BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1390 (fdhB-like) DE:FORMATE DEHYDROGENASE IRON-SULFUR
SUBUNIT related protein
(164 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75061 formate dehydrogenase iron-sulfur chain related prot... 355 2e-97
sp|P37601|PHSB_SALTY THIOSULFATE REDUCTASE ELECTRON TRANSPORT PR... 134 5e-31
gb|AAD00534.1| (U82372) putative molybdopterin oxidoreductase ir... 119 2e-26
sp|P32708|NRFC_ECOLI NRFC PROTEIN >gi|2144352|pir||C57987 nrfC p... 116 1e-25
gb|AAC43166.1| (U00006) matches PS00198: 4Fe-4S ferredoxins, iro... 115 3e-25
sp|P18776|DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 115 5e-25
pir||S03786 dimethylsulfoxide reductase (EC 1.8.-.-) chain B - E... 115 5e-25
gi|11498801 molybdopterin oxidoreductase, iron-sulfur binding su... 114 8e-25
sp|P31076|PSRB_WOLSU POLYSULFIDE REDUCTASE CHAIN B (SULFUR REDUC... 113 1e-24
gb|AAA68432.1| (L31538) iron-sulfur protein [Salmonella typhimur... 112 2e-24
pir||F70306 dimethylsulfoxide reductase chain B - Aquifex aeolic... 111 7e-24
pir||G64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain B1, a... 109 3e-23
gi|11499962 molybdopterin oxidoreductase, iron-sulfur binding su... 108 4e-23
pir||G64924 nrfC protein homolog b1671 - Escherichia coli >gi|15... 108 4e-23
pir||D70406 DMSO reductase chain B - Aquifex aeolicus >gi|298367... 107 1e-22
pir||H70389 formate dehydrogenase beta subunit - Aquifex aeolicu... 106 1e-22
sp|P45015|NRFC_HAEIN NRFC PROTEIN HOMOLOG >gi|1074098|pir||A6418... 105 4e-22
sp|P27273|FDHB_WOLSU FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT >... 103 1e-21
emb|CAB37414.1| (AJ224978) tetrathionate reductase subunit B (Tt... 103 1e-21
pir||G65072 hypothetical protein b2887 - Escherichia coli (strai... 103 1e-21
sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS I... 103 1e-21
sp|P24184|FDNH_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, I... 102 2e-21
gb|AAF91267.1|AF230199_9 (AF230199) pyruvate oxidoreductase cyst... 102 2e-21
gb|AAD37318.1|AF135170_9 (AF135170) dimethyl sulfoxide reductase... 102 2e-21
dbj|BAA74792.1| (AB017192) nitrate reductase electron transfer s... 102 3e-21
gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding... 101 4e-21
pir||B81298 formate dehydrogenase (EC 1.2.1.2) iron-sulfur chain... 101 8e-21
sp|P31894|COOF_RHORU IRON-SULFUR PROTEIN >gi|282185|pir||B42957 ... 100 1e-20
gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD... 100 2e-20
sp|P44450|FDXH_HAEIN FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT ... 100 2e-20
sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG p... 100 2e-20
dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number ... 100 2e-20
sp|P56256|YSAA_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YSAA >g... 100 2e-20
sp|P45003|DMSB_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 100 2e-20
pir||F83044 nitrate-inducible formate dehydrogenase, beta subuni... 99 3e-20
gb|AAB06234.1| (U26665) dimethyl sulphoxide reductase subunit B ... 99 3e-20
pir||F65072 hypothetical protein b2886 - Escherichia coli (strai... 98 7e-20
pir||D69096 formate hydrogenlyase, iron-sulfur subunit 2 - Metha... 98 7e-20
sp|Q46819|YGFS_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YGFS 98 7e-20
pir||G72495 probable polysulfide reductase APE2605 - Aeropyrum p... 98 9e-20
pir||H82191 formate dehydrogenase, iron-sulfur chain VC1512 [imp... 98 9e-20
pir||E72382 iron-sulfur cluster-binding protein - Thermotoga mar... 97 1e-19
pir||H75154 electron transport protein PAB2084 - Pyrococcus abys... 97 1e-19
gb|AAG19285.1| (AE005024) molybdopterin oxidoreductase; HmoA [Ha... 96 3e-19
sp|P32175|FDOH_ECOLI FORMATE DEHYDROGENASE-O, IRON-SULFUR SUBUNI... 95 4e-19
sp|P30132|HYDN_ECOLI ELECTRON TRANSPORT PROTEIN HYDN >gi|7432696... 95 4e-19
sp|Q57619|FER8_METJA PUTATIVE FERREDOXIN MJ0155 >gi|2127909|pir|... 93 2e-18
pir||C69099 formate hydrogenlyase, iron-sulfur subunit I - Metha... 93 2e-18
gi|11497774 molybdopterin oxidoreductase, iron-sulfur binding su... 92 3e-18
sp|P33389|HMC2_DESVH 40.1 KD PROTEIN IN HMC OPERON (ORF 2) >gi|5... 92 4e-18
pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jan... 92 4e-18
gb|AAB98252.1| (U67482) carbon monoxide dehydrogenase, iron sulf... 92 4e-18
gi|11498555 carbon monoxide dehydrogenase, iron sulfur subunit (... 92 5e-18
gb|AAF91266.1|AF230199_8 (AF230199) pyruvate oxidoreductase cyst... 92 5e-18
pir||T50875 hypothetical electron transfer protein [imported] - ... 90 2e-17
gi|11497792 molybdopterin oxidoreductase, iron-sulfur binding su... 89 3e-17
gb|AAG13084.1| (U84760) DsrO [Allochromatium vinosum] 87 2e-16
sp|P16428|HYCB_ECOLI FORMATE HYDROGENLYASE SUBUNIT 2 (FHL SUBUNI... 86 2e-16
gb|AAG29808.1|AF249899_1 (AF249899) carbon monoxide dehydrogenas... 86 3e-16
pir||S08620 probable hydrogenase 3 protein 2 - Escherichia coli ... 85 6e-16
pir||E71078 hypothetical protein PH0893 - Pyrococcus horikoshii ... 83 2e-15
sp|P37179|HYBA_ECOLI HYDROGENASE-2 OPERON PROTEIN HYBA PRECURSOR... 82 4e-15
pir||A55516 hybA protein - Escherichia coli 82 4e-15
sp|Q57712|Y264_METJA HYPOTHETICAL PROTEIN MJ0264 >gi|2127910|pir... 82 4e-15
pir||B69099 formate hydrogenlyase, iron-sulfur subunit 2 - Metha... 82 5e-15
gb|AAK41790.1| Molybdopterin oxidoreductase, iron-sulfur binding... 80 2e-14
gb|AAK42907.1| Oxydoreductase, putative [Sulfolobus solfataricus] 80 2e-14
sp|P23481|HYFA_ECOLI HYDROGENASE-4 COMPONENT A >gi|538761|pir||C... 76 2e-13
pir||H65023 hypothetical 22.2K protein (bcp 3'region) - Escheric... 76 2e-13
sp|P20925|YFRA_PROVU FRD OPERON PROBABLE IRON-SULFUR PROTEIN A >... 75 4e-13
pir||B64925 probable iron-sulfur protein b1674 - Escherichia col... 75 4e-13
gi|11498110 molybdopterin oxidoreductase, iron-sulfur binding su... 74 9e-13
gb|AAG23607.1|AF244658_1 (AF244658) carbon monoxide dehydrogenas... 74 1e-12
>pir||A75061 formate dehydrogenase iron-sulfur chain related protein PAB1390 -
Pyrococcus abyssi (strain Orsay)
>gi|5458895|emb|CAB50382.1| (AJ248287) FORMATE
DEHYDROGENASE IRON-SULFUR SUBUNIT related protein
[Pyrococcus abyssi]
Length = 164
Score = 355 bits (901), Expect = 2e-97
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPT 60
MSKKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPT
Sbjct: 1 MSKKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPT 60
Query: 61 GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPAC 120
GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPAC
Sbjct: 61 GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPAC 120
Query: 121 VSACPTDALKYGDINEILWKREGRVVLNLKEARDKSVGKLAYLL 164
VSACPTDALKYGDINEILWKREGRVVLNLKEARDKSVGKLAYLL
Sbjct: 121 VSACPTDALKYGDINEILWKREGRVVLNLKEARDKSVGKLAYLL 164
>sp|P37601|PHSB_SALTY THIOSULFATE REDUCTASE ELECTRON TRANSPORT PROTEIN PHSB
>gi|2117581|pir||B57143 thiosulfate--dithiol
sulfurtransferase (EC 2.8.1.5) phsB chain - Salmonella
typhimurium >gi|755677|gb|AAC36935.1| (L32188)
thiosulfate reductase [Salmonella typhimurium]
Length = 192
Score = 134 bits (335), Expect = 5e-31
Identities = 67/143 (46%), Positives = 88/143 (60%), Gaps = 14/143 (9%)
Query: 8 DYRRCIACKACEVAC----EMEHGEARIRV-FEFPDLTS--------IPFNCRHCERAPC 54
D +RCI C+AC VAC ++ G +R++V P+ S + +C+HCE APC
Sbjct: 13 DEKRCIGCQACTVACKVLNDVPEGFSRVQVQIRAPEQASNALTHFQFVRVSCQHCENAPC 72
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRR-A 113
+ VCPTGA YRD + V D +CIGC C ACPF V L+ + DKC+ CAD R A
Sbjct: 73 VSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFHVRYLNPQTGVADKCNFCADTRLA 132
Query: 114 QGKLPACVSACPTDALKYGDINE 136
G+ PACVS CPTDALK+G ++E
Sbjct: 133 AGQSPACVSVCPTDALKFGRLDE 155
>gb|AAD00534.1| (U82372) putative molybdopterin oxidoreductase iron-sulfur binding
subunit [Pyrobaculum aerophilum]
Length = 214
Score = 119 bits (295), Expect = 2e-26
Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 5 IFLDYRRCIACKACEVACEMEHGEARIRVFEF---------PDLTSIPFNCRHCERAPCL 55
+++D +C C AC VAC E+ I VF + +P C HCE APC+
Sbjct: 37 MYIDVSKCYGCYACMVACAAENN-VPIGVFRTWIERHVTKGGTVIFVPKQCNHCENAPCV 95
Query: 56 EVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQG 115
+ CPTGA Y+ D V + CIGC C ACP+G + ++DKC C+ R QG
Sbjct: 96 KPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGARFFNPVKGVVDKCTFCSHRIYQG 155
Query: 116 KLPACVSACPTDALKYGDINE 136
KLPACV CPT A +GD+N+
Sbjct: 156 KLPACVETCPTGARVFGDLND 176
>sp|P32708|NRFC_ECOLI NRFC PROTEIN >gi|2144352|pir||C57987 nrfC protein - Escherichia
coli >gi|404304|emb|CAA51043.1| (X72298) member of cooF
family containing 4Fe /4S iron sulfur centre
[Escherichia coli] >gi|2367345|gb|AAC77042.1| (AE000480)
formate-dependent nitrite reductase; Fe-S centers
[Escherichia coli K12]
Length = 223
Score = 116 bits (289), Expect = 1e-25
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 8 DYRRCIACKACEVAC----EMEHGEARIRVF------EFPDLTSIPF--NCRHCERAPCL 55
D CI C AC AC ++ G +R+ + EFPD+ F +C+HC+ APC+
Sbjct: 42 DESLCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCV 101
Query: 56 EVCPTGALYRDCDNAVA-FDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQ 114
+VCPTGA +RD + + +P C+GC C ACP+ V + K DKCD C Q
Sbjct: 102 DVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLQ 161
Query: 115 -GKLPACVSACPTDALKYGDINE 136
GKLPACV ACPT AL +G++++
Sbjct: 162 AGKLPACVEACPTKALTFGNLDD 184
>gb|AAC43166.1| (U00006) matches PS00198: 4Fe-4S ferredoxins, iron-sulfur binding
region signature, and PS00178: Aminoacyl-transfer RNA
synthetases class-I signature [Escherichia coli]
Length = 223
Score = 115 bits (285), Expect = 3e-25
Identities = 58/143 (40%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Query: 8 DYRRCIACKACEVAC----EMEHGEARIRVF------EFPDLTSIPF--NCRHCERAPCL 55
D CI C AC AC ++ +R+ + EFPD+ F +C+HC+ APC+
Sbjct: 42 DESLCIGCTACMDACREVNKVPEASSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCV 101
Query: 56 EVCPTGALYRDCDNAVA-FDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQ 114
+VCPTGA +RD + + +P C+GC C ACP+ V + K DKCD C Q
Sbjct: 102 DVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNLQ 161
Query: 115 -GKLPACVSACPTDALKYGDINE 136
GKLPACV ACPT AL +G++++
Sbjct: 162 AGKLPACVEACPTKALTFGNLDD 184
>sp|P18776|DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN B (DMSO REDUCTASE
IRON-SULFUR SUBUNIT) >gi|7432713|pir||F64828 anaerobic
dimethylsulfoxide reductase (EC 1.-.-.-) chain B -
Escherichia coli >gi|1651422|dbj|BAA35627.1| (D90727)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B.
[Escherichia coli] >gi|1787122|gb|AAC73981.1| (AE000191)
anaerobic dimethyl sulfoxide reductase subunit B
[Escherichia coli K12]
Length = 205
Score = 115 bits (284), Expect = 5e-25
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Query: 6 FLDYRRCIACKACEVAC----EMEHGEARIRVFEFPD---------------LTSIPFNC 46
F+D RC CK CE+AC ++ + R++E+ + +C
Sbjct: 8 FIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISC 67
Query: 47 RHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCD 106
HCE C +VCP+GA+++ D V D CIGC C +ACP+G P+ +E M KCD
Sbjct: 68 NHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCD 127
Query: 107 LCADRRAQGKLPACVSACPTDALKYGDINEI 137
C DR A+GK P CV +CP AL +G I+E+
Sbjct: 128 GCYDRVAEGKKPICVESCPLRALDFGPIDEL 158
>pir||S03786 dimethylsulfoxide reductase (EC 1.8.-.-) chain B - Escherichia coli
>gi|145756|gb|AAA83844.1| (J03412) anaerobic dimethyl
sulfoxide reductase [Escherichia coli]
Length = 207
Score = 115 bits (284), Expect = 5e-25
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Query: 6 FLDYRRCIACKACEVAC----EMEHGEARIRVFEFPD---------------LTSIPFNC 46
F+D RC CK CE+AC ++ + R++E+ + +C
Sbjct: 8 FIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISC 67
Query: 47 RHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCD 106
HCE C +VCP+GA+++ D V D CIGC C +ACP+G P+ +E M KCD
Sbjct: 68 NHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCD 127
Query: 107 LCADRRAQGKLPACVSACPTDALKYGDINEI 137
C DR A+GK P CV +CP AL +G I+E+
Sbjct: 128 GCYDRVAEGKKPICVESCPLRALDFGPIDEL 158
>gi|11498801 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432699|pir||A69400
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2649382|gb|AAB90042.1| (AE001021) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 165
Score = 114 bits (282), Expect = 8e-25
Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 16/159 (10%)
Query: 1 MSKKIFL-DYRRCIACKACEVACEMEHGE------ARIRVF-EFPDLTSIPFN------- 45
+SK F+ D R+CI C AC +AC++EH RIRVF + P +T
Sbjct: 4 LSKLTFVHDRRKCIGCYACVIACKVEHSSENFDDPGRIRVFHDGPRITGEKVQQHFKVVV 63
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKC 105
CRHC APC++ CPTGAL + D D CIGC +C CPFG P+L + K+
Sbjct: 64 CRHCLSAPCVDECPTGALRKSEDGMTVLDLDLCIGCKICMEVCPFGAPQLGDDGKVR-IY 122
Query: 106 DLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGR 144
DLC R +GK PACVSAC L+ + ++ K + R
Sbjct: 123 DLCMPRIEEGKKPACVSACVAQCLQVKSVEDLKKKSKTR 161
>sp|P31076|PSRB_WOLSU POLYSULFIDE REDUCTASE CHAIN B (SULFUR REDUCTASE CHAIN B)
>gi|79394|pir||S23458 polysulfide reductase (EC 1.-.-.-)
iron-sulfur protein psrB - Wolinella succinogenes
>gi|48527|emb|CAA46177.1| (X65042) psrB [Wolinella
succinogenes]
Length = 191
Score = 113 bits (280), Expect = 1e-24
Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 18/153 (11%)
Query: 1 MSKKIFL--DYRRCIACKACEVACEMEH----GEARIRVF-----EFPDLTSIPFN---- 45
M+KK + D CI C+AC +AC E+ R++V+ + PD T + FN
Sbjct: 1 MAKKYGMIHDENLCIGCQACNIACRSENKIPDSVYRLQVWVQGPKKLPDGT-LSFNYHRQ 59
Query: 46 -CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDK 104
C CE PC+ VCPT A Y + D V+ + C+GCL C ACP+ +D K DK
Sbjct: 60 SCVQCENTPCVSVCPTKASYVNEDGIVSVNVDLCVGCLYCIAACPYQARYVDPVTKAPDK 119
Query: 105 CDLCADRR-AQGKLPACVSACPTDALKYGDINE 136
C+ C D R A+G+ PACV+ CPTDAL +GD+++
Sbjct: 120 CNFCKDTRLARGEEPACVTVCPTDALTFGDMSD 152
>gb|AAA68432.1| (L31538) iron-sulfur protein [Salmonella typhimurium]
Length = 198
Score = 112 bits (278), Expect = 2e-24
Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 14/143 (9%)
Query: 8 DYRRCIACKACEVAC----EMEHGEARIRV-FEFPDLTS--------IPFNCRHCERAPC 54
D +RCI C+AC VAC ++ G +R++V P+ S + +C+HCE APC
Sbjct: 19 DEKRCIGCQACTVACKVLNDVPEGFSRVQVQIRAPEQASNALTHFQFVRVSCQHCENAPC 78
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRR-A 113
+ VC ++ D +CIGC C ACPF V L+ + DKC+ CAD R A
Sbjct: 79 VSVCLPERHIVMKTGSLQVDKSRCIGCDYCVAACPFHVRYLNPQTGVADKCNFCADTRLA 138
Query: 114 QGKLPACVSACPTDALKYGDINE 136
G+ PACVS CPTDALK+G ++E
Sbjct: 139 AGQSPACVSVCPTDALKFGRLDE 161
>pir||F70306 dimethylsulfoxide reductase chain B - Aquifex aeolicus
>gi|2982814|gb|AAC06437.1| (AE000672) dimethylsulfoxide
reductase chain B [Aquifex aeolicus]
Length = 170
Score = 111 bits (274), Expect = 7e-24
Identities = 55/145 (37%), Positives = 79/145 (53%), Gaps = 12/145 (8%)
Query: 5 IFLDYRRCIACKACEVACEMEHGEARI-----RVF------EFPDLTSIPFNCRHCERAP 53
+ +D RCI C +CEVAC E G + +VF E P P NC HC+ AP
Sbjct: 6 MLIDLDRCIGCLSCEVACVQEKGLESLYIRPMKVFRVEGISEEPGAFYYPMNCFHCDPAP 65
Query: 54 CLEVCPTGALY-RDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRR 112
C+ CPT A+ R+ D V + CIGC C +ACP+G + A + ++KCD C R
Sbjct: 66 CVVACPTSAMRKREKDGIVYVEQTLCIGCKACIIACPYGAITFNPATQKVEKCDYCYKRV 125
Query: 113 AQGKLPACVSACPTDALKYGDINEI 137
+G LP+CV C T+ L + +++E+
Sbjct: 126 DKGLLPSCVEKCVTNCLYFVEVDEV 150
>pir||G64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain B1, anaerobic -
Escherichia coli >gi|1742612|dbj|BAA15313.1| (D90801)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B
[Escherichia coli] >gi|1742623|dbj|BAA15323.1| (D90802)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B
[Escherichia coli] >gi|1787872|gb|AAC74661.1| (AE000254)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 205
Score = 109 bits (269), Expect = 3e-23
Identities = 55/158 (34%), Positives = 78/158 (48%), Gaps = 27/158 (17%)
Query: 6 FLDYRRCIACKACEVAC-----------------------EMEHGEARIRVFEFPDLTSI 42
F+D RC CK CE+AC + ++G VF + +
Sbjct: 8 FIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGVWHQNVFAY----YL 63
Query: 43 PFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIM 102
+C HC+ C +VCP+GA+++ D V D CIGC C +ACP+G P+ + M
Sbjct: 64 SISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHM 123
Query: 103 DKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWK 140
KCD C R A+GK P CV +CP AL++G I E+ K
Sbjct: 124 TKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQK 161
>gi|11499962 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432700|pir||A69548
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650708|gb|AAB91278.1| (AE001111) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 182
Score = 108 bits (267), Expect = 4e-23
Identities = 52/142 (36%), Positives = 76/142 (52%), Gaps = 12/142 (8%)
Query: 7 LDYRRCIACKACEVACEMEHGEA----------RIRVFEFPDLTSIPFN--CRHCERAPC 54
+D +C+ C+AC AC E+ R+ +FP+++++ + C+HCE C
Sbjct: 8 IDLEKCLGCEACVTACIEENNVPYETGLRTQVHRVVTGKFPNVSTMYMHRICQHCEHPGC 67
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQ 114
+ VCPTGA Y + D V D CIGC C VACP+ + DKC C R +
Sbjct: 68 VHVCPTGASYVNEDGIVLIDYDLCIGCKYCMVACPYLARYIHPERHTPDKCTFCVHRVKE 127
Query: 115 GKLPACVSACPTDALKYGDINE 136
GKLPACV CP +A +GD+++
Sbjct: 128 GKLPACVETCPANARIFGDLDD 149
>pir||G64924 nrfC protein homolog b1671 - Escherichia coli
>gi|1549282|gb|AAB47947.1| (U68703) hypothetical protein
[Escherichia coli] >gi|1742751|dbj|BAA15443.1| (D90810)
Thiosulfate reductase electron transport protein PhsB.
[Escherichia coli] >gi|1787960|gb|AAC74741.1| (AE000262)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 239
Score = 108 bits (267), Expect = 4e-23
Identities = 58/138 (42%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
Query: 8 DYRRCIACKACEVACEMEH---------GEARIRVFEFPDLTSIPF---NCRHCERAPCL 55
D RC C C AC + A I V + + T F +C+HCE APC+
Sbjct: 59 DESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCI 118
Query: 56 EVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRR-AQ 114
+VCPTGA +RD V + +CIGC C ACP+ V L+ K+ DKCD CA+ R A+
Sbjct: 119 DVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAK 178
Query: 115 GKLPACVSACPTDALKYG 132
G P CVSACP AL +G
Sbjct: 179 GFPPICVSACPEHALIFG 196
>pir||D70406 DMSO reductase chain B - Aquifex aeolicus
>gi|2983679|gb|AAC07244.1| (AE000730) DMSO reductase
chain B [Aquifex aeolicus]
Length = 254
Score = 107 bits (264), Expect = 1e-22
Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 33/165 (20%)
Query: 5 IFLDYRRCIACKACEVACEMEHGEARI-------------------RVF-----EFPD-- 38
+ +D C+ C AC C+ + +A R+F EFP+
Sbjct: 6 LVIDLNTCVGCHACATNCKEWNTQAAFGPLSDYDPYGREASGVWYNRIFTYETGEFPETQ 65
Query: 39 LTSIPFNCRHCERAPCLEVCPTGALY-RDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE 97
+ +P +C HC+ APC+ VCPTGA Y R+ D V + CIGC +C+ ACP+G + DE
Sbjct: 66 VFHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWACPYGCREFDE 125
Query: 98 ANKIMDKCDLCADR------RAQGKLPACVSACPTDALKYGDINE 136
A+K+M KC LC DR + + PACV CP A +GDI +
Sbjct: 126 ADKVMKKCTLCIDRIYDETLPPEHRQPACVLTCPARARFFGDIED 170
>pir||H70389 formate dehydrogenase beta subunit - Aquifex aeolicus
>gi|2983533|gb|AAC07108.1| (AE000720) formate
dehydrogenase beta subunit [Aquifex aeolicus]
Length = 303
Score = 106 bits (263), Expect = 1e-22
Identities = 65/182 (35%), Positives = 86/182 (46%), Gaps = 37/182 (20%)
Query: 5 IFLDYRRCIACKACEVACEMEHG------------EARIRVFE-FPDLTSIPF------- 44
I +D CI CKACE AC+ H + +I ++ PDL F
Sbjct: 35 ILVDVSSCIGCKACEAACQQWHDTTPPILSPEEVIKRKIAGYQTHPDLLPETFMLMKFKE 94
Query: 45 --------------NCRHCERAPCLEVCPT-GALYRDCDNAVAFDPLKCIGCLMCAVACP 89
C HC CL CP+ GA+ + + V FD KCIGC MC V CP
Sbjct: 95 GETSRGFTWFITKYQCMHCREPGCLIACPSPGAVIQYQNGVVDFDHSKCIGCKMCLVGCP 154
Query: 90 FGVPKLDEANKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVVLNL 149
F +P+ D+ NK KC+ C DR + G PACV CPT+ L +G E + +R ++V L
Sbjct: 155 FDIPRYDKNNKPW-KCNFCIDRVSAGLEPACVKTCPTNCLSFG-FKEDMIERGKKIVERL 212
Query: 150 KE 151
KE
Sbjct: 213 KE 214
>sp|P45015|NRFC_HAEIN NRFC PROTEIN HOMOLOG >gi|1074098|pir||A64181 nrfC protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574621|gb|AAC22725.1| (U32787) nitrite reductase,
Fe-S protein (nrfC) [Haemophilus influenzae Rd]
Length = 225
Score = 105 bits (259), Expect = 4e-22
Identities = 57/144 (39%), Positives = 78/144 (53%), Gaps = 16/144 (11%)
Query: 8 DYRRCIACKACEVAC----EMEHGEARIRVF------EFPDLTSIPF--NCRHCERAPCL 55
D CI C AC +C ++ G +R+ + EFP+ F +C+HC APC+
Sbjct: 44 DENACIGCTACMDSCRDVNQVPEGVSRLEILRSEPYGEFPNQEYEFFRQSCQHCTNAPCV 103
Query: 56 EVCPTGALYRDCDNAVAFDPLK--CIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRR- 112
VCPTGA + D + + D K CIGC C CP+ V + ++ DKC+ C D
Sbjct: 104 AVCPTGASFIDKETGIV-DVHKDLCIGCQYCIAVCPYRVRFIHPIHRTADKCNFCRDTNL 162
Query: 113 AQGKLPACVSACPTDALKYGDINE 136
A GK PACV ACPT AL +GD+N+
Sbjct: 163 ANGKQPACVEACPTKALTFGDMND 186
>sp|P27273|FDHB_WOLSU FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT >gi|97331|pir||S18214
formate dehydrogenase (EC 1.2.1.2) chain B - Wolinella
succinogenes >gi|48508|emb|CAA37990.1| (X54057) formate
dehydrogenase [Wolinella succinogenes]
Length = 200
Score = 103 bits (255), Expect = 1e-21
Identities = 60/165 (36%), Positives = 74/165 (44%), Gaps = 31/165 (18%)
Query: 4 KIFLDYRRCIACKACEVACEMEH----GEARIRVFEFPD-----LTSIPFNCRHCERAPC 54
K + D RCI C C+VAC+ H G R RV + S+ C HC APC
Sbjct: 8 KFYCDEARCIDCHGCDVACKEAHHLPVGVNRRRVVTLNEGLVGKEKSLSIACMHCSDAPC 67
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKI-----MDKCDLCA 109
+VCP Y D V D KCIGC C ACPFG P+ ++ MDKC CA
Sbjct: 68 AQVCPVDCFYVRADGIVLHDKEKCIGCGYCLYACPFGAPQFPKSGIFGSRGPMDKCTFCA 127
Query: 110 -----------------DRRAQGKLPACVSACPTDALKYGDINEI 137
+R A+GK+P C + C T AL GD + I
Sbjct: 128 GGPEETHSEKEYKLYGQNRIAEGKVPVCAAMCSTKALLAGDSDSI 172
>emb|CAB37414.1| (AJ224978) tetrathionate reductase subunit B (TtrB) [Salmonella
typhimurium] >gi|11139591|gb|AAG31757.1| (AF282268)
tetrathionate reductase subunit B [Salmonella enterica
serovar Typhimurium]
Length = 250
Score = 103 bits (255), Expect = 1e-21
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 17/163 (10%)
Query: 5 IFLDYRRCIACKACEVACEMEH----GEARIRVFEFP-------DLTSI--PFNCRHCER 51
+ +D RRCI C++C V+C +E+ G R V ++ ++T++ P C HC+
Sbjct: 52 MLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVTNVLLPRLCNHCDN 111
Query: 52 APCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADR 111
PC+ VCP A ++ D V D +C+GC C ACP+ ++ + DKC C R
Sbjct: 112 PPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADKCTFCVHR 171
Query: 112 RAQGKLPACVSACPTDALKYGDINEILWKREGRVVLNLKEARD 154
G LPACV +C A GDI + R+ L + RD
Sbjct: 172 LEAGLLPACVESCVGGARIIGDIKD----PHSRIATMLHQHRD 210
>pir||G65072 hypothetical protein b2887 - Escherichia coli (strain K-12)
>gi|887837|gb|AAA83068.1| (U28375) ORF_f644 [Escherichia
coli] >gi|1789253|gb|AAC75925.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 644
Score = 103 bits (254), Expect = 1e-21
Identities = 58/144 (40%), Positives = 75/144 (51%), Gaps = 17/144 (11%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA-----------RIRVFEFPDLTSIPFNCRHC 49
M+K I + CI C ACE+AC + H + RI V + P C HC
Sbjct: 6 MNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAAN-PVACHHC 64
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCA 109
APC+ CP AL D+ V D KCIGC CA+ACPFGV ++ + I KCDLC
Sbjct: 65 NNAPCVTACPVNALTFQSDS-VQLDEQKCIGCKRCAIACPFGV--VEMVDTIAQKCDLC- 120
Query: 110 DRRAQGKLPACVSACPTDALKYGD 133
++R+ G AC+ CPT AL+ D
Sbjct: 121 NQRSSG-TQACIEVCPTQALRLMD 143
>sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
Length = 639
Score = 103 bits (254), Expect = 1e-21
Identities = 58/144 (40%), Positives = 75/144 (51%), Gaps = 17/144 (11%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA-----------RIRVFEFPDLTSIPFNCRHC 49
M+K I + CI C ACE+AC + H + RI V + P C HC
Sbjct: 1 MNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAAN-PVACHHC 59
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCA 109
APC+ CP AL D+ V D KCIGC CA+ACPFGV ++ + I KCDLC
Sbjct: 60 NNAPCVTACPVNALTFQSDS-VQLDEQKCIGCKRCAIACPFGV--VEMVDTIAQKCDLC- 115
Query: 110 DRRAQGKLPACVSACPTDALKYGD 133
++R+ G AC+ CPT AL+ D
Sbjct: 116 NQRSSG-TQACIEVCPTQALRLMD 138
>sp|P24184|FDNH_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT
(FORMATE DEHYDROGENASE-N BETA SUBUNIT) (FDH-N BETA
SUBUNIT) (ANAEROBIC FORMATE DEHYDROGENASE IRON-SULFUR
SUBUNIT) >gi|7451556|pir||JS0629 formate dehydrogenase
(EC 1.2.1.2) N (nitrate-inducible) beta chain -
Escherichia coli >gi|1742408|dbj|BAA15124.1| (D90788)
Formate dehydrogenase (EC 1.2.1.2), nitrate-inducible,
beta chain [Escherichia coli]
>gi|1742418|dbj|BAA15133.1| (D90789) Formate
dehydrogenase (EC 1.2.1.2), nitrate-inducible, beta
chain [Escherichia coli] >gi|1787749|gb|AAD13439.1|
(AE000244) formate dehydrogenase-N, nitrate-inducible,
iron-sulfur beta subunit [Escherichia coli K12]
Length = 294
Score = 102 bits (253), Expect = 2e-21
Identities = 59/168 (35%), Positives = 84/168 (49%), Gaps = 30/168 (17%)
Query: 7 LDYRRCIACKACEVACEMEHGEAR------IRVFEFP-DLTSIPFN-------------- 45
+D CI CKAC+VAC E + R + V++ P DL++ +
Sbjct: 34 IDVSTCIGCKACQVACS-EWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLE 92
Query: 46 -------CRHCERAPCLEVCPT-GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE 97
C HCE CL+ CP+ GA+ + + V F CIGC C CPF +P+L++
Sbjct: 93 WLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNK 152
Query: 98 ANKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRV 145
+ + KC LC DR + G+ PACV CPT A+ +G E+L E RV
Sbjct: 153 EDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRV 200
>gb|AAF91267.1|AF230199_9 (AF230199) pyruvate oxidoreductase cysteine-rich subunit 2
[Methanococcus maripaludis]
Length = 138
Score = 102 bits (253), Expect = 2e-21
Identities = 51/128 (39%), Positives = 67/128 (51%), Gaps = 14/128 (10%)
Query: 4 KIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGAL 63
K+ + C+ CK CE AC + I VF+ IP C HCE APCL VCP A+
Sbjct: 2 KVMPNIDLCVDCKKCERACPIN----AIHVFD-----GIPIRCMHCEDAPCLNVCPEDAI 52
Query: 64 YRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVSA 123
+ D V P KC+GC +CA CP G ++D K+ KCD C +R ++ C+
Sbjct: 53 EKIADKVVVH-PEKCVGCALCAEVCPVGAIQIDRCTKVAVKCDGCIERGSE----VCLEV 107
Query: 124 CPTDALKY 131
CPT AL Y
Sbjct: 108 CPTKALDY 115
>gb|AAD37318.1|AF135170_9 (AF135170) dimethyl sulfoxide reductase subunit B [Yersinia pestis]
Length = 205
Score = 102 bits (253), Expect = 2e-21
Identities = 56/165 (33%), Positives = 76/165 (45%), Gaps = 37/165 (22%)
Query: 6 FLDYRRCIACKACEVAC-----------------------EMEHGEARIRVFEFPDLTSI 42
++D RC CK CE+AC + ++G VF + +
Sbjct: 8 YIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFAY----YL 63
Query: 43 PFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIM 102
C HC C +VCP+GA+++ D V + CIGC C +ACP+G P+ D M
Sbjct: 64 SIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAEKGHM 123
Query: 103 DKCDLCADRRAQGKLPACVSACPTDAL----------KYGDINEI 137
KCD C +R A GK P CV +CP AL KYGD+ EI
Sbjct: 124 TKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELREKYGDLAEI 168
>dbj|BAA74792.1| (AB017192) nitrate reductase electron transfer subunit [Clostridium
perfringens]
Length = 137
Score = 102 bits (252), Expect = 3e-21
Identities = 49/138 (35%), Positives = 76/138 (54%), Gaps = 6/138 (4%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHG--EARIRVFEFPDLTSIPFNCRHCERAPCLEVCPT 60
K+I ++ +C+ C C AC + H + R R+ + P CRHC+R C+ C +
Sbjct: 2 KRIKINRDKCVGCLTCTTACIVSHDSEDTRSRIAITSEGKYTPIFCRHCDRPECVYTCMS 61
Query: 61 GALYRDCDNA-VAFDPLKCIGCLMCAVACPFGVPKLD-EANKIMDKCDLCADRRAQGKLP 118
GA+ +D + V +D +C C MC +ACP+GV K + E NK + KCD+CA + K P
Sbjct: 62 GAMKKDKETGFVTYDKSRCASCFMCVMACPYGVLKAEHEMNKYIMKCDMCASTKE--KTP 119
Query: 119 ACVSACPTDALKYGDINE 136
CV+ CP A+ ++ E
Sbjct: 120 QCVAKCPMGAITLEEVEE 137
>gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
[Sulfolobus solfataricus]
Length = 409
Score = 101 bits (250), Expect = 4e-21
Identities = 54/155 (34%), Positives = 77/155 (48%), Gaps = 14/155 (9%)
Query: 1 MSKKI--FLDYRRCIACKACEVACEMEHGEARIR----VFEFPDLTSIPFNCRHCERAPC 54
M +K+ D+ +CI C AC AC +G+ R + T++ C HC+ C
Sbjct: 12 MERKLGFIFDHNKCIICNACVDACNKAYGDLNWRSLIVMTHGESKTALSIACNHCDNPTC 71
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQ 114
++VCP A+ ++ V KCIGC C ACP+ K + +M KC C DR A+
Sbjct: 72 MQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-VMSKCHFCYDRLAE 130
Query: 115 GK-LPACVSACPTDALKYGDINEILWKREGRVVLN 148
GK +P CV ACPT AL +G W +G +N
Sbjct: 131 GKGIPYCVEACPTGALAFG------WIEKGEAEVN 159
>pir||B81298 formate dehydrogenase (EC 1.2.1.2) iron-sulfur chain Cj1510c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968935|emb|CAB73931.1| (AL139078) putative formate
dehydrogenase iron-sulfur subunit [Campylobacter jejuni]
Length = 213
Score = 101 bits (248), Expect = 8e-21
Identities = 61/166 (36%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 4 KIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLT----------SIPFNCRHCERAP 53
K F D RCI C C VAC+ H E I + +T S +C HC+ AP
Sbjct: 15 KFFCDNERCIDCNGCAVACDEAH-ELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAP 73
Query: 54 CLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE----ANK-IMDKCDLC 108
C VCP Y D V D CIGC C ACPFG P+ + NK IMDKC +C
Sbjct: 74 CSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMC 133
Query: 109 A-----------------DRRAQGKLPACVSACPTDALKYGDINEI 137
A +R A+GK+P C + C T AL G+ ++I
Sbjct: 134 AGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKI 179
>sp|P31894|COOF_RHORU IRON-SULFUR PROTEIN >gi|282185|pir||B42957 iron-sulfur protein CooF
[similarity] - Rhodospirillum rubrum
>gi|1498747|gb|AAC45122.1| (U65510) iron sulfur protein
[Rhodospirillum rubrum]
Length = 190
Score = 100 bits (247), Expect = 1e-20
Identities = 63/182 (34%), Positives = 85/182 (46%), Gaps = 37/182 (20%)
Query: 5 IFLDYRRCIACKACEVACEMEHG---------------EARIRVFEFPDLTSIPFNCRHC 49
I+ + C++C +CE+AC + H AR +V D T++P CR C
Sbjct: 10 IYANPDHCLSCHSCELACAVAHSGGHDMIEAIAANLPLHARNKVVSV-DGTAMPMQCRQC 68
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEA----------N 99
E APC CPTGA R D V CIGC +C + CPFG +
Sbjct: 69 EDAPCTFACPTGAC-RQADGQVQIVEQHCIGCKLCVMVCPFGAITVRSETVVEQGACTNR 127
Query: 100 KIMDKCDLCADRRAQ-GK-LPACVSACPTDALKYGDINEILWKREGRVVLNLKEARDKSV 157
+ KCDLC D RA GK PACV ACPT A++ D++ + L+EAR + +
Sbjct: 128 GVAKKCDLCVDWRASTGKTAPACVEACPTKAIRMVDLDAYR--------IALREARAREI 179
Query: 158 GK 159
K
Sbjct: 180 AK 181
>gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD) protein
[Escherichia coli]
Length = 652
Score = 99.8 bits (245), Expect = 2e-20
Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA-----------RIRVFEFPDLTSIPFNCRHC 49
M++ I + ++C+ C ACE+AC M H + RI V + S C HC
Sbjct: 1 MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSA-VTCHHC 59
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKL-------DEANKIM 102
E APC CP GA+ D+++ + KCIGC C VACPFG ++ +
Sbjct: 60 EDAPCARSCPNGAISH-VDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATA 118
Query: 103 DKCDLCADRRAQGKLPACVSACPTDALK 130
KCDLCA R PACV CP DAL+
Sbjct: 119 HKCDLCAGRE---NGPACVENCPADALQ 143
>sp|P44450|FDXH_HAEIN FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT (FORMATE DEHYDROGENASE
BETA SUBUNIT) (FDH BETA SUBUNIT) >gi|1074094|pir||A64042
formate dehydrogenase (EC 1.2.1.2), nitrate-inducible,
beta chain - Haemophilus influenzae (strain Rd KW20)
>gi|1572950|gb|AAC21685.1| (U32686) formate
dehydrogenase, beta subunit (fdxH) [Haemophilus
influenzae Rd]
Length = 312
Score = 99.8 bits (245), Expect = 2e-20
Identities = 59/169 (34%), Positives = 82/169 (47%), Gaps = 31/169 (18%)
Query: 7 LDYRRCIACKACEVACEMEHGEAR-------IRVFEFP-DL-----TSIPFN-------- 45
+D CI CKAC+V C E + R + V++ P DL T + FN
Sbjct: 39 IDVSTCIGCKACQVGCS-EWNDIRSDINAQCVGVYDNPVDLDAKAWTVMRFNEVEENDRL 97
Query: 46 --------CRHCERAPCLEVCPT-GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLD 96
C HC CL+ CP GA+ + + V F KCIGC C CPF +P+++
Sbjct: 98 EWLIRKDGCMHCTEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMN 157
Query: 97 EANKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRV 145
+ + KC LC DR + G+ PACV CPT A+++G E+ E RV
Sbjct: 158 PEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIRFGSKEEMKIYAEQRV 206
>sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG protein - Escherichia
coli (strain K-12) >gi|1788811|gb|AAC75521.1| (AE000333)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 659
Score = 99.8 bits (245), Expect = 2e-20
Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA-----------RIRVFEFPDLTSIPFNCRHC 49
M++ I + ++C+ C ACE+AC M H + RI V + S C HC
Sbjct: 1 MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSA-VTCHHC 59
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKL-------DEANKIM 102
E APC CP GA+ D+++ + KCIGC C VACPFG ++ +
Sbjct: 60 EDAPCARSCPNGAISH-VDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATA 118
Query: 103 DKCDLCADRRAQGKLPACVSACPTDALK 130
KCDLCA R PACV CP DAL+
Sbjct: 119 HKCDLCAGRE---NGPACVENCPADALQ 143
>dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number P37127]~start codon
is not identified yet [Escherichia coli]
Length = 671
Score = 99.8 bits (245), Expect = 2e-20
Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA-----------RIRVFEFPDLTSIPFNCRHC 49
M++ I + ++C+ C ACE+AC M H + RI V + S C HC
Sbjct: 13 MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQQRSA-VTCHHC 71
Query: 50 ERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKL-------DEANKIM 102
E APC CP GA+ D+++ + KCIGC C VACPFG ++ +
Sbjct: 72 EDAPCARSCPNGAISH-VDDSIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATA 130
Query: 103 DKCDLCADRRAQGKLPACVSACPTDALK 130
KCDLCA R PACV CP DAL+
Sbjct: 131 HKCDLCAGRE---NGPACVENCPADALQ 155
>sp|P56256|YSAA_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YSAA >gi|7432697|pir||G65156
hypothetical 17.5 kD protein in avtA-selB intergenic
region - Escherichia coli (strain K-12)
>gi|2367245|gb|AAC76597.1| (AE000435) orf, hypothetical
protein [Escherichia coli K12]
Length = 157
Score = 99.8 bits (245), Expect = 2e-20
Identities = 57/152 (37%), Positives = 78/152 (50%), Gaps = 20/152 (13%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGE-------------ARIRVFEFPDLTSIPFNCR 47
M++ I D +CI C+ CEVAC + H E +RIRV + T+ C
Sbjct: 1 MNRFIIADATKCIGCRTCEVACAVSHHENQDCAALSPDEFISRIRVIKDHCWTT-AVACH 59
Query: 48 HCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMD--KC 105
CE APC VCP A+ R+ + + +CIGC C +ACPFG ++ + K KC
Sbjct: 60 QCEDAPCANVCPVDAISRE-HGHIFVEQTRCIGCKSCMLACPFGAMEVVSSRKKARAIKC 118
Query: 106 DLCADRRAQGKLPACVSACPTDALKYGDINEI 137
DLC R PACV ACPT AL+ D+ ++
Sbjct: 119 DLCWHRETG---PACVEACPTKALQCMDVEKV 147
>sp|P45003|DMSB_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN B (DMSO REDUCTASE
IRON-SULFUR SUBUNIT) >gi|1073845|pir||F64109
dimethylsulfoxide reductase (EC 1.8.-.-) chain B,
anaerobic - Haemophilus influenzae (strain Rd KW20)
>gi|1574080|gb|AAC22705.1| (U32785) anaerobic dimethyl
sulfoxide reductase, chain B (dmsB) [Haemophilus
influenzae Rd]
Length = 205
Score = 99.8 bits (245), Expect = 2e-20
Identities = 51/155 (32%), Positives = 73/155 (46%), Gaps = 20/155 (12%)
Query: 6 FLDYRRCIACKACEVAC----EMEHGEARIRVFEFPD----------------LTSIPFN 45
+ D RC CK CE+AC ++ R++E+ + +
Sbjct: 7 YFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSIS 66
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKC 105
C HC C +VCPTGA++++ D V + CIGC C +ACP+ P+ D M KC
Sbjct: 67 CNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKC 126
Query: 106 DLCADRRAQGKLPACVSACPTDALKYGDINEILWK 140
D C R G+ P CV ACP AL + I+E+ K
Sbjct: 127 DGCYSRVKSGQKPICVDACPLRALDFAPIDELRTK 161
>pir||F83044 nitrate-inducible formate dehydrogenase, beta subunit PA4811
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9951079|gb|AAG08197.1|AE004894_3 (AE004894)
nitrate-inducible formate dehydrogenase, beta subunit
[Pseudomonas aeruginosa]
Length = 309
Score = 99.1 bits (243), Expect = 3e-20
Identities = 57/170 (33%), Positives = 82/170 (47%), Gaps = 31/170 (18%)
Query: 7 LDYRRCIACKACEVACEMEHGEARIRV------FEFP-DLTSIPFN-------------- 45
+D +CI CKAC+VAC E E R V ++ P DLT+ +
Sbjct: 29 IDVSKCIGCKACQVACS-EWNELRDEVGHNHGTYDNPMDLTADSWTVMRFTEHENEAGNL 87
Query: 46 --------CRHCERAPCLEVCPT-GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLD 96
C HC CL+ CP+ GA+ + + V F+ KCIGC C CPF +P++
Sbjct: 88 EWLIRKDGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFDIPRIS 147
Query: 97 EANKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVV 146
+ + KC LC+DR + G PACV CPT A+ +G ++ R+V
Sbjct: 148 QKDHKAYKCSLCSDRVSVGMEPACVKTCPTGAIVFGSKEDMKEHAAERIV 197
>gb|AAB06234.1| (U26665) dimethyl sulphoxide reductase subunit B [Haemophilus
influenzae]
Length = 205
Score = 99.1 bits (243), Expect = 3e-20
Identities = 51/155 (32%), Positives = 73/155 (46%), Gaps = 20/155 (12%)
Query: 6 FLDYRRCIACKACEVAC----EMEHGEARIRVFEFPDLT----------------SIPFN 45
+ D RC CK CE+AC ++ R++E+ + +
Sbjct: 7 YFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFGYYMSIS 66
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKC 105
C HC C +VCPTGA++++ D V + CIGC C +ACP+ P+ D M KC
Sbjct: 67 CNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKC 126
Query: 106 DLCADRRAQGKLPACVSACPTDALKYGDINEILWK 140
D C R G+ P CV ACP AL + I+E+ K
Sbjct: 127 DGCYSRVKSGQKPICVDACPLRALDFAPIDELRTK 161
>pir||F65072 hypothetical protein b2886 - Escherichia coli (strain K-12)
>gi|887836|gb|AAA83067.1| (U28375) ORF_f163 [Escherichia
coli] >gi|1789252|gb|AAC75924.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 163
Score = 97.9 bits (240), Expect = 7e-20
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 19/160 (11%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA----------RIRVFEFPDLTSIPFNCRHCE 50
M I ++ CI C+ CEVAC + H R++V D S P C CE
Sbjct: 2 MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRL-DSISAPVMCHQCE 60
Query: 51 RAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLD----EANKIMDKCD 106
APC+ CP GAL + V + +CIGC C ACPFG+ + + + + KCD
Sbjct: 61 NAPCVGACPVGALTMG-EQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCD 119
Query: 107 LCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVV 146
LC ++R +G PACV +CPT AL+ E+ R+ R+V
Sbjct: 120 LC-EQREEG--PACVESCPTQALQLLTERELRRVRQQRIV 156
>pir||D69096 formate hydrogenlyase, iron-sulfur subunit 2 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622846|gb|AAB86186.1| (AE000928) formate
hydrogenlyase, iron-sulfur subunit 2 [Methanobacterium
thermoautotrophicum]
Length = 160
Score = 97.9 bits (240), Expect = 7e-20
Identities = 57/155 (36%), Positives = 78/155 (49%), Gaps = 10/155 (6%)
Query: 7 LDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHC--ERAPCLEVCPTGALY 64
+D RC C C AC HG AR R + +P C C E+APC +CP GA+
Sbjct: 12 MDPARCSGCDDCINACRETHGVARARKGD-----RMPLFCLQCHPEKAPCARICPVGAI- 65
Query: 65 RDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVSAC 124
R+ D A+ D CI C +C VACP G+ ++ K +KC LC D A+ LPACV AC
Sbjct: 66 REVDGALVVDEESCILCKLCMVACPAGMIVMNTEKKSAEKCTLCMD--AEVILPACVEAC 123
Query: 125 PTDALKYGDINEILWKREGRVVLNLKEARDKSVGK 159
+ LK ++++ R+ + E K GK
Sbjct: 124 KENVLKLVSLDDLAELRDRADFSEVLEEAVKIYGK 158
>sp|Q46819|YGFS_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YGFS
Length = 162
Score = 97.9 bits (240), Expect = 7e-20
Identities = 58/160 (36%), Positives = 81/160 (50%), Gaps = 19/160 (11%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGEA----------RIRVFEFPDLTSIPFNCRHCE 50
M I ++ CI C+ CEVAC + H R++V D S P C CE
Sbjct: 1 MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRL-DSISAPVMCHQCE 59
Query: 51 RAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLD----EANKIMDKCD 106
APC+ CP GAL + V + +CIGC C ACPFG+ + + + + KCD
Sbjct: 60 NAPCVGACPVGALTMG-EQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCD 118
Query: 107 LCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVV 146
LC ++R +G PACV +CPT AL+ E+ R+ R+V
Sbjct: 119 LC-EQREEG--PACVESCPTQALQLLTERELRRVRQQRIV 155
>pir||G72495 probable polysulfide reductase APE2605 - Aeropyrum pernix (strain
K1) >gi|5106312|dbj|BAA81623.1| (AP000064) 250aa long
hypothetical polysulfide reductase [Aeropyrum pernix]
Length = 250
Score = 97.5 bits (239), Expect = 9e-20
Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 5 IFLDYRRCIACKACEVACEMEHG------EARIRVFEFPDLTSI--PFNCRHCERAPCLE 56
+F+D +C C AC VAC E+ I + D T + P C HC+ C++
Sbjct: 73 MFIDVDKCYGCYACVVACAHENNVPIGVYRTWIERYVKEDGTPVYVPKQCNHCDNPSCVD 132
Query: 57 VCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGK 116
VCP A Y + D V D CIGC C CP+G + + DKC C R
Sbjct: 133 VCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGARFYNPIKGVADKCTFCVHRIYSDM 192
Query: 117 LPACVSACPTDALKYGDI 134
LPACV ACPT A +G++
Sbjct: 193 LPACVEACPTGARVFGEL 210
>pir||H82191 formate dehydrogenase, iron-sulfur chain VC1512 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656016|gb|AAF94667.1| (AE004229) formate
dehydrogenase, iron-sulfur subunit [Vibrio cholerae]
Length = 202
Score = 97.5 bits (239), Expect = 9e-20
Identities = 60/167 (35%), Positives = 71/167 (41%), Gaps = 33/167 (19%)
Query: 4 KIFLDYRRCIACKACEVACEMEHGEA------RIRVFEF----PDLTSIPFNCRHCERAP 53
K D +RCI C C AC+ E+ +A R RV P SI C HC AP
Sbjct: 5 KFLCDTKRCIECNGCVTACKNENDDALEWGIQRRRVVTLNDGEPGENSISVACMHCTDAP 64
Query: 54 CLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKI-----MDKCDLC 108
C+ VCP D V + CIGC C ACPFG P+ + MDKC C
Sbjct: 65 CMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAAFGERGKMDKCTFC 124
Query: 109 ------------------ADRRAQGKLPACVSACPTDALKYGDINEI 137
A+R A+GKLP C S C T AL GD +I
Sbjct: 125 AGGPETEPGSEEERRKYGANRIAEGKLPMCASLCSTKALLAGDAEKI 171
>pir||E72382 iron-sulfur cluster-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980900|gb|AAD35481.1|AE001719_7 (AE001719)
iron-sulfur cluster-binding protein [Thermotoga
maritima]
Length = 152
Score = 97.1 bits (238), Expect = 1e-19
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 23/152 (15%)
Query: 3 KKIFLDYRRCIACKACEVAC---EMEHGEARIRVFEFP-------------DLTSIPFNC 46
++I + C+ CK CE+ C ++ G I+V+ + D + C
Sbjct: 6 RRILIREEYCMGCKLCEINCVAAQVGTGNL-IKVYRYVPELPEPNVIVEEHDYVTFALQC 64
Query: 47 RHCERAPCLEVCPTGALYRDCDN-AVAFDPLKCIGCLMCAVACPFGVPKLD-EANKIMDK 104
R+C+ CL+ C TGA++RD A+ + KC+GC MC +ACPFGV + + + K+ K
Sbjct: 65 RNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASK 124
Query: 105 CDLCADRRAQGKLPACVSACPTDALKYGDINE 136
CDLCADR P CV CP +AL ++ E
Sbjct: 125 CDLCADRGT----PGCVEGCPNEALVLVEVRE 152
>pir||H75154 electron transport protein PAB2084 - Pyrococcus abyssi (strain
Orsay) >gi|5457829|emb|CAB49319.1| (AJ248284) ELECTRON
TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 166
Score = 96.7 bits (237), Expect = 1e-19
Identities = 51/144 (35%), Positives = 75/144 (51%), Gaps = 14/144 (9%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEH------GEARIRVFEFPDL-TSIPFNCRHCERAP 53
M +I ++ RC C+ CE+ C H +RI + + L +P CR C+ AP
Sbjct: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAP 60
Query: 54 CLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRA 113
C+E CPTGA+ R+ + + +C GC C ACPFG KL K+ CDLC
Sbjct: 61 CMEACPTGAIKRE-NGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----- 114
Query: 114 QGKLPACVSACPTDALKYGDINEI 137
G P C++ CPT+AL ++++I
Sbjct: 115 -GGDPVCIAKCPTNALSLSNLSDI 137
>gb|AAG19285.1| (AE005024) molybdopterin oxidoreductase; HmoA [Halobacterium sp.
NRC-1]
Length = 262
Score = 96.0 bits (235), Expect = 3e-19
Identities = 55/173 (31%), Positives = 80/173 (45%), Gaps = 41/173 (23%)
Query: 5 IFLDYRRCIACKACEVACEMEH----GEARIRVF------------EFPD--------LT 40
+ +D RCI C++C + C+ E+ G+ RV ++P+ +T
Sbjct: 6 LVIDQERCIGCQSCSLTCKQENNVPMGQFWNRVLTQGGDHVDTPSGDYPEGGDGGTLEMT 65
Query: 41 SIPFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFG--VPKLDEA 98
P C+HCE APC++VCP A Y D V D KC+GC C ACP+ V DE
Sbjct: 66 YQPTACQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCMGCRYCMAACPYNARVFNWDEP 125
Query: 99 NK---------------IMDKCDLCADRRAQGKLPACVSACPTDALKYGDINE 136
+++KC C+ R G PACV CP DA +GD+++
Sbjct: 126 EHRPEDGTGDVAERPQGVVEKCTFCSHRVEDGLDPACVVNCPADARIFGDLDD 178
>sp|P32175|FDOH_ECOLI FORMATE DEHYDROGENASE-O, IRON-SULFUR SUBUNIT (FORMATE
DEHYDROGENASE-O BETA SUBUNIT) (FDH-Z BETA SUBUNIT)
(AEROBIC FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT)
>gi|541070|pir||S40837 formate dehydrogenase (EC
1.2.1.2) O (aerobic) beta chain - Escherichia coli
>gi|304997|gb|AAB03026.1| (L19201) formate
dehydrogenase-O beta subunit [Escherichia coli]
>gi|1790326|gb|AAD13455.1| (AE000464) formate
dehydrogenase-O, iron-sulfur subunit [Escherichia coli
K12]
Length = 300
Score = 95.2 bits (233), Expect = 4e-19
Identities = 54/155 (34%), Positives = 75/155 (47%), Gaps = 30/155 (19%)
Query: 7 LDYRRCIACKACEVACEMEHGEAR------IRVFEFP-DLTSIPFN-------------- 45
+D CI CKAC+VAC E + R I V++ P DL++ +
Sbjct: 34 IDVTTCIGCKACQVACS-EWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLE 92
Query: 46 -------CRHCERAPCLEVCPT-GALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE 97
C HC CL+ CP GA+ + + V F +CIGC C CPF +P+L+
Sbjct: 93 WLIRKDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNP 152
Query: 98 ANKIMDKCDLCADRRAQGKLPACVSACPTDALKYG 132
+ + KC LC DR G+ PACV CPT A+ +G
Sbjct: 153 EDNRVYKCTLCVDRVVVGQEPACVKTCPTGAIHFG 187
>sp|P30132|HYDN_ECOLI ELECTRON TRANSPORT PROTEIN HYDN >gi|7432696|pir||E65051 4Fe-4S
iron-sulfur protein - Escherichia coli (strain K-12)
>gi|216575|dbj|BAA03314.1| (D14422) 4Fe-4S iron-sulfer
protein, putative [Escherichia coli]
>gi|882606|gb|AAA69223.1| (U29579) 4Fe-4S iron-sulfur
protein [Escherichia coli] >gi|1789067|gb|AAC75755.1|
(AE000355) involved in electron transport from formate
to hydrogen, Fe-S centers [Escherichia coli K12]
Length = 175
Score = 95.2 bits (233), Expect = 4e-19
Identities = 61/167 (36%), Positives = 83/167 (49%), Gaps = 37/167 (22%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGE-------------ARIRVFEFPDLTSIPFNCR 47
M++ I D +CI C+ CEVAC + H E RI V + ++++ CR
Sbjct: 1 MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKGVNISTATV-CR 59
Query: 48 HCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKL------------ 95
CE APC VCP GA+ RD V +CIGC C VACP+G ++
Sbjct: 60 QCEDAPCANVCPNGAISRD-KGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAG 118
Query: 96 -----DEANKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEI 137
D+A +KCDLC + R G PAC++ACPT AL D N++
Sbjct: 119 LNVRADKAE--ANKCDLC-NHREDG--PACMAACPTHALICVDRNKL 160
>sp|Q57619|FER8_METJA PUTATIVE FERREDOXIN MJ0155 >gi|2127909|pir||D64319 probable formate
dehydrogenase (EC 1.2.1.2) iron-sulfur protein -
Methanococcus jannaschii >gi|1498926|gb|AAB98137.1|
(U67472) formate dehydrogenase, iron-sulfur subunit
[Methanococcus jannaschii]
Length = 151
Score = 93.2 bits (228), Expect = 2e-18
Identities = 51/127 (40%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
K I L+ +C C C C+ HGE+R+R + IP C CE APC E+CP A
Sbjct: 4 KIIVLNPEKCTKCYDCINICKEIHGESRVRKVD-----GIPIFCMQCENAPCKEICPVDA 58
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+Y D D +CI C MCA+ACP G + N++ KC LC D PACV
Sbjct: 59 IYLK-DGIPIVDKERCIACGMCAIACPIGA--IFIKNRVAHKCTLCLD--VDRITPACVE 113
Query: 123 ACPTDAL 129
AC AL
Sbjct: 114 ACKDKAL 120
>pir||C69099 formate hydrogenlyase, iron-sulfur subunit I - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622868|gb|AAB86207.1| (AE000929) formate
hydrogenlyase, iron-sulfur subunit I [Methanobacterium
thermoautotrophicum]
Length = 167
Score = 93.2 bits (228), Expect = 2e-18
Identities = 53/144 (36%), Positives = 76/144 (51%), Gaps = 13/144 (9%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
+KI + C C+ CE AC+ +G +RI + E D+ P C+ CE APC VCPT A
Sbjct: 4 QKIVIQPELCDGCRDCEEACKKLYGASRIMIRELDDVY-YPIICQQCEDAPCRTVCPTDA 62
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+ D+ V DP +CIGC +C V CPFG +++ + KC C + PACV
Sbjct: 63 I----DDEV--DPERCIGCGLCMVVCPFGAVVMED--RKAQKCSQCPNL----DTPACVK 110
Query: 123 ACPTDALKYGDINEILWKREGRVV 146
AC AL D ++ +R+ + V
Sbjct: 111 ACSKRALSVIDTEKLKLERQKKFV 134
>gi|11497774 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432701|pir||E69269
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650484|gb|AAB91070.1| (AE001095) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 180
Score = 92.4 bits (226), Expect = 3e-18
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 13/152 (8%)
Query: 7 LDYRRCIACKACEVACEMEH----GEARIRVFEFP---DLTSIPFNCRHCERAPCLEVCP 59
+D +C C +C AC E+ G R V + + +P C HC+ C+ CP
Sbjct: 11 VDVSKCYGCLSCVAACAAENNVPVGYFRTWVERYAMNGRVAFVPKICNHCDNPSCVHACP 70
Query: 60 TGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPA 119
A Y+ + V D CIGC C ACP+G + DKC LC + R +LPA
Sbjct: 71 VNATYKTEEGLVLIDDEICIGCGACIQACPYGARFRNPVKGTADKCTLC-NHRIPERLPA 129
Query: 120 CVSACPTDALKYGD-----INEILWKREGRVV 146
CV +CPT A YG + EIL K+ V+
Sbjct: 130 CVESCPTSARVYGKMSDKAVKEILSKKNAVVL 161
>sp|P33389|HMC2_DESVH 40.1 KD PROTEIN IN HMC OPERON (ORF 2) >gi|538847|pir||B40605
transmembrane redox protein, hmc-region - Desulfovibrio
vulgaris >gi|290378|gb|AAA71995.1| (L16784) ORF2
[Desulfovibrio vulgaris]
Length = 370
Score = 92.1 bits (225), Expect = 4e-18
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 8 DYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIP---------------FN------- 45
D RCI C+ CE AC E + +F DLT + +N
Sbjct: 45 DSTRCIGCRKCEQACN-EVNKLPAPKAKFDDLTVLEKTRRTDADSWTVVNRYNAAGLDHP 103
Query: 46 ------CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEA- 98
C HC C C A ++ D +V +D C+GC C VACPF VP A
Sbjct: 104 VFRKQQCNHCLEPACASACFVKAFTKNPDGSVTYDGSLCVGCRYCMVACPFNVPAFQYAE 163
Query: 99 --NKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVVLN 148
+ ++ KC +C R A+GKLP CV CP +AL +G +++ R+ N
Sbjct: 164 AFDPLIQKCTMCHPRLAEGKLPGCVEICPKEALTFGRRKDLVRIAHDRIRQN 215
>pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jannaschii
Length = 168
Score = 92.1 bits (225), Expect = 4e-18
Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
KKI + C C C AC ++ RI + E D IP C+HC APC EVCP A
Sbjct: 6 KKIIMTNFNCDNCGDCVKACMEKNKVGRIAIME-KDGKYIPIVCQHCASAPCKEVCPVSA 64
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+ D V + CIGC +CA+ACPFG +++ KC LC G PACV
Sbjct: 65 IEHK-DGYVYLNEDVCIGCGLCALACPFGAILMEDK---AYKCILC-----NGDEPACVK 115
Query: 123 ACPTDALKYGDINEILWKREGR 144
AC L+ D+NE+++ + +
Sbjct: 116 ACSKRCLELVDVNELIFAKRDK 137
>gb|AAB98252.1| (U67482) carbon monoxide dehydrogenase, iron sulfur subunit CooF-1
(cooF2) [Methanococcus jannaschii]
Length = 166
Score = 92.1 bits (225), Expect = 4e-18
Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
KKI + C C C AC ++ RI + E D IP C+HC APC EVCP A
Sbjct: 4 KKIIMTNFNCDNCGDCVKACMEKNKVGRIAIME-KDGKYIPIVCQHCASAPCKEVCPVSA 62
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+ D V + CIGC +CA+ACPFG +++ KC LC G PACV
Sbjct: 63 IEHK-DGYVYLNEDVCIGCGLCALACPFGAILMEDK---AYKCILC-----NGDEPACVK 113
Query: 123 ACPTDALKYGDINEILWKREGR 144
AC L+ D+NE+++ + +
Sbjct: 114 ACSKRCLELVDVNELIFAKRDK 135
>gi|11498555 carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
[Archaeoglobus fulgidus] >gi|7432706|pir||F69368 carbon
monoxide dehydrogenase, iron sulfur subunit (cooF)
homolog - Archaeoglobus fulgidus
>gi|2649645|gb|AAB90290.1| (AE001038) carbon monoxide
dehydrogenase, iron sulfur subunit (cooF) [Archaeoglobus
fulgidus]
Length = 157
Score = 91.7 bits (224), Expect = 5e-18
Identities = 47/134 (35%), Positives = 63/134 (46%), Gaps = 19/134 (14%)
Query: 12 CIACKACEVACEMEHGEAR--IRVFEFPDLTSIP-------------FNCRHCERAPCLE 56
CI C CEV C + H +++ I+ F + P CRHCE C+
Sbjct: 19 CIGCHLCEVWCSVAHSKSKDIIKAFLYEQPRPQPRILVEEDLPETYALQCRHCEEPKCVA 78
Query: 57 VCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGK 116
C GALY+D D V D KC+ C C +ACP+G +++ K KCDLC
Sbjct: 79 ACIAGALYKDDDGIVIHDESKCVACYSCIMACPYGAIRINIETKKPLKCDLCKGL----D 134
Query: 117 LPACVSACPTDALK 130
P CV CP +AL+
Sbjct: 135 YPYCVKYCPNNALE 148
>gb|AAF91266.1|AF230199_8 (AF230199) pyruvate oxidoreductase cysteine-rich subunit 1
[Methanococcus maripaludis]
Length = 167
Score = 91.7 bits (224), Expect = 5e-18
Identities = 51/157 (32%), Positives = 77/157 (48%), Gaps = 8/157 (5%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
KK+ + C C C +C H + I ++E +P C+HC +PC++VCP A
Sbjct: 2 KKVMMVNEACDNCGDCVKSCSEVHEVSGISIWEHEG-RYLPVVCQHCTSSPCMDVCPVSA 60
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+ D + D CIGC +CA+ACPFG + + K KCDLC R Q ACV
Sbjct: 61 I-ESKDGVIYLDKESCIGCGLCAMACPFGAIYI--SGKTAHKCDLCFGRDEQ----ACVK 113
Query: 123 ACPTDALKYGDINEILWKREGRVVLNLKEARDKSVGK 159
AC L+ +++E++ ++ + NL K K
Sbjct: 114 ACSKRCLEVVNVDELVMDKKLNNIENLTVLGSKGKSK 150
>pir||T50875 hypothetical electron transfer protein [imported] - Rubrivivax
gelatinosus >gi|7416779|dbj|BAA94028.1| (AB034704)
hypothetical electron transfer protein with 4 FeS
centers [Rubrivivax gelatinosus]
Length = 321
Score = 89.7 bits (219), Expect = 2e-17
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 53/198 (26%)
Query: 7 LDYRRCIACKACEVACEMEHGEAR------IRVFEFPDLTS------------------- 41
L+ +C + C AC E+ R IRV + PD T
Sbjct: 105 LNISKCKGYRDCVEACVKENNLGRDSQMQYIRVLQMPDGTMDLEKAEHYYDAKQVPVPGH 164
Query: 42 --IPFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGV------- 92
+P C C+ PC++ CPT A +++ D V D CIGC C ACP+
Sbjct: 165 WYLPVQCMQCDNPPCVKACPTKATWKEPDGIVVVDYDWCIGCRYCMTACPYWARHFNWTE 224
Query: 93 PKLDEA---------------NKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDI--- 134
P++ A +++KC C+ R +G+ PAC ACPT A +G++
Sbjct: 225 PQIPAAEFNPNLNYLGNRPRPKGVVEKCHFCSQRARKGRQPACQEACPTGARVFGNLLDP 284
Query: 135 -NEILWKREGRVVLNLKE 151
+EI W E + V LKE
Sbjct: 285 KSEIRWVLENKNVFRLKE 302
>gi|11497792 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432702|pir||G69271
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650470|gb|AAB91057.1| (AE001094) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 251
Score = 88.9 bits (217), Expect = 3e-17
Identities = 50/193 (25%), Positives = 80/193 (40%), Gaps = 63/193 (32%)
Query: 7 LDYRRCIACKACEVACEMEHG----------------EARIRVFEFPDLTSI--PFNCRH 48
+D RCI C++C V C++ + E + ++P+LT + P C H
Sbjct: 8 IDLNRCIGCRSCAVICKIHNSLPPGTWWHRVETVGSKEHQTPSGDYPNLTELYLPVPCMH 67
Query: 49 CERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANK-------- 100
C+ PC++VCP GA ++ D V D +CIGC C ACP+GV + + +K
Sbjct: 68 CDNPPCVKVCPVGATWKREDGVVLVDFERCIGCRYCMTACPYGVRQFNWEDKDKAVEKGF 127
Query: 101 -------------------------------------IMDKCDLCADRRAQGKLPACVSA 123
+++KC C +G PACV
Sbjct: 128 KAAGFEGEYVEGYRHGYPIDHRTKDGRLVYTPKRPRGVVEKCTFCVQYIDKGLKPACVRG 187
Query: 124 CPTDALKYGDINE 136
CP +A +GD+++
Sbjct: 188 CPGNARIFGDLDD 200
>gb|AAG13084.1| (U84760) DsrO [Allochromatium vinosum]
Length = 268
Score = 86.6 bits (211), Expect = 2e-16
Identities = 51/171 (29%), Positives = 77/171 (44%), Gaps = 39/171 (22%)
Query: 5 IFLDYRRCI-ACKACEVACEMEHG-----------------EARIRVFEFPD-----LTS 41
+ +D +C C AC AC+ E+G IR + D +T
Sbjct: 66 LLIDTAKCADGCSACVDACDRENGLDLQEPHGSESKWEHQKSVWIRKVKLQDNQTGRITQ 125
Query: 42 IPFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPF----------- 90
+P C+HCE PC++VCPTGA ++ D V D CIGC C +ACP+
Sbjct: 126 LPLMCQHCEHPPCVDVCPTGASFKRADGIVMVDRHLCIGCRYCMMACPYKARSFIHQPTT 185
Query: 91 -GVPKLDEANKIMDKCDLCADRRAQG-KLPACVSACPTD---ALKYGDINE 136
+ + ++ C+LC RR G + ACV AC + A+ +GD+ +
Sbjct: 186 GQLTAVPRGKGCVESCNLCVHRRDNGEESTACVDACAQEGHGAIVFGDLKD 236
>sp|P16428|HYCB_ECOLI FORMATE HYDROGENLYASE SUBUNIT 2 (FHL SUBUNIT 2) (HYDROGENASE-3
COMPONENT B) >gi|7432694|pir||H65052 hydrogenase (EC
1.18.99.1) 3 chain 2 - Escherichia coli
>gi|882617|gb|AAA69234.1| (U29579) formate hydrogenlyase
subunit 2 [Escherichia coli] >gi|1789079|gb|AAC75766.1|
(AE000356) probable small subunit of hydrogenase-3,
iron-sulfur protein (part of formate hydrogenlyase (FHL)
complex) [Escherichia coli K12]
Length = 203
Score = 86.2 bits (210), Expect = 2e-16
Identities = 63/190 (33%), Positives = 79/190 (41%), Gaps = 47/190 (24%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGE------ARIRVFEFPDLTSIPFNCRHCERAPC 54
M++ + D CI C CE AC H + R+RV + S P C HCE APC
Sbjct: 1 MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVM-LNEKESAPQLCHHCEDAPC 59
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFG-----------------VPKLDE 97
VCP A+ R D AV + C+ C +C +ACPFG PK
Sbjct: 60 AVVCPVNAITR-VDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPP 118
Query: 98 A-----------------NKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEI--L 138
A I KCDLC+ QG PACV CPT AL D +I +
Sbjct: 119 APPAPARVSTLLDWVPGIRAIAVKCDLCSFDE-QG--PACVRMCPTKALHLVDNTDIARV 175
Query: 139 WKREGRVVLN 148
KR+ + N
Sbjct: 176 SKRKRELTFN 185
>gb|AAG29808.1|AF249899_1 (AF249899) carbon monoxide dehydrogenase subunit CooF
[Carboxydothermus hydrogenoformans]
Length = 183
Score = 85.8 bits (209), Expect = 3e-16
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 28/150 (18%)
Query: 4 KIFLDYRRCIACKACEVACEMEHGEAR---------IR-----VFEFPDLTS--IPFNCR 47
K+ + C+AC +CEV+C + H + IR V+ D T C+
Sbjct: 42 KVIFNKNLCVACHSCEVSCSIIHSSEKSLISAILEGIRPRLQIVYTTGDKTGGITIEQCK 101
Query: 48 HCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMD---K 104
HC+RA C+E P GAL+ D + V KC GC +C ACPF A +++D K
Sbjct: 102 HCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPF------HAIRVIDRCVK 155
Query: 105 CDLCADRRAQGKLPACVSACPTDALKYGDI 134
CDLC D P CV++CP AL ++
Sbjct: 156 CDLCKD---VSDFPVCVTSCPVGALTVKEV 182
>pir||S08620 probable hydrogenase 3 protein 2 - Escherichia coli
>gi|809680|emb|CAA35547.1| (X17506) hycB [Escherichia
coli] >gi|1093495|prf||2104213B hycB gene [Escherichia
coli]
Length = 203
Score = 84.7 bits (206), Expect = 6e-16
Identities = 62/190 (32%), Positives = 78/190 (40%), Gaps = 47/190 (24%)
Query: 1 MSKKIFLDYRRCIACKACEVACEMEHGE------ARIRVFEFPDLTSIPFNCRHCERAPC 54
M++ + D CI C CE AC H + R+RV + S P C HCE APC
Sbjct: 1 MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVM-LNEKESAPQLCHHCEDAPC 59
Query: 55 LEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFG-----------------VPKLDE 97
VCP A+ R D AV + C+ C +C +ACPFG PK
Sbjct: 60 AVVCPVNAITR-VDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPP 118
Query: 98 A-----------------NKIMDKCDLCADRRAQGKLPACVSACPTDALKYGDINEI--L 138
A I KCDLC+ QG PAC CPT AL D +I +
Sbjct: 119 APPAPARVSTLLDWVPGIRAIAVKCDLCSFDE-QG--PACARMCPTKALHLVDNTDIARV 175
Query: 139 WKREGRVVLN 148
KR+ + N
Sbjct: 176 SKRKRELTFN 185
>pir||E71078 hypothetical protein PH0893 - Pyrococcus horikoshii
>gi|3257304|dbj|BAA29987.1| (AP000004) 161aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 161
Score = 82.7 bits (201), Expect = 2e-15
Identities = 46/126 (36%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 11 RCIACKACEVACEMEHGE------ARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGALY 64
+CI C CE+ C + H +RI V + P C CE APC VCP A++
Sbjct: 21 KCIGCHTCEMVCSLSHEGIVNPDLSRIHVIGYKG-EKFPIMCLQCEDAPCELVCPMEAIH 79
Query: 65 RDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVSAC 124
+ N D KCI C MC + CP G D N M +CDLC G P CV C
Sbjct: 80 ME-GNIRIVDDDKCIRCKMCTLVCPIGGVLYDYINNKMIRCDLC------GGDPQCVKYC 132
Query: 125 PTDALK 130
P +A++
Sbjct: 133 PMNAIE 138
>sp|P37179|HYBA_ECOLI HYDROGENASE-2 OPERON PROTEIN HYBA PRECURSOR >gi|7451557|pir||B65086
hydrogenase (EC 1.18.99.1) 2 small chain - Escherichia
coli >gi|544483|gb|AAA21589.1| (U09177) putative
hydrogenase-2 small subunit [Escherichia coli]
>gi|882525|gb|AAA69163.1| (U28377) hydrogenase-2 small
subunit [Escherichia coli] >gi|1789370|gb|AAC76032.1|
(AE000382) hydrogenase-2 small subunit [Escherichia coli
K12]
Length = 328
Score = 81.9 bits (199), Expect = 4e-15
Identities = 41/109 (37%), Positives = 57/109 (51%), Gaps = 7/109 (6%)
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVA-FDPLKCIGCLMCAVACPFGVPKLDEANKI--M 102
C HC C+ VCP AL +D + +D C GC C VACP+ VPK D N +
Sbjct: 112 CMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGAL 171
Query: 103 DKCDLC----ADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVVL 147
KC+LC +R +G LP CV CP A+ +G E++ + + R+ L
Sbjct: 172 HKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLAL 220
>pir||A55516 hybA protein - Escherichia coli
Length = 328
Score = 81.9 bits (199), Expect = 4e-15
Identities = 41/109 (37%), Positives = 57/109 (51%), Gaps = 7/109 (6%)
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVA-FDPLKCIGCLMCAVACPFGVPKLDEANKI--M 102
C HC C+ VCP AL +D + +D C GC C VACP+ VPK D N +
Sbjct: 112 CMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYDYNNPFGAL 171
Query: 103 DKCDLC----ADRRAQGKLPACVSACPTDALKYGDINEILWKREGRVVL 147
KC+LC +R +G LP CV CP A+ +G E++ + + R+ L
Sbjct: 172 HKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRLAL 220
>sp|Q57712|Y264_METJA HYPOTHETICAL PROTEIN MJ0264 >gi|2127910|pir||A64333 formate
hydrogenlyase, subunit 2 - Methanococcus jannaschii
>gi|1592278|gb|AAB98251.1| (U67482) carbon monoxide
dehydrogenase, iron sulfur subunit CooF-1 (cooF1)
[Methanococcus jannaschii]
Length = 153
Score = 81.9 bits (199), Expect = 4e-15
Identities = 48/136 (35%), Positives = 68/136 (49%), Gaps = 20/136 (14%)
Query: 3 KKIFLDYRRCIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGA 62
K + ++ CI C+ CE +C + I EFP C HC+R PCL CP A
Sbjct: 16 KMVVVNVGSCIGCRRCERSCPING----ITFNEFP------IKCMHCDRNPCLYACPENA 65
Query: 63 LYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVS 122
+ R +N V KC+GC +CA+ACPFG ++D + KC+ C R + C
Sbjct: 66 IER-INNKVVVIKDKCVGCGLCALACPFGAIRID---GVAIKCNGCYKRDVE----ICKE 117
Query: 123 ACPTDALKYGDINEIL 138
CPT A+ ++ EIL
Sbjct: 118 VCPTGAI--NNLEEIL 131
>pir||B69099 formate hydrogenlyase, iron-sulfur subunit 2 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622867|gb|AAB86206.1| (AE000929) formate
hydrogenlyase, iron-sulfur subunit 2 [Methanobacterium
thermoautotrophicum]
Length = 143
Score = 81.5 bits (198), Expect = 5e-15
Identities = 51/133 (38%), Positives = 63/133 (47%), Gaps = 17/133 (12%)
Query: 12 CIACKACEVACEMEHGEARIRVFEFPDLTSIPFNCRHC--ERAPCLEVCPTGALYRDCDN 69
C C CE C IRV + +P C HC ERAPCL +CP A+ + D
Sbjct: 11 CDECMKCERICPKN----AIRVID-----GVPVFCMHCSPERAPCLNICPEDAIV-EVDG 60
Query: 70 AVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRAQGKLPACVSACPTDAL 129
AV +CIGC +C ACP G L+E + KCDLC DR P CV CP AL
Sbjct: 61 AVVILEDRCIGCGLCRDACPVGAITLNERG-VAVKCDLCIDR----DKPLCVMVCPKGAL 115
Query: 130 KYGDINEILWKRE 142
+ + KR+
Sbjct: 116 SESSEDMMAAKRD 128
>gb|AAK41790.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
[Sulfolobus solfataricus]
Length = 228
Score = 80.0 bits (194), Expect = 2e-14
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 11 RCIACKACEVACEMEH------GEARIRVF-----EFPDLTSI--PFNCRHCERAPCLEV 57
+C+ C AC AC +E+ G R V E+P+ + P C CE PC V
Sbjct: 29 QCLGCDACVAACTIENQTPFWRGLFRTHVEDLELGEYPNTQRVFVPRLCMQCENPPCYYV 88
Query: 58 CPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFG---------VPKLDE---ANKI---- 101
CPTGA V D KC+GCL C ACP+G + K E N I
Sbjct: 89 CPTGATQIVAGGIVVVDEYKCMGCLYCVEACPYGARYFYTYEDIEKSKEYFGLNSIHVVP 148
Query: 102 -MDKCDLCADRRAQGK-LPACVSACPTDALKYGDINE 136
+DKC C +G PACV CP A +G +++
Sbjct: 149 HVDKCTFCYGTAPEGTYTPACVRTCPGHARVFGCLDD 185
>gb|AAK42907.1| Oxydoreductase, putative [Sulfolobus solfataricus]
Length = 293
Score = 79.6 bits (193), Expect = 2e-14
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 5 IFLDYRRCIACKACEVACEM--------------EHGEARI---------RVFEFPD--L 39
I D +C C C+++C+ +GE + V +P +
Sbjct: 48 IITDLNKCFGCGGCQMSCKEWNTSGMFGPLPDLNPYGELDVMFWLRVLYVEVGTYPQTKV 107
Query: 40 TSIPFNCRHCERAPCLEVCPTGALY-RDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEA 98
+IP NC HC APC EVCP GA + R D V D +CIG C ACP+G D
Sbjct: 108 YNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYGNRFFDYV 167
Query: 99 NKIMDKCDLCADR------RAQGKLPACVSACPTDALKYGDI 134
+ KC C DR + ++PAC+ C A + +I
Sbjct: 168 EGVTKKCTHCFDRIYDPTLPPEERIPACIHGCMVQARIWANI 209
>sp|P23481|HYFA_ECOLI HYDROGENASE-4 COMPONENT A >gi|538761|pir||C49749 hypothetical
protein 1(bcp 3' region) - Escherichia coli
>gi|147018|gb|AAB88563.1| (M63654) HyfA [Escherichia
coli] >gi|1799909|dbj|BAA16359.1| (D90876) similar to
[PIR Accession Number C49749] [Escherichia coli]
>gi|1805540|dbj|BAA16369.1| (D90877) similar to [PIR
Accession Number C49749] [Escherichia coli]
Length = 205
Score = 76.5 bits (185), Expect = 2e-13
Identities = 53/162 (32%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 12 CIACKACEVACEMEHG------EARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGALYR 65
C C C AC H R+ + + +T+ P C HCE APCL+VCP A+ +
Sbjct: 12 CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITA-PVVCHHCEEAPCLQVCPVNAISQ 70
Query: 66 DCDNAVAFDPLKCIGCLMCAVACPFGV----------------------PKLDEAN---- 99
D+A+ + CIGC +CAV CPFG K E N
Sbjct: 71 R-DDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQ 129
Query: 100 -----------KIMDKCDLCADRRAQGKLPACVSACPTDALK 130
+ KCDLC D +G PACV ACP AL+
Sbjct: 130 HALLRWEPGVQTVAVKCDLC-DFLPEG--PACVRACPNQALR 168
>pir||H65023 hypothetical 22.2K protein (bcp 3'region) - Escherichia coli
>gi|1788826|gb|AAC75534.1| (AE000335) hydrogenase 4 Fe-S
subunit [Escherichia coli K12]
Length = 218
Score = 76.5 bits (185), Expect = 2e-13
Identities = 53/162 (32%), Positives = 68/162 (41%), Gaps = 48/162 (29%)
Query: 12 CIACKACEVACEMEHG------EARIRVFEFPDLTSIPFNCRHCERAPCLEVCPTGALYR 65
C C C AC H R+ + + +T+ P C HCE APCL+VCP A+ +
Sbjct: 25 CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTITA-PVVCHHCEEAPCLQVCPVNAISQ 83
Query: 66 DCDNAVAFDPLKCIGCLMCAVACPFGV----------------------PKLDEAN---- 99
D+A+ + CIGC +CAV CPFG K E N
Sbjct: 84 R-DDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQ 142
Query: 100 -----------KIMDKCDLCADRRAQGKLPACVSACPTDALK 130
+ KCDLC D +G PACV ACP AL+
Sbjct: 143 HALLRWEPGVQTVAVKCDLC-DFLPEG--PACVRACPNQALR 181
>sp|P20925|YFRA_PROVU FRD OPERON PROBABLE IRON-SULFUR PROTEIN A >gi|79027|pir||S00117
probable iron-sulfur protein A - Proteus vulgaris
(fragment) >gi|1333800|emb|CAA29509.1| (X06151) put.
OrfA' (AA 1-151) [Proteus vulgaris]
Length = 157
Score = 75.3 bits (182), Expect = 4e-13
Identities = 44/99 (44%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 46 CRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFG---------VPKLD 96
C CE APC VCP GA+ + D D KCIGC C +ACP+G + KL
Sbjct: 34 CHQCEDAPCANVCPNGAIIHNKDYYYV-DQDKCIGCKTCVLACPYGTMEVVSRPVMRKLT 92
Query: 97 EANKI------MDKCDLCADRRAQGKLPACVSACPTDAL 129
N I +KCDLC RA+G PACV CPT AL
Sbjct: 93 ALNTIEAFKAEANKCDLC-HHRAEG--PACVEVCPTQAL 128
>pir||B64925 probable iron-sulfur protein b1674 - Escherichia coli
>gi|1549285|gb|AAB47950.1| (U68703) hypothetical protein
[Escherichia coli] >gi|1742752|dbj|BAA15444.1| (D90810)
Respiratory nitrate reductase 1 b chain (EC 1.7.99.4).
[Escherichia coli] >gi|1787963|gb|AAC74744.1| (AE000262)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 208
Score = 75.3 bits (182), Expect = 4e-13
Identities = 42/142 (29%), Positives = 63/142 (43%), Gaps = 31/142 (21%)
Query: 11 RCIACKACEVAC-EMEHGE-----ARIRVFE---------------FPDLTSIPFNCRHC 49
RC C CE++C G +RI++ + DL CR C
Sbjct: 67 RCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQC 126
Query: 50 ERAPCLEVCPTGAL-YRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLC 108
+ C+ VCP GA+ ++ + + D +CIGC C ACP+ + ++ +K KC LC
Sbjct: 127 KEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLC 186
Query: 109 ADRRAQGKLPACVSACPTDALK 130
+ C +ACPT ALK
Sbjct: 187 GE---------CANACPTGALK 199
>gi|11498110 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7451593|pir||C69312
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650126|gb|AAB90738.1| (AE001069) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 269
Score = 74.1 bits (179), Expect = 9e-13
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 26/121 (21%)
Query: 42 IPFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGV-------PK 94
IP C HCE PC++VC T A ++ D V D +CIGC C +ACP+G P+
Sbjct: 114 IPLLCNHCEHPPCVQVCLTKASFKRPDGIVEIDMHRCIGCRYCMIACPYGARCFNFIDPR 173
Query: 95 --LDEANK--------IMDKCDLCADR------RAQGKLPACVSAC---PTDALKYGDIN 135
L E N +++KC C R + + +PACV AC AL +G+I
Sbjct: 174 EGLKEVNPNVQMRTEGVVEKCTFCVHRIDEAVKKGEEPIPACVEACHKYGKGALVFGNIK 233
Query: 136 E 136
+
Sbjct: 234 D 234
>gb|AAG23607.1|AF244658_1 (AF244658) carbon monoxide dehydrogenase [Carboxydothermus
hydrogenoformans]
Length = 128
Score = 73.7 bits (178), Expect = 1e-12
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 24/123 (19%)
Query: 4 KIFLDYRRCIACKACEVACEMEHGEARIRVFEF-----PDLTSI------PFN----CRH 48
K+ + C+AC +CEV+C + H + + P L + P N C+H
Sbjct: 3 KVIFNKNLCVACHSCEVSCSIIHSSEKSLISAIXEGIRPRLQIVIPPATKPENYHRQCKH 62
Query: 49 CERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMD---KC 105
C+RA C+E P GAL+ D + V KC GC +C ACPF A +++D KC
Sbjct: 63 CKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPF------HAIRVIDRCVKC 116
Query: 106 DLC 108
DLC
Sbjct: 117 DLC 119
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.142 0.473
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63386472
Number of Sequences: 2977
Number of extensions: 2633558
Number of successful extensions: 9377
Number of sequences better than 1.0e-10: 73
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 8998
Number of HSP's gapped (non-prelim): 139
length of query: 164
length of database: 189,106,746
effective HSP length: 45
effective length of query: 119
effective length of database: 162,174,831
effective search space: 19298804889
effective search space used: 19298804889
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)