADGTYEEIDWDTAIVEIAEGFKQIRDTHGGDKIFYYGGGG---QGNHLGGAYS 119
Query: 122 QKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
+ALG+ A ++ +++GG + + ++V + G NP +
Sbjct: 120 GAFLKALGSRYRSNALAQEKTGEAWVDFQLYGGHTR----GEFENAEVSVFVGKNPWMSQ 175
Query: 182 PVLFGQYFEKAIL-DNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEE 240
+ I D G +IV+DPV T+TAK A HL+ PG D A+ V+++E
Sbjct: 176 SFPRARVVLNEIAKDPGRSMIVIDPVVTDTAKMADFHLRVQPGCDAWCLAALAAVLVQEN 235
Query: 241 LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEG 300
L ++ F+A V+ D + A+++ + GV L+ AA T + +V + G
Sbjct: 236 LCNEAFLAAHVHGVDTVRAALQEVPVADYAQRCGVDEELLRAAARRIGTAASVSVFEDLG 295
Query: 301 INQHANGSITAMAISNLIAITGNIGKEG---VFSGVIPGAHCGLCAAVPGVNCAQLPGPV 357
I Q N ++ + L +TGN K+G + S P + P + G +
Sbjct: 296 IQQAPNSTVCSYLNKLLWILTGNFAKKGGQHLHSSFAP-LFSQVSGRTPVTGAPIIAGLI 354
Query: 358 PLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEE 417
P G VP + + F AM+ + NPA SLA+S+
Sbjct: 355 P-------------GNVVPEEILTEHPDRFRAMI--------VERGNPAHSLADSAACRA 393
Query: 418 ALKRA-FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKP-----P 471
A + +VV D+ TET + A VLPAA+ +EK FQ +P P
Sbjct: 394 AFQALELMVVVDVAMTETARLAHYVLPAASQFEKPEATFFNFEFPRNGFQLRRPLFPPLP 453
Query: 472 GEAKPDWEIIVMLAKSIGL 490
G P+ EI L +++G+
Sbjct: 454 G-TLPEPEIWARLVRALGV 471
>gb|AAD13438.1| (AE000244) formate dehydrogenase-N, nitrate-inducible, alpha
subunit [Escherichia coli K12]
Length = 1015
Score = 128 bits (318), Expect = 2e-28
Identities = 157/615 (25%), Positives = 235/615 (37%), Gaps = 142/615 (23%)
Query: 4 KLIPVVCPWCSVGCRLYIVSV-DGYPRKIEFDYN----PKTP-NKGKLCPKGVSSYQHYV 57
K I C +CSVGC L + S+ DG E Y+ P P ++G LCPKG +
Sbjct: 44 KEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVN 103
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE------------AL 105
+RL+ P R G K++ ISWEEA IAK K +++ E +
Sbjct: 104 SENRLRYPEYRA--PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLST 161
Query: 106 AFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLC-QSSNFVARSKIFGGPAQTNPFDDI 164
L + S E L QK AR+LG V+ R+ + + FG A TN + DI
Sbjct: 162 GMLCASGASNETGMLTQKFARSLGMLAVDNQARV-UHGPTVASLAPTFGRGAMTNHWVDI 220
Query: 165 VKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGT 224
+ V+++ G N A +PV F ++ +A +N A LIVVDP T TA A I+ GT
Sbjct: 221 KNANVVMVMGGNAAEAHPVGF-RWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGT 279
Query: 225 DLAIALAMLHVIIKEELYDKDFVAERVN-----------------NFDA----------- 256
D+ +L +I+ + ++V N +DA
Sbjct: 280 DITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWN 339
Query: 257 ------------------------LARAVEKYTPEWAEKISGVP-ASLIHEAAVLFATGG 291
L V +YTP+ E I G P A + VL +T
Sbjct: 340 YQLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSA 399
Query: 292 ---NATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-G 347
T + G QH G+ ++ + + GN+G G + G H + G
Sbjct: 400 PDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLG 458
Query: 348 VNCAQLPGPVPLNEE-----------------------------------------TAKK 366
+ LPG + L E A +
Sbjct: 459 LLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQ 518
Query: 367 FSELWGFEVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAF 423
WG++ K Y I F+ M EGK+ G + G NP S + +K+ L K +
Sbjct: 519 KENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKY 578
Query: 424 VVVADIFPTETTKY------------ADIV-----LPAAAWYEKTGTVITQNRRVMRSFQ 466
+VV D TET+ + A I LP+ + E+ G++ R + ++
Sbjct: 579 MVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWK 638
Query: 467 AVKPPGEAKPDWEII 481
PGEA+ D EI+
Sbjct: 639 GQDAPGEARNDGEIL 653
>gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin binding subunit
[Sulfolobus solfataricus]
Length = 1050
Score = 127 bits (316), Expect = 4e-28
Identities = 86/263 (32%), Positives = 135/263 (50%), Gaps = 28/263 (10%)
Query: 6 IPVVCPWCSVGCRLYIVS--VDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRL 62
+P +C +CS C + + + ++GY R +E D NP +P N+GK+CP+G + + DRL
Sbjct: 66 VPSICAFCSSTCDILVETEYINGYMRALEIDGNPLSPLNEGKVCPRGRAGIFRTYNVDRL 125
Query: 63 KKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFL---GSERCSLEDNY 119
K PL R G KG F E +WEE I I + K++ P+ FL G C+ NY
Sbjct: 126 KTPLIRTGPKGTWSFREATWEETINYIMQNIKQL----NPQPYEFLLIGGGIPCA---NY 178
Query: 120 LLQKLARALGTNNVEFAG---RLCQSSNFVARSKIFGG--PAQTNPFDDIVKSKVILIWG 174
+ LGT G + C S+ V + GG T+ DD+ S +I+ WG
Sbjct: 179 KPYFIPFTLGTQIPNINGTPMQTCLFSDQVPIGFVIGGFDLHATDMMDDMTYSSLIVAWG 238
Query: 175 YNPAATNPVLFGQYFEKAI-----LDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIA 229
T+ + G + +AI ++NGA +I +DP +E A A++ + PG+DL IA
Sbjct: 239 -----TSGIPAGIFVNRAIRYAKGIENGAYVIAIDPRMSEAASKANLWIPAKPGSDLYIA 293
Query: 230 LAMLHVIIKEELYDKDFVAERVN 252
+A+++ +I+ YD +FV N
Sbjct: 294 MAIINYLIQNNYYDDEFVRYYTN 316
>pir||G70389 formate dehydrogenase (EC 1.2.1.2) alpha chain - Aquifex aeolicus
Length = 1015
Score = 127 bits (316), Expect = 4e-28
Identities = 85/262 (32%), Positives = 133/262 (50%), Gaps = 21/262 (8%)
Query: 4 KLIPVVCPWCSVGCRLYIVSV-DGY----PRKIEFDYNPKTP-NKGKLCPKGVSSYQHYV 57
K+ +CP+CSV C + S+ DG R I + NP P N+G LCPKG +
Sbjct: 47 KVTKSICPYCSVSCGILAYSLSDGAMNVKERIIHVEGNPDDPINRGTLCPKGATLRDFVN 106
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILES------------HGPEAL 105
PDRL KPL R G +++EISW+EAIE A+ K+ + + +++
Sbjct: 107 APDRLTKPLYRPA--GSTEWKEISWDEAIEKFARWVKDTRDRTFIHKDKAGRVVNRCDSI 164
Query: 106 AFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIV 165
+ E+ +L+ K+ ALG + E +C + + + FG A TN + DI
Sbjct: 165 VWAVGSPLGNEEGWLMVKIGIALGLSARETQATICHAPTVASLAPTFGRGAMTNNWVDIS 224
Query: 166 KSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTD 225
S ++ + G NPA +P F ++ KA GAK+I +DP TA A I +Q PGTD
Sbjct: 225 NSDLVFVMGGNPAENHPCGF-KWAIKAREKRGAKIICIDPRFNRTAAVADIFVQIRPGTD 283
Query: 226 LAIALAMLHVIIKEELYDKDFV 247
+A +++ +++ E Y K++V
Sbjct: 284 IAFLGGLINYVLQNEKYQKEYV 305
>pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656488|gb|AAF95098.1|
(AE004270) biotin sulfoxide reductase [Vibrio cholerae]
Length = 815
Score = 126 bits (313), Expect = 9e-28
Identities = 172/721 (23%), Positives = 282/721 (38%), Gaps = 112/721 (15%)
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSE--RCS---LE 116
L P G +G +F +SW++A +I ++ I +++GP A F GS R S +
Sbjct: 97 LANPAAPKGVRGSDEFVRVSWDDAYRLIHEQHMRIRKTYGP-ASVFAGSYGWRSSGVLHK 155
Query: 117 DNYLLQKLARALGTNNVEFAGRLCQSSNFVAR-------SKIFGGPAQTNPFDDIVKSKV 169
LLQ+ G ++G L S A+ I QT + S V
Sbjct: 156 AQTLLQRYMSMAGG----YSGHLGDYSTGAAQIIMPHVVGSIEVYEQQTTYPVVLEHSDV 211
Query: 170 ILIWGYNPAATNPVLF------GQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQ---P 220
+++WG NP T + + G F + +G +I +DP+++ET ++ Q P
Sbjct: 212 VVLWGLNPINTLKIAWSSTDCAGLEFFHQLKKSGKTIIGIDPIRSETIEFFGEQAQWIAP 271
Query: 221 YPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALAR-------AVEKYTPEWAEKIS 273
+P TD+A+ + + H +IK+ +DK F+ + +D VEK + +WAE I
Sbjct: 272 HPMTDVAMMMGIAHSLIKQGKHDKAFLDKYTVGYDRFEAYLLGKEDGVEK-SAQWAEGIC 330
Query: 274 GVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEG----- 328
GVPA + A +F + ++ G+ + G + L A+ G IG G
Sbjct: 331 GVPAKQLETLAEIF-SNHRTMLMAGWGMQRQQYGEQRHWMVVTLAAMLGQIGLPGGGFGF 389
Query: 329 ---VFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLNE----ETAKKFSELWGFEVPSKPGL 381
+G P G+ +P ++ A G N+ + F E PG
Sbjct: 390 SYHYSNGGNPARDAGV---LPAISAAIGGGSSAGNDWAISGATQSFPVARIVEALENPGG 446
Query: 382 HYQAIFDAMLEGKIKGI-YIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYADI 440
YQ + +IK I + G N + I+ K +V+++ + T K+ADI
Sbjct: 447 AYQHNGHTLTFPEIKMIWWAGGANFTHHQDTNRLIKAWQKPELIVISEPYWTAAAKHADI 506
Query: 441 VLPAAAWYEKTGTVIT---QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGE----- 492
VLP +E+ +T N+ ++ Q V+P GEA+ D+++ +A+ I G
Sbjct: 507 VLPITTTFERNDLTMTGDYSNQHLVPMKQVVEPQGEARNDFDVFADMAEMIRPGGRDVFT 566
Query: 493 ---------YFNYSSVDDVLREINNVIPALKGATPERL-------AKNLEGCMYPCPDEN 536
Y Y + R +P + AKN + Y D
Sbjct: 567 EGKTEMEWLYGFYKTAQKSGRAARVAMPNFSKFWEDNQLIEMKWNAKNAQFVRY--ADFR 624
Query: 537 TETPRLFLKGFPTKSGKAELIPVEWKPPGEVPD-EEYPFWLTNFRLVGQFHTGTMSNRTK 595
+ L T SGK E+ + +PD +P WL G G + T
Sbjct: 625 ADP---ILNPLGTPSGKIEIYS-KTLAGFNLPDCPAHPTWLAPDEFTGNAKQGELQLMTA 680
Query: 596 SLKKRWPGPY----------------VMINERDAKRLGIRSGDLVRVETRRGSLVARAEV 639
R + + I+ DA GI++GDLVR +RG ++ A V
Sbjct: 681 HAAHRLHSQFNYAQLREEYAIANREPIWIHPEDAASRGIQTGDLVRAYNQRGQVLVGALV 740
Query: 640 TENIREGVVAM---PW-----------HWGFNYLTKDDAIDEFSKMPELKTAACRISKVE 685
T+ I++G V + W + G N LT D + ++ RI K
Sbjct: 741 TDRIKQGSVCIHEGGWPDLDPQTGLCKNGGANVLTSDIPTSRLANGCAANSSLVRIEKYT 800
Query: 686 G 686
G
Sbjct: 801 G 801
>sp|P46448|FDXG_HAEIN FORMATE DEHYDROGENASE MAJOR SUBUNIT (FORMATE DEHYDROGENASE ALPHA
SUBUNIT) (FDH ALPHA SUBUNIT)
Length = 1028
Score = 123 bits (305), Expect = 8e-27
Identities = 145/623 (23%), Positives = 231/623 (36%), Gaps = 149/623 (23%)
Query: 10 CPWCSVGCRLYIVSVDGYP--------------RKIEFDYNPKTP-NKGKLCPKGVSSYQ 54
C +C+V C + + S G P + + +P P ++G LCPKG S
Sbjct: 50 CTYCAVSCGMLLYST-GKPYNSLSSHTGTNTRSKLFHIEGDPDHPVSRGALCPKGAGSLD 108
Query: 55 HYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPE----------- 103
+ R P R G K+E ISW++AI+ IA+ K+ +++ E
Sbjct: 109 YVNSESRSLYPQYRA--PGSDKWERISWKDAIKRIARLMKDDRDANFVEKDSNGKTVNRW 166
Query: 104 -ALAFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFD 162
+ + S E L QK R LG V C + + FG A TN +
Sbjct: 167 ATTGIMTASAMSNEAALLTQKWIRMLGMVPVCNQANTCHGPTVASLAPSFGRGAMTNNWV 226
Query: 163 DIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYP 222
DI + +I++ G NPA +PV F E NGAK+IV+DP TA A +H
Sbjct: 227 DIKNANLIIVQGGNPAEAHPVGFRWAIEAK--KNGAKIIVIDPRFNRTASVADLHAPIRS 284
Query: 223 GTDLAIALAMLHVIIKEELYDKDFVAERVN------------------------NFD--- 255
G+D+ + ++ +++ ++V N N+D
Sbjct: 285 GSDITFLMGVIRYLLETNQIQHEYVKHYTNASFLIDEGFKFEDGLFVGYNEEKRNYDKSK 344
Query: 256 -------------------------ALARAVEKYTPEWAEKISGVPASLI----HEAAVL 286
L V +YTPE E+I+GV L E
Sbjct: 345 WNYQFDENGHAKRDMTLQHPRCVINILKEHVSRYTPEMVERITGVKQKLFLQICEEIGKT 404
Query: 287 FATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPG-------AHC 339
T + G +H+ G+ +++ + + GN+G G + G
Sbjct: 405 SVPNKTMTHLYALGFTEHSIGTQNIRSMAIIQLLLGNMGMPGGGINALRGHSNVQGTTDM 464
Query: 340 GLC-AAVPG---------------VNCAQ----LPGPVPLNEETAKKFSEL--------- 370
GL ++PG +N +P V T+K F +
Sbjct: 465 GLLPMSLPGYMRLPNDKDTSYDQYINAITPKDIVPNQVNYYRHTSKFFVSMMKTFYGDNA 524
Query: 371 -----WGFEVPSKPGLHYQAIFDAML--EGKIKGIYIMGQNPARSLANSSKIEEAL-KRA 422
WGF+ K Y I L EGK+ G + G N SL N +K + K
Sbjct: 525 TKENGWGFDFLPKADRLYDPITHVKLMNEGKLHGWILQGFNVLNSLPNKNKTLSGMSKLK 584
Query: 423 FVVVADIFPTETTKY------------ADIV-----LPAAAWYEKTGTVITQNRRVMRSF 465
++VV D TE++++ A+I LP + E+ G+++ R +
Sbjct: 585 YLVVMDPLQTESSEFWRNFGESNNVNPAEIQTEVFRLPTTCFAEEEGSIVNSGRWTQWHW 644
Query: 466 QAVKPPGEAKPDWEIIVMLAKSI 488
+ PGEA PD +I+ ML + +
Sbjct: 645 KGCDQPGEALPDVDILSMLREEM 667
>emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [Shewanella
putrefaciens]
Length = 829
Score = 122 bits (304), Expect = 1e-26
Identities = 164/696 (23%), Positives = 279/696 (39%), Gaps = 97/696 (13%)
Query: 58 HPDRLKKPLKRVG-----------EKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL- 105
+P R++ P+ R+ ++G+ +F ++W++A+++ E+ +GP L
Sbjct: 84 NPSRVRYPMVRLDFLLKGHKSNTQQRGDFRFVRVTWDKALKLFKHSLDEVQTKYGPSGLH 143
Query: 106 AFLGSERCSLEDNYLLQKLARALGT--NNVEFAGRLCQSSNFVARSKIFGGP---AQTNP 160
A R + + + + RA+G N V+ G + + G AQ
Sbjct: 144 AGQTGWRATGQLHSSTSHMQRAVGMHGNFVKKIGDYSTGAGQTILPYVLGSTEVYAQGTS 203
Query: 161 FDDIVK-SKVILIWGYNP---------AATNPVL-FGQYFEKAILDNGAKLIVVDPVKTE 209
+ I++ S I++W NP A T+ + ++ + ++I +DPV T+
Sbjct: 204 WPLILENSNTIVLWSNNPYKNLQVGWNAETHEAFAYLAQLKEKVKQGKIRVISIDPVVTK 263
Query: 210 TAKYAHI-HLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------ 262
T Y L P TD+ + LA+ H +I ++L+D+ F+ F+ V
Sbjct: 264 TQAYLGCEQLYVNPQTDVTLMLAIAHEMITQKLHDEKFIQGYSLGFEEFVPYVMGTKDGI 323
Query: 263 KYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITG 322
TPEWA I GV +I + A G +++ I + +G + L + G
Sbjct: 324 AKTPEWAAPICGVEPHIIRDLAKTLVK-GRTQIMMGWCIQRQQHGEQPYWMAAVLATMIG 382
Query: 323 NIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN-EETAKKFSELWGFEVPS---- 377
IG G G I H VP A PG P N +E K + F+ S
Sbjct: 383 QIGLPG---GGISYGHHYSSIGVPATTAA-APGAFPRNLDENQKPLFDSTDFKGASSTIP 438
Query: 378 ---------KPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFVVVA- 427
+PG A ++ IK + G NP + +++++A ++ VV+
Sbjct: 439 VARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFQKLECVVSI 498
Query: 428 DIFPTETTKYADIVLPAAAWYEKTGTVI---TQNRRVMRSFQAVKPPGEAKPDWEIIVML 484
D+ T T +++DIVLPA YE+ + NR ++ + V+P E+ D+EI
Sbjct: 499 DVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFESLSDFEIFTRF 558
Query: 485 AKSIGL-GEYFNYSSVDDVLREINNVIPALKGATPER----------LAKNLEGCMYPCP 533
A +G EY S + + + N A E EG ++
Sbjct: 559 AALLGKEKEYTRNMSEMEWIETLYNECKAANAGKYEMPDFATFWKQGYVHFGEGELWTRH 618
Query: 534 DENTETPRLFLKGFPTKSGKAELIPVE--------------W-----KPPGEVPDEEYPF 574
+ P + G P SG E+ + W + G +YP
Sbjct: 619 ADFRNDPEINPLGTP--SGLIEIFSRKIEQFGYDDCQGHPMWMEKAERSHGGPGSNKYPM 676
Query: 575 WL----TNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRR 630
WL + RL Q T ++ R P V I+ DAK GI+ GD+VRV R
Sbjct: 677 WLQSCHPDHRLHSQMCESKEYRETYTVNGREP---VYISPEDAKTRGIKDGDIVRVFNDR 733
Query: 631 GSLVARAEVTENIREGVVAMPWHWGFNYLTKDDAID 666
G L+A A V++ +GVV + + + KD +++
Sbjct: 734 GQLLAGAVVSDRFPKGVVRIHEGAWYGPVGKDGSVE 769
>pir||G82168 trimethylamine-N-oxide reductase VC1692 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656209|gb|AAF94842.1| (AE004247)
trimethylamine-N-oxide reductase [Vibrio cholerae]
Length = 820
Score = 121 bits (300), Expect = 3e-26
Identities = 171/671 (25%), Positives = 274/671 (40%), Gaps = 91/671 (13%)
Query: 57 VHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL--AFLGSERCS 114
V D LKK +G +F ++W+EAI++ ++ + + + +GP AL G +
Sbjct: 93 VRLDWLKKHKYSAETRGNNRFIRVTWDEAIDLFYRELERVQKQYGPWALHAGQTGWNQTG 152
Query: 115 LEDNYLLQKLARALGT--NNVEFAGRLCQSSNFVARSKIFGGP---AQTNPFDDIV-KSK 168
N + RA+G N + G + + G AQ + +I+ S
Sbjct: 153 AFHNCTAM-MQRAVGMHGNYITKVGDYSTGAGQTIMPYVLGSTEVYAQGTSWSEILDNSD 211
Query: 169 VILIWGYNPAATNPV--------LFG--QYFEKAILDNGAKLIVVDPVKTETAKYA-HIH 217
I++W +P V FG ++ + ++ VDPVK +T ++ + H
Sbjct: 212 NIILWANDPVKNLQVGWNCETHQSFGYLDQLKEKVAKGEINVVSVDPVKNKTQRFLQNDH 271
Query: 218 LQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFD-----ALARAVEKY--TPEWAE 270
L P TD+A LA+ HV+ E LYDK F+ F+ L ++ +K TPEWA
Sbjct: 272 LYINPQTDVAFMLALAHVLYTENLYDKKFIETYCLGFEEFIPYVLGKSKDKVEKTPEWAA 331
Query: 271 KISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVF 330
I GV I + A + G ++ I + +G + L A+ G IG G
Sbjct: 332 TICGVKPDAIRDFARML-VNGRTQLLFGWCIQRQEHGEQPYWMGAVLAAMIGQIGLPG-- 388
Query: 331 SGVIPGAHCGLCAAVPGVNCAQLPGPVPLN-EETAKKFSELWGFEVPSKPGLHYQAIFDA 389
G I H VP A PG P N ++ AK + F S+ + DA
Sbjct: 389 -GGISYGHHYSGIGVPSTGFAG-PGGFPRNLDQGAKPKWDNNDFNGYSRT-IPVARWIDA 445
Query: 390 MLE-GK-------------IKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIFPTET 434
+LE GK K + I G NP + +K++ A K VV D T T
Sbjct: 446 ILEPGKKINHNGNTVTLPGFKMMVISGCNPWHHHQDRNKMKRAFQKLETVVTIDFSWTAT 505
Query: 435 TKYADIVLPAAAWYEKT---GTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLG 491
+++DIVLPA +E+ + ++ + V P +++ D+EI+ L + G
Sbjct: 506 CRFSDIVLPACTQWERNDIDSYGSYSGKGLIAMHRLVDPLFQSRTDFEIMTELTRRFGRE 565
Query: 492 EYFNYSSVDDVLREINNVIPALKGATPERLA--KNLEGCMYPCPDENTETPRL------- 542
+ Y+ D + + ++ K A + A + E D T TP +
Sbjct: 566 K--EYTRGMDEMEWVRSLYDECKKANEGKFAMPEFEEFWEKGFLDFGTGTPWVRHADFRK 623
Query: 543 --FLKGFPTKSGKAELIPVE--------------W-----KPPGEVPDEEYPFWLTNF-- 579
+ T SG E+ + W + G +++PFWL +
Sbjct: 624 DPEINALGTPSGFIEITSRKIGRYGYEHCQEHPMWFEKTERSHGGPGSDKHPFWLQSCHP 683
Query: 580 --RLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSLVARA 637
RL Q T +++ R P V IN DAK GI+ GDLVRV RG L+A A
Sbjct: 684 DKRLHSQMCEAEAFRATYAVQGREP---VYINPLDAKAKGIKDGDLVRVFNDRGQLLAGA 740
Query: 638 EVTENIREGVV 648
++++ GV+
Sbjct: 741 VLSDSYPRGVI 751
>gb|AAB03027.1| (L19201) formate dehydrogenase-O alpha subunit [Escherichia coli]
Length = 1016
Score = 120 bits (297), Expect = 7e-26
Identities = 147/608 (24%), Positives = 225/608 (36%), Gaps = 140/608 (23%)
Query: 10 CPWCSVGCRLYIVSV-DGYPRK----IEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLK 63
C +CSVGC L + S+ DG + +P P N+G LCPKG RLK
Sbjct: 50 CTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLK 109
Query: 64 KPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESH----GPEALA--------FLGSE 111
P R G K+++ISWEEA + IAK KE +++ E + L +
Sbjct: 110 FPEYRA--PGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCAS 167
Query: 112 RCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVIL 171
S E YL QK +RALG V+ R+ + + FG A TN + DI + +++
Sbjct: 168 ASSNETGYLTQKFSRALGMLAVDNQARVXHGPTVASLAPTFGRGAMTNHWVDIKNANLVV 227
Query: 172 IWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALA 231
+ G N A +PV F ++ +A + N + T TA A + GTD+A
Sbjct: 228 VMGGNAAEAHPVGF-RWAMEAKIHNRREADCDRSCFTRTAAVADYYAPIRSGTDIAFLSG 286
Query: 232 MLHVIIKEELYDKDFVAERVN-----------------NFDA------------------ 256
+L ++ E +++++ N +DA
Sbjct: 287 VLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELDGKR 346
Query: 257 -----------------LARAVEKYTPEWAEKISGVP----ASLIHEAAVLFATGGNATV 295
L + V +YTP+ E I G P + A A A+
Sbjct: 347 LRKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKTASF 406
Query: 296 VLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVP-GVNCAQLP 354
+ G QH+ G+ ++ + + GN+G G + G H + G+ LP
Sbjct: 407 LYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRG-HSNIQGLTDLGLLSQSLP 465
Query: 355 G--------------------PVPLNEETAK------KF---------------SELWGF 373
G P PL E KF WGF
Sbjct: 466 GYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSWGF 525
Query: 374 EVPSKPGLHYQAI--FDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVADIF 430
+ K Y + F+ M EGK+ G G NP S N +K+ L K F+V D
Sbjct: 526 DWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTIDPL 585
Query: 431 PTETTKYAD-----------------IVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGE 473
TET+ + LP+ + E+ G+++ R + ++ PG
Sbjct: 586 NTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAPGI 645
Query: 474 AKPDWEII 481
A D EI+
Sbjct: 646 ALTDGEIL 653
>sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR (TMAO REDUCTASE)
(TRIMETHYLAMINE OXIDASE) >gi|4699615|pdb|1TMO|
Trimethylamine N-Oxide Reductase From Shewanella
Massilia >gi|3327031|emb|CAA06851.1| (AJ006085)
trimethylamine-N-oxide reductase [Shewanella massilia]
Length = 829
Score = 118 bits (293), Expect = 2e-25
Identities = 161/677 (23%), Positives = 270/677 (39%), Gaps = 95/677 (14%)
Query: 58 HPDRLKKPLKRVG-----------EKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL- 105
+P R++ P+ R+ ++G+ +F ++W++A+ + E+ +GP L
Sbjct: 84 NPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLH 143
Query: 106 AFLGSERCSLEDNYLLQKLARALGT--NNVEFAGRLCQSSNFVARSKIFGGP---AQTNP 160
A R + + + + RA+G N V+ G + + G AQ
Sbjct: 144 AGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGSTEVYAQGTS 203
Query: 161 FDDIVK-SKVILIW----------GYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTE 209
+ I++ S I++W G+N + ++ + ++I +DPV T+
Sbjct: 204 WPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTK 263
Query: 210 TAKYAHIH-LQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVE------ 262
T Y L P TD+ + LA+ H +I ++LYD F+ F+ V
Sbjct: 264 TQAYLGCEQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGV 323
Query: 263 KYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITG 322
TPEWA I GV A +I + A G ++ I + +G + L + G
Sbjct: 324 AKTPEWAAPICGVEAHVIRDLAKTLVKG-RTQFMMGWCIQRQQHGEQPYWMAAVLATMIG 382
Query: 323 NIGKEGVFSGVIPGAHCGLCAAVPGVNCAQLPGPVPLN-EETAKKFSELWGFEVPS---- 377
IG G G I H VP A PG P N +E K + F+ S
Sbjct: 383 QIGLPG---GGISYGHHYSSIGVPSSGAAA-PGAFPRNLDENQKPLFDSSDFKGASSTIP 438
Query: 378 ---------KPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEAL-KRAFVVVA 427
+PG A ++ IK + G NP + +++++A K VV
Sbjct: 439 VARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTV 498
Query: 428 DIFPTETTKYADIVLPAAAWYEKTGTVI---TQNRRVMRSFQAVKPPGEAKPDWEIIVML 484
D+ T T +++DIVLPA YE+ + NR ++ + V+P ++ D+EI
Sbjct: 499 DVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRF 558
Query: 485 AKSIGL-GEYFNYSSVDDVLREINNVIPAL---KGATPERLAKNLEGCMYPCPDENTETP 540
A +G EY + L + N A K P+ +G ++ D T
Sbjct: 559 AAVLGKEKEYTRNMGEMEWLETLYNECKAANAGKFEMPDFATFWKQGYVH-FGDGEVWTR 617
Query: 541 RLFLKGFP------TKSGKAELIPVE--------------W-----KPPGEVPDEEYPFW 575
+ P T SG E+ + W + G +++P W
Sbjct: 618 HADFRNDPEINPLGTPSGLIEIFSRKIDQFGYDDCKGHPTWMEKTERSHGGPGSDKHPIW 677
Query: 576 LTNFRLVGQFHTGTMSNR----TKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRG 631
L + + H+ +R T ++ R P V I+ DAK GI+ GD+VRV RG
Sbjct: 678 LQSCHPDKRLHSQMCESREYRETYAVNGREP---VYISPVDAKARGIKDGDIVRVFNDRG 734
Query: 632 SLVARAEVTENIREGVV 648
L+A A V++N +G+V
Sbjct: 735 QLLAGAVVSDNFPKGIV 751
>gb|AAC07107.1| (AE000720) formate dehydrogenase alpha subunit [Aquifex aeolicus]
Length = 1015
Score = 115 bits (286), Expect = 1e-24
Identities = 85/267 (31%), Positives = 133/267 (48%), Gaps = 31/267 (11%)
Query: 4 KLIPVVCPWCSVGCRLYIVSV-DGY----PRKIEFDYNPKTP-NKGKLCPKGVSSYQHYV 57
K+ +CP+CSV C + S+ DG R I + NP P N+G LCPKG +
Sbjct: 47 KVTKSICPYCSVSCGILAYSLSDGAMNVKERIIHVEGNPDDPINRGTLCPKGATLRDFVN 106
Query: 58 HPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILES------------HGPEAL 105
PDRL KPL R G +++EISW+EAIE A+ K+ + + +++
Sbjct: 107 APDRLTKPLYRPA--GSTEWKEISWDEAIEKFARWVKDTRDRTFIHKDKAGRVVNRCDSI 164
Query: 106 AFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSS-----NFVARSKIFGGPAQTNP 160
+ E+ +L+ K+ ALG + R Q++ + + FG A TN
Sbjct: 165 VWAVGSPLGNEEGWLMVKIGIALG-----LSARETQATIUHAPTVASLAPTFGRGAMTNN 219
Query: 161 FDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQP 220
+ DI S ++ + G NPA +P F ++ KA GAK+I +DP TA A I +Q
Sbjct: 220 WVDISNSDLVFVMGGNPAENHPCGF-KWAIKAREKRGAKIICIDPRFNRTAAVADIFVQI 278
Query: 221 YPGTDLAIALAMLHVIIKEELYDKDFV 247
PGTD+A +++ +++ E Y K++V
Sbjct: 279 RPGTDIAFLGGLINYVLQNEKYQKEYV 305
>pir||D81349 nitrate reductase (EC 1.7.99.4), periplasmic Cj0780 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968226|emb|CAB73045.1| (AL139076) periplasmic
nitrate reductase [Campylobacter jejuni]
Length = 924
Score = 114 bits (283), Expect = 3e-24
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 9 VCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLK 67
VC +C GC + I DG + + +P P N+G C KG + + DRL PL
Sbjct: 41 VCRFCGTGCGIMIARKDG--KIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLL 98
Query: 68 RVGEKGE----GKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
R+ EKGE GKF+++SW+ A + + K+FK+ G + GS + ++++ Y K
Sbjct: 99 RMNEKGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALK 158
Query: 124 LARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
LA+A TNN++ R C +S V + FG + +DDI + I+ WG N A +P
Sbjct: 159 LAKAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP 218
Query: 183 VLFGQYFEKAILD-NGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAI 228
+L+ + ++ + + + K++ + T+ A I + P TDLAI
Sbjct: 219 ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAI 265
Score = 79.6 bits (193), Expect = 1e-13
Identities = 74/268 (27%), Positives = 114/268 (41%), Gaps = 18/268 (6%)
Query: 253 NFDALARAVEKYTPEWAEKISGVPAS--------LIHEAAVLFATGGNATVVL-NEGINQ 303
+FD + + YT E+ +++ + + E A L+ V G NQ
Sbjct: 362 SFDEFKKGLAPYTLEYTARVAKGDDNESLEDFKKKLQELANLYIEKNRKVVSFWTMGFNQ 421
Query: 304 HANGSITAMAISNLIAITGNIGK--EGVFSGVIPGAHCGLCAAVPGVNCAQLPGPV---- 357
H GS + + G K G FS + CG V G +LP +
Sbjct: 422 HTRGSWVNEQAYMVHFLLGKQAKPGSGAFSLTGQPSACGTAREV-GTFSHRLPADMVVAN 480
Query: 358 PLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEE 417
P + E ++K ++ + KPG Y I + +GKIK ++ NP ++ AN++
Sbjct: 481 PKHREISEKIWKVPAKTINPKPGSPYLNIMRDLEDGKIKFAWVQVNNPWQNTANANHWIA 540
Query: 418 ALKRA--FVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAK 475
A + F+VV+D +P + K AD++LP+A YEK G RR Q V P G A
Sbjct: 541 AAREMDNFIVVSDCYPGISAKVADLILPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAM 600
Query: 476 PDWEIIVMLAKSIGLGEYFNYSSVDDVL 503
D I+ AK L E + VD+ L
Sbjct: 601 SDTWQILEFAKRFKLKEVWKEQKVDNKL 628
Score = 79.2 bits (192), Expect = 1e-13
Identities = 45/122 (36%), Positives = 68/122 (54%), Gaps = 4/122 (3%)
Query: 566 EVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVR 625
E P +EYPFWL R++ +H+GTM+ R L + P ++E+D ++LG+ GDLV
Sbjct: 802 ERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQGDLVW 861
Query: 626 VETRRGSLVARAEVTENIRE--GVVAMPWHWGFNYLTKD--DAIDEFSKMPELKTAACRI 681
VE+RRG + AR ++ + G+V +PW Y+ K DA SK + K A +I
Sbjct: 862 VESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDFKKCAVKI 921
Query: 682 SK 683
K
Sbjct: 922 YK 923
>pir||T35749 probable formate dehydrogenase - Streptomyces coelicolor
>gi|5689897|emb|CAB52060.1| (AL109732) putative formate
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 759
Score = 112 bits (277), Expect = 2e-23
Identities = 164/667 (24%), Positives = 266/667 (39%), Gaps = 95/667 (14%)
Query: 72 KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARALGTN 131
+G +E ++WE A I+A+ EI + F S R S E +L Q AR LGTN
Sbjct: 129 EGGAHYEPVTWERAFGIVAE---EIAALESADEAVFYTSGRTSNEAAFLYQLFARELGTN 185
Query: 132 NVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEK 191
N+ +C S+ A S+ G + +D+ KS +I++ G NP +P + EK
Sbjct: 186 NLPDCSNMCHESSGSALSETIGVGKGSVLLEDLYKSDLIIVAGQNPGTNHPRMLSA-LEK 244
Query: 192 AILDNGAKLIVVDPVK----------------TETAKYAHIHLQPYPGTDLAIALAMLHV 235
A NGA++I ++P+ T A + LQ G D A+ + +
Sbjct: 245 A-KANGARIISINPLPEAGLERFKNPQTPKGLTAGASLTDLFLQIRLGGDQALFRLLNKL 303
Query: 236 IIKEE-LYDKDFVAERVNNFDALARAVEKYTPEWAEKI--SGVPASLIHEAAVLFATGGN 292
I++ + D+ FV E + ++ A A +W + + +G+ + I EA +
Sbjct: 304 ILETQGAVDEAFVEEHTHGYEEFAAAAR--AADWDDTLAATGLTRAEIEEALRMVLDSER 361
Query: 293 ATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGVNCAQ 352
V G+ QH + T + N + + GNIG+ G +GV P V G + Q
Sbjct: 362 TIVCWAMGLTQHKHSVPTIREVVNFLLLRGNIGRPG--AGVCP---------VRGHSNVQ 410
Query: 353 LPGPVPLNEETAKKFSEL----WGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQNPARS 408
+ + E A F + +GF P + G A+ +G+ K + MG N +
Sbjct: 411 GDRTMGIFERPAPAFLDALEKEFGFAPPREHGYDVVRAIRALRDGEAKVFFAMGGNFVSA 470
Query: 409 LANSSKIEEALKRAFVVV----------------ADIFPTETTKYADIVLPAAAWYEKTG 452
++ E A++RA + V A I PT D+ E+
Sbjct: 471 SPDTEVTEAAMRRARLTVHVSTKLNRSHAVTGARALILPTLGRTERDL----QGGGEQFV 526
Query: 453 TVITQNRRVMRSFQAVKP-PGEAKPDWEIIVMLAKSIGLGEYF---------NYSSVDDV 502
TV V S ++P G+ + I+ LA+ + LGE +Y+++ D
Sbjct: 527 TVEDSMGMVHASRGRLEPASGQLLSEPAIVCRLARRV-LGEESRTPWEEFEKDYATIRD- 584
Query: 503 LREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAEL--IPVE 560
I V+P + R+A + P + + FPT +GKA PVE
Sbjct: 585 --RIGRVVPGFEDFN-ARVAHPGGFALPHAPRDE--------RRFPTATGKANFTAAPVE 633
Query: 561 WKPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRS 620
+ E+P E L R Q++T + R V++N DA+RLG+
Sbjct: 634 FP---ELP--EGRLLLQTLRSHDQYNTTIYGLDDRYRGIRNGRRVVLVNPEDARRLGVED 688
Query: 621 GDLV-RVETRRGSLVARA---EVTENIREGVVAMPWHWGFNYLTKDDAIDEFSKMPELKT 676
G V V R + RA V A ++ N L DA + S P K+
Sbjct: 689 GSYVDLVSEWRDGVERRAPGFRVVHYPTARGCAAAYYPETNVLVPLDATADTSNTPASKS 748
Query: 677 AACRISK 683
R+ +
Sbjct: 749 VVVRLEQ 755
>sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|2126474|pir||S65669 biotin sulfoxide reductase (EC
1.8.4.-) - Rhodobacter sphaeroides
>gi|953224|gb|AAA74739.1| (U08189) biotin sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 744
Score = 110 bits (273), Expect = 4e-23
Identities = 155/644 (24%), Positives = 263/644 (40%), Gaps = 81/644 (12%)
Query: 72 KGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGS---ERCSL--EDNYLLQKLAR 126
+G +F +SW+ A++++A + + + HG A+ F GS C + LL+++
Sbjct: 50 RGRERFLPVSWDAALDLVAGEIRRVSADHGNAAI-FAGSYGWTSCGRFHHASTLLKRMLN 108
Query: 127 ALG--TNNVE---FAGRLCQSSNFVARSKIFGGPAQTNPFDDIVK-SKVILIWGYNPAAT 180
+G T +V+ A + + + GG Q N D I + S+ ++++G T
Sbjct: 109 LVGGFTGHVDTYSIAAGPVILRHTLGDDRACGG--QANTLDSIAEHSQTLVVFGAMSPRT 166
Query: 181 NPVLFG-------QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPY-PGTDLAIALAM 232
G + + + I++ G ++I+V P+K + + P P TD A+ L +
Sbjct: 167 AQSEAGGIGAHHLETYLRRIVERGVRVILVSPLKDDLPDWVAAEWWPIRPNTDTALMLGL 226
Query: 233 LHVIIKEELYDKDFVAERVNNFD---ALARAVEKYTP---EWAEKISGVPASLIHE-AAV 285
I++ D DF+A + + A R P EWA I+G+PA I A
Sbjct: 227 AGEIVRSGRQDSDFLARCTSGSELYLAYLRGEGDGRPKDAEWASTITGLPAEAIRALAGD 286
Query: 286 LFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAV 345
L T TV + + + +G A L A+ G IG+ G GV G ++
Sbjct: 287 LPRTRSMLTV--SWSLQRAHHGEQPFWAALGLAAVIGQIGRPG--GGVGYG-----YGSL 337
Query: 346 PGVNCAQLPGPVPLNEETAKKFSELWGF----EVPSKPGLHYQAIFDAMLEGKIKGIYIM 401
GV G P + +K + ++ PG Y + I+ +Y
Sbjct: 338 GGVGAPFTIGKSPAMSQLSKPINSFIPVARISDMLLNPGGPYSYEGEDRRYPDIRLVYWS 397
Query: 402 GQNPARSLANSSKIEEALKR-AFVVVADIFPTETTKYADIVLPAAAWYEKTGTVITQNRR 460
G NP + +++ EA R ++V D T T K ADIVLPA+ E+ + N+R
Sbjct: 398 GGNPFHHHQDLNRLSEAWTRPETIIVQDPMFTATAKRADIVLPASTSIERND--LAGNKR 455
Query: 461 ---VMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIPALKG-- 515
++ QA+ P GEA+ D++I L+ +G+ FN D + I ++ +
Sbjct: 456 SDFILAMGQAIAPLGEARSDFDIFNALSGKLGVAAAFNEGR--DEMGWIRHLYEESRNHA 513
Query: 516 ------ATPERLAKNLEGCMYPCPDENTETPRLFLKGFP------TKSGKAELIPVEWKP 563
P+ +G PCP + T + P T+SG L
Sbjct: 514 QRHHHFEMPDFETFWAQG-HAPCPVQRDHTYLAAFREDPGAHPLDTESGLIVLGSATLAR 572
Query: 564 PGEVPDEEYPFW----------------LTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVM 607
G +P W L + + G+ H+ + KR VM
Sbjct: 573 LGYADCGPHPAWIEPAEWLGKAQAGELHLISHQPKGRLHSQLETAEASLAGKREGRDEVM 632
Query: 608 INERDAKRLGIRSGDLVRVETRRGSLVARAEVTENIREGVVAMP 651
++ DA GI G VR+ RG+ +A A+VT+++ GV +P
Sbjct: 633 LHPDDASVRGIADGQTVRLWNARGACLATAQVTDSVAAGVAILP 676
>gi|11497793 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483879|pir||H69271
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650469|gb|AAB91056.1| (AE001094) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 896
Score = 109 bits (270), Expect = 1e-22
Identities = 85/258 (32%), Positives = 126/258 (47%), Gaps = 29/258 (11%)
Query: 4 KLIPVVC-PWCSVGCRLYIVSVDG----------YPRKIEFDYNPKTPNKGKLCPKGVSS 52
K + VC P C+ C + +G YP E +YNP+ C +G S
Sbjct: 40 KTVRSVCSPNCTGACGFDALVYNGRIETLTQAADYP---EPEYNPRG------CLRGQSM 90
Query: 53 YQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAF-LGSE 111
PDRLK+PL RVG++GEGKF+ +SW+EA++ +A + +I++ HGPE++A +
Sbjct: 91 MNLIYGPDRLKRPLIRVGKRGEGKFKAVSWDEALDYVADRLADIMKRHGPESVAISIQVP 150
Query: 112 RCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDI--VKSKV 169
+ +LA G + + G S+ FG QT F+ + SK
Sbjct: 151 GTGYVHKGAMMRLASMFGWSALH--GYTMNGDLPAFWSQTFG--VQTEEFESLEWTNSKY 206
Query: 170 ILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIA 229
I I+G N T L F + GAK++VVDP + TA A +Q P TD A A
Sbjct: 207 IAIFGSNIMVTR--LPDAKFVNIAAERGAKVVVVDPNFSPTAAKADEWVQINPSTDSAFA 264
Query: 230 LAMLHVIIKEELYDKDFV 247
LA+ II+ LYD++F+
Sbjct: 265 LAIAREIIENRLYDEEFI 282
>pir||H64903 hypothetical protein b1501 - Escherichia coli
>gi|1742462|dbj|BAA15174.1| (D90792) Formate
dehydrogenase a chain (EC 1.2.1.2). [Escherichia coli]
>gi|1787778|gb|AAC74574.1| (AE000247) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 759
Score = 108 bits (268), Expect = 2e-22
Identities = 97/383 (25%), Positives = 163/383 (42%), Gaps = 54/383 (14%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL +PLK + ++ +SW++A + I + + + P + F S R S E +L
Sbjct: 108 RLTQPLKY--DAVSDCYKPLSWQQAFDEIGARLQSYSD---PNQVEFYTSGRTSNEAAFL 162
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Q AR G+NN +C V + G T +D K +++ G+NP
Sbjct: 163 YQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTN 222
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYP------------------ 222
+P + +A++ GAK+I ++P++ + P+
Sbjct: 223 HPRMLTSL--RALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRI 280
Query: 223 GTDLAIALAMLHVIIKEE----------LYDKDFVAERVNNFDALARAVEKYTPEWA--E 270
G D+A+ M+ ++I+ + L D +F+ FD L R V EW E
Sbjct: 281 GGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDV--LNSEWKDIE 338
Query: 271 KISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVF 330
+ISG+ + I E A +A + GI QH +G+ + NL+ + GNIGK
Sbjct: 339 RISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGK---- 394
Query: 331 SGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKF----SELWGFEVPSKPGLHYQAI 386
PGA G+C + G + Q V + E+ + +F E +GF P PG A
Sbjct: 395 ----PGA--GIC-PLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIAS 447
Query: 387 FDAMLEGKIKGIYIMGQNPARSL 409
A+ G+ + + MG N A ++
Sbjct: 448 MQAICTGQARALICMGGNFALAM 470
>dbj|BAA15182.1| (D90793) Formate dehydrogenase a chain (EC 1.2.1.2). [Escherichia
coli]
Length = 740
Score = 108 bits (268), Expect = 2e-22
Identities = 97/383 (25%), Positives = 163/383 (42%), Gaps = 54/383 (14%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL +PLK + ++ +SW++A + I + + + P + F S R S E +L
Sbjct: 108 RLTQPLKY--DAVSDCYKPLSWQQAFDEIGARLQSYSD---PNQVEFYTSGRTSNEAAFL 162
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Q AR G+NN +C V + G T +D K +++ G+NP
Sbjct: 163 YQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTN 222
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYP------------------ 222
+P + +A++ GAK+I ++P++ + P+
Sbjct: 223 HPRMLTSL--RALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRI 280
Query: 223 GTDLAIALAMLHVIIKEE----------LYDKDFVAERVNNFDALARAVEKYTPEWA--E 270
G D+A+ M+ ++I+ + L D +F+ FD L R V EW E
Sbjct: 281 GGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDV--LNSEWKDIE 338
Query: 271 KISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVF 330
+ISG+ + I E A +A + GI QH +G+ + NL+ + GNIGK
Sbjct: 339 RISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGK---- 394
Query: 331 SGVIPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKF----SELWGFEVPSKPGLHYQAI 386
PGA G+C + G + Q V + E+ + +F E +GF P PG A
Sbjct: 395 ----PGA--GIC-PLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIAS 447
Query: 387 FDAMLEGKIKGIYIMGQNPARSL 409
A+ G+ + + MG N A ++
Sbjct: 448 MQAICTGQARALICMGGNFALAM 470
>pir||E70916 probable bisC protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2131054|emb|CAB09264.1| (Z95844) bisC [Mycobacterium
tuberculosis]
Length = 766
Score = 108 bits (267), Expect = 2e-22
Identities = 164/677 (24%), Positives = 258/677 (37%), Gaps = 108/677 (15%)
Query: 58 HPDRLKKPLKRVG----------EKGEGKFEEISWEEAIEIIAKKFKEILESHGPEAL-- 105
H R+ P R G +G +F E+SW+E IE++A + + ++ +G EA+
Sbjct: 47 HRSRIANPAVRRGWLQHGPGPSSARGAEEFVEVSWDELIELLASELRRTVDRYGNEAIYG 106
Query: 106 -----AFLGS-ERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTN 159
A G + + L L + + AG + + +F A+T
Sbjct: 107 SSYGWASAGRFHHAQSQVHRFLNMLGGYTASRHSYSAGASEVIFPHIVGAALFEALAETT 166
Query: 160 PFDDIVKSKVILI-WGYNPAATNPVLFGQYFEKAILD-------NGAKLIVVDPVKTETA 211
+D IV +L+ +G P V+ G D G +L+ V P++ + A
Sbjct: 167 TWDVIVDHTALLVAFGGLPVKNTAVMPGGTTAHPDRDYVGRYRARGGRLVSVSPLRDDIA 226
Query: 212 KYAH------IHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALAR------ 259
A L P PGTD+AI L + +V+ E L D+ F+ ++ R
Sbjct: 227 AIAGPLDDRCRWLAPVPGTDVAIMLGLAYVLATESLADRAFLGRYCTGYERFERYLLGLD 286
Query: 260 -AVEKYTPEWAEKISGVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLI 318
+ K TPEWA +SG+ A + + A A + + + + +G T + L
Sbjct: 287 DGIPK-TPEWAAALSGLAAGDLRDLARRMAE-HRTLITTSLSLQRIEHGEQTVWMAATLA 344
Query: 319 AITGNIGKEG-------VFSGV-IPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSEL 370
A+ G IG G +GV P CGL A G N PV E +
Sbjct: 345 AMLGQIGLPGGGFGHGYSSNGVGNPPLACGLPALPQGNNPVSTFIPVAAISELLQ----- 399
Query: 371 WGFEVPSKPGLHYQAIFDAMLE-GKIKGIYIMGQNPARSLANSSKIEEALKRA-FVVVAD 428
+PG A +LE IK +Y G NP N ++ AL R +VV +
Sbjct: 400 -------RPGQRL-AYNGRLLELPDIKCVYWAGGNPFHHHQNLPRLRRALSRVDTIVVHE 451
Query: 429 IFPTETTKYADIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPP-GEAKPDWEIIVMLAKS 487
+ T K+ADIV+P +E+ ++ + + A+ PP A+ D+ LA
Sbjct: 452 QYWTAMAKHADIVVPTTTSFERDDFAASKTNPTLIAMPAMVPPYANARDDYHTFSALAHR 511
Query: 488 IGLGEYFNYS-SVDDVLREINNVIPALKGATPERLAKNLEGCMYPCPDENTETPRLFLKG 546
+G G+ F S + L + + A A+ P T T +L
Sbjct: 512 LGFGKQFTEGRSAREWLEHMYDKWSAELDFPVPSFAEFWRTGRLELP---TRTGLTWLAD 568
Query: 547 F---------PTKSGKAELI--------------------PVEWKPPGEVPDEEYPFWL- 576
F T SG+ E+ P EW G YP L
Sbjct: 569 FRADPAAHPLGTPSGRIEIFSDTVDAFALPDCAGHPTWYEPSEWL--GGPRAARYPLHLI 626
Query: 577 ---TNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVETRRGSL 633
RL Q G S +K ++ R P + I+ DA + GD+VRV RG+
Sbjct: 627 ANQPRTRLHSQLDHGGASMASK-IRGREP---IRIHPDDAAARELTDGDIVRVFNDRGAC 682
Query: 634 VARAEVTENIREGVVAM 650
+A + + +R VV +
Sbjct: 683 LAGVVIDDGLRPKVVQL 699
>gb|AAC44462.1| (U60056) CbbBc [Ralstonia eutropha]
Length = 757
Score = 105 bits (260), Expect = 1e-21
Identities = 154/683 (22%), Positives = 255/683 (36%), Gaps = 98/683 (14%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL PL V ++ F + WE A I EIL P+ + F S R S E YL
Sbjct: 113 RLTHPL--VYDRATDTFRAVEWEAAFARIG----EILRGLSPDQVEFYTSGRASNEAAYL 166
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Q AR GTNN +C V + G T +D ++I+ G+NP
Sbjct: 167 YQLFAREYGTNNFPDCSNMCHEPTSVGLPRSIGIGKGTVSLEDFDTCELIISIGHNPGTN 226
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDPVK-------------TETAKY-----AHIHLQPYP 222
+P + G E + ++V +P++ E A Y A +
Sbjct: 227 HPRMMGTLHEAS--RRKVPILVFNPLRERALERFADPQNMVEMATYGSTRIASSYFLVRA 284
Query: 223 GTDLAIALAMLHVIIKEE-----LYDKDFVAERVNNFDALARAVEKYTPEWA--EKISGV 275
G D A ++ ++ E + D DF+A F+ALA + + EWA EK SG+
Sbjct: 285 GGDAAAIKGVMKALLDLEASQGNVLDHDFIAVHTEGFEALADDLR--STEWADIEKTSGL 342
Query: 276 PASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIP 335
+ + A +A V G+ QH G+ + +L+ + GN GK P
Sbjct: 343 TRADLELVAAAYAKSNATIVTYGMGVTQHNEGTANVRLLCDLLMLRGNFGK--------P 394
Query: 336 GAHCGLCAAVPGVNCAQLPGPVPLNEETA----KKFSELWGFEVPSKPGLHYQAIFDAML 391
GA G+C + G + Q V + E+ + ++ + +GF P+ G AM+
Sbjct: 395 GA--GIC-PLRGHSNVQGNRTVGITEKPSAGFLQRIEDTFGFSPPAGHGHDAVNAMQAMI 451
Query: 392 EGKIKGIYIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYADIVLPAAAWYEKT 451
+GK + ++ +G N A +L + + A+ + D+ + +T
Sbjct: 452 DGKSRALFCLGGNFAVALPDPEQCFPAMGK----------------LDLSVHVGTKLNRT 495
Query: 452 GTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVIP 511
++ + V+ + + + V + S+ + + LR ++
Sbjct: 496 HLLVARETYVLPCLGRTELDVQETGPQSVTVEDSMSMVHASAGKLAPASEFLRSEPAIVA 555
Query: 512 ALKGAT--------------PERLAKNLEGCMYPCPDEN--TETPRLFLKGFP------- 548
+ AT +R+ +E + D N P F P
Sbjct: 556 GIATATLPDSKVPWLELVADYDRIRDLIEKTVPGFEDFNARVRVPGGFRMPLPPTERKWE 615
Query: 549 TKSGKAELIPVEWKPPGEVPDEEYPFWLTNFRLVGQFHTG--TMSNRTKSLKKRWPGPYV 606
T SGKAE + + + L R Q++T M +R + + R +
Sbjct: 616 TSSGKAEFYVFKGLHEDKQVHADDVLRLVTIRSHDQYNTTIYAMDDRYRGVFGR--RDVL 673
Query: 607 MINERDAKRLGIRSGDLVRVETRRGSLVARAE----VTENIREGVVAMPWHWGFNYLTKD 662
+N D G+ GDLV +ET R E + I G VA ++ N L
Sbjct: 674 FMNPADLAARGLEHGDLVDIETIAAGRQLRFEKITAIEYEIAPGSVA-AYYPEANRLVPL 732
Query: 663 DAIDEFSKMPELKTAACRISKVE 685
D IDE S P K+ R+ + E
Sbjct: 733 DYIDEDSGTPSYKSVPVRVVRSE 755
>gb|AAD39508.1| (AF146729) formate dehydrogenase H [Salmonella typhimurium]
Length = 202
Score = 102 bits (253), Expect = 1e-20
Identities = 66/208 (31%), Positives = 110/208 (52%), Gaps = 14/208 (6%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHY----VHP 59
K + VCP+C+ GC++ +V +G + + + N+G LC KG + +
Sbjct: 2 KKVVTVCPYCASGCKINLVVDNG--KIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILT 59
Query: 60 DRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSER-CSLEDN 118
RLK P+ R + GK E +SW+EA+ +A++ I +GP+A+ GS R E N
Sbjct: 60 PRLKTPMIR--RQRGGKLESVSWDEALNYVAERLSAIKAKYGPDAIQTTGSSRGTGNETN 117
Query: 119 YLLQKLARA-LGTNNVEFAGRL-CQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYN 176
Y++QK ARA +GTNNV+ R+ + + G A +N ++I + ++ ++GYN
Sbjct: 118 YVMQKFARAVIGTNNVDCCARVU-HGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYN 176
Query: 177 PAATNPVLFGQYFEKAILDNGAKLIVVD 204
PA ++P++ NGAK+IV D
Sbjct: 177 PADSHPIVANHVINAK--RNGAKIIVCD 202
>pir||A82998 probable oxidoreductase PA5181 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951485|gb|AAG08566.1|AE004931_3
(AE004931) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 773
Score = 102 bits (253), Expect = 1e-20
Identities = 95/375 (25%), Positives = 154/375 (40%), Gaps = 48/375 (12%)
Query: 77 FEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARALGTNNVEFA 136
++ I+W+ A ++A+ + + P+ F S R S E YL Q RA GTNN
Sbjct: 127 YQPITWDAAFALVAEHLRRL---DSPDQAEFYTSGRASNEAAYLYQLFVRAFGTNNFPDC 183
Query: 137 GRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDN 196
+C ++ VA + G + FDD + I I G NP +P + E +
Sbjct: 184 SNMCHEASGVALGRSVGVGKGSVTFDDFEHADAIFILGQNPGTNHPRMLEPLRE--AVKR 241
Query: 197 GAKLIVVDPVKTE-TAKYAH-----------------IHLQPYPGTDLAIALAMLHVII- 237
GA+++ +P+K ++ H +P G D+A + ++
Sbjct: 242 GAQVVCFNPLKERGLERFQHPQNALEMLTNGSSPLNTAFFRPALGGDMAAIRGIAKFLLA 301
Query: 238 ---------KEELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPASLIHEAAVLFA 288
E ++D F+AE + +A ++ E E+ SG+ + I +AA ++
Sbjct: 302 WEREAQAEGSEPVFDHAFIAEHTDGLEAYLAELDATPWEHLERQSGLSLAEIEQAARMYR 361
Query: 289 TGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGAHCGLCAAVPGV 348
V GI QH + I NL + GN+G+ PGA GLC V G
Sbjct: 362 RANRVIVCWAMGITQHHHSVAIIQEIVNLQLLRGNLGR--------PGA--GLC-PVRGH 410
Query: 349 NCAQLPGPVPLNEETAKKFSEL----WGFEVPSKPGLHYQAIFDAMLEGKIKGIYIMGQN 404
+ Q + +NE + +GFEVP G + AML GK K +G N
Sbjct: 411 SNVQGDRTMGINERPPAALLDALERRFGFEVPRHNGHNAVEAIAAMLAGKSKVFIGLGGN 470
Query: 405 PARSLANSSKIEEAL 419
A++ +S + AL
Sbjct: 471 FAQATPDSPRTHAAL 485
>gb|AAG31648.1|AF314590_2 (AF314590) periplasmic nitrate reductase large subunit precursor
[Bradyrhizobium japonicum]
Length = 314
Score = 101 bits (249), Expect = 3e-20
Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C +C GC + + + + D + N+G C KG + DRL +P+ R
Sbjct: 51 CRFCGTGCSVMVATKENRVVATHGDIKAEV-NRGLNCVKGYFLSKIMYGHDRLTQPMLR- 108
Query: 70 GEKGEGKFEE------ISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQK 123
K GK+++ +SW EA +I+ K+KE ++ GP +A GS + ++ + Y K
Sbjct: 109 --KANGKYDKNGDFTPVSWTEAFDIMEVKWKEAMKKRGPNGVAMFGSGQWTIWEGYAASK 166
Query: 124 LARA-LGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATNP 182
L +A TNN++ R C +S + FG +DDI + ++WG N A +P
Sbjct: 167 LFKAGFRTNNIDPNARHCMASAVAGMMRTFGIDEPPGCYDDIEATDAFVLWGSNMAEMHP 226
Query: 183 VLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELY 242
+L+ + ++ + ++ V+ + + A I + P TDL + A+ + II
Sbjct: 227 ILWTRLTDRRLSAPHVRVAVLSTFEHRSFDLADIGMVFKPQTDLYLLNAIANHIINTGRV 286
Query: 243 DKDFVA 248
+KDFVA
Sbjct: 287 NKDFVA 292
>sp|Q10821|YT00_MYCTU HYPOTHETICAL 84.6 KDA PROTEIN RV2900C >gi|7478064|pir||G70926
probable fdhF protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1403421|emb|CAA98338.1| (Z74024) fdhF
[Mycobacterium tuberculosis]
Length = 779
Score = 99.5 bits (244), Expect = 1e-19
Identities = 136/615 (22%), Positives = 238/615 (38%), Gaps = 87/615 (14%)
Query: 61 RLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYL 120
RL P+ V G+ + ISW+ A ++IA++ + P+ F S R S E +
Sbjct: 132 RLAHPM--VLRPGDDHYRPISWDAAYQLIAEQLNGL---DSPDRAVFYTSGRTSNEAAFC 186
Query: 121 LQKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAAT 180
Q L R+ GTNN+ +C S+ A + G + D+ + +I+I G NP
Sbjct: 187 YQLLVRSFGTNNLPDCSNMCHESSGAALTDSIGIGKGSVTIGDVEHADLIVIAGQNPGTN 246
Query: 181 NPVLFGQYFEKAILDNGAKLIVVDP-----------------VKTETAKYAHIHLQPYPG 223
+P + + NGAK+I V+P V A +Q G
Sbjct: 247 HPRMLSVLGKAKA--NGAKIIAVNPLPEAGLIRFKDPQKVNGVVGHGIPIADEFVQIRLG 304
Query: 224 TDLAIALAMLHVIIKEE------LYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPA 277
D+A+ + ++++ E + D+ FV FD R + + +G+
Sbjct: 305 GDMALFAGLGRLLLEAEERVPGSVVDRSFVDNHCAGFDGYRRRTLQVGLDTVMDATGIEL 364
Query: 278 SLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGVIPGA 337
+ + A + + G+ QHA+ T ++N++ + G IGK G +GV P
Sbjct: 365 AQLQRVAAMLMASQRTVICWAMGLTQHAHAVATIGEVTNVLLLRGMIGKPG--AGVCP-- 420
Query: 338 HCGLCAAVPGVNCAQLPGPVPLNEETAKKF----SELWGFEVPSKPGLHYQAIFDAMLEG 393
V G + Q + + E+ ++F +G P G A AM +G
Sbjct: 421 -------VRGHSNVQGDRTMGIWEKMPEQFLAALDREFGITSPRAHGFDTVAAIRAMRDG 473
Query: 394 KIKGIYIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYAD----IVLPAAAWYE 449
++ MG N A + +++ E AL+R + V + ++LP +
Sbjct: 474 RVSVFMGMGGNFASATPDTAVTEAALRRCALTVQVSTKLNRSHLVHGATALILPTLGRTD 533
Query: 450 KTGTVITQNRR------------VMRSFQAVKPPG-EAKPDWEIIVMLAKSI-GLGEYFN 495
+ T+N R V S ++ PP + + + +II LA+++ G G
Sbjct: 534 RD----TRNGRKQLVSVEDSMSMVHLSRGSLHPPSDQVRSEVQIICQLARALFGPGHPVP 589
Query: 496 YSSVDDVLREINNVIPALKGATPE--RLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGK 553
+ D I + I A+ + + +G P P + + F T +GK
Sbjct: 590 WERFADDYDTIRDAIAAVVPGCDDYNHKVRVPDGFQLPHPPRDA-------REFRTSTGK 642
Query: 554 AELI--PVEW--KPPGEVPDEEYPFWLTNFRLVGQFHTGTMSNRTKSLKKRWPGPYVMIN 609
A P++W PPG + L R Q++T + + V IN
Sbjct: 643 ANFAVNPLQWVPVPPGRLV-------LQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFIN 695
Query: 610 ERDAKRLGIRSGDLV 624
D + G+ +GD V
Sbjct: 696 PADIETFGLTAGDRV 710
>pir||E70406 DMSO reductase chain A - Aquifex aeolicus
>gi|2983678|gb|AAC07243.1| (AE000730) DMSO reductase
chain A [Aquifex aeolicus]
Length = 984
Score = 96.3 bits (236), Expect = 1e-18
Identities = 73/244 (29%), Positives = 109/244 (43%), Gaps = 9/244 (3%)
Query: 10 CPWCSVGCRLYIVSVDGYPRKIEFDYNPKTPNKGKLCPKGVSSYQHYVHPDRLKKPLKRV 69
C C+ C + + +G I+ + + NKG LC KG S P RL+KPL RV
Sbjct: 51 CYMCACRCGIEVYVRNGKVTYIKGN-DDHPLNKGVLCAKGSSGIMKEYSPARLRKPLLRV 109
Query: 70 GEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARALG 129
G +G G+F+EI W+EA+EI AK KE + + + F G ++ + + A +G
Sbjct: 110 GPRGSGQFKEIEWDEALEIAAKWIKEAAQKNPSKVAFFTGRDQMQAINGW----FAGQIG 165
Query: 130 TNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGY-NPAATNPVLFGQY 188
T N G C + A G D +K ++ G A+NP G
Sbjct: 166 TLNWAAHGGFCSVNVAAAGLMSVGYSFWEFGDPDFEHTKYFMMIGVAEDHASNPFKLG-- 223
Query: 189 FEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVA 248
+ + G K + V+PV+ A + PGTD A L + HV+ K L D +F+
Sbjct: 224 -IQELKRRGGKFVFVNPVRWSYGAIADEWVPIKPGTDGAFILGLAHVLFKYNLIDWEFLK 282
Query: 249 ERVN 252
E N
Sbjct: 283 EFTN 286
>emb|CAB53372.1| (AJ007744) selenate reductase A [Thauera selenatis]
Length = 918
Score = 94.8 bits (232), Expect = 3e-18
Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 12/246 (4%)
Query: 13 CSVGCRLYIVSVDGYP-RKIEFDYNPKTPNKGKLCPKGVSSYQHYV----HPDRLKKPLK 67
C GC + +G P R+ + P+ P + P+G Y PD LK PLK
Sbjct: 77 CVAGCAWRVFVKNGVPMREEQVSEYPQLPGVPDMNPRGCQKGAVYCSWSKQPDFLKYPLK 136
Query: 68 RVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKLARA 127
RVGE+GE K++ ISW+EA IA K + GP + + ++ + +LA
Sbjct: 137 RVGERGERKWKRISWDEAFTEIADKIIDTTVKRGPGNVC-MPKRPFAVITSAGYSRLANL 195
Query: 128 LGTNNVEFAGRLCQSSNFVARSKIFGGPAQT-NPFDDIVKSKVILIWGYNPAATNPVLFG 186
+G + + + + + PA+T + FDD S +IL+W NP T +
Sbjct: 196 IGAIKPDVSS---MTGDLYPGIQTVRMPARTVSTFDDWFTSDLILMWHKNPIVTR--IPD 250
Query: 187 QYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIKEELYDKDF 246
+F NGA+L+ + P ++ +A +HL GTD +A A+++V+I ++ Y D+
Sbjct: 251 AHFLTEARYNGARLVNISPDYNPSSVHADLHLPVTTGTDSHLAAAIVNVLIADKKYKADY 310
Query: 247 VAERVN 252
+ E+ +
Sbjct: 311 LKEQTD 316
>sp|Q60314|FDHA_METJA PUTATIVE FORMATE DEHYDROGENASE ALPHA CHAIN >gi|2127906|pir||F64300
formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanococcus jannaschii >gi|1498763|gb|AAB97987.1|
(U67459) formate dehydrogenase, alpha subunit
[Methanococcus jannaschii]
Length = 378
Score = 92.1 bits (225), Expect = 2e-17
Identities = 84/305 (27%), Positives = 137/305 (44%), Gaps = 37/305 (12%)
Query: 4 KLIPVVCPWCSVGCRLYIVSVDGYPRKI--EFDYNPKTPNKGKLCPKGVSSYQHYVHPDR 61
K++ +CP CSVGC + ++ D K+ + Y N+GK C G +SY+ H R
Sbjct: 2 KVVHTICPGCSVGCGIDLIVKDD---KVVGTYPYKRHPINEGKNCSNGKNSYKIIYHEKR 58
Query: 62 LKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLL 121
LKKPL K GK E +W+EA+ IA+K L+++ + + F+ S +C+ EDNY L
Sbjct: 59 LKKPL----IKKNGKLVEATWDEALSFIAEK----LKNYNADDITFIASGKCTNEDNYAL 110
Query: 122 QKLARALGTNNVEFAGRLCQSSNFVARSKIFGGPAQTNPFDDIVKSKVILIWGYNPAATN 181
+KL +L + +C S K+ T DDI +K I+I G +
Sbjct: 111 KKLVDSL---KAKIGHCICNS------PKVNYAEVSTT-IDDIENAKNIIIIG--DVFSE 158
Query: 182 PVLFGQYFEKAILDNGAKLIVVDPVKTETAKY---AHIHLQPYPGTDLAIALAMLHVIIK 238
L G+ KA + G+K+ + + + E K + + Y G DL+ +II
Sbjct: 159 HALIGRKVIKA-KEKGSKVTIFNTEEKEILKLNADEFVKVDSYLGVDLSNVDKNTIIIIN 217
Query: 239 EELYDKDFVAERVNNFDALARAVEKYTPEWAEKISGVPA-------SLIHEAAVLFATGG 291
+ + D + + A V K+ + G+PA L+ + L+ G
Sbjct: 218 APV-NVDEIIKTAKENKAKVLPVAKHCNTVGATLIGIPALNKDEYFELLKNSKFLYIMGE 276
Query: 292 NATVV 296
N +V
Sbjct: 277 NPALV 281
Score = 87.8 bits (214), Expect = 4e-16
Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 9/129 (6%)
Query: 379 PGLHYQAIFDAMLEGKIKGIYIMGQNPARSLANSSKIEEALKRAFVVVADIFPTETTKYA 438
P L+ F+ + K +YIMG+NPA L + ++ F+VV DI TET + A
Sbjct: 254 PALNKDEYFELLKNSKF--LYIMGENPA--LVDKDVLKNV---EFLVVQDIIMTETAEMA 306
Query: 439 DIVLPAAAWYEKTGTVITQNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSS 498
D+VLP+ W EK GT I ++R+ + +AV PPG+A DW II LA+ LG ++S
Sbjct: 307 DVVLPSTCWAEKDGTFINTDKRIQKINKAVNPPGDAMDDWLIIKSLAEK--LGSDLGFNS 364
Query: 499 VDDVLREIN 507
++D+ ++I+
Sbjct: 365 LEDIQQDIH 373
>emb|CAB89111.1| (AJ277440) nitrate reductase subunit 1 [Haloarcula marismortui
subsp. marismortui]
Length = 952
Score = 69.9 bits (168), Expect = 9e-11
Identities = 70/254 (27%), Positives = 116/254 (45%), Gaps = 25/254 (9%)
Query: 13 CSVGCRLYIVSVDGYPRKIE-------FDYNPKTPNKGKLCPKGVSSYQHYVHPD-RLKK 64
C+ C + DG + E FD + PN + C KG + Y YV+ D R+
Sbjct: 83 CTGSCSWNVYVKDGQVWREEQAGDYPTFDESLPDPNP-RGCQKG-ACYTDYVNADQRVLH 140
Query: 65 PLKRVGEKGEGKFEEISWEEAIEIIAKKFKEILESHGPEALAFLGSERCSLEDNYLLQKL 124
PL+R GE+GEG++E ISW+EA+ IA + +++ +A++ + +
Sbjct: 141 PLRRTGERGEGQWERISWDEALTEIADHVIDEVQAGRYDAIS-------GFTPIPAMSPV 193
Query: 125 ARALGTNNVEFAGRLCQS-----SNFVARSKIFGGPAQTNPFD-DIVKSKVILIWGYNPA 178
+ A G+ V G + S S+ I G N D + I+ WG N
Sbjct: 194 SFASGSRLVNLLGGVSHSFYDWYSDLPPGQPITWGTQTDNAESADWHNADYIIAWGSNIN 253
Query: 179 ATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKYAHIHLQPYPGTDLAIALAMLHVIIK 238
T + +YF A + GAK + + ++TA + L P+ G+D A+AL M I+
Sbjct: 254 VTR-IPDAKYFLDAGYE-GAKRVGIFTDYSQTAIHTDEWLSPHGGSDTALALGMAQTIVD 311
Query: 239 EELYDKDFVAERVN 252
E L+D+ + E+ +
Sbjct: 312 EGLHDEAHLKEQTD 325
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274569954
Number of Sequences: 2977
Number of extensions: 12329044
Number of successful extensions: 27785
Number of sequences better than 1.0e-10: 145
Number of HSP's better than 0.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 26824
Number of HSP's gapped (non-prelim): 321
length of query: 686
length of database: 189,106,746
effective HSP length: 56
effective length of query: 630
effective length of database: 155,591,474
effective search space: 98022628620
effective search space used: 98022628620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)