BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1392 (hyfB) DE:HYDROGENASE-4 COMPONENT B (EC 1.-.-.-)
(647 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr... 1288 0.0
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||... 247 2e-64
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ... 222 7e-57
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py... 222 7e-57
gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlya... 219 6e-56
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab... 219 8e-56
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ... 215 1e-54
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s... 203 5e-51
pir||T51314 probable CO-induced hydrogenase complex chain CooM [... 199 1e-49
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI... 198 1e-49
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ... 198 1e-49
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys... 197 4e-49
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri... 195 2e-48
pir||S61395 probable Na+/H+-exchanging protein system component ... 194 3e-48
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r... 190 5e-47
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 184 2e-45
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus] 180 4e-44
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib... 175 2e-42
emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti] 173 6e-42
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 172 1e-41
sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|744... 171 3e-41
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ... 166 7e-40
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1] 164 2e-39
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 164 3e-39
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ... 164 4e-39
sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||... 162 1e-38
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab... 162 1e-38
pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Dei... 161 2e-38
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r... 160 5e-38
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh... 157 3e-37
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p... 156 8e-37
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu... 155 1e-36
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni... 154 3e-36
pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 153 4e-36
pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 153 4e-36
pir||B72619 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 153 4e-36
pir||H75060 hydrogenase (EC 1.-.-.-) 4 component D PAB1391 [impo... 152 9e-36
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni... 152 1e-35
sp|P77416|HYFD_ECOLI HYDROGENASE-4 COMPONENT D >gi|7466377|pir||... 150 6e-35
sp|Q56227|NQOC_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA... 148 2e-34
gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus... 146 5e-34
emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri] 146 9e-34
sp|Q9PMA7|NUOL_CAMJE NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 145 2e-33
gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus ... 144 3e-33
pir||B71640 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 143 6e-33
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis] 141 2e-32
gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU... 141 2e-32
sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 141 2e-32
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 141 3e-32
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 141 3e-32
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 140 4e-32
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil... 140 4e-32
pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli >... 140 5e-32
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 139 9e-32
gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1] 138 2e-31
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 138 2e-31
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 138 2e-31
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 138 3e-31
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 137 3e-31
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP... 137 3e-31
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse... 137 3e-31
pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium t... 137 3e-31
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib... 137 5e-31
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit... 136 6e-31
sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 136 8e-31
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 136 8e-31
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 135 1e-30
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 135 2e-30
emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 134 2e-30
gi|11466663 NADH dehydrogenase subunit 5 [Malawimonas jakobiform... 133 7e-30
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 132 9e-30
emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conse... 131 2e-29
pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 131 2e-29
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 131 3e-29
gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex me... 131 3e-29
gb|AAF08189.1| (AF130233) NADH dehydrogenase subunit F [Aquilegi... 130 4e-29
pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 129 8e-29
sp|P57262|NUOL_BUCAI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 129 8e-29
emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex... 129 8e-29
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi... 129 1e-28
gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex sc... 129 1e-28
gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays] 129 1e-28
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N... 129 1e-28
pir||T13074 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 129 1e-28
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh... 128 2e-28
gb|AAF78991.1| (L75864) NADH dehydrogenase F [Glomeropitcairnia ... 128 2e-28
gi|11467581 NADH dehydrogenase, subunit 5 [Allomyces macrogynus]... 128 2e-28
emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyce... 128 2e-28
pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 127 3e-28
gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]... 127 3e-28
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr... 127 3e-28
pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 127 3e-28
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi... 127 4e-28
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 127 4e-28
gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex de... 127 4e-28
gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica] 127 5e-28
gb|AAF25169.1|AF182341_1 (AF182341) NADH dehydrogenase [Buergers... 127 5e-28
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 126 7e-28
gb|AAA64772.1| (U21967) NADH dehydrogenase F [Bambusa stenostachya] 126 7e-28
pir||T13056 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 126 7e-28
pir||T12748 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 126 7e-28
gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex el... 126 7e-28
gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri] 126 7e-28
gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum... 126 7e-28
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus] 126 7e-28
gb|AAF78968.1| (L75862) NADH dehydrogenase F [Encholirium sp. MS... 126 7e-28
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (... 126 9e-28
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu... 126 9e-28
gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex pa... 126 9e-28
sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >... 125 1e-27
gb|AAF37199.1| (AF191810) NADH dehydrogenase subunit F [Carex ec... 125 1e-27
pir||F82822 NADH-ubiquinone oxidoreductase, NQO12 subunit XF0316... 125 1e-27
gb|AAK41284.1| Formate hydrogenlyase subunit 3 (hycC) [Sulfolobu... 125 1e-27
pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 125 1e-27
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 125 1e-27
gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia ... 125 1e-27
gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrasti... 125 1e-27
gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46... 125 2e-27
gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii] 125 2e-27
gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus] 125 2e-27
gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus] 125 2e-27
gb|AAD26243.1| (AF117426) NADH dehydrogenase [Sorghum leiocladum] 125 2e-27
gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense] 125 2e-27
gb|AAD26249.1| (AF117432) NADH dehydrogenase [Sorghum versicolor] 125 2e-27
gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex hu... 125 2e-27
sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 125 2e-27
gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesos... 125 2e-27
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p... 125 2e-27
pir||T13568 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 124 3e-27
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 124 3e-27
gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans] 124 3e-27
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 124 3e-27
gb|AAD26244.1| (AF117427) NADH dehydrogenase [Sorghum macrospermum] 124 3e-27
gi|7525082 NADH dehydrogenase ND5 [Arabidopsis thaliana] >gi|668... 124 3e-27
gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Protothec... 123 4e-27
gi|5835468 NADH dehydrogenase subunit 5 [Florometra serratissima... 123 4e-27
gb|AAF08154.1| (AF130198) NADH dehydrogenase subunit F [Angelica... 123 4e-27
gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia... 123 4e-27
pir||T12696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 123 6e-27
gb|AAA64780.1| (U21975) NADH dehydrogenase F [Zoysia matrella] 123 6e-27
gb|AAA64841.1| (U21976) NADH dehydrogenase F [Setaria viridis] 123 6e-27
gi|6137788 NADH dehydrogenase subunit 5 [Metridium senile] >gi|3... 123 6e-27
sp|Q9XAR5|NUOL_STRCO NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 123 6e-27
gb|AAG12214.1| (AF163448) NADH dehydrogenase subunit F [Carex ha... 123 6e-27
gb|AAG12215.1| (AF163449) NADH dehydrogenase subunit F [Carex le... 123 6e-27
gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum] 123 8e-27
gi|5835676 NADH dehydrogenase subunit 5 [Artibeus jamaicensis] >... 123 8e-27
gi|7335679 NADH dehydrogenase subunit 5 [Pupa strigosa] >gi|6683... 123 8e-27
gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba ... 123 8e-27
sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 122 1e-26
gi|11466311 NADH dehydrogenase subunit 5 [Cafeteria roenbergensi... 122 1e-26
emb|CAC17751.1| (AJ400892) NADH dehydrogenase subunit F [Deutzia... 122 1e-26
gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephr... 122 1e-26
gb|AAG28187.1|AF304200_11 (AF304200) NADH5 [Sus scrofa] 122 1e-26
gi|11610814 NADH dehydrogenase subunit 5 [Chalinolobus tubercula... 122 1e-26
gi|11466906 NADH-ubiquinone oxidoreductase subunit 5 [Podospora ... 122 1e-26
pir||T13685 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 122 2e-26
gb|AAF08150.1| (AF130194) NADH dehydrogenase subunit F [Lonicera... 122 2e-26
gi|11466188 NADH dehydrogenase subunit 5 [Naegleria gruberi] >gi... 122 2e-26
gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus] 122 2e-26
sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 121 2e-26
gb|AAD26247.1| (AF117430) NADH dehydrogenase [Sorghum stipoideum] 121 2e-26
gb|AAF08167.1| (AF130211) NADH dehydrogenase subunit F [Phlox dr... 121 2e-26
emb|CAB64787.1| (AJ236280) NADH dehydrogenase subunit F [Buxus s... 121 2e-26
emb|CAB65352.1| (AJ236254) NADH dehydrogenase subunit F [Philade... 121 2e-26
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos... 121 2e-26
gb|AAF75262.1| (AF257485) NADH dehydrogenase [Goyazia rupicola] 121 2e-26
emb|CAC04151.1| (AJ292983) NADH dehydrogenase subunit [Pseudonem... 121 2e-26
gi|9997011 NADH dehydrogenase subunit 5 [Tupaia belangeri] >gi|9... 121 2e-26
pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 2e-26
gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica] >gi... 121 2e-26
pir||S62707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 3e-26
pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 121 3e-26
gb|AAG28200.1|AF304201_11 (AF304201) NADH5 [Sus scrofa] >gi|1105... 121 3e-26
gb|AAF08175.1| (AF130219) NADH dehydrogenase subunit F [Eucnide ... 121 3e-26
emb|CAB65916.1| (AJ236262) NADH dehydrogenase subunit F [Petalon... 121 3e-26
emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreducta... 120 4e-26
prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsul... 120 4e-26
pir||T12295 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 120 4e-26
sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 120 4e-26
gb|AAF08151.1| (AF130195) NADH dehydrogenase subunit F [Symphori... 120 4e-26
emb|CAC07182.1| (AJ249410) NADH dehydrogenase [Lepidagathis ande... 120 4e-26
gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea] >... 120 4e-26
gb|AAF22402.1|AF047795_1 (AF047795) NADH dehydrogenase [Phacelia... 120 4e-26
gb|AAF22411.1|AF047804_1 (AF047804) NADH dehydrogenase [Romanzof... 120 4e-26
gb|AAF08156.1| (AF130200) NADH dehydrogenase subunit F [Osmorhiz... 120 4e-26
sp|P15958|NU5C_VICFA NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 120 5e-26
gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU... 120 5e-26
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 120 5e-26
gi|5835873 NADH dehydrogenase subunit 5 [Sus scrofa] >gi|7432531... 120 5e-26
emb|CAB65232.1| (AJ236261) NADH dehydrogenase subunit F [Mentzel... 120 5e-26
gb|AAG26159.1| (AF123811) NADH dehydrogenase subunit F [Saururus... 120 5e-26
emb|CAB39558.1| (AJ225079) putative NADH dehydrogenase [Stylidiu... 120 7e-26
gb|AAD26240.1| (AF117423) NADH dehydrogenase [Sorghum bulbosum] 120 7e-26
pir||T12151 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 119 9e-26
gb|AAF08864.1|AF194832_1 (AF194832) NADH dehydrogenase [Alluaudi... 119 9e-26
gb|AAG02011.1| (AF124557) NADH dehydrogenase [Globularia cordifo... 119 9e-26
emb|CAC17799.1| (AJ400895) NADH dehydrogenase subunit F [Platycr... 119 9e-26
pir||T13043 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 119 1e-25
pir||T13249 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 119 1e-25
emb|CAA05241.1| (AJ002189) NADH dehydrogenase subunit 5 [Sus scr... 119 1e-25
gb|AAF22401.1|AF047794_1 (AF047794) NADH dehydrogenase [Nama pus... 119 1e-25
emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocl... 119 1e-25
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;... 119 1e-25
gi|5835412 NADH dehydrogenase subunit 5 [Ceratotherium simum] >g... 118 1e-25
pir||T12220 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 1e-25
pir||T12160 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 1e-25
pir||T12124 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 1e-25
gb|AAD52739.1|AF123681_1 (AF123681) NADH dehydrogenase [Globular... 118 1e-25
gb|AAF08137.1| (AF130181) NADH dehydrogenase subunit F [Nymphoid... 118 1e-25
gb|AAF22387.1|AF047780_1 (AF047780) NADH dehydrogenase [Phacelia... 118 1e-25
gb|AAF22407.1|AF047800_1 (AF047800) NADH dehydrogenase [Ehretia ... 118 1e-25
emb|CAB64928.1| (AJ236252) NADH dehydrogenase subunit F [Decumar... 118 1e-25
emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocl... 118 1e-25
gb|AAD52736.1|AF123678_1 (AF123678) NADH dehydrogenase [Bartsia ... 118 1e-25
pir||T12670 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 2e-25
pir||T13561 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 2e-25
sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 118 2e-25
gb|AAF08123.1| (AF130161) NADH dehydrogenase subunit F [Nyctanth... 118 2e-25
gb|AAF08173.1| (AF130217) NADH dehydrogenase subunit F [Carpente... 118 2e-25
gb|AAF08882.1|AF194851_1 (AF194851) NADH dehydrogenase [Montia p... 118 2e-25
pir||T13686 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 2e-25
gb|AAF22417.1|AF047810_1 (AF047810) NADH dehydrogenase [Phacelia... 118 2e-25
emb|CAB64931.1| (AJ236265) NADH dehydrogenase subunit F [Davidia... 118 2e-25
gb|AAG28226.1|AF304203_11 (AF304203) NADH5 [Sus scrofa] 118 2e-25
pir||T13706 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 2e-25
pir||T12707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 118 2e-25
emb|CAB85653.1| (AJ238340) NADH dehydrogenase [Nephrophyllidium ... 118 2e-25
sp|P48919|NU5M_CANPA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 118 3e-25
gb|AAF22398.1|AF047791_1 (AF047791) NADH dehydrogenase [Nama jam... 118 3e-25
emb|CAB85647.1| (AJ238338) NADH dehydrogenase [Crispiloba disperma] 118 3e-25
gi|6691418 NADH dehydrogenase subunit 5 [Terebratulina retusa] >... 117 3e-25
gb|AAF08865.1|AF194834_1 (AF194834) NADH dehydrogenase [Basella ... 117 3e-25
gb|AAF22392.1|AF047785_1 (AF047785) NADH dehydrogenase [Hydrophy... 117 3e-25
gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris... 117 3e-25
gi|5835312 NADH dehydrogenase subunit 5 [Arbacia lixula] >gi|743... 117 4e-25
emb|CAB39543.1| (AJ225083) putative NADH dehydrogenase [Forstera... 117 4e-25
gb|AAF08155.1| (AF130199) NADH dehydrogenase subunit F [Coriandr... 117 4e-25
gb|AAF08855.1|AF194823_1 (AF194823) NADH dehydrogenase [Allionia... 117 4e-25
gb|AAF22409.1|AF047802_1 (AF047802) NADH dehydrogenase [Phacelia... 117 4e-25
emb|CAB85649.1| (AJ238339) NADH dehydrogenase [Cyphia rogersii] 117 4e-25
pir||T12697 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 117 4e-25
pir||T13377 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 117 4e-25
sp|Q32384|NU5C_HELAN NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 116 6e-25
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668... 116 6e-25
gb|AAF22394.1|AF047787_1 (AF047787) NADH dehydrogenase [Eriodict... 116 6e-25
gb|AAF22423.1|AF047816_1 (AF047816) NADH dehydrogenase [Turricul... 116 6e-25
pir||T13677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 6e-25
sp|Q32091|NU5C_CARTI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 116 7e-25
pir||T13485 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 7e-25
gb|AAF08884.1|AF194853_1 (AF194853) NADH dehydrogenase [Portulac... 116 7e-25
gb|AAF22372.1|AF047764_1 (AF047764) NADH dehydrogenase [Nama lob... 116 7e-25
gb|AAF22389.1|AF047782_1 (AF047782) NADH dehydrogenase [Nemophil... 116 7e-25
gb|AAF22396.1|AF047789_1 (AF047789) NADH dehydrogenase [Eriodict... 116 7e-25
gb|AAF22397.1|AF047790_1 (AF047790) NADH dehydrogenase [Eriodict... 116 7e-25
gb|AAF22408.1|AF047801_1 (AF047801) NADH dehydrogenase [Eriodict... 116 7e-25
gb|AAF22424.1|AF047817_1 (AF047817) NADH dehydrogenase [Phacelia... 116 7e-25
gb|AAF22427.1|AF047820_1 (AF047820) NADH dehydrogenase [Eriodict... 116 7e-25
emb|CAB85657.1| (AJ238334) NADH dehydrogenase [Alseuosmia macrop... 116 7e-25
pir||T13242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 7e-25
pir||T13373 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 7e-25
pir||T12213 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 7e-25
gi|5835440 NADH dehydrogenase subunit 5 [Dasypus novemcinctus] >... 116 1e-24
gb|AAF08145.1| (AF130189) NADH dehydrogenase subunit F [Scabiosa... 116 1e-24
gb|AAF22384.1|AF047776_1 (AF047776) NADH dehydrogenase [Codon sc... 116 1e-24
gb|AAF22425.1|AF047818_1 (AF047818) NADH dehydrogenase [Phacelia... 116 1e-24
gi|5834950 NADH dehydrogenase subunit 5 [Bos taurus] >gi|128778|... 116 1e-24
pir||T12705 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 1e-24
sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 116 1e-24
pir||T13040 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 1e-24
pir||T12189 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 1e-24
pir||T12714 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 1e-24
gb|AAA18610.1| (U08928) NADH dehydrogenase subunit [Salpiglossis... 115 1e-24
pir||T13757 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 1e-24
gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4... 115 1e-24
gb|AAF08863.1|AF194831_1 (AF194831) NADH dehydrogenase [Montia p... 115 1e-24
gb|AAF22388.1|AF047781_1 (AF047781) NADH dehydrogenase [Phacelia... 115 1e-24
gb|AAF22395.1|AF047788_1 (AF047788) NADH dehydrogenase [Eriodict... 115 1e-24
gb|AAF22406.1|AF047799_1 (AF047799) NADH dehydrogenase [Pholisto... 115 1e-24
gi|7580474 NADH dehydrogenase subunit 5 [Talpa europaea] >gi|685... 115 1e-24
emb|CAB85683.1| (AJ238345) NADH dehydrogenase [Wittsteinia vacci... 115 1e-24
emb|CAB87558.1| (AJ277384) NADH dehydrogenase [Roussea simplex] 115 1e-24
pir||T13404 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 2e-24
gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas american... 115 2e-24
emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare] 115 2e-24
emb|CAB39556.1| (AJ225075) putative NADH dehydrogenase [Phyllach... 115 2e-24
gb|AAF08117.1| (AF130155) NADH dehydrogenase subunit F [Justicia... 115 2e-24
gb|AAF22416.1|AF047809_1 (AF047809) NADH dehydrogenase [Nemophil... 115 2e-24
pir||T13765 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 2e-24
emb|CAB85660.1| (AJ238333) NADH dehydrogenase [Abrophyllum ornans] 115 2e-24
pir||T13038 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 2e-24
pir||T13493 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 115 2e-24
sp|P92699|NU5M_PONPA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 115 2e-24
gi|5835845 NADH dehydrogenase subunit 5 [Pongo pygmaeus abelii] ... 115 2e-24
gb|AAF22926.1|AF047778_1 (AF047778) NADH dehydrogenase [Phacelia... 115 2e-24
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M... 115 2e-24
gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea] >... 115 2e-24
gb|AAG34788.1| (AF207986) NADH dehydrogenase subunit F [Phlox pi... 115 2e-24
pir||T12694 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
pir||T13682 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
emb|CAB39541.1| (AJ225072) putative NADH dehydrogenase [Donatia ... 114 3e-24
gb|AAF27250.1|AF111773_1 (AF111773) NADH dehydrogenase [Waltheri... 114 3e-24
gi|5835006 NADH dehydrogenase subunit 5 [Balaenoptera musculus] ... 114 3e-24
sp|P51095|NU5C_ADEHI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 114 3e-24
sp|P51098|NU5C_ATHGR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 114 3e-24
pir||T12757 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
pir||T13085 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
pir||T13569 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
pir||T13764 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
gi|5835398 NADH dehydrogenase subunit 5 [Homo sapiens] >gi|66480... 114 3e-24
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 3e-24
emb|CAB39559.1| (AJ225078) putative NADH dehydrogenase [Stylidiu... 114 3e-24
gb|AAF08146.1| (AF130190) NADH dehydrogenase subunit F [Dipsacus... 114 3e-24
gi|9695383 NADH dehydrogenase subunit 4 [Phytophthora infestans]... 114 3e-24
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid... 114 3e-24
gb|AAF90048.1| (AF238062) NADH dehydrogenase subunit F [Schisand... 114 3e-24
pir||T13073 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 4e-24
pir||T13034 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 4e-24
pir||T13776 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 4e-24
sp|P51099|NU5C_ATRJA NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 114 4e-24
gi|5819104 NADH dehydrogenase subunit 5 [Balaenoptera physalus] ... 114 4e-24
pir||DNHUN5 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 4e-24
gi|5835167 NADH dehydrogenase subunit 5 [Pongo pygmaeus] >gi|250... 114 4e-24
sp|Q31849|NU5C_AMBTR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 114 4e-24
pir||T13063 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 114 4e-24
sp|Q32238|NU5C_FLARA NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 114 4e-24
gi|11466299 NADH dehydrogenase subunit 4 [Cafeteria roenbergensi... 114 4e-24
gb|AAF08854.1|AF194822_1 (AF194822) NADH dehydrogenase [Amaranth... 114 4e-24
gi|11466578 NADH dehydrogenase subunit 4 [Rhodomonas salina] >gi... 114 4e-24
pir||T12761 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
pir||T13247 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
pir||T13372 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
gi|11466847 NADH dehydrogenase ND4 [Oryza sativa] >gi|128732|sp|... 113 5e-24
pir||I80239 NADH dehydrogenase subunit 5 - human mitochondrion (... 113 5e-24
pir||T12699 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
pir||T13663 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
pir||T12128 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 5e-24
pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318... 113 5e-24
gb|AAG26151.1| (AF123803) NADH dehydrogenase subunit F [Ceratoph... 113 5e-24
pir||T13251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13683 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13067 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13378 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13705 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||T13774 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 6e-24
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N... 113 6e-24
pir||T13398 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 8e-24
pir||T13502 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 8e-24
pir||T13509 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 113 8e-24
pir||T13760 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 112 1e-23
gi|8573089 NADH dehydrogenase subunit 5 [Sciurus vulgaris] >gi|8... 112 1e-23
pir||T12701 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 112 1e-23
pir||T13698 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 112 1e-23
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3... 112 1e-23
pir||F70749 probable hycQ protein - Mycobacterium tuberculosis (... 112 1e-23
gi|5835775 NADH dehydrogenase subunit 5 [Orycteropus afer] >gi|7... 112 1e-23
gb|AAF77233.1| (AF200828) NADH dehydrogenase subunit 5 [Drosophi... 112 1e-23
gb|AAF77251.1| (AF200829) NADH dehydrogenase subunit 5 [Drosophi... 112 1e-23
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317... 112 1e-23
sp|P51097|NU5C_ASTCO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 111 2e-23
pir||T13245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 111 2e-23
gi|5835831 NADH dehydrogenase subunit 5 [Hylobates lar] >gi|2506... 111 2e-23
gi|9653270 NADH dehydrogenase subunit 5 [Physeter catodon] >gi|9... 111 2e-23
pir||T13051 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 111 2e-23
sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUI... 111 2e-23
gi|5835746 NADH dehydrogenase subunit 5 [Chrysemys picta] >gi|75... 111 3e-23
pir||S26025 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 110 4e-23
gi|5834883 NADH dehydrogenase subunit 5 [Ascaris suum] >gi|11718... 110 4e-23
pir||T12642 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 110 4e-23
pir||T13770 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 110 4e-23
gb|AAF06713.1|AF063080_1 (AF063080) NADH dehydrogenase [Rosenia ... 110 4e-23
emb|CAB64691.1| (AJ236239) NADH dehydrogenase subunit F [Alseuos... 110 6e-23
gi|9695393 NADH dehydrogenase subunit 5 [Phytophthora infestans]... 108 2e-22
gi|11467057 NADH dehydrogenase, subunit 4 [Acanthamoeba castella... 108 3e-22
gi|5835856 NADH dehydrogenase subunit 5 [Daphnia pulex] >gi|7432... 108 3e-22
sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 107 4e-22
gi|11465918 NADH dehydrogenase subunit 5 [Chlamydomonas eugameto... 106 6e-22
gi|5835259 NADH dehydrogenase subunit 5 [Locusta migratoria] >gi... 106 8e-22
sp|Q36428|NU5M_LOCMI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 106 8e-22
gi|5834894 NADH dehydrogenase subunit 5 [Caenorhabditis elegans]... 104 2e-21
gi|5835926 NADH dehydrogenase subunit 5 [Anopheles quadrimaculat... 102 1e-20
prf||2015259H NADH dehydrogenase:SUBUNIT=5 [Anopheles quadrimacu... 102 1e-20
gi|5835060 NADH dehydrogenase subunit 5 [Artemia franciscana] >g... 102 1e-20
gi|5836069 NADH dehydrogenase subunit 5 [Ornithorhynchus anatinu... 102 1e-20
pir||S60645 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 102 1e-20
sp|Q37710|NU5M_ARTSF NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 102 1e-20
gi|5836013 NADH dehydrogenase subunit 5 [Chelonia mydas] >gi|510... 102 1e-20
gi|11499414 F420H2:quinone oxidoreductase, 72.4 kDa subunit (nuo... 101 2e-20
sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 101 3e-20
gi|8395622 NADH dehydrogenase subunit 5 [Danio rerio] >gi|827269... 101 4e-20
gi|5835943 NADH dehydrogenase subunit 5 [Aythya americana] >gi|7... 101 4e-20
gi|5834868 NADH dehydrogenase subunit 5 [Phoca vitulina] >gi|128... 100 5e-20
sp|P29801|NU2C_SYNP7 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 100 8e-20
pir||S42820 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 99 1e-19
gi|5835048 NADH dehydrogenase subunit 5 [Didelphis virginiana] >... 99 1e-19
gi|5835733 NADH dehydrogenase subunit 5 [Corvus frugilegus] >gi|... 99 1e-19
pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 98 2e-19
gi|5834919 NADH dehydrogenase subunit 5 [Anopheles gambiae] >gi|... 96 2e-18
gi|5835524 NADH dehydrogenase subunit 5 [Branchiostoma lanceolat... 96 2e-18
gi|5835635 NADH dehydrogenase subunit 5 [Salmo salar] >gi|664763... 95 3e-18
gi|5835957 NADH dehydrogenase subunit 5 [Falco peregrinus] >gi|7... 95 3e-18
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s... 95 3e-18
gb|AAF61388.1|AF133701_11 (AF133701) NADH dehydrogenase subunit ... 94 5e-18
gi|5835029 NADH dehydrogenase subunit 5 [Cyprinus carpio] >gi|12... 93 8e-18
pir||T06260 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 93 8e-18
gi|5835915 NADH dehydrogenase subunit 5 [Salvelinus alpinus] >gi... 93 8e-18
gb|AAC60055.1| (U49048) NADH-ubiquinone oxidoreductase subunit 5... 93 1e-17
gi|5881423 NADH dehydrogenase subunit 5 [Branchiostoma floridae]... 92 1e-17
gi|11466061 NADH dehydrogenase subunit 4 [Pichia canadensis] >gi... 92 1e-17
pir||S74199 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 92 2e-17
pir||S75962 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 89 2e-16
gi|5834933 NADH dehydrogenase subunit 5 [Apis mellifera ligustic... 89 2e-16
pir||S52967 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 89 2e-16
sp|P48917|NU4M_HANWI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 87 6e-16
gi|10864682 NADH dehydrogenase subunit 5 [Gonostoma gracile] 83 9e-15
gi|5835703 NADH dehydrogenase subunit 5 [Rhipicephalus sanguineu... 80 6e-14
pir||T14235 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 78 2e-13
dbj|BAA87028.1| (AB027600) NADH dehydrogenase subunit 5 [Ornitho... 70 7e-11
>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
(strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 647
Score = 1288 bits (3296), Expect = 0.0
Identities = 647/647 (100%), Positives = 647/647 (100%)
Query: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY 60
MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY
Sbjct: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY 60
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF
Sbjct: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
Query: 121 VFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP 180
VFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP
Sbjct: 121 VFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP 180
Query: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG 240
NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG
Sbjct: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG 240
Query: 241 LIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIG 300
LIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIG
Sbjct: 241 LIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIG 300
Query: 301 IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWT 360
IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWT
Sbjct: 301 IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWT 360
Query: 361 GLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY 420
GLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY
Sbjct: 361 GLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY 420
Query: 421 TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYL 480
TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYL
Sbjct: 421 TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYL 480
Query: 481 NFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAEPWDCGASFIERDEYRVRAHHYYLKY 540
NFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAEPWDCGASFIERDEYRVRAHHYYLKY
Sbjct: 481 NFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAEPWDCGASFIERDEYRVRAHHYYLKY 540
Query: 541 EEKVGNFYAFGDWAYSVGASLVNAIVRFYVWIAKYFVKIVDTPYTKVRGVSDLRKHKVMY 600
EEKVGNFYAFGDWAYSVGASLVNAIVRFYVWIAKYFVKIVDTPYTKVRGVSDLRKHKVMY
Sbjct: 541 EEKVGNFYAFGDWAYSVGASLVNAIVRFYVWIAKYFVKIVDTPYTKVRGVSDLRKHKVMY 600
Query: 601 IDEELFLPFIRFLMVARNVLKCPSFDTLMTISLVLLLILLIFAGWGI 647
IDEELFLPFIRFLMVARNVLKCPSFDTLMTISLVLLLILLIFAGWGI
Sbjct: 601 IDEELFLPFIRFLMVARNVLKCPSFDTLMTISLVLLLILLIFAGWGI 647
>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
protein b2482 (bcp 3' region) - Escherichia coli (strain
K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
coli]
Length = 672
Score = 247 bits (625), Expect = 2e-64
Identities = 158/482 (32%), Positives = 258/482 (52%), Gaps = 31/482 (6%)
Query: 12 LFILGM------LGGLSKKAFKVSSAFAALASLSI-VALVFNLKPVEGKLLGLPVYIDGF 64
LF+LG+ L G++ V + + L V LV P + L + +D
Sbjct: 22 LFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTLVARFAP-PFEFADLTLRMDSL 80
Query: 65 SLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY--NAFLLSMFLILITSNLVWFVF 122
S +L++ +L SLYS+ YM + GK A+ + N F+ SM +L+ N WF+
Sbjct: 81 SAFMVLVISLLVVVCSLYSLTYMREYEGKG-AAAMGFFMNIFIASMVALLVMDNAFWFIV 139
Query: 123 FWELMTLSSFILIT--WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP 180
+E+M+LSS+ L+ D+ + G+ Y+ H + + I+ + GSLD ++
Sbjct: 140 LFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVL-IMIAFLLMGRESGSLDFASFR 198
Query: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG 240
L P A+ + +F F AK+G++P H W+P + APS+ S+L++G M KI +FG
Sbjct: 199 TLSLSPGLASAVFLLAFF-GFGAKAGMMPLHSWLPRAHPAAPSHASALMSGVMVKIGIFG 257
Query: 241 LIRIMYTALPT---PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
++++ L P G LV +GA++ +G LYAL E D K+LLA+ ++ +G I L
Sbjct: 258 ILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLYALAEQDIKRLLAWSTVENVGIILL 317
Query: 298 GIGI---GLSLDSPL-GALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGL 353
+G+ GLSL PL +G+ +FH LNH+LFKG LFL AG++ +++ +G L
Sbjct: 318 AVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKGLLFLGAGAIISRLHTHDMEKMGAL 377
Query: 354 AERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG---DMVLSFGAVLAVFISA 410
A+RM WT A L+ LAIS +PP NGF+S+W + + ++ + L +A+ + A
Sbjct: 378 AKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQSLFSLSRVEAVALQLAGPIAMVMLA 437
Query: 411 VT----LASFIKFYTSQFGG--ESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVP 464
VT + F+K Y F G S + EVP +M+V L+L++LC++I + + + P
Sbjct: 438 VTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNTMIVAMLLLAALCVLIALSASWLAP 497
Query: 465 LI 466
I
Sbjct: 498 KI 499
>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
>gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 510
Score = 222 bits (561), Expect = 7e-57
Identities = 146/445 (32%), Positives = 243/445 (53%), Gaps = 28/445 (6%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+D F I +LI+ ++ F A LYSI YM+ G E Y + L M I IT ++ F
Sbjct: 80 VDKFGAIMVLIITLVSFLAVLYSIEYMKHDTGLEKYYTLIL-ILELGMLGIAITGDIFNF 138
Query: 121 VFFWELMTLSSFILI-----TWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD 175
F E+M+++S+ L+ TW+ + GIKY + ++ L + + + Y G+L
Sbjct: 139 YVFLEIMSIASYALVAFRNDTWEA--IEAGIKYMFVGSLASSLVL-LGIALLYGQYGTL- 194
Query: 176 AMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAM 233
M Y +K P+ + + FL + KSG P H W+ + APS+IS++L+G +
Sbjct: 195 TMGYLAVKMSENPTIVAKIALSLFLGGLLFKSGASPVHMWLADAHPAAPSSISAMLSGLV 254
Query: 234 EKIA-VFGLIRIMYTA-LPTPK--SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
K+ ++ + R++++ LP ++G+LV + +TL VG A+ + D K+LLAY S+
Sbjct: 255 IKVGGIYAIARVVFSIFLPAINLATVGWLVIIFACITLIVGNAMAVVQEDMKRLLAYSSV 314
Query: 290 GQMGYIWLGIGIGL-SLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLD 348
GQ+GYI LG+GIG+ + S +G L + I+H +NH++ K LFL AG+V + G NL+
Sbjct: 315 GQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHAMMKALLFLVAGAVLHELGTRNLN 374
Query: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFI 408
L GLA+ M T A L+ + AI G+PP NGF SKWLIY + ++ S +A+
Sbjct: 375 ELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPIIGS----IAIIG 430
Query: 409 SAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINE 468
+A A++++ + FG +E+ + M++P IL +++GIFP I++
Sbjct: 431 TAFCTAAYVRVLFTFFGRPNEKVMRAKDPGALMLIPMFILVIAIILMGIFPW----QISD 486
Query: 469 PIGAPISTSLYLNFDSTAFSPLIFG 493
I P + +L+ D T++ + G
Sbjct: 487 KIMIPAARNLW---DITSYVMTLMG 508
>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
(strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
CO-induced hydrogenase related, subunit M [Pyrococcus
abyssi]
Length = 510
Score = 222 bits (561), Expect = 7e-57
Identities = 138/411 (33%), Positives = 224/411 (53%), Gaps = 21/411 (5%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+D F I +LI+ + F A LYS+ YM+ G E Y + L M I IT ++ F
Sbjct: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL-ILELGMLGIAITGDIFNF 138
Query: 121 VFFWELMTLSSFILI-----TWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD 175
F E+M+++S+ L+ TW+ + GIKY + ++F L + + + Y G+L
Sbjct: 139 YVFLEIMSIASYALVAFRHDTWE--GIEAGIKYMFVGSLASSFVL-LGIALLYGQYGTL- 194
Query: 176 AMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAM 233
M Y +K P+ + A FL + KSG P H W+ + APS+IS++L+G +
Sbjct: 195 TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLV 254
Query: 234 EKIA-VFGLIRIMYTAL---PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
KI ++ + R++++ P ++G+++ + +TL VG A+ + D K+LLAY S+
Sbjct: 255 IKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSV 314
Query: 290 GQMGYIWLGIGIGL-SLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLD 348
GQ+GYI LG+GIG+ + S +G + + I+H +NH+L K LFL AG V + G NL+
Sbjct: 315 GQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLN 374
Query: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFI 408
L GLA+ M T A L+ + AI G+PP NGF SKWLI Y S + +A+
Sbjct: 375 ELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI----YESSALFNPLLGAIAIIG 430
Query: 409 SAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
+A A++++ + FG SE+ + +M++P IL + +G+FP
Sbjct: 431 TAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
>gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlyase integral membrane subunit
[Desulfitobacterium dehalogenans]
Length = 637
Score = 219 bits (553), Expect = 6e-56
Identities = 145/497 (29%), Positives = 261/497 (52%), Gaps = 30/497 (6%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWV--YAVAYNAFLLSMFLILITSNLVW 119
DG + F+ +L + ASLY + YM+ + GK+ + +++++ AFL SM +L+ +N +
Sbjct: 49 DGLTAFFLFLLFLGQGVASLYGLGYMKEYEGKKSLISFSLSWVAFLGSMAGVLLVNNGFY 108
Query: 120 FVFFWELMTLSSFILITWDEKDFD---PGIKYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
F+F WELM+L SF L+ ++ ++ Y++ H+ T F L ++ YS GS
Sbjct: 109 FLFLWELMSLFSFFLVVYEHEETSNRKAAFIYFVMTHVGTVF-LIAAVLYLYSKTGSFLY 167
Query: 177 MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKI 236
+ + S S ++ F K+G+VPFH W+P + VAPS +S+L++G M KI
Sbjct: 168 GDWAAIASELSPGEKIVSFYVFGGFGTKAGLVPFHIWLPYAHPVAPSPVSALMSGVMVKI 227
Query: 237 AVFGLIRIMYTAL-PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYI 295
A++ ++R+++ L P G L+ LG ++ +G LYA E + K+LLAY ++ MG +
Sbjct: 228 ALYMIMRLVWLTLAPMELWWGGLMLALGVLSAFIGILYACVERNVKRLLAYSTVENMGIL 287
Query: 296 WLGIGIGLSLDS----PLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLG 351
+ +G + + L L + A +H ++H LFK ++F++AG++ AT LD +G
Sbjct: 288 TMALGTAMIAQTLGYTELVVLALAAFFWHGVHHLLFKSNMFMAAGNIIQATHTKKLDQMG 347
Query: 352 GLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG--------DMVLSFGAV 403
GL ++M TGL ++ ++ ++ +PP GF +WL++ A + + ++L
Sbjct: 348 GLLKKMPRTGLWAMVGAVGLAALPPLGGFWGEWLLFHALWKTSIQVGGGLLKLMLPLILT 407
Query: 404 LAVFISAVTLASFIKFYTSQFGGESE--RYRDVSEVPLSMVVPQLILSSLCLIIGIFPAL 461
F+SA+ LA+ +K+++ F G++ E+P S V L L+I ++P
Sbjct: 408 ALAFVSALALATMVKWFSGAFLGQARTANAEKAQELPWSQTVSMGSSMMLTLLILLWPQG 467
Query: 462 VVPLINEPI-------GAPISTSLYLNFDSTAFSPLIFGLLIVTLAFGTYIGLE--PRGE 512
++ L++ PI + ++ SL F S S + +L++ L GT L R
Sbjct: 468 LLKLMSVPIQVLSYQSSSSLTDSLISPFFSDFLSLITPYILLLGLFSGTLYLLSGGKRRR 527
Query: 513 EAEPWDCGASFIERDEY 529
+ W+CG R +Y
Sbjct: 528 VSGTWNCGVPLTPRMQY 544
>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi (strain
Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
Length = 618
Score = 219 bits (552), Expect = 8e-56
Identities = 140/472 (29%), Positives = 237/472 (49%), Gaps = 52/472 (11%)
Query: 36 ASLSIVALVFNLKPVEGKLLGLPVYIDGFSL---------IFMLILGILGFSASLYSIPY 86
A + ++ L+ L P G+ + + + GF L IF +I ++G SA L +
Sbjct: 36 ALIPLIGLI-KLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVST 94
Query: 87 MERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGI 146
+ G EW++A+ L +F +LV F FWE+MT +SF+++ + +
Sbjct: 95 AK--DGYEWLFALMSLTGALGIFT---AQDLVVFFIFWEIMTFASFMMVLKFNRA--ASL 147
Query: 147 KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLL-------------L 193
KY++ + I+ + + +++G+ Y+ GS + +T+L +
Sbjct: 148 KYFL-LSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALI 206
Query: 194 YASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRI---MYTAL- 249
Y FL+AF K+G+ P H W P Y + +++ +G + K V+G I + MY L
Sbjct: 207 YLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLL 266
Query: 250 ------PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGL 303
+ + GY++A LG +T+ VG + A + D ++L AY SI Q+GYI +G+GIG
Sbjct: 267 IDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGT 326
Query: 304 SLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLA 363
SL G+ A I+HA++H+LFKG FL ++ Y TG+T + GGLAE+M +T
Sbjct: 327 SL-------GIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTM 379
Query: 364 TLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF-YTS 422
+A L+++G+PP GF SKWLI+ A + +L + F SA+ I+F Y
Sbjct: 380 AFIAILSLAGIPPLVGFASKWLIFEAVISQNLPIL---GGMVFFGSAIGFVYLIRFTYAV 436
Query: 423 QFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPI 474
FG D + PL + + IL +L ++ G+ P ++ +N G +
Sbjct: 437 WFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTV 488
>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
>gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 617
Score = 215 bits (542), Expect = 1e-54
Identities = 147/481 (30%), Positives = 242/481 (49%), Gaps = 53/481 (11%)
Query: 28 VSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL---------IFMLILGILGFS 78
V + L ++ +A + L P + + + GF L +F +I ++G S
Sbjct: 26 VRESLGILGAIVPLAFLIKLYPSLDHPIRATISLGGFELGFSMSHLNWVFSMIAAVVGLS 85
Query: 79 ASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWD 138
A ++ + + EW++++ L +F+ +LV F FWE+MT SSF+++
Sbjct: 86 A-VFGMASTAKD-SYEWLFSLMSLTGALGIFM---AQDLVTFFIFWEVMTFSSFMMVLKF 140
Query: 139 EKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL---DAMTY----PNLKSLPSSATL 191
+ +KY I + I+ + + +++G+ Y+ G+ D + L L +T
Sbjct: 141 NRA--ASLKYLI-LSIIGAYSMLVAIGIIYAKTGTFTFADISAFFRKEAMLAMLGGKSTF 197
Query: 192 ------LLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRI- 244
L+Y FL+AF K+G+ P H W P Y + +++ +G + K V+G I +
Sbjct: 198 SRFDMALIYLLFLMAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKTGVYGFILLY 257
Query: 245 --MYTAL--------PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGY 294
MY L TP GY++A LG +T+ +G + A + D +KL AY SI Q+GY
Sbjct: 258 VLMYGKLLIDLGQFKGTPL-FGYIIAFLGGLTIIIGGVLAALQEDIRKLFAYSSISQVGY 316
Query: 295 IWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLA 354
I +G+GIG SL G+ A I+HA++H+LFKG FL ++ Y TG+T + GGLA
Sbjct: 317 ILVGLGIGTSL-------GIEAAIYHAISHALFKGLFFLVVATIIYRTGKTEFKDFGGLA 369
Query: 355 ERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLA 414
E+M +T +A L+++G+PP GF SKWLI+ A + +L G +L F SA+
Sbjct: 370 EKMPFTFAMAFIAILSLAGIPPLVGFASKWLIFEAVISQKLPIL--GGML-FFGSAIGFV 426
Query: 415 SFIKF-YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAP 473
I+F Y FG D + PL + + IL +L ++ G+ P LV +N G P
Sbjct: 427 YLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMGILGTLNVVFGVAPGLVAKELNAIFGNP 486
Query: 474 I 474
+
Sbjct: 487 V 487
>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
>gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 626
Score = 203 bits (511), Expect = 5e-51
Identities = 160/584 (27%), Positives = 269/584 (45%), Gaps = 74/584 (12%)
Query: 8 LPLVLFILGMLGGL-SKKAFKVSSAFAALASLSIVALVFNLKPVEGK---LLGLPVYID- 62
LPLVL L + L SK ++K+ + LA L + VF LK + L GL + +
Sbjct: 6 LPLVLLTLSIFIYLVSKMSWKMGALLNFLAGLFTILYVFTLKVGTFEKLDLFGLNIQFEW 65
Query: 63 -GFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFL----ILITSNL 117
S F + ++ S L+S ++E Y +YN FLL + + + ++L
Sbjct: 66 TNVSFYFSFVSLLVIVSVMLFSTKWLETQK-----YRASYNMFLLMVTAGSLGVFMAADL 120
Query: 118 VWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD-- 175
+ FWE+ LSS +++ ++K+ + Y M + T+ ++Y G+L+
Sbjct: 121 ITLYVFWEIAVLSSLLIVPMEKKEARKAVVVYAVMSAVGTYAFLYGTFLAYQRYGTLNIH 180
Query: 176 AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEK 235
+ L + ++ A +AKSGI P H W+ T+ +AP+ SS+L+G K
Sbjct: 181 GIAQGMLNDTSIGFKMAVFLLLSAAGIAKSGIFPLHIWLRETHGLAPNAFSSVLSGQFIK 240
Query: 236 IAVFGLIRIM--------------YTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAK 281
+ + + ++ Y+ +P P Y++ LG V++ +GTL A+++ D K
Sbjct: 241 LGNYIFLLVLSVIPSLKVFSEVTVYSGIPLPN---YILIALGNVSIVIGTLMAIKQDDMK 297
Query: 282 KLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
L+AY S+ GYI +GIG + LG G+FH NH++ +F++ +V Y
Sbjct: 298 MLMAYSSVANGGYILIGIGT-------MDPLGFEGGMFHIFNHAVASAVIFMAFAAVIYR 350
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
T + +GGL +M T L L + ++++G+PP +GF+SKW+IY A G + +F
Sbjct: 351 TKTQKISEMGGLIHKMPVTFLVYLFSIISLAGIPPMSGFISKWMIYQALVRKGMFITAF- 409
Query: 402 AVLAVFISAVTLASFIKFYTSQFGGESER-YRDVSEVPLSMVVPQLILSSLCLIIGIFPA 460
LA F S + + F G+ R YRDV E P M+ P ++L + +G++P
Sbjct: 410 --LAFFGSIGSFLYVFRPLAGVFLGQLPRKYRDVKEAPAVMLTPMVLLVLISFFLGVWPF 467
Query: 461 LVVPLINEPIGAPISTS-----------LYLNFDSTAFSPLIFGLLIV--TLAFGTYI-- 505
++ I E I + + L F + L+FGL +V +A+ Y
Sbjct: 468 PILQAI-EKIRVDLDVAPSFKISDPENWLVKGFAGSWNPVLVFGLFLVGFIVAYILYSLF 526
Query: 506 -------GLEPRGEEAEPWD--CGASFIERDEYRVRAHHYYLKY 540
L P EE P + G FI Y +HY K+
Sbjct: 527 PRPKKVDLLAPHREEGTPINIYTGGEFI----YNPDLYHYNTKF 566
>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
(U65510) CooM [Rhodospirillum rubrum]
Length = 1265
Score = 199 bits (500), Expect = 1e-49
Identities = 144/482 (29%), Positives = 250/482 (50%), Gaps = 65/482 (13%)
Query: 13 FILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLIL 72
F L + G S +A V + A A+L++VA G L GL F LI
Sbjct: 241 FALFLFGRFSAQARAVGAIALATATLALVAARLE----SGDLGGL----------FALIF 286
Query: 73 GILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL--SMFLILITSNLVWFVFFWELMTLS 130
+G + ++YS+ YM+ G V + FL+ S+ + T++L F FWELMT
Sbjct: 287 AAIGLAVTVYSVGYMKHGHG---VNRYFFFLFLMIGSLIGVATTNHLGNFYLFWELMTWM 343
Query: 131 SFILITWDE--KDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY-PNLKSLPS 187
S++L+ ++ K G+KY++ + + + V ++ LG+ + P + +L
Sbjct: 344 SYLLVIHEQTAKALKAGMKYFLIC-ASGAYVMHFGILVLHAQLGTFEISEIAPCIGTLSP 402
Query: 188 SATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMY- 246
+ ++ A+FLI FMAK+G+ P + W+P + VAPS+IS ++G + K + G++++++
Sbjct: 403 ALAGVVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSISGPMSGILTKAGILGMVKLLFG 462
Query: 247 -------------TALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMG 293
L P G ++ LG +TL +G + A R++D K+LLAY ++ Q+G
Sbjct: 463 IFGVGALGQFGLFAGLSLP---GAVLVALGGITLLLGEVQAYRQTDIKRLLAYSTLAQIG 519
Query: 294 YIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGL 353
I + +G+G SL + G+FH NH++ K LF + G++ + +LD+L GL
Sbjct: 520 EITMVLGVGTSL-------ALAGGLFHVTNHAVMKTMLFFAVGALILRSAGRSLDDLKGL 572
Query: 354 AERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDM----VLSFGAVL-AVFI 408
+ M +TGL + LAI GVPPF GF+SK+L+ A +G + V+ G+V+ A++
Sbjct: 573 GKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILVGSVIGALYY 632
Query: 409 SAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP----ALVVP 464
+ V A F + YT V E PL+M + L+ + + G++P ++V+P
Sbjct: 633 ARVLRAVFFEPYTGP---------KVVEAPLTMRIALGALAGVVVFTGVYPDAALSVVMP 683
Query: 465 LI 466
++
Sbjct: 684 VV 685
Score = 172 bits (432), Expect = 1e-41
Identities = 136/494 (27%), Positives = 239/494 (47%), Gaps = 54/494 (10%)
Query: 10 LVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFM 69
+V++ILG K S+ A S++++AL + G L+ Y D S F
Sbjct: 718 VVVYILG----------KRSTVVAGSLSVAVMALA-----LAGILIQSGRY-DLLSFWFA 761
Query: 70 LILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
++ ++G LYSI YM H + + + + + + + +L F FWE+M+
Sbjct: 762 ALIVVVGAINLLYSIGYMA-HGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSS 820
Query: 130 SSFILITWDEK---DFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLK-SL 185
+ L+ E+ D G KY+I + +F LF+ + + + G+ + P S+
Sbjct: 821 WTLYLVIIHEETKDSLDEGTKYFIFNFVGASF-LFLGVAILAAKAGTFEMALLPQAALSM 879
Query: 186 PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIM 245
P + L + K+ +P AP+ +S ++ + K+ +G+++IM
Sbjct: 880 PVGWLAVSAGLILAGLLMKAAQLPLRIDYQMHPAPAPTPVSGYISAVLLKVGPYGVLKIM 939
Query: 246 YTA---------------LPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIG 290
+P P + V ++ A+T+ A+ ++ K+LL Y ++
Sbjct: 940 VALGAGGGLARIAGLGAWMPDPLVV---VQVIAALTVLYAGAMAVVQNGVKRLLIYSTVS 996
Query: 291 QMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNL 350
Q+GY+ LG+ +G ALG+ G+ H +NH + K LFL+AG + +LD+L
Sbjct: 997 QLGYVLLGLSLG-------SALGVAGGLMHFVNHMMLKDILFLAAGCILAQAHVHSLDDL 1049
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL +M T L A L++SG+PPFNGF SKWLIY + G +L+ A+++ S
Sbjct: 1050 GGLGRKMPITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLAMAALMS---SL 1106
Query: 411 VTLASFIKFYTSQF-GGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPAL-VVPL--I 466
TLA+ +KF S F G S + E P M++P +L++ +I+G+FP + +VP+ I
Sbjct: 1107 FTLAAVLKFTHSAFLGPLSPAAATMREAPPVMLIPMGLLAAGSVIVGVFPGVALVPISRI 1166
Query: 467 NEPIGAPISTSLYL 480
+G P+ + +L
Sbjct: 1167 QAALGLPVIEASWL 1180
Score = 70.6 bits (170), Expect = 5e-11
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 20/223 (8%)
Query: 259 VALLGAVTLTVGTLYALRE-SDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAG 317
+A GA + +G ALR D ++L Y +I ++GY+ +G+GIG A G
Sbjct: 7 LAWAGAALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGT-------AAGETGA 59
Query: 318 IFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPF 377
+ H ++ + + ++A + +G + LD L G ERM + L ++ G+ PF
Sbjct: 60 VMHLGYQAIMRALVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPF 119
Query: 378 NGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQ---FGGESERYRDV 434
G SK++I A +G + + AV A +A+F +T Q F +S
Sbjct: 120 KGSFSKFVILYAAIENG-----YWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGD 174
Query: 435 SEVPLSMV----VPQLILSSLCLIIGIFPALVVPLINEPIGAP 473
+P + +P ++L+ + +++ + P + L +G P
Sbjct: 175 KPIPFFQIPVGQLPIVVLALVTVVMSLDPDPFLMLAANAVGLP 217
>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
1.18.99.1) 3 chain 3 - Escherichia coli
>gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
Length = 608
Score = 198 bits (499), Expect = 1e-49
Identities = 146/483 (30%), Positives = 250/483 (51%), Gaps = 29/483 (6%)
Query: 28 VSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYM 87
V S + A A +++ + L+ V I + I+++ LG+ G SLY+I +
Sbjct: 41 VGSLYTAAAGFTVLTGAVGVSGALS-LVSYDVQISPLNAIWLITLGLCGLFVSLYNIDW- 98
Query: 88 ERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIK 147
RH + + N + + +I SNL FV E+M L + + +T + K+ K
Sbjct: 99 HRHAQVK-CNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEG----K 152
Query: 148 YYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP-NLKSLPSSATLLLYASFLIAFMAKSG 206
+ A+ L T L I+ + + G+LD ++ LP + + L +I F +G
Sbjct: 153 LWFALGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLG--VIGFGLLAG 210
Query: 207 IVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVT 266
I+P H WVP + A + ++L + + KI + G++ + P G + +LG +T
Sbjct: 211 IIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMIT 270
Query: 267 LTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIG---LSLDSP-LGALGMFAGIFHAL 322
VG LYAL E + ++LLAYH++ +G I LG+G G ++L+ P L ALG+ G++H L
Sbjct: 271 AFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLL 330
Query: 323 NHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
NHSLFK LFL AGSV + TG +++ LGG+ ++M +A L+ +A++ +PP NGF
Sbjct: 331 NHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAG 390
Query: 383 KWLIYTAGY---NSGDMVLS-FGAVLAVFIS---AVTLASFIKFYTSQFGG--ESERYRD 433
+W+IY + + NSG V G +LAV ++ A+ + K Y F G ++ +
Sbjct: 391 EWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN 450
Query: 434 VSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYLNFDSTAFSPLIFG 493
+ PL M V + L+ C+I G+ ++P+++ + P+ + ++T P+I
Sbjct: 451 ATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPA-----NTTVSQPMITL 505
Query: 494 LLI 496
LLI
Sbjct: 506 LLI 508
>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
>gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
coli]
Length = 608
Score = 198 bits (499), Expect = 1e-49
Identities = 146/483 (30%), Positives = 250/483 (51%), Gaps = 29/483 (6%)
Query: 28 VSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYM 87
V S + A A +++ + L+ V I + I+++ LG+ G SLY+I +
Sbjct: 41 VGSLYTAAAGFTVLTGAVGVSGALS-LVSYDVQISPLNAIWLITLGLCGLFVSLYNIDW- 98
Query: 88 ERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIK 147
RH + + N + + +I SNL FV E+M L + + +T + K+ K
Sbjct: 99 HRHAQVK-CNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEG----K 152
Query: 148 YYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP-NLKSLPSSATLLLYASFLIAFMAKSG 206
+ A+ L T L I+ + + G+LD ++ LP + + L +I F +G
Sbjct: 153 LWFALGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLG--VIGFGLLAG 210
Query: 207 IVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVT 266
I+P H WVP + A + ++L + + KI + G++ + P G + +LG +T
Sbjct: 211 IIPLHGWVPQAHANASTPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMIT 270
Query: 267 LTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIG---LSLDSP-LGALGMFAGIFHAL 322
VG LYAL E + ++LLAYH++ +G I LG+G G ++L+ P L ALG+ G++H L
Sbjct: 271 AFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLL 330
Query: 323 NHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
NHSLFK LFL AGSV + TG +++ LGG+ ++M +A L+ +A++ +PP NGF
Sbjct: 331 NHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAG 390
Query: 383 KWLIYTAGY---NSGDMVLS-FGAVLAVFIS---AVTLASFIKFYTSQFGG--ESERYRD 433
+W+IY + + NSG V G +LAV ++ A+ + K Y F G ++ +
Sbjct: 391 EWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN 450
Query: 434 VSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYLNFDSTAFSPLIFG 493
+ PL M V + L+ C+I G+ ++P+++ + P+ + ++T P+I
Sbjct: 451 ATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPA-----NTTVSQPMITL 505
Query: 494 LLI 496
LLI
Sbjct: 506 LLI 508
>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi (strain
Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
NADH-dehydrogenase related [Pyrococcus abyssi]
Length = 499
Score = 197 bits (495), Expect = 4e-49
Identities = 126/427 (29%), Positives = 223/427 (51%), Gaps = 28/427 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+G+ +D S + L+ +L F ++YS Y+ER G EW Y + Y + +L+T
Sbjct: 72 IGIVYEVDRLSSLIALVTAVLMFLIAIYSYRYLEREKGLEWYYTL-YLGLESGLLGVLLT 130
Query: 115 SNLVWFVFFWELMTLSSFILITW--DEKDFD-PGIKYYIAMHILTTFPLFISLGVSYSFL 171
+ E+ +++++ L+ + D KD G+KY + + TT F++LGV Y
Sbjct: 131 GDAFNLFVMIEVTSIAAYALVMFYRDRKDSVLAGLKYALIGAVGTTM-YFLALGVFYGTF 189
Query: 172 GSLDAMTYPNLKSLPSSATLLLYASFLI-----AFMAKSGIVPFHFWVPSTYKVAPSNIS 226
G+++ + L SS ++L +S + AF+ K+ I P HFW+P + APS IS
Sbjct: 190 GTVNFADLS--EKLHSSGNVVLASSVALVLATWAFLIKATIFPNHFWLPEAHPAAPSPIS 247
Query: 227 SLLAGAMEKIAVFGLIRIMYTALPTPKSI----GYLVALLGAVTLTVGTLYALRESDAKK 282
++L+G + + V+ +IR +YT I + + +LGA++ G L + D K+
Sbjct: 248 AILSGLVVNVGVYAMIRFLYTLYSGLSWIIGWLSFAIIILGAISSIFGALMMNTQRDVKR 307
Query: 283 LLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
L+AY +I MGY+ + +G+G L G+ A +FH +NH++ K LFL+ G +
Sbjct: 308 LVAYSTIMHMGYLLMAVGVGTQL-------GLQAALFHLINHAIAKALLFLAVGVFIHVA 360
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
G N+D+L GL +M T + +A+L++ G+PP N F SK L++ A F A
Sbjct: 361 GSRNIDDLAGLGRKMPITTFSLAIATLSLVGIPPLNVFFSKLLLFNALLEKS----FFLA 416
Query: 403 VLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALV 462
++ S + L ++++ + + G+ DV E +SM + LIL+ +C+ IG+ +V
Sbjct: 417 LVIAVTSVIALVAYMRVLYTLWLGKPREDLDVKE-SISMSMICLILALICIAIGLIAPIV 475
Query: 463 VPLINEP 469
+ + P
Sbjct: 476 LEKLINP 482
>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
Length = 608
Score = 195 bits (490), Expect = 2e-48
Identities = 145/483 (30%), Positives = 249/483 (51%), Gaps = 29/483 (6%)
Query: 28 VSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYM 87
V S + A A +++ + L+ V I + I+++ LG+ G SLY+I +
Sbjct: 41 VGSLYTAAAGFTVLTGAVGVSGALS-LVSYDVQISPLNAIWLITLGLCGLFVSLYNIDW- 98
Query: 88 ERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIK 147
RH + + N + + +I SNL FV E+M L + + +T + K+ K
Sbjct: 99 HRHAQVK-CNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCA-VFLTSNSKEG----K 152
Query: 148 YYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP-NLKSLPSSATLLLYASFLIAFMAKSG 206
+ A+ L T L I+ + + G+LD ++ LP + + L +I F +G
Sbjct: 153 LWFALGRLGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLG--VIGFGLLAG 210
Query: 207 IVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVT 266
I+P H WVP + A + ++L + + KI + G++ + G + +LG +T
Sbjct: 211 IIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAXLWWGIALLVLGMIT 270
Query: 267 LTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIG---LSLDSP-LGALGMFAGIFHAL 322
VG LYAL E + ++LLAYH++ +G I LG+G G ++L+ P L ALG+ G++H L
Sbjct: 271 AFVGGLYALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLL 330
Query: 323 NHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
NHSLFK LFL AGSV + TG +++ LGG+ ++M +A L+ +A++ +PP NGF
Sbjct: 331 NHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAG 390
Query: 383 KWLIYTAGY---NSGDMVLS-FGAVLAVFIS---AVTLASFIKFYTSQFGG--ESERYRD 433
+W+IY + + NSG V G +LAV ++ A+ + K Y F G ++ +
Sbjct: 391 EWVIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN 450
Query: 434 VSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYLNFDSTAFSPLIFG 493
+ PL M V + L+ C+I G+ ++P+++ + P+ + ++T P+I
Sbjct: 451 ATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPA-----NTTVSQPMITL 505
Query: 494 LLI 496
LLI
Sbjct: 506 LLI 508
>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
(strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
[Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
Na+/H+ antiporter [Bacillus halodurans]
Length = 804
Score = 194 bits (488), Expect = 3e-48
Identities = 147/485 (30%), Positives = 244/485 (50%), Gaps = 42/485 (8%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+ VY+DG SL+F L++ +G +LYSI Y+ + K + V F+ +M ++++
Sbjct: 70 INFTVYVDGLSLLFALLITGIGTLVALYSIYYLSKKTEKLNNFYVYLLMFMGAMLGVVLS 129
Query: 115 SNLVWFVFFWELMTLSSFILIT-WDEKDFDP-GIKYYIAMHILTTFPLFISLGVSYSFLG 172
NL+ FWEL +L+S +LI+ W ++ G + + + + F + + Y G
Sbjct: 130 DNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVITG 189
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMA--KSGIVPFHFWVPSTYKVAPSNISSLLA 230
+ ++TL L A L+ A KS PFH W+P + AP+ +S+ L
Sbjct: 190 TFSIREIIEQADAVLASTLFLPAMLLVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYLH 248
Query: 231 GA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
A M K ++ + R+ TP+ +L+A G +TL G++ A+R+ D K +LA+ +I
Sbjct: 249 SATMVKAGLYLVARLTPVFGGTPEWF-WLLAGFGIITLCWGSISAVRQKDLKSILAFSTI 307
Query: 290 GQMGYIWLGIGIGLSL------DSPLG--ALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
Q+G I G+G + DS + A A +FH +NH+ FKGSLF++ G +++
Sbjct: 308 SQLGLIMCLFGLGSATLHFDPTDSMIKFYATATLAAVFHLINHATFKGSLFMTVGIIDHE 367
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNS-------- 393
TG ++ LGGL M T +L+ A++G+PPFNGFLSK + ++ +
Sbjct: 368 TGTRDIRKLGGLMAIMPVTFTVSLIGLAAMAGLPPFNGFLSKEMFFSGVVTATTLGIFNM 427
Query: 394 ---GDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYR-DVSEVPLSMVVPQLILS 449
G + V +VF F + +T +F + E Y V E P+ M++ +IL
Sbjct: 428 ETWGFLFPVLAWVASVFTFVYCAIMFFRTFTGEF--KKENYDVHVHEAPMGMLISPVILG 485
Query: 450 SLCLIIGIFPALVVPLINEP-----IGAPI----STSLYLNFDSTAFSPLIFGLLIVTLA 500
SL +I G+FP L+ I EP +GA + ++YL F+P +F + I +A
Sbjct: 486 SLVVIFGLFPNLLTYTIIEPAVTAILGADVFGGGEANIYL---WHGFNPELF-MTIAVVA 541
Query: 501 FGTYI 505
FGT I
Sbjct: 542 FGTLI 546
>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
[Bacillus firmus]
Length = 805
Score = 190 bits (477), Expect = 5e-47
Identities = 136/443 (30%), Positives = 228/443 (50%), Gaps = 36/443 (8%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+ V++DG SL+F L++ +G LYSI Y+ + + V F+ +M ++++
Sbjct: 70 INFTVFVDGLSLLFALLITGIGTLVILYSIFYLSKKTESLNNFYVYLLMFMGAMLGVVLS 129
Query: 115 SNLVWFVFFWELMTLSSFILIT-WDEKDFDP-GIKYYIAMHILTTFPLFISLGVSYSFLG 172
NL+ FWEL +L+S +LI+ W ++ G + + + + F + + Y G
Sbjct: 130 DNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVMTG 189
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMA--KSGIVPFHFWVPSTYKVAPSNISSLLA 230
+ L +S+ L L A L+ A KS PFH W+P + AP+ +S+ L
Sbjct: 190 TFSIRGIIENVDLVTSSELFLPAMILVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYLH 248
Query: 231 GA-MEKIAVFGLIRIMYTALPTPKSIG-----YLVALLGAVTLTVGTLYALRESDAKKLL 284
A M K ++ + R+ TP G +L+ G VTL G+ A+R+ D K +L
Sbjct: 249 SATMVKAGIYLVARL------TPVFAGSAEWFWLLTGFGVVTLLWGSTSAVRQKDLKGIL 302
Query: 285 AYHSIGQMGYIW--LGIG-----IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGS 337
A+ ++ Q+G I LG+G G S+D + + A IFH +NH+ FKGSLF++A
Sbjct: 303 AFSTVSQLGLIMTLLGLGSAAIYFGESVDPAFYSFAIMAAIFHLINHATFKGSLFMTACI 362
Query: 338 VEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDM- 396
+++ TG ++ LGGL M T +L+ +++G+PPFNGFLSK + +TA + +M
Sbjct: 363 IDHETGTRDIRKLGGLMAIMPVTFTVSLIGLASMAGLPPFNGFLSKEMFFTALLRATEMN 422
Query: 397 ---VLSFGAVL-------AVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQL 446
+ +FG ++ +VF L F K +T +F E+ + V E P+ M++ +
Sbjct: 423 AFNMETFGIIIVVLAWIASVFTFLYCLIMFFKTFTGKFKPENYDVK-VHEAPIGMLISPV 481
Query: 447 ILSSLCLIIGIFPALVVPLINEP 469
IL SL ++ G FP ++ I EP
Sbjct: 482 ILGSLVIVFGFFPNILAYTIIEP 504
>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 568
Score = 184 bits (463), Expect = 2e-45
Identities = 145/484 (29%), Positives = 245/484 (49%), Gaps = 44/484 (9%)
Query: 9 PLVLFILGMLGGLS----KKAFKVSSAFAALASLSIVALVFNLKP-------VEGKLL-- 55
PL+ + L L+ K K+ A + +A++++ A+V ++ P VE +L
Sbjct: 6 PLLAVAVAGLAALAILFLNKREKLRDAVSPIAAVAMFAIVVSMAPTVLAGGTVELRLFEV 65
Query: 56 --GLPVYI--DGFSLIFMLILGILGFSASLYSIPYMER-HPGKEWVYAVAYNAFLLSMFL 110
G+ V + D ++F + +L A++YSI YM H + + + L +
Sbjct: 66 LPGIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSLAAAVG 125
Query: 111 ILITSNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSY 168
+NL V F+E+++L ++ L+ DE+ + KY + + + L +L ++Y
Sbjct: 126 GAFAANLFTLVIFYEVLSLVTYPLVYHHEDEEGWRGSRKYLVYLMGASKSVLLAALALTY 185
Query: 169 SFLGSLDAMTYPNLKSLPSSATLLLYASFLIAF-MAKSGIVPFHFWVPSTYKVAPSNISS 227
GSLD + L +SATLL F F AK+ ++P H W+P+ VAP+ +S+
Sbjct: 186 HIAGSLDFVRGGLLTGANASATLLTVVYFCYLFGFAKAAVMPMHAWLPAAM-VAPTPVSA 244
Query: 228 LL-AGAMEKIAVFGLIRIMYTALPTPK----SIGYLVALLGAVTLTVGTLYALRESDAKK 282
LL A A+ K+ VF ++R+++ +G A L + T+ + ++YAL D K
Sbjct: 245 LLHAVAVVKMGVFCVLRVIFHVFGVSTVGELGLGAATAYLVSFTILMASVYALTRDDLKA 304
Query: 283 LLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
LAY ++ Q+ YI LG + L L M GI H H+ K +LF AGS+ A+
Sbjct: 305 RLAYSTVSQLSYIVLGAVL-------LSPLAMVGGIIHIAAHAFSKITLFFCAGSIYCAS 357
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
G+ N+ ++ G+ R+ WT A +ASL++ G+PP GF+SKW + +G M A
Sbjct: 358 GKRNISDMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVEAGQM-----A 412
Query: 403 VLAVFI--SAVTLASFIKF-YTSQFGGESERYR-DVSEVPLSMVVPQLILSSLCLIIGIF 458
LAV + S + A F+ YT+ F E++ R V E+PL + +P + + L +++GIF
Sbjct: 413 FLAVLLASSVLNAAYFLPVSYTAFFEAETKESRAPVREIPL-VAIPLVATAILSVLMGIF 471
Query: 459 PALV 462
P V
Sbjct: 472 PYYV 475
>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
Length = 801
Score = 180 bits (452), Expect = 4e-44
Identities = 168/640 (26%), Positives = 287/640 (44%), Gaps = 89/640 (13%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFS 65
L++P+V+FI + + S + V N P G + +Y+DG
Sbjct: 35 LSVPIVIFIYML------------TLIKTTMSGNTVMKTLNWMPHFG--MNFDLYLDGLG 80
Query: 66 LIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLILITSNLVWFVFF 123
L+F L++ +G LYSI Y+ + G + Y + F+ +M ++++ N++ F
Sbjct: 81 LLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLL---FMGAMLGVVLSDNVIILYLF 137
Query: 124 WELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNL 182
WEL + SSF+LI+ W E+ Y A L I++ S LG + + P
Sbjct: 138 WELTSFSSFLLISFWRERQ----ASIYGAQK-----SLIITVFGGLSLLGGIILLAIPTQ 188
Query: 183 K----------SLPSSATLLLYASFLIAFMA--KSGIVPFHFWVPSTYKVAPSNISSLLA 230
S ++ ++A LI A KS PF+ W+P + AP+ +S+ L
Sbjct: 189 SFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAME-APTPVSAYLH 247
Query: 231 GAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIG 290
A A LI M + + V L+G +TL +L A ++ D K +LA+ ++
Sbjct: 248 SATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVS 307
Query: 291 QMGYIWLGIGIGLSL------DSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGE 344
Q+G I +GIG DS + A A IFH +NH+ FKG+LF+ G+V+++TG
Sbjct: 308 QLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGT 367
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLIYTAGYNSGDMV 397
++ LGGL M + T++ +L+++GVPPFNGFLSK + A S D +
Sbjct: 368 RDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTL 427
Query: 398 LSFGAVLAVFISAVTLASFIKFYTSQFGGE---SERYRDVSEVPLSMVVPQLILSSLCLI 454
++ + S T IKF F G+ + + EV + M++ IL++L ++
Sbjct: 428 GYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIV 487
Query: 455 IGIFPALVVPLINEPIGAPISTSLYLNFDSTAFSPL-----------IFG-LLIVTLAFG 502
G+FP ++ I EP + I+ ++ + + F L I G LLIVT ++
Sbjct: 488 FGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSY- 546
Query: 503 TYIGLEPRGEEAEPWDCGASFIERDEYRVRAHHYYLKYEEKVGNFYAFGDWAYSVGASLV 562
W ++R ++ +++Y + + N+ +Y S
Sbjct: 547 --------------W---VKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRN 589
Query: 563 NAIVRFYVWIAKYFVKIVDTPYT-KVRGVSDLRKHKVMYI 601
N ++ F I FV I P+ + VS +R +V +
Sbjct: 590 NLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIV 629
>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 498
Score = 175 bits (438), Expect = 2e-42
Identities = 132/487 (27%), Positives = 235/487 (48%), Gaps = 50/487 (10%)
Query: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY 60
M + L LP+V+ +L + F LS++ V NL G LL + +Y
Sbjct: 1 MTAIGLTLPVVISLLTAVA-----IFLAGRNRWLTNGLSVICSVINL--FTGALLTITIY 53
Query: 61 IDG------------FSLIFM---------LILGILGFSASLYSIPYMERHPGKEWVYAV 99
G F ++F+ ++ I+G + +Y+I + P +A+
Sbjct: 54 THGPASIAFGQWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHAL 113
Query: 100 AYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWD--EKDFDPGIKYYIAMHILTT 157
+ L ++ +T ++ ++E+M ++SF L+ D ++ D IKY + +++++T
Sbjct: 114 LH-VLLAGVYGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKY-VLLNLIST 171
Query: 158 FPLFISLGVSYSFLGSLD-AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPS 216
+S+G+ Y G+L+ A + +SL +L L AF K+ + P W+P+
Sbjct: 172 LVFLLSIGLLYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPA 231
Query: 217 TYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLG--AVTLTVGTLYA 274
+Y PS I +L A + K+ V+ L+R+ P S G+ LLG A+T+ G L A
Sbjct: 232 SYHTLPSAIVALFAALLTKVGVYALLRVFTLVFPLDGS-GWQPVLLGIAALTMLTGVLGA 290
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
+ D KK+L++H I Q+GY+ +G L++ +PL G IF+ ++H L KG+LFL
Sbjct: 291 ASQYDIKKILSFHIISQIGYMIMG----LAIYTPLAITG---AIFYVIHHILVKGNLFLI 343
Query: 335 AGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG 394
G + G T L LGG+ M W LLA+ +++G PP +GF K+L+ A +
Sbjct: 344 GGLIGRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAA- 402
Query: 395 DMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMV----VPQLILSS 450
L + A +A+ + +T+ S K + F ++ + S + +P L+L+
Sbjct: 403 --ELYWLAAIALLVGLLTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTL 460
Query: 451 LCLIIGI 457
L+IG+
Sbjct: 461 FSLVIGL 467
>emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti]
Length = 725
Score = 173 bits (434), Expect = 6e-42
Identities = 136/423 (32%), Positives = 218/423 (51%), Gaps = 29/423 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
L + +DGF+ +F ++ +G LY+ YM +A+ + AF+ SM ++++
Sbjct: 97 LNFTLRMDGFAWLFSALITAIGVLVVLYARYYMAEEDPVPRFFAL-FLAFMGSMLGVVLS 155
Query: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTT--FPLFISLGVSYSFLG 172
NL+ FWEL ++ SF+LI + + +A+ I T +F+ L + +G
Sbjct: 156 GNLILLAVFWELTSIVSFLLIGYWHHNAHARDAARMALTITGTGGLAMFVGLIIIGKIVG 215
Query: 173 S--LDAMTYPN--LKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
S LDA+ +++ P T+L+ L+ + KS PFHFW+P AP+ +S+
Sbjct: 216 SYELDAVLASGDAIRNHPLYGTVLVLV--LLGALTKSAQFPFHFWLPHAM-AAPTPVSAY 272
Query: 229 LAGA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
L A M K VF L+R + + ++ ++V L G TL +G +A+ + D K LLAY
Sbjct: 273 LHSATMVKAGVFLLVRF-WPVMAGTEAWFWIVGLAGLTTLLLGAYFAIFQQDLKGLLAYS 331
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL 347
+I +G I + LSL SPL A+ A +FH +NH+ FK SLF++AG +++ +G ++
Sbjct: 332 TISHLGLIT----VLLSLGSPLAAV---AAVFHIVNHATFKASLFMAAGIIDHESGTRDI 384
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIY-----TAGYNSGDMVLSFGA 402
LGGL M T ++AS A++GVP NGFLSK + + T N D V + A
Sbjct: 385 RRLGGLFHFMPITATLAMVASAAMAGVPLLNGFLSKEMFFAEAIETHLVNPLDTVTPYVA 444
Query: 403 VLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEVPLSMVVPQLILSSLCLIIGIFPA 460
+A AVT + ++F F G ++ R E P M P L CL++GI PA
Sbjct: 445 TIAGMF-AVTYS--LRFIHGVFFGRPPADLPRKPHEPPRWMRAPLDFLVLACLVVGIIPA 501
Query: 461 LVV 463
+
Sbjct: 502 QTI 504
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 172 bits (432), Expect = 1e-41
Identities = 147/439 (33%), Positives = 220/439 (49%), Gaps = 29/439 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYM-ERHP-GKEWVYAVAYNAFLLSMFLIL 112
+ L + +DG +F L++ +G LY+ Y+ E+ P G+ + + + F+ SM ++
Sbjct: 68 INLSLRLDGLGFLFALLILGIGLLVILYARYYLSEQEPMGRFFAFLLL---FMGSMLGVV 124
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSY--SF 170
+ NL+ + FWEL +LSSF+LI + D +A+ + L + GV
Sbjct: 125 LAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGGGGLALLAGVLLLGHI 184
Query: 171 LGSLDAMTYPNLKSLPSSATL--LLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
GS + L + L L+ L+ KS PFHFW+P AP+ +S+
Sbjct: 185 AGSFELTEVLAAGELIRAHALYPLVLILILLGVFTKSAQFPFHFWLPHAM-AAPTPVSAY 243
Query: 229 LAGA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
L A M K VF L R+ Y AL + YLV+L G VTL +G AL + D K LLAY
Sbjct: 244 LHSATMVKAGVFLLARL-YPALAGTEWFFYLVSLSGLVTLLLGAGMALFQHDLKGLLAYS 302
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL 347
+I +G I L G LDSPL + A +FH +NH+ FK SLF++AG +++ TG ++
Sbjct: 303 TISHLGLITLLFG----LDSPLSNV---AAVFHIINHATFKASLFMAAGIIDHETGSRDM 355
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIY--TAGYN---SGDMVLSFGA 402
+ G+ + + T + ++ASLA++GVP NGFLSK + + T N S + ++ A
Sbjct: 356 RLINGMWKYLPHTAVLAIVASLAMAGVPLLNGFLSKEMFFGETLSQNLLGSFNWLVPAVA 415
Query: 403 VLAVFISAVTLASFIKFYTSQFGGESERYRDV--SEVPLSMVVPQLILSSLCLIIGIFPA 460
LA S FI + F GE R E P M VP IL LCL++G+ PA
Sbjct: 416 TLAGVFSVAYSLRFI--HDVFFNGEPARLPKFPPHEPPRYMKVPVEILVFLCLLVGMLPA 473
Query: 461 -LVVPLINEPIGAPISTSL 478
V PL+ A + L
Sbjct: 474 YTVAPLLAAAASASLGGQL 492
>sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|7446811|pir||D70850
probable oxidoreductase subunit - Mycobacterium
tuberculosis (strain H37RV) >gi|3261515|emb|CAA16264.1|
(AL021428) hypothetical protein Rv0083 [Mycobacterium
tuberculosis]
Length = 640
Score = 171 bits (428), Expect = 3e-41
Identities = 126/433 (29%), Positives = 208/433 (47%), Gaps = 28/433 (6%)
Query: 54 LLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMER-HPGKEWVYAVAYNAFLLSMFLIL 112
L G+ + +D FM + G + Y I Y+ R H G+ V F+ +M L+
Sbjct: 42 LSGVHIELDRLGGFFMALTGAVAAPVGCYLIGYVRREHLGR--VPMAVVPLFVAAMLLVP 99
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIK----YYIAMHILTTFPLFISLGVSY 168
++ F+ WELM ++S IL+ + P ++ +Y M L + + L V
Sbjct: 100 AAGSVTTFLLAWELMAIASLILVLSEHAR--PQVRSAGLWYAVMTQLGFIAILVGLVVLA 157
Query: 169 SFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
+ GS + L ++ ++ L+ F +K+G+VP H W+P + APS +S+L
Sbjct: 158 AAGGS---DRFAGLGAVCDGVRAAVFMLTLVGFGSKAGLVPLHAWLPRAHPEAPSPVSAL 214
Query: 229 LAGAMEKIAVFGLIRIMYTAL-PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
++ AM + ++G++R L P P+ G + +G + G L A +D K+LLAY
Sbjct: 215 MSAAMVNLGIYGIVRFDLQLLGPGPRWWGLALLAVGGTSALYGVLQASVAADLKRLLAYS 274
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALG-----MFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
+ MG I L +G +L + GA G A + H + H+ FK F++AGSV AT
Sbjct: 275 TTENMGLITLALGAA-TLFADTGAYGPASIAAAAAMLHMIAHAAFKSLAFMAAGSVLAAT 333
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG---DMVLS 399
G +LD LGGLA RM T + +A+L G+P GF+S+WL+ + ++ D +++
Sbjct: 334 GLRDLDLLGGLARRMPATTVFFGVAALGACGLPLGAGFVSEWLLVQSLIHAAPGHDPIVA 393
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFG------GESERYRDVSEVPLSMVVPQLILSSLCL 453
LAV + A+ + T FG S + E P SM I + CL
Sbjct: 394 LTTPLAVGVVALATGLSVAAMTKAFGIGFLARPRSTQAEAAREAPASMRAGMAIAAGACL 453
Query: 454 IIGIFPALVVPLI 466
++ + P LV P++
Sbjct: 454 VLAVAPLLVAPMV 466
>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
>gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
to NADH dehydrogenase [Bacillus subtilis]
Length = 774
Score = 166 bits (416), Expect = 7e-40
Identities = 122/437 (27%), Positives = 218/437 (48%), Gaps = 27/437 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+ VYIDG L+F L++ +G +LYSI Y+ + + + V F+ +M +++
Sbjct: 43 INFTVYIDGLGLLFALLITGIGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAMLGVVLV 102
Query: 115 SNLVWFVFFWELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTFP----LFISLGVSYS 169
N++ FWEL +LSSF+LI W +++ +Y A +L T + + Y
Sbjct: 103 DNVMVLYMFWELTSLSSFLLIGYWYKREKS---RYGAAKSLLITVSGGLCMLGGFILLYL 159
Query: 170 FLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMA--KSGIVPFHFWVPSTYKVAPSNISS 227
S + L + L + A LI A KS PF+ W+P + AP+ +S+
Sbjct: 160 ITDSFSIREMVHQVQLIAGHELFIPAMILILLGAFTKSAQFPFYIWLPDAME-APTPVSA 218
Query: 228 LLAGA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
L A M K ++ + R + + ++V+L+G T+ G+ +A++++D K +LA+
Sbjct: 219 YLHSATMVKAGIYVIARFSPIFAFSAQWF-WIVSLVGLFTMVWGSFHAVKQTDLKSILAF 277
Query: 287 HSIGQMGYIWLGIGIGLSL----DSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
++ Q+G I +G+ + + + A IFH +NH+ FKGSLF++ G +++ T
Sbjct: 278 STVSQLGMIISMLGVSAAALHYGHTEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHET 337
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDM----VL 398
G ++ LGGL M T +L+ + +++G+PPFNGFLSK + +T+ V
Sbjct: 338 GTRDIRKLGGLMAIMPITFTISLIGTFSMAGLPPFNGFLSKEMFFTSMLRVTHFDLFNVQ 397
Query: 399 SFGAVLAVFI---SAVTLASFIKFYTSQFGGE---SERYRDVSEVPLSMVVPQLILSSLC 452
++G + +F S T +K F G + + E P+ M+VP +IL +L
Sbjct: 398 TWGVLFPLFAWIGSVFTFIYSMKLLFKTFRGNYQPEQLEKQAHEAPVGMLVPPVILVALA 457
Query: 453 LIIGIFPALVVPLINEP 469
+ + FP ++ + EP
Sbjct: 458 VSLFFFPNILSYSLIEP 474
>gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]
Length = 594
Score = 164 bits (412), Expect = 2e-39
Identities = 139/472 (29%), Positives = 216/472 (45%), Gaps = 37/472 (7%)
Query: 21 LSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLG---LPVYIDGFSLIFMLILGILGF 77
LS++ A A+ A + V LV + KL G + + +D FS + LI G++G
Sbjct: 22 LSRRTGHALGAVASAAVVPYVWLVATGAHLPVKLFGFHAILLNVDPFSTLMGLIFGLIGA 81
Query: 78 SASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILIT- 136
+ +YS Y + +A+ Y L + + + +FFWELM +S +L+
Sbjct: 82 AGVVYS--YASDAENIQTAFALGYVGTSLGA---VFAGDWLTLIFFWELMAATSTLLVWH 136
Query: 137 WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
+ K G +Y +A I T L ++ ++ G+ + P A +
Sbjct: 137 YGGKAVRAGFRYALAHGIGGTL-LLAAIIWQFAETGTFLFGSVPGGPETAGLAGSIAPVL 195
Query: 197 FLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIG 256
+ G V H W+P TY S L K V+GL R+ P+
Sbjct: 196 AALGIGVNVGFVGLHAWLPDTYPRPHIAASVFLCVFTTKTGVYGLYRVF------PEHGN 249
Query: 257 YLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFA 316
VA +G G + AL ++D ++LL+YH Q+GY+ G+GIG S L G FA
Sbjct: 250 MAVAYMGGAMAVFGAMMALFQNDMRRLLSYHIQSQVGYMVAGVGIG----SALAQAGAFA 305
Query: 317 GIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPP 376
H NH L+KG LF++AG + Y TGE L LGGLA M T A +A+L+ISG P
Sbjct: 306 ---HVFNHILYKGLLFMTAGVIVYRTGEERLPKLGGLAREMPITAGAFTVAALSISGFPG 362
Query: 377 FNGFLSKWLIYTAGYNSGDMVLSFG-----AVLAVFISAVTLASFIKF-YTSQFGGESER 430
FNGF+SK +I +A + +++ G VL + T SFIKF Y + F G +
Sbjct: 363 FNGFVSKGIIISASHYMHAPLVTVGEFTGLQVLLLLGGVGTFMSFIKFGYYAFFHGSYD- 421
Query: 431 YRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLI------NEPIGAPIST 476
V + + +++LCL G++P + ++ N P+G +T
Sbjct: 422 -GTVKDANRGQAAAMVAIAALCLGYGLYPEGLFGILPIDVTTNPPVGHVYTT 472
>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 493
Score = 164 bits (411), Expect = 3e-39
Identities = 105/407 (25%), Positives = 206/407 (49%), Gaps = 18/407 (4%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLS-MFLILIT 114
G+ + D F+ + +++ I+G + ++ + +E Y + FL++ + +T
Sbjct: 69 GIVLVADMFATMMIILSSIVGVACLFFAFQTISSE--RERYYFYPFYLFLIAGVNGAFLT 126
Query: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKY-YIAMHILTTFPLFISLGVSYSFLGS 173
+L F+E+M ++S+ LI + + Y+ +++ + + + YS G+
Sbjct: 127 GDLFNLFVFFEVMLIASYALIVLGGTKYQLRESFKYVVINVFASILFIVGVAYLYSVTGT 186
Query: 174 LD-AMTYPNLKSLPSSATLLLYAS-FLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
L+ A + L L + A FL+ F K + P +FW+P +Y P+ I++L G
Sbjct: 187 LNFADLAIRVAELEQQGVLNVIAILFLVVFGMKGALFPLYFWLPRSYYGPPAAIAALFGG 246
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTVGTLYALRESDAKKLLAYHSIG 290
+ K+ ++ +IR S + + L L T+ G L A+ + D K++L+YH I
Sbjct: 247 LLTKVGIYAIIRTFTLIFNHDPSFTHTIILALAGFTMFFGVLGAVSQFDFKRILSYHIIS 306
Query: 291 QMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNL 350
Q+GY+ +G+GI +PL G I++ +H + K +LFL AG+ E TG T L +
Sbjct: 307 QVGYMVMGLGIF----TPLALAG---AIYYIAHHIIVKAALFLFAGATEKITGTTELKKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + W +++++++G+PP +GF SK+ + AG+ G V+ +A+ +
Sbjct: 360 GGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAGFEEGRYVI---VTVALIVGL 416
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPL-SMVVPQLILSSLCLIIG 456
+TL S +K + F GE + +++P+ +++P L L +++G
Sbjct: 417 LTLFSMMKIFIYAFWGEQKHTEQQAKMPIGKLLLPIAPLVVLTIVLG 463
>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
>gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 495
Score = 164 bits (410), Expect = 4e-39
Identities = 135/498 (27%), Positives = 234/498 (46%), Gaps = 42/498 (8%)
Query: 6 LALPLV-LFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLL--------- 55
+ALPL+ F + +L + K L I VF GK +
Sbjct: 9 IALPLISAFFVPVLKQIKKSLIFPYLTLITLLQTGIAGWVFYEVYTTGKPILIYAGGWRP 68
Query: 56 --GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILI 113
G+ +YI F+ +F+LI+ I+ F SL+S+ ++ P + YA+ + +L ++
Sbjct: 69 PVGINLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEPIDK--YAMLFLLLMLGATGMIA 126
Query: 114 TSNLVWFVFFWELMTLSSFILITWDE--KDFDPGIKYYIAMHILTTFPLFISLGVSYSFL 171
T ++ F E+ ++++ L +++ + + +KY I I ++F L I + + Y
Sbjct: 127 TGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYMILGGIGSSFFL-IGVALIYGVT 185
Query: 172 GSLDAMTYPNLKS----LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
G+L+ S +P A + L + + ++ + P + W P Y+ AP I+
Sbjct: 186 GTLNMAQLAEFASAGKIMPVVAQVGL-SLIIFGLAVEAELFPLNAWAPDAYQAAPHPITV 244
Query: 228 LLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV--GTLYALRESDAKKLLA 285
+ + + K ++ + RI+Y L LL TLTV L ALR+ D K+++A
Sbjct: 245 MFSAFVVKAGLYAMARILYLLQKVNGWDSVLKLLLIMATLTVIFAELSALRQKDVKRMIA 304
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET 345
Y SIGQ+G I L +G G+ AG+FH LNH++ K +FL G V G T
Sbjct: 305 YSSIGQVGLIALAFSLGTQA-------GVDAGVFHMLNHAIVKTMMFLGVGYVGVMVGGT 357
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLA 405
+++ GL +RM T L+ + +++ GVP FN F SK+ I A +G + AVL
Sbjct: 358 RIEDFRGLGKRMPLTALSLSVGAISTVGVPLFNVFWSKFRIIVATIQAG---FVWPAVLV 414
Query: 406 VFISAVTLASFIK-FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI-IGIFPALVV 463
+F S V + + + F GE ER ++ +V L+L +L ++ IGI+P V
Sbjct: 415 LFASVVEAVYYFRLLHVMWFAGEGERIKE------GWIVVFLLLLALIIVGIGIYPTPVW 468
Query: 464 PLINEPIGAPISTSLYLN 481
++ + +Y+N
Sbjct: 469 EIVKRAGSDIFAVKVYIN 486
>sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||E65024 hypothetical
protein b2486 - Escherichia coli (strain K-12)
>gi|1616955|gb|AAB88568.1| (M63654) Hyf F [Escherichia
coli] >gi|1788831|gb|AAC75539.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805545|dbj|BAA16374.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE 3,
SUBUNIT 3). [Escherichia coli]
Length = 526
Score = 162 bits (406), Expect = 1e-38
Identities = 122/423 (28%), Positives = 199/423 (46%), Gaps = 35/423 (8%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYM-------ERHPGKEWVYAVAYNAFLLSM 108
GL ++IDG +F+ ILG++GF +YSI YM E P Y ++ FL +M
Sbjct: 67 GLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFHLFLFTM 126
Query: 109 FLILITSNLVWFVFFWELMTLSSFIL--ITWDEKDFDPGIKYYIAMHILTTFPLFISLGV 166
L++ ++NL+ E TLSS L I + KY I + F LF G
Sbjct: 127 LLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRSSLEAAWKYIIICTVGVAFGLF---GT 183
Query: 167 SYSFLGSLDAMTYPNL-----------KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVP 215
+ + M + L + LL + LI F K+G+ P H W+P
Sbjct: 184 VLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLMLLAFVFLLIGFGTKTGLFPMHAWLP 243
Query: 216 STYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSI--GYLVALLGAVTLTVGTLY 273
+ APS +S+LL+ + A+ LIR S L+ + G +++ V +
Sbjct: 244 DAHSEAPSPVSALLSAVLLNCALLVLIRYYIIICQAIGSDFPNRLLLIFGMLSVAVAAFF 303
Query: 274 ALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFL 333
L + D K+LLAY S+ MG + + +GIG G LG+FA + H LNHSL K LF
Sbjct: 304 ILVQRDIKRLLAYSSVENMGLVAVELGIG-------GPLGIFAALLHILNHSLAKTLLFC 356
Query: 334 SAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNS 393
+G+V G +L+ + G+ + M +T + +LA++G+PPFN FLS+++ TAG
Sbjct: 357 GSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLAR 416
Query: 394 GDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCL 453
+++ VL + + + LA ++ + + + ++ P +IL + L
Sbjct: 417 NHLLI---IVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMML 473
Query: 454 IIG 456
+G
Sbjct: 474 AMG 476
>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi (strain
Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
Length = 493
Score = 162 bits (405), Expect = 1e-38
Identities = 112/411 (27%), Positives = 207/411 (50%), Gaps = 24/411 (5%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+G+ +YI F+ +F+LI+ ++ F +++S+ ++ P + YA+ + +L ++ T
Sbjct: 70 VGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDK--YAMLFLLLMLGATGMIAT 127
Query: 115 SNLVWFVFFWELMTLSSFILITWDE--KDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
++ F E+ ++++ L +++ + + +KY + I ++F L I + + Y G
Sbjct: 128 GDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFL-IGVALLYGATG 186
Query: 173 SLDAMTYPNLK-SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
+L+ L S+ + A + ++ + P + W P Y+ AP I+ + +
Sbjct: 187 TLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSA 246
Query: 232 AMEKIAVFGLIRIMYTALPTP--KSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
+ K ++ + RI+Y S+ LV ++ +T+ L ALR+ D K+++AY SI
Sbjct: 247 FVVKAGLYAMARILYLLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDVKRMIAYSSI 306
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDN 349
GQ+G I L +G G+ AG+FH LNH++ K +FL G V G T L+
Sbjct: 307 GQIGLIALAFSLGTQA-------GVDAGVFHMLNHAIVKAMMFLGVGYVGITLGGTELEK 359
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
GL +RM T LA + +++ GVP FN F SK+ I A +G + A+L +F S
Sbjct: 360 FEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAG---FIWPAILVLFAS 416
Query: 410 AVTLASFIKF-YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
V + + +T F G ER ++ +V+ L+L+ L + IGI+P
Sbjct: 417 MVEAVYYFRLVHTMWFSGSGERVKEG-----WIVIFLLLLAVLVVAIGIYP 462
>pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Deinococcus
radiodurans (strain R1)
>gi|6458595|gb|AAF10453.1|AE001941_6 (AE001941)
NADH-ubiquinone/plastoquinone subunit, putative
[Deinococcus radiodurans]
Length = 814
Score = 161 bits (404), Expect = 2e-38
Identities = 127/424 (29%), Positives = 208/424 (48%), Gaps = 51/424 (12%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLILITSNLVW 119
DGFSL+F ++G++G A+LYS+ Y+ G+ + Y + + SM ++++ NLV
Sbjct: 72 DGFSLLFAALIGVIGTLATLYSVAYLSAGEKFGRFYPYLLCFGG---SMLGLVLSDNLVA 128
Query: 120 FVFFWELMTLSSFILI-TWDEKDF--DPGIKYYIAMHI----LTTFPLFISLGVSYSFLG 172
FWE+ +++SF+LI W + D +K ++ + L +S+ L
Sbjct: 129 LFGFWEMTSVTSFLLIGLWHTRSAARDGAVKAFLISALGGLGLLAAAAMLSIAGGSPNLS 188
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
LD +++ P LL L+A KS +PFH W+P+ + AP+ IS+ L A
Sbjct: 189 QLDLGA---VRASPLFVPALLCT--LLAAFTKSAQLPFHIWLPTAME-APTPISAFLHSA 242
Query: 233 ------MEKIAVFGLI---RIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKL 283
+ +A FGLI +++ + P LG +T+ G+ ALR++D K L
Sbjct: 243 TMVKAGVVLVAKFGLIFGTSALWSGITVP---------LGLLTMVWGSWLALRQTDLKAL 293
Query: 284 LAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG 343
LAY ++ Q+G + +SL A G FA H LNH+ FK +LF G +++ TG
Sbjct: 294 LAYSTVSQLGLL-------MSLYGLADAGGRFAATAHLLNHAAFKAALFFVVGIIDHETG 346
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGD---MVLSF 400
+ L L +M T + LLA+L+++G+PP GF+SK L Y +G V
Sbjct: 347 TRQIPYLQNLRRQMPVTFVIALLAALSMAGLPPLGGFVSKELFYENMLRAGPGFIAVAVL 406
Query: 401 GAVLAVFISAVTLASFIKFYTSQFGGESERYRD-----VSEVPLSMVVPQLILSSLCLII 455
G+ L + SA L+ F + E +D V E PL + +P +L+ L+
Sbjct: 407 GSALTLAYSARLLSIFFAPRSGLTPTRRELRQDALKAHVHEAPLGLTLPAGLLAGTALLF 466
Query: 456 GIFP 459
G++P
Sbjct: 467 GLWP 470
>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
[Bacillus firmus]
Length = 493
Score = 160 bits (400), Expect = 5e-38
Identities = 104/412 (25%), Positives = 206/412 (49%), Gaps = 28/412 (6%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS 115
G+ + D F+ + +++ I+G ++ + K + Y Y L + +T
Sbjct: 69 GIVLVADLFATMMVILASIVGVVCLFFAFQTISSEREKYYFYPF-YFFLLAGVNGAFLTG 127
Query: 116 NLVWFVFFWELMTLSSFILITWDEKDFDPGIKY-------YIAMHILTTFPLFISLGVSY 168
+L F+E+M ++S+ILI G KY Y+ +++ + + + Y
Sbjct: 128 DLFNLFVFFEVMLIASYILIVLG------GTKYQLRESLKYVVINVFASILFIVGVAYIY 181
Query: 169 SFLGSLD-AMTYPNLKSLPSSATLLLYAS-FLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
S G+L+ A + L + L + A FL+ F K G+ P +FW+P +Y P+ I+
Sbjct: 182 SITGTLNMADLAVKVGELEQTGVLNVIAVIFLVVFAMKGGLFPLYFWLPRSYFGPPAAIA 241
Query: 227 SLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+L G + K+ ++ ++R P L+ +L +T+ G L A+ + D K++L+
Sbjct: 242 ALFGGLLTKVGIYAIMRTFTLIFNHDPGFTHTLILILAGLTMFFGVLGAVSQFDFKRILS 301
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET 345
YH I Q+GY+ +G+GI L + I++ +H + K +LFL AG+ + TG T
Sbjct: 302 YHIISQVGYMVMGLGIYTQL-------AIAGAIYYIAHHIIVKAALFLFAGATQRITGTT 354
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLA 405
+L +GGL + W +++++++G+PP +GF SK+ + A + + ++ A +A
Sbjct: 355 DLKKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFALILAAILNENYII---AAVA 411
Query: 406 VFISAVTLASFIKFYTSQFGGESERYRDVSEVPL-SMVVPQLILSSLCLIIG 456
+ + +TL S +K + F GE + + + + +++P + L +L +I+G
Sbjct: 412 LAVGLLTLFSMMKIFIYAFWGEQKHTEEQANFKVGKLLLPIVPLVALTIILG 463
>pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rhodobacter
capsulatus >gi|3128268|gb|AAC16120.1| (AF010496)
NADH-quinone oxidoreductase chain 5 [Rhodobacter
capsulatus]
Length = 961
Score = 157 bits (394), Expect = 3e-37
Identities = 133/421 (31%), Positives = 208/421 (48%), Gaps = 25/421 (5%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
L L +DGF +F+ ++ +G +Y+ Y+ ++ V ++ + ++++
Sbjct: 71 LDLSFRMDGFVWLFVSLIFGIGSLVLIYARYYLSQNRSGAAVLRLS-DGLHRGHGPVVLS 129
Query: 115 SNLVWFVFFWELMTLSSFILIT-WDE-KDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
N++ V FWEL ++ S +LI W + + G + + + L +++ + +G
Sbjct: 130 GNILMLVVFWELTSILSSLLIGYWHQGQAARDGARMALIVTGAGGLCLLLAMILLGQIVG 189
Query: 173 SLDAMTYPNLKSLPSSATL--LLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLA 230
S D L + L L+ FLI KS +PFHFW+P AP+ +S+ L
Sbjct: 190 SHDLDRVLASGDLVRAHPLYPLVLGLFLIGCFTKSAQMPFHFWLPGAM-AAPTPVSAFLH 248
Query: 231 GA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
A M K VF L+R T +LV G TL +G A+ D K LLAY +I
Sbjct: 249 SATMVKAGVFLLVRFSPVLGQTDLWF-HLVTGTGMATLVLGAFLAIFRHDLKGLLAYSTI 307
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDN 349
+G I GIG GA+ A IFH LNH++FK SLF++AG +++ TG ++
Sbjct: 308 SHLGLITALAGIGSD-----GAI--LAAIFHLLNHAVFKASLFMAAGIIDHETGTRDMRR 360
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAG--YNSG---DMVLSFGAVL 404
LGGL M T ++AS A++GVP NGFLSK + + A +N+G D L + AVL
Sbjct: 361 LGGLRHAMPVTASLAIVASAAMAGVPLLNGFLSKEMFFAAAADWNNGSWLDNALPYWAVL 420
Query: 405 AVFISAVTLASFIKFYTSQFGG--ESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALV 462
A A ++A ++F S F G ++ R E P M P L +CL++GI P L
Sbjct: 421 A---GAFSVAYSLRFIASVFFGPVATDLPRSPHEPPALMRRPVEALVLICLLVGILPGLT 477
Query: 463 V 463
+
Sbjct: 478 L 478
>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
[Thermoplasma acidophilum]
Length = 635
Score = 156 bits (390), Expect = 8e-37
Identities = 151/565 (26%), Positives = 261/565 (45%), Gaps = 55/565 (9%)
Query: 9 PLVLFILGMLGGLSKKAFK--VSSAFAALASLSIVALVFNL--KPVEGKL-----LGLPV 59
PL+ F+L ++ G + + ++S F LA + V F + P+ + +
Sbjct: 14 PLIGFLLTLIIGKYYRRWSGAIASFFIFLAFIFSVITYFTVIKHPIYNSYTWFYNIDFGI 73
Query: 60 YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVW 119
YID +++ +++ + L++I YM+ P K VY F M ++I+SNLV
Sbjct: 74 YIDNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKH-VYFAETALFTAGMLGLVISSNLVL 132
Query: 120 FVFFWELMTLSSFILIT-WDEK-DFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL--D 175
FWEL+ L S++LI W K + K + + I + + Y L ++ D
Sbjct: 133 LFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVGDLSFIIGMSILYYSLINVTKD 192
Query: 176 AMTYPNLKSLPSSATLLL-------YASFLI-AFMAKSGIVPFHFWVPSTYKVAPSNISS 227
++ P L S SS + + A F++ A + KS P H W+P + P+ +S+
Sbjct: 193 PLSIPYLISNASSIAVAIGKVRLGIIAIFILGAAIGKSAQFPLHVWIPDAME-GPTTVSA 251
Query: 228 LL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
L+ A M V+ + R+ L Y VA++G+ T + L +D K++LAY
Sbjct: 252 LIHAATMVTAGVYLVARLFQVFLYAAPFAMYAVAIVGSFTALYAGIVGLVVNDVKRILAY 311
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGE-T 345
+I Q+GY+ IG L +G + + G+FH ++H++FK LF+SAG+ A +
Sbjct: 312 STISQLGYMLAAIG----LAPIIGGVAVSLGMFHLISHAIFKALLFMSAGAFLVAMMDLR 367
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLA 405
+ +GGL +RM T + SLA+ P +G+ SK I A YN LS L
Sbjct: 368 DAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSKDPIIFASYNYFTKSLSVAGFLP 427
Query: 406 VFI-----SAVTLASFIKFYTSQFGGE----SERYRDVSEVPLSMVVPQLILSSLCLIIG 456
+ TL +F F+ G +ER RD P+ ++P ++LS LI+G
Sbjct: 428 LLFLMTGSLLTTLYTFRMFFLVAVGKPRSTLAERARD---PPIVALLPLMVLSIFALILG 484
Query: 457 IFPALVVPLINEPIG-APISTSLYLNFDSTAFSPL-IFGLLIVTLAFGTYIGLEPRG-EE 513
++ + + +P S S+ +P+ I L I+ LA G ++ L G E+
Sbjct: 485 VWQVPFYSFVKPTLDLSPYSVSV-------PTAPIYITTLPIILLAIGFFVDLYIYGFEK 537
Query: 514 AEPWDCGASFIERDEYRVRAHHYYL 538
+ WD ++ Y++ + +Y+
Sbjct: 538 WKTWDISKTWY----YKLVKNKFYI 558
>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
>gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
dehydrogenase, hydrogenase anchor subunit CooM (cooM)
[Methanococcus jannaschii]
Length = 481
Score = 155 bits (389), Expect = 1e-36
Identities = 110/368 (29%), Positives = 183/368 (48%), Gaps = 28/368 (7%)
Query: 107 SMFLILITSNLVWFVFFWELMTL--SSFILITWDEKDFDPGIKYYIAMHILTTFPLFISL 164
S+ I++ ++ F+E++++ + + ++ E+ + G++Y I ++ L L
Sbjct: 112 SIAAIVLADDIFNLYVFFEIVSIVQAGLVFLSGTEEAYKAGLRYMIMGNVAAALML---L 168
Query: 165 GVSYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKS---GIVPFHFWVPSTYKVA 221
G+++ L S + ++K ++Y L+ + + G+ PFH Y +
Sbjct: 169 GIAF-LLASTGTLNITDMKHYLLVDNPMIYGGLLLLIVGLAYGAGLPPFHNVKADLYARS 227
Query: 222 PSNISSLLAGAMEKIAVFGLIRI---MYTALPTPKSIGYLVALLGAVTLTVGTLYALRES 278
IS++L K + GL+ I ++ L S ++ LG + + G + AL +S
Sbjct: 228 KGFISAMLQ-TYSKFVLVGLMIIILKLFNGLDYFASAHAVLIALGVLAMVFGVVMALLQS 286
Query: 279 DAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV 338
D KKLLAYH+I Q GY+ G+ +G L G+ AGIFHA+NH ++K +LFL A V
Sbjct: 287 DYKKLLAYHAISQGGYVATGLALGTPL-------GIVAGIFHAINHVIYKSALFLGAYIV 339
Query: 339 EYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
G +NL LGGL M L A LAISG+PPFNGF SKW++ A +
Sbjct: 340 SCKRG-SNLHKLGGLLPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQAAMQVNMPEI 398
Query: 399 SFGAVLAVFISAVTLASFIK----FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI 454
A++ + +S T S +K Y E+ + EVP V +L++LC+I
Sbjct: 399 ---AIIMIIVSIGTFVSMMKAFYLIYLKPVDEETLKEYQNKEVPKLAVFSLFVLTALCII 455
Query: 455 IGIFPALV 462
IG++P +V
Sbjct: 456 IGLYPDIV 463
>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
Length = 493
Score = 154 bits (385), Expect = 3e-36
Identities = 118/484 (24%), Positives = 224/484 (45%), Gaps = 39/484 (8%)
Query: 6 LALPLVLFILGM-LGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY---- 60
+A LV+ + G+ L SK + LA++ + F L +EG + ++
Sbjct: 14 VATGLVILLTGVFLSPQSKNILGYLATLGTLAAIFLTVKSFGLLTMEGFSVQYTIFSETL 73
Query: 61 -IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVW 119
ID S F L+ + S+ SI Y E E Y + A M ++ ++L+
Sbjct: 74 SIDALSQFFKLVFLAVALIVSIASIKYTENSDHTEEFYTLVLFA-TFGMMIVASANDLIL 132
Query: 120 FVFFWELMTLSSFILITWDEKD---FDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
+EL +L++F L +++++ + +KY++ + LF G+S+ + G+
Sbjct: 133 LFCAFELASLATFALAGFEKQNARSLEGAMKYFVIGSVSAALMLF---GLSFVY-GATGT 188
Query: 177 MTYPNLKSLPSSAT-----LLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
+ P + P T ++ F K +VPFH W P TY+ +PS +S+LLA
Sbjct: 189 TSIPLIAQNPGLLTGNPIGIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSPSVVSALLAA 248
Query: 232 AMEKIAVFGLIRIMYTALPT-PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIG 290
+K+ R+ AL ++ LL VT+T G + A+ ++ K++LAY S+
Sbjct: 249 GSKKMGFVAAFRVFIIALAALQPDWQFMFTLLAVVTMTFGNVVAVAQTSVKRMLAYSSLA 308
Query: 291 QMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEY-----ATGE- 344
Q GYI + + + + + GI + L H+ K F++A +V + TG
Sbjct: 309 QAGYIAMAFAV-------MTPVALAGGIMYTLAHAFMKAGAFIAAAAVVWMITSEKTGNL 361
Query: 345 ---TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
+LD+ GL +RM L + A++G+PP GF++K++++++ +G +++
Sbjct: 362 DIPDHLDSFRGLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFSSTIQAG---MTWL 418
Query: 402 AVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPAL 461
AV+A+ SA++L + + + E + +P L+ + L++G++P
Sbjct: 419 AVIAILNSALSLFYYARLVKYMYFMPPEGKTEKVSIPFPYAAALLVAVAGVLVMGLWPEP 478
Query: 462 VVPL 465
V L
Sbjct: 479 FVEL 482
>pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL1 -
Aquifex aeolicus >gi|2983742|gb|AAC07303.1| (AE000734)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 622
Score = 153 bits (384), Expect = 4e-36
Identities = 136/463 (29%), Positives = 231/463 (49%), Gaps = 42/463 (9%)
Query: 14 ILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILG 73
I+ +G F + A A+ S V L ++ P+ L L Y D S + L++
Sbjct: 34 IIASVGAGLTTLFSLVVALKAIHSPVHVKL-YDFLPIGNYTLSLGFYFDSLSSLMALVVT 92
Query: 74 ILGFSASLYSIPYMERHPGKEWVYAV-AY-NAFLLSMFLILITSNLVWFVFFWELMTLSS 131
+ +YSI YM GK WV+ AY + FL +M LI+++ NL+ F WE + L+S
Sbjct: 93 FVATLIFVYSIGYMRDEFGK-WVFKFYAYLSLFLFAMLLIVLSDNLLGIFFGWEGVGLAS 151
Query: 132 FILITW---DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSF--LGSLD-AMTYPNLKSL 185
++LI + +K + ++ I +F G+ YSF +L+ +P ++ +
Sbjct: 152 YLLIGYYHEQKKATKASFEAFVMNRIGDWLFIF---GIIYSFYLFKTLEITQIFPKVEEV 208
Query: 186 PSSA----TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFG 240
A T+LL+ + KSG P H W+P+ P+ +S+LL A M V+
Sbjct: 209 DKYALGVATMLLFGGAV----GKSGQFPLHTWLPNAM-AGPTPVSALLHAATMVAAGVYM 263
Query: 241 LIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIG 300
+ R+ TP+++ L+ L+GA+T+T+ L +D KK++A+ ++ Q+GY+++ +G
Sbjct: 264 VARLYPMFEATPQTLK-LIVLIGAITMTMAALAGAVHNDIKKIIAFSTMSQLGYMFVALG 322
Query: 301 IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLD--NLGGLAERMK 358
+G +FH H+ FK LFL+AG+V A D +GGL + M
Sbjct: 323 VG----------DKGGAMFHLTTHAFFKALLFLAAGAVITAFHHHLYDIFKMGGLKKYMP 372
Query: 359 WTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIK 418
T +A ++ +L+++GV PF+GF SK I + Y ++ G ++A FI+A +F +
Sbjct: 373 VTYVAFMIGALSLAGVFPFSGFWSKDRIVASMYEWSGVLGVLGTIVA-FITA--YYAFRE 429
Query: 419 FYTSQFGGESERY---RDVSEVPLSMVVPQLILSSLCLIIGIF 458
+ G E R +DV EV M VP +L L ++ G+F
Sbjct: 430 GFLVFHGRERWREIYDKDVHEVEGVMTVPMGLLGFLTVLTGLF 472
>pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL3 -
Aquifex aeolicus >gi|2983794|gb|AAC07352.1| (AE000737)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 644
Score = 153 bits (384), Expect = 4e-36
Identities = 136/463 (29%), Positives = 231/463 (49%), Gaps = 42/463 (9%)
Query: 14 ILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILG 73
I+ +G F + A A+ S V L ++ P+ L L Y D S + L++
Sbjct: 31 IIASVGAGLTTLFSLVVALKAIHSPIHVKL-YDFLPIGNYTLSLGFYFDSLSSLMALVVT 89
Query: 74 ILGFSASLYSIPYMERHPGKEWVYAV-AY-NAFLLSMFLILITSNLVWFVFFWELMTLSS 131
+ +YSI YM GK WV+ AY + FL +M LI+++ NL+ F WE + L+S
Sbjct: 90 FVATLIFVYSIGYMRDEFGK-WVFKFYAYLSLFLFAMLLIVLSDNLLGIFFGWEGVGLAS 148
Query: 132 FILITW---DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSF--LGSLD-AMTYPNLKSL 185
++LI + +K + ++ I +F G+ YSF +L+ +P ++ +
Sbjct: 149 YLLIGYYHEQKKATKASFEAFVMNRIGDWLFIF---GIIYSFYLFKTLEITQIFPKVEEV 205
Query: 186 PSSA----TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFG 240
A T+LL+ + KSG P H W+P+ P+ +S+LL A M V+
Sbjct: 206 DKYALGVATMLLFGGAV----GKSGQFPLHTWLPNAM-AGPTPVSALLHAATMVAAGVYM 260
Query: 241 LIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIG 300
+ R+ TP+++ L+ L+GA+T+T+ L +D KK++A+ ++ Q+GY+++ +G
Sbjct: 261 VARLYPMFEATPQTLK-LIVLIGAITMTMAALAGAVHNDIKKIIAFSTMSQLGYMFVALG 319
Query: 301 IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLD--NLGGLAERMK 358
+G +FH H+ FK LFL+AG+V A D +GGL + M
Sbjct: 320 VG----------DKGGAMFHLTTHAFFKALLFLAAGAVITAFHHHLYDIFKMGGLKKYMP 369
Query: 359 WTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIK 418
T +A ++ +L+++GV PF+GF SK I + Y ++ G ++A FI+A +F +
Sbjct: 370 VTYVAFMIGALSLAGVFPFSGFWSKDRIVASMYEWSGVLGVLGTIVA-FITA--YYAFRE 426
Query: 419 FYTSQFGGESERY---RDVSEVPLSMVVPQLILSSLCLIIGIF 458
+ G E R +DV EV M VP +L L ++ G+F
Sbjct: 427 GFLVFHGRERWREIYDKDVHEVEGVMTVPMGLLGFLTVLTGLF 469
>pir||B72619 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 APE1411
[similarity] - Aeropyrum pernix (strain K1)
>gi|5105094|dbj|BAA80408.1| (AP000061) 708aa long
hypothetical NADH dehydrogenase (ubiquinone) chain 5
[Aeropyrum pernix]
Length = 708
Score = 153 bits (384), Expect = 4e-36
Identities = 138/515 (26%), Positives = 236/515 (45%), Gaps = 68/515 (13%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSSAFAA-LASLSIVALVFNLKPVEGKLL----------- 55
L V+ +G L G+++++F + A L S + + L ++GK++
Sbjct: 29 LAAVVIAVGWLLGVTRESFYGWVSVAGILVSALLSTYLAKLVLIDGKIVHVGADSVWIPH 88
Query: 56 ---GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPG-KEWVYAVAYNAFLLSMFLI 111
G YIDG + + L++ + ++YSI YME G + + +++ F+ SM L+
Sbjct: 89 LGVGWGSYIDGLAAVMSLVVSWISLLIAVYSIKYMEGDWGFGRYFFMISF--FVGSMMLL 146
Query: 112 LITSNLVWFVFFWELMTLSSFILIT-W--DEKDF---DPGIK------YYIAMHILTTFP 159
++ NLV WE L+S+ LI W DE+D+ PG + ++ H
Sbjct: 147 VVADNLVLMFVGWEGTGLASYALIGHWYTDEEDYWVGRPGRRVLGTPMFFEPSHSAVRAI 206
Query: 160 LFISLGVSYSFLGSLDAMTYPNLKSLPSSATL---------------LLYASFLIAFMAK 204
LF +G +G S+P A+ L+ F + +AK
Sbjct: 207 LFTRIGDIGFLIGIAALYLTAGTLSIPELASTAHVWIAEFAAQGVLPLILLIFTLGALAK 266
Query: 205 SGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGY------ 257
S VPFH W+ T P+ +S+L+ A M K V+ ++R + + G
Sbjct: 267 SAQVPFHEWLV-TAMTGPTPVSALIHAATMVKAGVYFVLRFAPIIVAGALAAGAPEVLSG 325
Query: 258 ------LVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDS---- 307
L+A + +T + +L AL + K +LA+ + Q+GY+ L G + S
Sbjct: 326 VGSYFTLIAWIAVLTALLLSLMALVSDELKLILAFSTASQLGYMILAAAAGGVIASVLAG 385
Query: 308 ----PLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLA 363
L + AG+ H ++H++FK +LFL+AG V +A +DN+GG A MK T A
Sbjct: 386 GEALELAGEAVAAGLGHLVSHAVFKAALFLAAGWVIHAAHSRFIDNMGGFARYMKLTAAA 445
Query: 364 TLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIK-FYTS 422
LA L+++GVPP +GF +K + Y + ++ A+ A+ +A T I+ F+
Sbjct: 446 FWLAGLSLAGVPPLSGFFTKEEVVAIAYKAEPVIGGLAALTALLTAAYTARMIIRVFHLP 505
Query: 423 QFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGI 457
+ +S + + E P M+VP IL+ L +GI
Sbjct: 506 PYEEKSSGDKHLHEAPPLMLVPYTILALASLALGI 540
>pir||H75060 hydrogenase (EC 1.-.-.-) 4 component D PAB1391 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458894|emb|CAB50381.1| (AJ248287) HYDROGENASE-4
COMPONENT D (EC 1.-.-.-). [Pyrococcus abyssi]
Length = 486
Score = 152 bits (381), Expect = 9e-36
Identities = 128/459 (27%), Positives = 224/459 (47%), Gaps = 40/459 (8%)
Query: 10 LVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFM 69
L+L GML LS+ ++ V+ + P G++ G + +D S++
Sbjct: 43 LLLVSFGMLEFLSEGSYHVT---------------YLRTPTLGEVYG--IIVDPMSVLIG 85
Query: 70 LILGILGFSASLYSIPYMER-------HPGKEWVYAVAYNAFLLSMFLILITSNLVWFVF 122
++ + GF LYSI YM H K YA FL S + +S L+ +
Sbjct: 86 FVVALAGFLFLLYSIDYMSPRNSTHPVHKDKGRFYAWML-IFLGSTLGFIYSSTLLQLLV 144
Query: 123 FWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP 180
F+ELM+L+ + ++++ E K +I + L+ +L +S + L L +
Sbjct: 145 FFELMSLACWGVVSYYGTESAVRAAYKAFIIPNFGAVVGLYTALSISITKLHDLSLYS-- 202
Query: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA-MEKIAVF 239
L+ L + L+L+ +IA KS PF+ W+P + AP+ S+ L GA M ++ V+
Sbjct: 203 -LQGLDAHLKLVLFLGVMIAAFTKSAQFPFYSWLPDAME-APTPASAFLHGAAMIEMGVY 260
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
L RI+ P P+ Y++ L A+T + +Y + DAK+LLAY +I + G +++G+
Sbjct: 261 LLARIIQFMSPIPQEAFYVMLTLLAITQVLAIIYYPLQRDAKRLLAYSTISEAGIMYVGL 320
Query: 300 GIGLSLDSPLG-ALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMK 358
L + LG A G+ A +F NH+ KG FLSAG+ Y+ G +++ + G+ M
Sbjct: 321 -----LYALLGNAEGIQASMFQLFNHAFVKGLAFLSAGTFAYSFGTLDMEKIRGIRWSMP 375
Query: 359 WTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT--LASF 416
+ LA L ++G PPF F SK I + + +++ VL V I A + S
Sbjct: 376 VVAVGWFLALLGLAGAPPFGIFFSKAYIVMSSKLASQGFIAWIPVLLVLIDATVFFIVSV 435
Query: 417 IKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLII 455
+ T FG +E+ +++ + ++++ +ILS + +I
Sbjct: 436 LWLKTMLFGEPTEKREEITPLMKAVLLALIILSVVAPLI 474
>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
Length = 495
Score = 152 bits (380), Expect = 1e-35
Identities = 112/422 (26%), Positives = 204/422 (47%), Gaps = 31/422 (7%)
Query: 59 VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLV 118
V IDG S+ +L+ I+ L++ P + + + A ++ +F+ L + V
Sbjct: 75 VGIDGVSMPLILLNAIVIPFMILFTWKEEMESPNRFYGLILTMQAAVIGVFVAL---DFV 131
Query: 119 WFVFFWELMTLSSFILIT-WDEKD-FDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
F FWEL + F ++ W + K++I H+ + L G+ Y+ L
Sbjct: 132 VFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVMLLGIFGLFYTALNQTGV 191
Query: 177 MTYPNLKSLPSSATLL--------LYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
T+ +++ L + ++ + L F+AK PFH W+P Y AP+ S L
Sbjct: 192 PTF-DIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSWLPDAYSEAPTAGSIL 250
Query: 229 LAGAMEKIAVFGLIRIMYTALP---TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+ KI +GL RI LP +P+ + ++ LLG+V++ G L ALR+ D K+++A
Sbjct: 251 FI--LLKIGGYGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYGALLALRQKDLKRMIA 308
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET 345
Y S+ MGY+ LG + L L + +F +H L +F+SAG+++ A G
Sbjct: 309 YSSLSHMGYVILG-------SAGLVTLSVSGAMFQQFSHGLIMSIMFMSAGAIQTAAGTR 361
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLA 405
++ LGGLA++M +A ++ +A G+P GF++++L+ T + + L V+A
Sbjct: 362 IINELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLTFTFTN----LPVFVVIA 417
Query: 406 VFISAVTLASFI-KFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVP 464
+ VT + + FG +E+ DV ++ V +++ L L G+ P+ V+
Sbjct: 418 LLAIVVTAGYHLWAMQRAMFGVYNEKLGDVRDINSIQVFSMAVIALLVLYFGLNPSPVLD 477
Query: 465 LI 466
++
Sbjct: 478 MM 479
>sp|P77416|HYFD_ECOLI HYDROGENASE-4 COMPONENT D >gi|7466377|pir||C65024 hypothetical
protein b2484 - Escherichia coli (strain K-12)
>gi|1616953|gb|AAB88566.1| (M63654) Hyf D [Escherichia
coli] >gi|1788829|gb|AAC75537.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805543|dbj|BAA16372.1| (D90877) NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 5 [Escherichia coli]
Length = 479
Score = 150 bits (374), Expect = 6e-35
Identities = 135/491 (27%), Positives = 232/491 (46%), Gaps = 47/491 (9%)
Query: 1 MKGMELALPLVLFILGMLGGLS--KKAFKVSSAFAALASLSIVALVFNLKPVE------- 51
M+ + L L+ FI ++ S ++A + FAAL +L +++L+ +
Sbjct: 1 MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLT 60
Query: 52 ----GKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYM------ERHPGKEWVYAVAY 101
G + + ID S + + ++ LG ++YS Y+ H G YA
Sbjct: 61 LVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLL 120
Query: 102 NAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDP--GIKYYIAMHI----- 154
F+ +M ++++S L+ + F+E+ S+ LI++ + D +K + HI
Sbjct: 121 -VFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSALKALLITHIGSLGL 179
Query: 155 -LTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFW 213
L LF+ G +L AM+ L A L+Y L A KS +P W
Sbjct: 180 YLAAATLFLQTGTF-----ALSAMS-----ELHGDARYLVYGGILFAAWGKSAQLPMQAW 229
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + AP+ IS+ L A +M K+ V+ R + P IG + ++ VT+ G L
Sbjct: 230 LPDAME-APTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALVTILYGFL 288
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
L + D K+LLA+ +I Q+G W+ G+ LS+ L + I + +NH+ K F
Sbjct: 289 MYLPQQDMKRLLAWSTITQLG--WMFFGLSLSIFG--SRLALEGSIAYIVNHAFAKSLFF 344
Query: 333 LSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGY- 391
L AG++ Y+ G L L G+ + G+ +A+LAI+GVPPFNGF SK+ ++ AG+
Sbjct: 345 LVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGFA 404
Query: 392 -NSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE-SERYRDVSEVPLSMVVPQLILS 449
+ +L +L + S + A FI+++ G+ SE D + +P SM + ++L
Sbjct: 405 LSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVLI 464
Query: 450 SLCLIIGIFPA 460
+ LI + A
Sbjct: 465 VMSLISSVIAA 475
>sp|Q56227|NQOC_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NADH DEHYDROGENASE 1,
CHAIN 12) (NDH-1, CHAIN 12) >gi|7432503|pir||T11909 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 NQO12
[similarity] - Thermus aquaticus thermophilus
>gi|1279872|gb|AAA97949.1| (U52917) NADH dehydrogenase
I, subunit NQO12 [Thermus thermophilus]
Length = 606
Score = 148 bits (369), Expect = 2e-34
Identities = 124/436 (28%), Positives = 210/436 (47%), Gaps = 36/436 (8%)
Query: 54 LLGLP--VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLI 111
L G+P + +D S +LI+ +GF +Y+I YM PG +A +N F+ M +
Sbjct: 60 LPGIPFSLLLDNLSGFMLLIVTGVGFLIHVYAIGYMGGDPGYSRFFAY-FNLFIAMMLTL 118
Query: 112 LITSNLVWFVFFWELMTLSSFILITWDEKD---FDPGIKYYIAMHILTTFPLFISLGVSY 168
++ + WE + L+SF+LI + K+ D K +I I + + + +
Sbjct: 119 VLADSYPVMFIGWEGVGLASFLLIGFWYKNPQYADSARKAFIVNRI-GDLGFMLGMAILW 177
Query: 169 SFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMA---KSGIVPFHFWVPSTYKVAPSNI 225
+ G+L P LL + L+ F+ KS +P W+P P+ +
Sbjct: 178 ALYGTLSISELKEAMEGPLKNPDLLALAGLLLFLGAVGKSAQIPLMVWLPDAM-AGPTPV 236
Query: 226 SSLL-AGAMEKIAVFGLIR--IMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKK 282
S+L+ A M V+ + R +Y+ LP + Y +A++G +T G L A ++D KK
Sbjct: 237 SALIHAATMVTAGVYLIARSSFLYSVLP---DVSYAIAVVGLLTAAYGALSAFGQTDIKK 293
Query: 283 LLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
++AY +I Q+GY++L G+G + +FH H+ FK LFL++GSV +A
Sbjct: 294 IVAYSTISQLGYMFLAAGVG----------AYWVALFHVFTHAFFKALLFLASGSVIHAL 343
Query: 343 -GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK--WLIYTAGYNSGDMVLS 399
GE ++ +GGL + + T L+ +LA+ G+P +GF SK L T Y G +
Sbjct: 344 GGEQDVRKMGGLWKHLPQTRWHALIGALALGGLPLLSGFWSKDAILAATLTYPFGGVGFY 403
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
GA+L ++ +T ++++ F GE + E P M+ P +L+ ++ G +
Sbjct: 404 VGALL---VAVLTAMYAMRWFVLVFLGEERGHHHPHEAPPVMLWPNHLLALGSVLAG-YL 459
Query: 460 ALVVPLIN--EPIGAP 473
AL PL N EP P
Sbjct: 460 ALPHPLPNVLEPFLKP 475
>gb|AAK41287.1| NADH-Ubiquinone/plastoquinone related [Sulfolobus solfataricus]
Length = 440
Score = 146 bits (366), Expect = 5e-34
Identities = 126/469 (26%), Positives = 227/469 (47%), Gaps = 41/469 (8%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDG 63
+E L L++ I+ +G K K S +A+ + I ++ L P++ +I
Sbjct: 3 IEPILLLLIPIISNVGFFKLKLIKTLSVLSAVLTSIISIFLYFLAPIKNSFF----FITK 58
Query: 64 FSLIFMLILGILGFSASLYSIPYMERHPGK---EWVYAVAYNAFLLSMFLILITSN--LV 118
F+ F+L++ + ++LYS+ Y++ P K E +Y + N+F SM +I +N L+
Sbjct: 59 FTTFFLLVIASIYLLSTLYSMNYIK--PSKIVSERLYYILLNSFASSMLFTVIMNNYGLM 116
Query: 119 WFVFFWELMTLSSFILITWD--EKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
W EL T++S +LI + E + +Y I + T LF + + Y++
Sbjct: 117 WVGV--ELTTVTSALLIIAEASETSLEATWRYIIIVSAGVTLALFSIIFIYYNY----HT 170
Query: 177 MTYPNLKSLPSS--ATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAME 234
+T + + P + T L A LI F K+G+ P + W+P + APS IS+L +G +
Sbjct: 171 LTVTEILTKPENNIITKLAVALALIGFGTKAGVFPMYTWLPDAHSEAPSPISALFSGVLL 230
Query: 235 KIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGY 294
A + ++ ++Y P +I + L +T ++ Y + K++ AY +I M
Sbjct: 231 PAATY-VVYMVYQVNPLT-NIFVIFTTLSIITASIILTY---QWHIKRMFAYSTIENMNL 285
Query: 295 IWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLA 354
LG+ IG PLGA+ + L H+ K F S+G V GE ++N+GGL
Sbjct: 286 ALLGLTIG----QPLGAIILL------LAHAFGKAGAFYSSGIVLKVLGEKRIENIGGLH 335
Query: 355 ERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLA 414
++K T ++ LL+SLA++G PPF F+ ++ I G ++ + + IS T
Sbjct: 336 TKLKLTSVSLLLSSLAVTGTPPFATFIGEFFILQTLIQKGYII----EFILIVISLATAF 391
Query: 415 SFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVV 463
I + ++ ++R VSE P + L+ S + L++GI +++
Sbjct: 392 ISINYNVTKM-IFTQRELTVSEEPKLITFISLVSSIIPLVLGILLLVIL 439
>emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri]
Length = 639
Score = 146 bits (364), Expect = 9e-34
Identities = 140/521 (26%), Positives = 245/521 (46%), Gaps = 55/521 (10%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYME-----RHPGKEWVYAVAYNAFLLSMFL 110
G ID + + +LI+ I+G + L++ YM+ RH ++ ++ + FL +M
Sbjct: 114 GASFNIDPLAQLMILIVNIVGTAIILFATGYMDQYEEHRHLNRQKIFYFTMSFFLAAMNG 173
Query: 111 ILITSNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPL---FISLG 165
++++ L W FWEL TL SF+LI++ DE+ + G + ++++++ + I L
Sbjct: 174 LVMSDTLGWLYLFWELTTLCSFVLISYNMDEEGINNGFR-ALSLNLVGGVAMSIGIILLA 232
Query: 166 VSYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
+Y+ TY ++ +A L A I AKS +PFH W+ VAP+ +
Sbjct: 233 TNYNISSLTGIATYAGTDAVALAALALPVALLCIGGFAKSAQMPFHSWLLGA-MVAPTPV 291
Query: 226 SSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLL 284
S+LL + M VF +++++ T S+G +A+ G+ T + + AL + +AK++L
Sbjct: 292 SALLHSSTMVNAGVFLVVKLVPAYANT--SLGTAIAVYGSFTFVICSALALSQRNAKRVL 349
Query: 285 AYHSIGQMGYIWLGIGIGLSLDSPLG-ALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG 343
AY +I +G I GIG +PL A M +FHA++ KG LFL G +E+ G
Sbjct: 350 AYSTIANLGLIIASAGIG----TPLAVAASMMLILFHAIS----KGLLFLCTGEIEHTIG 401
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISG-----VPPFNGFLSKWLIYTAGYNSGDMVL 398
+++++ GL ++ A LL S+A G +PPF L+KW+ A N+ ++
Sbjct: 402 SRDIEDMSGLIKK------APLLTSIAALGMVSMLLPPFGVLLTKWVSMEAASNNPVVI- 454
Query: 399 SFGAVLAVFISAVTLASFIKFY-----TSQFGGESERYRDVSEVPLSMVVPQLILSSLCL 453
+ V SA+T + K+ TS + + PLS++ +I +S+
Sbjct: 455 ----IFIVLGSALTTVYYSKWLGTILSTSMDKNAVPHKKLETYFPLSVLGLSIIGTSI-F 509
Query: 454 IIGIFPALVVPLINEPIG-APISTSLYLNFDSTAFSPLIFGLLIVTLAFGTYIGLEPRG- 511
I I+ + P + + AP T F S + + LA I L +
Sbjct: 510 IFSIYDYFIRPQVEILLKVAPAVTGQAGQFTS-EIGAFAYAAIFAVLALAILIYLATKNM 568
Query: 512 ---EEAEPWDCGASFIERDEYRVRAHHYYLKYEE-KVGNFY 548
A + CG + +E+D R+ + YE+ V N Y
Sbjct: 569 FTPRTAGYYMCGENNLEKD--RLMFRNGLCSYEKCSVSNIY 607
>sp|Q9PMA7|NUOL_CAMJE NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|11254389|pir||F81251 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L Cj1568c [similarity]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968985|emb|CAB73556.1| (AL139079) NADH
dehydrogenase I chain L [Campylobacter jejuni]
Length = 596
Score = 145 bits (362), Expect = 2e-33
Identities = 134/475 (28%), Positives = 221/475 (46%), Gaps = 42/475 (8%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L P V F+ LS+K V + L +LS ++ L E + L +
Sbjct: 7 ISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAFCSLYLLFCNEAFNVSLFEWFAG 66
Query: 61 ------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
ID SL M ++GI+ YSI YM G +A F+ SM ++++
Sbjct: 67 VNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHDEGFNKFFAYL-GLFVFSMLFLVMS 125
Query: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFL--G 172
N + WE + L S++LI + K+ A + L + LG+ + +L G
Sbjct: 126 DNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAANEAFIMNRIADLGMLLGIFWLYLQAG 185
Query: 173 SLDA-MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-A 230
+L + +SL +A +L+ I M KS PFH W+ P+ +S+L+ A
Sbjct: 186 TLKYDEVFSMAQSLDHNALILIATCLFIGAMGKSAQFPFHTWLADAM-AGPTPVSALIHA 244
Query: 231 GAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
M V+ +IR +Y +P + Y++ALLGA AL D K+++AY +
Sbjct: 245 ATMVTAGVYLVIRASTLYDLVP---EVSYIIALLGAFVAIFAASMALVVRDLKRIIAYST 301
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGE-TNL 347
+ Q+GY+++ G LGA G+ +FH H+ FK LFL AG+V +A + ++
Sbjct: 302 LSQLGYMFVAAG--------LGAYGI--ALFHLATHAFFKSLLFLGAGNVMHAMNDKLDI 351
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLI----YTAGYNSGDMVLSFGAV 403
+GGL + +K T + + SLA++G+ PF GF SK LI + + ++ +VL A
Sbjct: 352 KKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILGYSFISFHHGIFLVLLIAAF 411
Query: 404 LAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIF 458
L F S L + F+T E + S++ L + P ++L+ +I G F
Sbjct: 412 LTAFYSFRLL--MLVFFTP--ARHDEHPHEASKIALLAMSPLMVLA---IIAGFF 459
>gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus solfataricus]
Length = 1148
Score = 144 bits (360), Expect = 3e-33
Identities = 125/460 (27%), Positives = 223/460 (48%), Gaps = 37/460 (8%)
Query: 59 VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKE----W-VYAVAYNAFLLSMFLILI 113
+ ++ F+ F++ + I+ +++YS+ YME +E W +Y Y F LSM ++
Sbjct: 83 IVVNNFNYPFIITIIIITLLSAIYSLRYMEHKFDEERKSSWGLYYALYTLFALSMLYTVL 142
Query: 114 TSNLVWFVFFWELMTLSSFILITW----DEKDFDPGIKYYIAMHILTTFPL--FISLGVS 167
++NL+ F E+ +SSF+LI D + + Y+I HI T L I +G+S
Sbjct: 143 STNLLELYIFLEISLISSFLLIALYGYGDRRRIS--LMYFIWTHIGTILLLASIIVIGLS 200
Query: 168 YSFLGS-LDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
+ +DA T+ N ++ S +L++ ++ K F+ W+P + AP+ IS
Sbjct: 201 TGSMNIYVDAYTFANYSTI--SYGILVFIIAVVGMFVKGAQAGFNIWLPYAHGEAPTPIS 258
Query: 227 SLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
LL+ M + +F +I I Y PT + + +T+ G + AL + D K+ LAY
Sbjct: 259 VLLSPNMVGLGIFVVI-IYYYLFPTMSFLAPIFIAWAIITMIYGGINALAQKDFKRFLAY 317
Query: 287 HSIGQMGYIWLGIGI----GLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
S+ QMGY+ LG I GLS +G+ A I ++H K LF+SAG+
Sbjct: 318 SSVSQMGYMLLGASIAFLSGLSNSIISLPIGILASILIYVSHGFGKAILFMSAGASITEL 377
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-WLIYTAGYNSGDM-VLSF 400
E N++ LGGL + +L + G+PP G +S+ LI++ G + ++ F
Sbjct: 378 NERNIEKLGGLYLSSPLHSTLAFIGALNLLGLPPTIGLISEALLIFSLGTILDKIGIVGF 437
Query: 401 GAVLAVFISAV-TLASFIKF-YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIF 458
++A + A+ T +++I + + + + G+ E +++ V +P L++ +I
Sbjct: 438 IVIVAFIMIAIGTSSAYIGYLFKTVYAGKKET-KNIDNVK-EYSIPMLLIGIFSIITFFI 495
Query: 459 PALVVPLINEPIGAPISTSLYLN---FDSTAFSPLIFGLL 495
P V P + + TSL+ N AF P++ L+
Sbjct: 496 PQYVSPSL-------VFTSLFSNSTILPFIAFLPVLGSLI 528
Score = 90.9 bits (222), Expect = 4e-17
Identities = 101/429 (23%), Positives = 189/429 (43%), Gaps = 48/429 (11%)
Query: 67 IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWEL 126
I L + L F +LYSI YM R Y + F+ SM +++ +N++ F+ WE
Sbjct: 591 ILALFVSSLSFFIALYSIGYM-REDNVLRRYWGFFGLFVTSMLSVVLANNVLLFIAGWEG 649
Query: 127 MTLSSFILITW----------------------DEKDFDPGIKYYIAMHILTTFPLFISL 164
+L+S+ LI++ K GI+ I + L L
Sbjct: 650 TSLASYGLISYWLDDNERNVVGDFGRRIFGIENVSKPTTSGIRALIFTRV-GDVGLLAVL 708
Query: 165 GVSYSFLGSLDAMTYPNLKSLPSSATLLLYAS------------FLIAFMAKSGIVPFHF 212
G S L S + + YP + ++ S+ LYA F + +AKS PF
Sbjct: 709 GYLLS-LSSYNYILYP-ISNVSSTVFSALYAVASHPEGWLILLIFFLGGLAKSAQFPFTQ 766
Query: 213 WVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG- 270
W+ T P+ +S+L+ A M + L + Y +P + A++ +TL
Sbjct: 767 WL-LTAMTGPTPVSALIHAATMVNLGAI-LTFLTYQFIPINSNTYLFFAIMVGITLFTAL 824
Query: 271 --TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
++ AL ++ K +LAY + Q+ + +G L + +LG+ G+ H L+K
Sbjct: 825 YTSINALASNEQKVILAYSTADQISLMIFSSSLGALLGNV--SLGIIIGLIQMFAHGLYK 882
Query: 329 GSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYT 388
SLF++AGSV + T + + L + + + L+A+L ++ +PP GF + +I
Sbjct: 883 ASLFMNAGSVIHYTESRYVASKPLLYKEIPSVFILQLIAALNLANLPPLIGFWAHNIIGN 942
Query: 389 AGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLIL 448
+S + + ++ F+ ++ + +I T + GE+++ + + + MV+ L
Sbjct: 943 LA-SSTSTTIFYLYIILEFLGSIYILRYIA-RTFLWKGETDKTHEHGHLSILMVISPAFL 1000
Query: 449 SSLCLIIGI 457
+I+G+
Sbjct: 1001 ILGSIILGV 1009
>pir||B71640 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain L1 RP792 -
Rickettsia prowazekii >gi|3861319|emb|CAA15218.1|
(AJ235273) NADH DEHYDROGENASE I CHAIN L (nuoL1)
[Rickettsia prowazekii]
Length = 653
Score = 143 bits (357), Expect = 6e-33
Identities = 125/478 (26%), Positives = 225/478 (46%), Gaps = 51/478 (10%)
Query: 4 MELALPLVLFILG--MLGGLSKKAFKVSS-AFAALASL---------SIVALVFNLKP-- 49
M + LPLV I+ L + KK K+ + +F +L++L ++V + ++K
Sbjct: 9 MIIILPLVSSIINGLFLNIIDKKLAKIIAISFLSLSALFSLVIFCDVTLVGKIIHIKLLP 68
Query: 50 -VEGKLLGL--PVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFL- 105
+E K L + +YID + I + + + +YS+ YM G + + +FL
Sbjct: 69 WIEFKNLQVNWSIYIDQLTSIMFIAVTFVSSVVHIYSLGYMAEDKG-----IIRFLSFLS 123
Query: 106 -LSMFLILITS--NLVWFVFFWELMTLSSFILIT-WDEKDF--DPGIKYYIAMHILTTFP 159
+ F++++ S N + WE + + S++LI W K+ IK +I + + F
Sbjct: 124 LFTFFMLMLVSADNFLQLFCGWEGVGVCSYLLIGFWHSKESANKAAIKAFITNRV-SDFA 182
Query: 160 LFISLGVSYSFLGSLDAMTYPNLKSLPSSATLLLYASFL--------IAFMAKSGIVPFH 211
+ + + GS + + L S+ + ++ S L I M KS + H
Sbjct: 183 FILGIITIIVYYGSANYKDVFSSAKLLSNTKIFVHFSILDIICLLLFIGCMGKSAQIGLH 242
Query: 212 FWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG 270
W+P + P+ +S+L+ A M VF + R Y +P + + + ++G +T
Sbjct: 243 VWLPDAME-GPTPVSALIHAATMVTAGVFLVARCSYLFEYSPIVLQF-ITIIGGITCLFA 300
Query: 271 TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGS 330
A+ +SD KK++AY + Q+GY+++ G+ + IFH + H+ FK
Sbjct: 301 ASIAIMQSDIKKIIAYSTCSQLGYMFMACGVS----------SYNSAIFHLVTHAFFKAL 350
Query: 331 LFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAG 390
LFLSAG+V +A E N+ +GGL +M T L+ SLA+ G+ P +GF SK LI A
Sbjct: 351 LFLSAGNVIHAVNEHNIFKMGGLINKMPITYGNFLIGSLALIGIYPLSGFYSKDLILEAT 410
Query: 391 YNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLIL 448
Y+SG + FG + A+ + ++ I + + E + ++ E M P ++L
Sbjct: 411 YSSGSFMFIFGIITAILTAIYSMKIIILVFHGKTKLEKDVFKHAHEPTKIMNNPLILL 468
>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
Length = 480
Score = 141 bits (353), Expect = 2e-32
Identities = 105/418 (25%), Positives = 200/418 (47%), Gaps = 20/418 (4%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS 115
G+ + D F+ + +L I+G LYS + + + Y+ L + +T
Sbjct: 69 GIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYS-GVQFLLAGVSGAFLTG 127
Query: 116 NLVWFVFFWELMTLSSFILITWDEKDFD--PGIKYYIAMHILTTFPLFISLGVSYSFLGS 173
+L F+EL+ ++S++LI +KY I +I+++ I +G Y+ G+
Sbjct: 128 DLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKY-IVFNIVSSALFVIGVGFLYAVTGT 186
Query: 174 LDAMTYPNLKSLPSSATLLLYAS---FLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLA 230
L+ M ++K S T L+ L+ F K GI P +FW+P +Y P+ IS+L
Sbjct: 187 LN-MADLSVKISESGQTGLITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPAAISALFG 245
Query: 231 GAMEKIAVFGLIRIMYTALPTPKSIGY-LVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
+ K+ ++ + R+ + + L+ L A+T+ G + +L S+ K++ Y+ I
Sbjct: 246 ALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMKIVIYNII 305
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDN 349
+G I G+ + +P G I++ ++ L KG+LF+ AG++ TG +L
Sbjct: 306 TAVGVILFGVAV----HTPASIQG---AIYYLIHDMLIKGALFMLAGTLIALTGTASLHK 358
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL +R G +++++++G+PP +GF+ K+ I G+ G+ +S +L + S
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGEFTIS---MLILLSS 415
Query: 410 AVTLASFIKFYTSQF-GGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLI 466
+ L S ++ + F G E E + ++ P I L L+ G+ V P +
Sbjct: 416 LLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAIFLLLSLLFGLGTEWVSPYV 473
>gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU4C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|66180|pir||DELVN4 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - liverwort (Marchantia polymorpha)
chloroplast >gi|11723|emb|CAA28134.1| (X04465) ndh4
[Marchantia polymorpha]
Length = 499
Score = 141 bits (352), Expect = 2e-32
Identities = 114/445 (25%), Positives = 201/445 (44%), Gaps = 53/445 (11%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
IDGFS+ +L+ G + A+L + P + R+P + +A + + +F + +++ F
Sbjct: 82 IDGFSIGLILLTGFITTLATLAAWP-VTRNPRLFYFLMLAMYSGQIGLFA---SQDILLF 137
Query: 121 VFFWELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY 179
F WEL L ++L+ W K ++ T F L+ + G + +G L Y
Sbjct: 138 FFMWELELLPVYLLLAMWGGKR---------RLYAATKFILYTAAGSLFILIGGLIMAFY 188
Query: 180 PNL-----------KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
+ K P +++Y SFLIA+ K I+PFH W+P T+ A + L
Sbjct: 189 NSNEFTFDFQFLINKKYPLELEIIIYLSFLIAYAVKLPIIPFHTWLPDTHGEAHYSTCML 248
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKS-IGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
LAG + K+ +GLIRI LP S + ++GA+ + L +L + + K+ +AY
Sbjct: 249 LAGILLKMGAYGLIRINMELLPHAHSFFAPWLVIVGAIQIVYAALTSLSQRNLKRRIAYS 308
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL 347
S+ MG++ +GIG + LG+ I ++H L SLF AG T L
Sbjct: 309 SVSHMGFVLIGIG-------SITNLGLNGAILQMISHGLIGASLFFLAGISYDRTRTLVL 361
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAV---- 403
D +GG+ M S+A +P +GF+++ +I+ ++ + F +
Sbjct: 362 DQMGGIGNSMPKIFTLFTSCSMASLALPGMSGFIAELMIFLGVIDNPNYSSLFKIIIIII 421
Query: 404 --LAVFISAVTLASFIK--FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI----- 454
+ + ++ + L S ++ FY +F E Y P+ I +CL
Sbjct: 422 QGIGIILTPIYLLSMLRQMFYGYKFSNTLEPY-------FMDAGPREIFILICLFFPIIS 474
Query: 455 IGIFPALVVPLINEPIGAPISTSLY 479
IGI+P V+ + N + +S + +
Sbjct: 475 IGIYPNFVLSIWNSKVNFLLSNNFF 499
>sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|7432513|pir||B70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoL - Mycobacterium
tuberculosis (strain H37RV) >gi|3242279|emb|CAA16667.1|
(AL021646) nuoL [Mycobacterium tuberculosis]
Length = 633
Score = 141 bits (352), Expect = 2e-32
Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 41/472 (8%)
Query: 6 LALPLVLFILGMLGGLSKKAF-KVSSAFAALASLSIVAL------------------VFN 46
+ALPL + + GG A+ + AALA+ + A+ VF
Sbjct: 14 VALPLAGAAILLFGGRRTDAWGHLLGCAAALAAFGVGAMLLADMLGRDGLERAIHQQVFT 73
Query: 47 LKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
P G + + ID S+ F+L++ +G +YS+ YM P + + N FL
Sbjct: 74 WIPAGGLQVDFGLQIDQLSMCFVLLISGVGSLIHIYSVGYMAEDPDRRRFFGYL-NLFLA 132
Query: 107 SMFLILITSNLVWFVFFWELMTLSSFILIT-WDEK-DFDPGIKYYIAMHILTTFPLFISL 164
SM L+++ N V WE + L+S++LI W K K M+ + L + +
Sbjct: 133 SMLLLVVADNYVLLYVGWEGVGLASYLLIGFWYHKPSAATAAKKAFVMNRVGDAGLAVGM 192
Query: 165 GVSYSFLGSLD-AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPS 223
+++S G+L A + + + + + L+ AKS VP W+ + P+
Sbjct: 193 FLTFSTFGTLSYAGVFAGVPAASRAVLTAIGLLMLLGACAKSAQVPLQAWLGDAME-GPT 251
Query: 224 NISSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDA 280
+S+L+ A M V+ ++R +Y PT + V ++GAVTL G + + D
Sbjct: 252 PVSALIHAATMVTAGVYLIVRSGPLYNLAPTAQ---LAVVIVGAVTLLFGAIIGCAKDDI 308
Query: 281 KKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEY 340
K+ LA +I Q+GY+ L G LG G I H L H FK LFL +G+V +
Sbjct: 309 KRALAASTISQIGYMVLAAG--------LGPAGYAFAIMHLLTHGFFKAGLFLGSGAVIH 360
Query: 341 AT-GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
A E ++ GGL + T LA LAI GVPPF GF SK I A +G + S
Sbjct: 361 AMHEEQDMRRYGGLRAALPVTFATFGLAYLAIIGVPPFAGFFSKDAIIEAALGAGGIRGS 420
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGGESERYRDV--SEVPLSMVVPQLILS 449
A+ + VT + F GE E P M P ++L+
Sbjct: 421 LLGGAALLGAGVTAFYMTRVMLMTFFGEKRWTPGAHPHEAPAVMTWPMILLA 472
>pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia
coli >gi|304921|gb|AAA53583.1| (L19568) NADH ubiquinone
oxidoreductase subunit [Escherichia coli]
>gi|416008|emb|CAA48372.1| (X68301) NADH dehydrogenase
I, subunit nuoM [Escherichia coli]
Length = 509
Score = 141 bits (351), Expect = 3e-32
Identities = 116/438 (26%), Positives = 196/438 (44%), Gaps = 41/438 (9%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPG-----KEWVYAVAYNAFL-LSM 108
+ + + IDG SL+ +++ G+LG A L S +E++ G W+ FL + M
Sbjct: 77 ISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDM 136
Query: 109 FLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD------PGIKYYI---AMHILTTF 158
FL F FFWE+M + + LI W K D K++I A ++
Sbjct: 137 FL---------FFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLI 187
Query: 159 PLFISLGVSYSFLGSLDAMTYPNLKSLPSSATL--LLYASFLIAFMAKSGIVPFHFWVPS 216
+ + V Y+ G + Y L + P S+ + LL F IAF K +VP H W+P
Sbjct: 188 AILALVFVHYNATG-VWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPD 246
Query: 217 TYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTVGTLYAL 275
+ AP+ S LAG + K A +GL+R P + +A+ LG + + G A
Sbjct: 247 AHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAF 306
Query: 276 RESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSA 335
++D K+L+AY S+ MG++ + I G L + M A H L LF+
Sbjct: 307 AQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA-------HGLSAAGLFILC 359
Query: 336 GSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGD 395
G + ++ +GGL +MKW +L ++A G+P F+ +++I +
Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419
Query: 396 MVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERY--RDVSEVPLSMVVPQLILSSLCL 453
++ VF S +LA + Y FG + +++ + L V L+L L +
Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAY---FGKAKSQIASQELPGMSLRDVFMILLLVVLLV 476
Query: 454 IIGIFPALVVPLINEPIG 471
++G +P ++ + IG
Sbjct: 477 LLGFYPQPILDTSHSAIG 494
>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
(M99378) NADH dehydrogenase subunit 5 [Synechococcus
PCC7002]
Length = 664
Score = 141 bits (351), Expect = 3e-32
Identities = 117/434 (26%), Positives = 196/434 (44%), Gaps = 50/434 (11%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+D S + +I+ + +Y+ YM PG YA + F SM ++ + NLV
Sbjct: 89 VDHLSALMSVIVTTVALLVMIYTDGYMAHDPGYVRFYAYL-SIFSSSMLGLVFSPNLVQV 147
Query: 121 VFFWELMTLSSFILIT--WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD--- 175
FWEL+ + S++LI +D K + + + F L + + Y GS +
Sbjct: 148 YIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDFGLLLGMLGLYWATGSFEFDL 207
Query: 176 -AMTYPNLKSLPSSATLLLYASFLIAFM---AKSGIVPFHFWVPSTYKVAPSNISSLL-A 230
+L S ++LL ++ F+ AKS P H W+P + P+ IS+L+ A
Sbjct: 208 MGDRLMDLVSTGQISSLLAIVFAVLVFLGPVAKSAQFPLHVWLPDAME-GPTPISALIHA 266
Query: 231 GAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIG 290
M VF + R+ P P+++ ++A GA T +G AL ++D KK LAY ++
Sbjct: 267 ATMVAAGVFLVARMYPVFEPIPEAMN-VIAWTGATTAFLGATIALTQNDIKKGLAYSTMS 325
Query: 291 QMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET----- 345
Q+GY+ + +GIG G AG+FH + H+ FK LFL +GSV + E
Sbjct: 326 QLGYMVMAMGIG----------GYTAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVVGHNA 375
Query: 346 ----NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
++ +GGL + M T L+ +LAI G+PPF GF SK I + + ++ G
Sbjct: 376 VLAQDMRLMGGLRKYMPITATTFLIGTLAICGIPPFAGFWSKDEILGLAFEANPVLWFIG 435
Query: 402 AVLAVFISAVTLASFIKFYTSQFGGESERYRD------------------VSEVPLSMVV 443
A + + + +F G ++ ++ E PL+M
Sbjct: 436 WATAGMTAFYMFRMYFLTFEGEFRGTDQQLQEKLLTAAGQAPEEGHHGSKPHESPLTMTF 495
Query: 444 PQLILSSLCLIIGI 457
P + L+ ++IG+
Sbjct: 496 PLMALAVPSVLIGL 509
>sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
13) (NUO13) >gi|7432335|pir||C64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia coli
>gi|1788613|gb|AAC75337.1| (AE000317) NADH dehydrogenase
I chain M [Escherichia coli K12]
>gi|1799637|dbj|BAA16105.1| (D90859) NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 [Escherichia coli]
Length = 509
Score = 140 bits (350), Expect = 4e-32
Identities = 116/438 (26%), Positives = 196/438 (44%), Gaps = 41/438 (9%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPG-----KEWVYAVAYNAFL-LSM 108
+ + + IDG SL+ +++ G+LG A L S +E++ G W+ FL + M
Sbjct: 77 ISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDM 136
Query: 109 FLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD------PGIKYYI---AMHILTTF 158
FL F FFWE+M + + LI W K D K++I A ++
Sbjct: 137 FL---------FFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLI 187
Query: 159 PLFISLGVSYSFLGSLDAMTYPNLKSLPSSATL--LLYASFLIAFMAKSGIVPFHFWVPS 216
+ + V Y+ G + Y L + P S+ + LL F IAF K +VP H W+P
Sbjct: 188 AILALVFVHYNATG-VWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPD 246
Query: 217 TYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTVGTLYAL 275
+ AP+ S LAG + K A +GL+R P + +A+ LG + + G A
Sbjct: 247 AHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAF 306
Query: 276 RESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSA 335
++D K+L+AY S+ MG++ + I G L + M A H L LF+
Sbjct: 307 AQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA-------HGLSAAGLFILC 359
Query: 336 GSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGD 395
G + ++ +GGL +MKW +L ++A G+P F+ +++I +
Sbjct: 360 GQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVP 419
Query: 396 MVLSFGAVLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEVPLSMVVPQLILSSLCL 453
++ VF S +LA + Y + + S+ +S L M+ L+L L +
Sbjct: 420 VITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMI---LLLVVLLV 476
Query: 454 IIGIFPALVVPLINEPIG 471
++G +P ++ + IG
Sbjct: 477 LLGFYPQPILDTSHSAIG 494
>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
>gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
dehydrogenase (ubiquinone) [Bacillus subtilis]
Length = 480
Score = 140 bits (350), Expect = 4e-32
Identities = 105/418 (25%), Positives = 200/418 (47%), Gaps = 20/418 (4%)
Query: 56 GLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS 115
G+ + D F+ + +L I+G LYS + + + Y+ L + +T
Sbjct: 69 GIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYS-GVQFLLAGVSGAFLTG 127
Query: 116 NLVWFVFFWELMTLSSFILITWDEKDFD--PGIKYYIAMHILTTFPLFISLGVSYSFLGS 173
+L F+EL+ ++S++LI +KY I +I+++ I +G Y+ G+
Sbjct: 128 DLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKY-IVFNIVSSALFVIGVGFLYAVTGT 186
Query: 174 LDAMTYPNLKSLPSSATLLLYAS---FLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLA 230
L+ M ++K S T L+ L+ F K GI P +FW+P +Y P+ IS+L
Sbjct: 187 LN-MADLSVKISESGQTGLITVIGVLLLLVFGMKGGIFPLYFWLPGSYYAPPAAISALFG 245
Query: 231 GAMEKIAVFGLIRIMYTALPTPKSIGY-LVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
+ K+ ++ + R+ + + L+ L A+T+ G + +L S+ K++ Y+ I
Sbjct: 246 ALLTKVGLYAITRVFTLIFIHDTAFTHQLMIWLAALTVIFGVIGSLAYSNVMKIVIYNII 305
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDN 349
+G I G+ + +P G I++ ++ L KG+LF+ AG++ TG +L
Sbjct: 306 TAVGVILFGVAV----HTPASIQG---AIYYLIHDMLVKGALFMLAGTLIALTGTASLHK 358
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL +R G +++++++G+PP +GF+ K+ I G+ G+ +S +L + S
Sbjct: 359 MGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGEFTIS---MLILLSS 415
Query: 410 AVTLASFIKFYTSQF-GGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLI 466
+ L S ++ + F G E E + ++ P I L L+ G+ V P +
Sbjct: 416 LLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAISLLLSLLFGLGTEWVSPYV 473
>pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli
>gi|397909|emb|CAA48371.1| (X68301) NADH dehydrogenase
I, subunit nuoL [Escherichia coli]
Length = 613
Score = 140 bits (349), Expect = 5e-32
Identities = 138/528 (26%), Positives = 244/528 (46%), Gaps = 55/528 (10%)
Query: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKL------ 54
M + + LPL+ F+L L + + SA + S+++ ALV L + L
Sbjct: 3 MLALTIILPLIGFVL--LAFSRGRWSENVSAIVGVGSVALAALVTALSALISSLTASKTY 60
Query: 55 --------------LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVA 100
+G + +DG SL + ++ +GF +Y+ YM G +A
Sbjct: 61 SQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYT 120
Query: 101 YNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITW---DEKDFDPGIKYYIAMHILTT 157
N F+ SM ++++ NL+ WE + L S++LI + D K+ +K ++ +
Sbjct: 121 -NLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDV 179
Query: 158 FPLFISLGVSYSFLGSLDAMTYPNLKS--LPSSATLLLYASFLI--AFMAKSGIVPFHFW 213
F F +L + Y+ LG+L+ L L +L++A+ ++ + KS +P W
Sbjct: 180 FLRF-ALFILYNELGTLNFREMVELAPAHLADGNNMLMWATLMLLGGAVGKSAQLPLQTW 238
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+ P+ +S+L+ A M V+ + R L TP+ + +LV ++GAVTL +
Sbjct: 239 LADAM-AGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVL-HLVGIVGAVTLLLAGF 296
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL ++D K++LAY ++ Q+GY++L +G+ A IFH + H+ FK LF
Sbjct: 297 AALVQTDIKRVLAYSTMSQIGYMFLALGV----------QAWDAAIFHLMTHAFFKALLF 346
Query: 333 LSAGSVEYAT-GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFN-GFLSKWLIYTAG 390
L++GSV A E N+ +GGL + + L L+ A+S +P GF SK I
Sbjct: 347 LASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGA 406
Query: 391 YNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSS 450
+G + L ++ F++ +L +F + G E V V S+ P ++L
Sbjct: 407 MANGHINLMVAGLVGAFMT--SLYTFRMIFIVFHGKEQIHAHAVKGVTHSL--PLIVLLI 462
Query: 451 LCLIIGIFPALVVPLINE--PIGAPISTSLYLNFDSTAFSPLIFGLLI 496
L +G AL+VP + P ++ L + T+ + G+L+
Sbjct: 463 LSTFVG---ALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILL 507
>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 681
Score = 139 bits (347), Expect = 9e-32
Identities = 113/391 (28%), Positives = 175/391 (43%), Gaps = 30/391 (7%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
ID S + ++I+ + +Y+ YM PG YA + F SM ++I+ NLV
Sbjct: 89 IDHLSALMLVIVTSVALLVMIYTDGYMAHDPGYVRFYAYL-SLFASSMLGLVISPNLVQV 147
Query: 121 VFFWELMTLSSFILIT--WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMT 178
FWEL+ + S++LI +D K + + + F L + + Y GS D T
Sbjct: 148 YIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDFGLLLGILGLYWATGSFDFGT 207
Query: 179 Y-PNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
L+ L SS L + ++A + AKS P H W+P + P+ IS+L+
Sbjct: 208 IGERLEGLVSSGVLSGAIAAILAILVFLGPVAKSAQFPLHVWLPDAME-GPTPISALIHA 266
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
A A L+ MY + +A G T +G AL ++D KK LAY +I Q
Sbjct: 267 ATMVAAGVFLVARMYPVFEPIPVVMNTIAFTGCFTAFLGATIALTQNDIKKGLAYSTISQ 326
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV----EYATGE--- 344
+GY+ + +GIG AG+FH + H+ FK LFL +GSV E G
Sbjct: 327 LGYMVMAMGIG----------AYSAGLFHLMTHAYFKAMLFLCSGSVIHGMEGVVGHDPI 376
Query: 345 --TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
++ +GGL + M T L+ +LAI G+PPF GF SK I + + ++ G
Sbjct: 377 LAQDMRIMGGLRKYMPITATCFLIGTLAICGIPPFAGFWSKDEILGLAFQANPLLWFVGW 436
Query: 403 VLAVFISAVTLASFIKFYTSQFGGESERYRD 433
A + + + F G + +D
Sbjct: 437 ATAGMTAFYMFRMYFMTFEGGFRGNDQEAKD 467
>gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]
Length = 489
Score = 138 bits (345), Expect = 2e-31
Identities = 107/397 (26%), Positives = 193/397 (47%), Gaps = 21/397 (5%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGK--EWVYAVAYNAFLLSMFLIL 112
+ L + D ++F L+ L +AS YSI YM R G+ + Y A+ + S +
Sbjct: 22 VSLALRADALGVLFALLASTLWLAASFYSIGYM-RGLGEHSQTRYFAAFAGSIASAIAVA 80
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGI-KYYIAMHILTTFPLFISLGVSYSFL 171
+NLV +EL+T++++ L+ DE D + Y+A + + + Y
Sbjct: 81 FAANLVVLYLAYELLTVATYPLVVHDETDAARAAGRKYLAYTFGGGVAVLAGVVLVYHAT 140
Query: 172 GSLDAMTYPNLKSLPSSATLLLYASF---LIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
G+ A + L ++ L A+F + F K+ ++P H W+P VAP+ +S L
Sbjct: 141 GTT-AFAPGGIGGLATADPTLARAAFGLLITGFGVKAALMPLHSWLPDAM-VAPTPVSGL 198
Query: 229 L-AGAMEKIAVFGLIRIMYTA----LPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKL 283
L A A+ K VFG+ R++ L ++G VA++ A+TL V ++ ALR+ + K+
Sbjct: 199 LHAVAVVKSGVFGIARVLLDVYGIDLVAHLNVGMAVAVVAAITLIVASVIALRQDNLKRR 258
Query: 284 LAYHSIGQMGYIWLGIGIGLSLD-SPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
LA+ ++ Q+ YI LG+ +G + + + G+ H H+ K +LF AG++ T
Sbjct: 259 LAFSTVSQLSYIVLGLAVGAATPGADATKWALIGGLLHIPAHAFMKLTLFFCAGALHVET 318
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
++ ++ G+ +RM T A +A+ ++G+P GF+SK+ + G +V +
Sbjct: 319 HTDDISDMAGIGKRMPLTMTAFAVAAAGMAGIPLVAGFVSKYFLLIGTVTGGHLVFT--- 375
Query: 403 VLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPL 439
A+ +S V ++ F+ + E D E PL
Sbjct: 376 -AALLVSGVLNIAY--FWPVVYTAFFESQGDSDEKPL 409
>emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 586
Score = 138 bits (345), Expect = 2e-31
Identities = 124/470 (26%), Positives = 214/470 (45%), Gaps = 41/470 (8%)
Query: 9 PLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPV---EGKLLGLPVYI---D 62
P ++FILG L + V A+ L + + V ++P E + LG + + D
Sbjct: 7 PALIFILGALP-IPFLTGPVRKAYLVLIPVLAIVAVTAIEPGSHGETQFLGQDILVAKAD 65
Query: 63 GFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVF 122
S++F + I+ ++Y++ H + A+ ++ S ++ + +
Sbjct: 66 KLSIVFATVFTIMALIGTVYAL-----HLSGAGQHMAAF-VYVGSALAVVFAGDYLTLYL 119
Query: 123 FWELMTLSS-FILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPN 181
FWE M +S +++ + Y+ +H+ L + + + GSL + P
Sbjct: 120 FWEGMAFASAYLVFAQGGRQAIRAAFRYLMVHVTGGVVLLGGILLHGAAAGSL--LFGPV 177
Query: 182 LKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGL 241
L + A L+L F+ + + P + W+ Y A + ++ K AV+ L
Sbjct: 178 EGPLGAGAYLIL-----AGFLLNAAVPPLNAWLTDAYPEATVTGAVFMSAFTTKTAVYVL 232
Query: 242 IRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGI 301
R A P + L+ LG V G +YA+ E+D ++LLAYH + Q+GY+ GIGI
Sbjct: 233 AR----AFPGIE----LLVWLGTVMALYGVIYAVLENDCRRLLAYHIVSQVGYMVAGIGI 284
Query: 302 GLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTG 361
G L + HA H L+KG LF+ AG+V Y TG L LGGL + M T
Sbjct: 285 GTEL-------AVNGATSHAFAHILYKGLLFMGAGAVIYVTGRRKLTELGGLYKAMPLTV 337
Query: 362 LATLLASLAISGVPPFNGFLSK-WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY 420
++ + AIS P F+GF+SK ++ AG + +V+ L + S L + +K
Sbjct: 338 ALYMIGAFAISAFPFFSGFVSKSMVVAAAGQDHRALVM---LALTMASSGTFLHTGLKLP 394
Query: 421 TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPI 470
F G ++R E P +M+ + ++LC+ IG+FP + L+ P+
Sbjct: 395 YYMFFG-TDRGLQAREPPGNMLAAMGMAAALCIAIGVFPGPLYALLPYPV 443
>pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain J99)
>gi|4155782|gb|AAD06758.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 138 bits (344), Expect = 2e-31
Identities = 129/520 (24%), Positives = 233/520 (44%), Gaps = 58/520 (11%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALV----------------FNLKP 49
L LPL+ + L G KA V + +S + V F+
Sbjct: 11 LFLPLIGAVYAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEKYLFDWIV 70
Query: 50 VEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMF 109
V +G + +D + + ++++ ++ F +YSI YME G ++ + F+ SM
Sbjct: 71 VGNFKVGFSLMLDNINAVMIVVVTLVSFLVHVYSIGYMEHDTGFNRYFSYL-SGFVFSML 129
Query: 110 LILITSNLVWFVFFWELMTLSSFILIT--WDEKDFDPGIKYYIAMHILTTFPLFISLGVS 167
+++++ N + WE + L S++LI + +K + M+ +T + + + +
Sbjct: 130 VLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKKSANNASIEAFVMNRITDLGMLMGIILI 189
Query: 168 YSFLGSLDAMTYPNLKSLPSSA--TLLLYAS--FLIAFMAKSGIVPFHFWVPSTYKVAPS 223
+ G+L Y + S+ ++A ++L Y S I M KS P H W+ + + P+
Sbjct: 190 FWNFGTLQ---YKEVFSMLNNADYSMLFYISVFLFIGAMGKSAQFPMHTWLANAME-GPT 245
Query: 224 NISSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDA 280
+S+L+ A M V+ +IR +Y+A+ +GY +A LGA G AL D
Sbjct: 246 PVSALIHAATMVTAGVYLIIRANPLYSAV---FEVGYFIACLGAFVALFGASMALVNKDL 302
Query: 281 KKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEY 340
K+++AY ++ Q+GY+++ G+G +FH H+ FK LFL +G+V +
Sbjct: 303 KRIVAYSTLSQLGYMFVAAGLG----------AYAIALFHLFTHAFFKSLLFLGSGNVMH 352
Query: 341 ATGETNLD--NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
A E NLD +G L + M+ T + ++ S+A+ G+ PF G+ SK I + +L
Sbjct: 353 AM-EDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAFGMHHHIL 411
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIF 458
F ++ +A SF F + E M++ L L L +I G F
Sbjct: 412 WFVLLIGAIFTA--FYSFRLIMLVFFAPKQHEINHPHEAKNFMLLSMLPLGVLAVIAGFF 469
Query: 459 P-------ALVVPLINE---PIGAPISTSLYLNFDSTAFS 488
+ V+P + E P+ IS + + S A++
Sbjct: 470 EEPFFHFISQVIPSVGEYLVPLALLISITTIVVLLSIAYA 509
>pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain 26695)
>gi|2314436|gb|AAD08315.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO12 subunit (NQO12) [Helicobacter
pylori 26695]
Length = 612
Score = 138 bits (343), Expect = 3e-31
Identities = 129/518 (24%), Positives = 232/518 (43%), Gaps = 54/518 (10%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALV----------------FNLKP 49
L LPL+ I L G KA V + +S + V F+
Sbjct: 11 LFLPLIGAIYAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEKYLFDWIV 70
Query: 50 VEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMF 109
V +G + +D + + ++++ ++ F +YSI YME G ++ + F+ SM
Sbjct: 71 VGNFKVGFSLMLDNINAVMIVVVTLVSFLVHVYSIGYMEHDAGFNRYFSYL-SGFVFSML 129
Query: 110 LILITSNLVWFVFFWELMTLSSFILIT-WDEKDF--DPGIKYYIAMHILTTFPLFISLGV 166
+++++ N + WE + L S++LI W K + I+ ++ M+ +T + + + +
Sbjct: 130 VLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKTSANNASIEAFV-MNRITDLGMLMGIIL 188
Query: 167 SYSFLGSLDAMTYPNLKSLPSSATLLLYASFL-IAFMAKSGIVPFHFWVPSTYKVAPSNI 225
+ G+L ++ + + L + FL I M KS P H W+ + + P+ +
Sbjct: 189 IFWNFGTLQYKEVFSMLNNTDYSMLFYISVFLFIGAMGKSAQFPMHTWLANAME-GPTPV 247
Query: 226 SSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKK 282
S+L+ A M V+ +IR +Y+A+ +GY +A LGA G AL D K+
Sbjct: 248 SALIHAATMVTAGVYLVIRANPLYSAV---FEVGYFIACLGAFVALFGASMALVNKDLKR 304
Query: 283 LLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT 342
++AY ++ Q+GY+++ G+G +FH H+ FK LFL +G+V +A
Sbjct: 305 IVAYSTLSQLGYMFVAAGLG----------AYAIALFHLFTHAFFKSLLFLGSGNVMHAM 354
Query: 343 GETNLD--NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSF 400
E NLD +G L + M+ T + ++ S+A+ G+ PF G+ SK I + +L F
Sbjct: 355 -EDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAFGMHHHILWF 413
Query: 401 GAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP- 459
++ +A SF F + E M++ L L L +I G F
Sbjct: 414 ALLIGAIFTA--FYSFRLIMLVFFAPKQHEINHPHEAQNFMLLSMLPLGVLAVIAGFFEE 471
Query: 460 ------ALVVPLINE---PIGAPISTSLYLNFDSTAFS 488
+ V+P + E P+ IS + + S A++
Sbjct: 472 PFFHFISQVIPSVGEYLVPLALLISITTIVVLLSIAYA 509
>sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432483|pir||T14202 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Rhizopus stolonifer mitochondrion
>gi|604924|gb|AAA99062.1| (U17011) NADH dehydrogenase,
subunit 5 [Rhizopus stolonifer]
Length = 654
Score = 137 bits (342), Expect = 3e-31
Identities = 137/526 (26%), Positives = 230/526 (43%), Gaps = 51/526 (9%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYID----- 62
L L L + G L +K K S +SL + AL+ + E L G PV I
Sbjct: 6 LTLPLLSATVAGFLGRKIGKTGSHLITCSSLVLTALLALVAFYEVGLCGSPVSIKLMSWI 65
Query: 63 ---------GF---SLIFMLILGILGFSA--SLYSIPYMERHPGKEWVYAVAYNAFLLSM 108
GF SL ++L +L SA +YS YM P + +A + F M
Sbjct: 66 DSEFLLVSWGFIYDSLTVSMLLPVLIVSALVHIYSTNYMSEDPHNQRFFAYL-SMFTFFM 124
Query: 109 FLILITSNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGV 166
+++ N + WE + +SS++LI + + + M+ + + I L
Sbjct: 125 LMLVTGDNYLVMFIGWEGVGISSYLLINFWFTRLQANKAAIKALVMNRVGDWGFSIGLWA 184
Query: 167 SYSFLGSLDAMTYPNLKSLPSSATLLLYA-SFLIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
+ G+LD T +L + + + + L+A M KS + H W+P + P+ +
Sbjct: 185 IFWTFGNLDFTTVFSLAPFINEELITIISICLLVAAMGKSAQIGLHTWLPDAME-GPTPV 243
Query: 226 SSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLL 284
S+L+ A M V+ L+R L + L+ +GA+T L ++D K+++
Sbjct: 244 SALIHAATMVTAGVYLLLRSS-PILEFGSTALILITWVGALTAFFAATTGLLQNDLKRVI 302
Query: 285 AYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG- 343
AY + Q+G ++L G+ +FH +NH+ FK LFLSAGSV +A
Sbjct: 303 AYSTCSQLGLLFLVCGLSQ----------YNVALFHLVNHAWFKALLFLSAGSVIHAMND 352
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLS 399
E +L GGL+ + +T ++ SL++ +P GF SK LI Y SG++V
Sbjct: 353 EQDLRKFGGLSRLLPFTYSMMVIGSLSLMALPFLTGFYSKDLIIELAYGHYSFSGNLVYW 412
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG--- 456
+V AVF + ++ S + G Y ++ E PL M +P ++L+ + G
Sbjct: 413 LASVAAVFTAMYSIRSLYLTFLGYPNGPKINYNNIHEAPLIMAIPLVVLAVFSIFFGYVT 472
Query: 457 --IFPALVVPLINEPIGAPISTSLYLNFD-----STAFSPLIFGLL 495
+F + N + + S+ ++ + S F PLI LL
Sbjct: 473 KDLFVGMGTDFYNNALFIHPNHSILVDTEFGLPMSMKFLPLIGSLL 518
>pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 APE1415 -
Aeropyrum pernix (strain K1) >gi|5105098|dbj|BAA80412.1|
(AP000061) 513aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 13 [Aeropyrum pernix]
Length = 513
Score = 137 bits (342), Expect = 3e-31
Identities = 134/466 (28%), Positives = 210/466 (44%), Gaps = 61/466 (13%)
Query: 4 MELALPLVLF--ILGMLGGLSKKAFKVSSAFAALA-SLSIVALVFNLKPVEGKL------ 54
MEL PL+ +L +L L+ A +A+ +A +L+I +V + +G L
Sbjct: 1 MELGFPLLWLSLVLPVLASLTIVALPPRTAYWLVAITLAIPGIVSSYYAFQGVLSEGIID 60
Query: 55 --------LGLPVY---IDGFSLIFMLILGILGFSASLYSIPYME-----------RHPG 92
+G+ V +DGFS F+L + ++ ++Y YME R PG
Sbjct: 61 PVSLNLSNIGIGVVALAVDGFSYPFVLGVSVVTALVAVYGYKYMEVRLREMEGEGERAPG 120
Query: 93 KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITW----DEKDFDPGIKY 148
Y + Y+ F +M I + N + F+ F EL LSSF+LI + D + + Y
Sbjct: 121 HA-AYLILYSIFSSTMLGIAYSLNFLLFIIFLELSLLSSFLLIAFYGYGDRRRI--ALLY 177
Query: 149 YIAMHILTTFPLFISLGVSYSFL--GSLDAMTYPN--LKSLPSSATLLLYA-----SFLI 199
++ HI L LG Y + G+ D T + S A +YA S L+
Sbjct: 178 FVWTHIAGALAL---LGGLYYVIKTGTFDVATVEGGRIVYFSSPADRSVYAAIAGVSLLL 234
Query: 200 AFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYL 258
+ K + H W+P + AP+ IS+LL+ + + +G+ R P + + L
Sbjct: 235 GMLVKMAVFGVHMWLPYAHAEAPTPISALLSPNLIGLGGYGIARFAAAFYPWLLEDLKPL 294
Query: 259 VALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGI 318
+ L VT+ G L AL + D K+LLAY SI QMGY+ L + S L LG A
Sbjct: 295 LVGLAFVTIVYGGLVALSQLDFKRLLAYSSISQMGYMLLAL-------STLHPLGFAAAS 347
Query: 319 FHALNHSLFKGSLFLSAG-SVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPF 377
L H++ K LF++AG + A G N+ +GGLA T A L+ L ++G+PP
Sbjct: 348 LIFLGHAVGKAVLFMTAGVFITEAHGLRNIARMGGLARLYPLTAAAALIGFLHLAGIPPA 407
Query: 378 NGFLSKWLIYTA--GYNSGDMVLSFGAVLAVFISAVTLASFIKFYT 421
GF + + + Y +S G + + I A T+ + F T
Sbjct: 408 FGFWGELYLTLSVLNYPGYSDAVSLGLLAIILIVAFTVTAAYSFIT 453
>pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948717|gb|AAG06036.1|AE004693_7 (AE004693) NADH
dehydrogenase I chain M [Pseudomonas aeruginosa]
Length = 509
Score = 137 bits (342), Expect = 3e-31
Identities = 129/516 (25%), Positives = 229/516 (44%), Gaps = 63/516 (12%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALV---------FNLKPVEG------ 52
L L+ FI G L +++ + K + AL S+++V ++ F L P G
Sbjct: 6 LILIPFIGGFLCWIAEHSSKTLPRWIALLSMTLVLILSLWIWATGDFQLAPAPGGEPEWT 65
Query: 53 --------KLLGLPVYI--DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYN 102
+ LG+ +++ DG SL+ + + G+LG + L S ++R G + +
Sbjct: 66 LQFKVLWIERLGISIHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIGFFHLNLLWIL 125
Query: 103 AFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD-------PGIKYYIAMHI 154
++ +FL + +L F FFWE+M + + LI W D K++I
Sbjct: 126 GGVIGVFLAI---DLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATKFFIFTQA 182
Query: 155 LTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSAT----LLLYASFLIAFMAKSGIVPF 210
L LG+ + + +T+ L + + LL F +AF K +VP
Sbjct: 183 SGLVMLVAILGLVFVNFNATGVITFDYATLLKTQLSPHVEWLLMLGFFVAFAVKMPVVPV 242
Query: 211 HFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTV 269
H W+P + AP+ S LAG + K A +GLIR P + +A+ LG + +
Sbjct: 243 HSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPNASAEFAPIAMWLGIIGIFY 302
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G L + ++D K+L+AY S+ MG++ +GI G S + G+ + + H L
Sbjct: 303 GALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSG----SQVALQGV---VVQMIAHGLSAA 355
Query: 330 SLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTA 389
+LF+ G + ++ +GGL RM + +L + A G+P F+ ++LI
Sbjct: 356 ALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFVGEFLILIG 415
Query: 390 GYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG--GESERYRDVSEVPLSMVVPQLI 447
+ +++ VF S +L I + + FG E + LSMV L
Sbjct: 416 AFKVVPVIIVIATFGLVFASVYSL---IMIHRAYFGPSQSDEPILGLDARELSMV---LG 469
Query: 448 LSSLCLIIGIFPALVVPL-------INEPIGAPIST 476
L+ L +++G++P V+ + + + +GA +ST
Sbjct: 470 LAVLLVLLGVYPQPVLDISAASMHGVQQWLGAALST 505
>pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622358|gb|AAB85735.1| (AE000891) NADH dehydrogenase
I, subunit N [Methanobacterium thermoautotrophicum]
Length = 498
Score = 137 bits (342), Expect = 3e-31
Identities = 122/476 (25%), Positives = 229/476 (47%), Gaps = 35/476 (7%)
Query: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLP-- 58
+K + +A+ ++L I+ +L G F +A L+ S +A L
Sbjct: 29 VKALAVAVAILLPIIPLLAGYGVHYF---GGYAPLSENSTIAAGLPASIKSSYLYSFHPA 85
Query: 59 -VYIDGFSL-IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSN 116
Y+ G + IF+LIL ++ F A L S+ + R G VYA ++ I++T +
Sbjct: 86 ITYVFGSAQRIFLLILSLVTFLAVLTSLNEVRRPSG---VYAFLMFMGTAAVTAIVLTDD 142
Query: 117 LVWFVFFWELMTLSSF--ILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL 174
+ F+E+ L+ +L + E++++ +KY + + L + +G+ + G++
Sbjct: 143 IFNLYVFFEIAALAQVGVVLCSGVERNYETALKYMMIGGVAVPM-LLLGVGILLALTGNV 201
Query: 175 DA--MTYPNLKSL--PSSATLLLYASFLI-AFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
+ + Y L P S LL ++ LI ++ +G+ PFH + Y A + S+LL
Sbjct: 202 NISDIVYSMRSGLVNPGSPLFLLASALLIFGWLYGTGLPPFHTIKSAIYSKALPHGSALL 261
Query: 230 AG--AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
A+ +I M+ +P + + +L G V +G AL ++D ++++ +
Sbjct: 262 QAFSVFTFTALAIVILRMFYHVPLVRWVMVFFSLAGMV---LGISMALMQTDLRRMIGFL 318
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL 347
++G++GYI +G+G+G A + AG+F A+N +L +FL G++ Y TG+T+
Sbjct: 319 AVGELGYIGIGLGLGT-------AASISAGLFQAVNEALITACIFLGFGTIFYMTGKTDP 371
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVF 407
+ +GGL +L+ ++GVPPFN F SK + A +G L +L +
Sbjct: 372 EAMGGLLAYKPGLAGLVMLSGFIMAGVPPFNVFQSKLRLIQAAIQAGVPEL---GILMIL 428
Query: 408 ISAVTLASFIKFYTSQFGGESERYRDVS--EVPLSMVVPQLILSSLCLIIGIFPAL 461
+S VT +F++ + S + R ++ VP S V ++L +C ++GI P L
Sbjct: 429 LSIVTFMTFMRAFYSVYLKPEPRGMELESRSVPRSTVFSMVVLIIICTVLGIAPWL 484
>pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657546|gb|AAF96070.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 891
Score = 137 bits (341), Expect = 5e-31
Identities = 119/452 (26%), Positives = 216/452 (47%), Gaps = 31/452 (6%)
Query: 50 VEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMF 109
V G L L +DG S +F ++ +G +Y++ YM+ + + + + F+L+M
Sbjct: 50 VPGLDLNLSFRLDGLSFLFASLITGIGALIQIYALAYMKEKAAR-FSFHLYLTLFMLAML 108
Query: 110 LILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYS 169
++++ N++ FWEL T++S++LI ++ P + +L T ++L
Sbjct: 109 GVVVSDNILLLFIFWELTTITSYLLIGFNHDK--PVSRKNALQSLLVTGAGGLALLAGLI 166
Query: 170 FLGSLDAMTYPNLKSLPSSATLLLYASF-------LIAFMAKSGIVPFHFWVPSTYKVAP 222
LG L A +Y + + + + F L+ KS PFHFW+P+ AP
Sbjct: 167 LLG-LMANSYQISVIIEHADHIAQHPWFMPSLILVLLGAFTKSAQFPFHFWLPNAM-AAP 224
Query: 223 SNISSLLAGA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAK 281
+ +S+ L A M K ++ L R+ + Y + ++GAVT L A +++D K
Sbjct: 225 TPVSAYLHSATMVKAGIYLLARLS-PIYASSDFWFYCLTIVGAVTALWCALLAFKQTDLK 283
Query: 282 KLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
+LAY + +G + L +G+G + L +FA HS +K +LF+ G+++ A
Sbjct: 284 LMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFA-------HSFYKAALFMVVGNIDKA 336
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
TG + LG L + + +A ++A+L+ SGV P GFLSK +Y + SG +S
Sbjct: 337 TGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAWISLV 396
Query: 402 AVLA-VFISAVTLASFIKFYTSQFGGESERYRDVS-EVPLSMVVPQLILSSLCLIIGIFP 459
+L + A+ +A K + Q ESE + + E S+ +P + L+ ++ +F
Sbjct: 397 LLLINALMVALAIALLYKPFFGQATKESESHPPKAIEQKKSLWLPAMGLAIASFLLPVFA 456
Query: 460 A------LVVPLI--NEPIGAPISTSLYLNFD 483
LV+P + +P P + L+ F+
Sbjct: 457 LDWINQHLVIPAVMAMDPNSVPQAAKLWQGFN 488
>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
Length = 672
Score = 136 bits (340), Expect = 6e-31
Identities = 116/439 (26%), Positives = 207/439 (46%), Gaps = 47/439 (10%)
Query: 54 LLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILI 113
+L + + ID + + + ++ + +Y++ YM GK +A F +M +++
Sbjct: 74 VLNIGILIDPLAAVMLSMVSFVSLLIHIYAVSYMSHDAGKARYFAETA-LFTAAMLSLVL 132
Query: 114 TSNLVWFVFFWELMTLSSFILIT-WDEKDFDPG-------------IKYYIAMHILTTFP 159
+ N++ WEL+ L S++LI W EK + + + +LT+
Sbjct: 133 SDNILQLFVSWELVGLCSYLLIGFWFEKPSAAAAAKKAFLTTRIGDVMFLTGIIVLTSDL 192
Query: 160 LFISLGVS-----------YSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIV 208
L +S G +S++ L A+ N+ S ++ F + KSG
Sbjct: 193 LKVSGGFQDGVYLLRFDEIFSYIPELAALQI-NILGFEISHLTIITLLFFGGAVGKSGQF 251
Query: 209 PFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTL 267
P H W+P + P+ +S+L+ A M V+ + R + P S+ + G L
Sbjct: 252 PLHVWLPDAME-GPTTVSALIHAATMVTAGVYLVARTFPMFIAAPDSLMVVAYFGGFTAL 310
Query: 268 TVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLF 327
GT+ + +D K++LA+ +I Q+GY+ LG+G+G ++ L A+G+ +FH +NH+ F
Sbjct: 311 FAGTM-GIVMNDLKRVLAFSTISQLGYMMLGLGLGTAIG--LEAVGI--SLFHLINHAFF 365
Query: 328 KGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAIS--GVP----PFNGFL 381
K LFL AGSV +A G ++ LGG+ + M T +A+LA++ G+P +GF+
Sbjct: 366 KALLFLCAGSVIHAVGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIGTSGFM 425
Query: 382 SKWLIYTAGY----NSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEV 437
SK I A Y +S + + ++LA ++++ + I F T F G+ E
Sbjct: 426 SKDPIIEAAYLFGEHSSNWIPYVFSILAALLTSIYIFRLI-FMT--FTGKPRSNYHGHES 482
Query: 438 PLSMVVPQLILSSLCLIIG 456
P M +P IL+ L G
Sbjct: 483 PAIMTIPLSILAIFALAFG 501
>sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
12) (NUO12) >gi|7432511|pir||D64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L - Escherichia coli
>gi|1788614|gb|AAC75338.1| (AE000317) NADH dehydrogenase
I chain L [Escherichia coli K12]
>gi|1799638|dbj|BAA16106.1| (D90859) NADH dehydrogenase
I chain nuoL [Escherichia coli]
Length = 613
Score = 136 bits (339), Expect = 8e-31
Identities = 122/454 (26%), Positives = 217/454 (46%), Gaps = 33/454 (7%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+G + +DG SL + ++ +GF +Y+ YM G +A N F+ SM ++++
Sbjct: 75 IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYT-NLFIASMVVLVLA 133
Query: 115 SNLVWFVFFWELMTLSSFILITW---DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFL 171
NL+ WE + L S++LI + D K+ +K ++ + F F +L + Y+ L
Sbjct: 134 DNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAF-ALFILYNEL 192
Query: 172 GSLDAMTYPNLKS--LPSSATLLLYASFLI--AFMAKSGIVPFHFWVPSTYKVAPSNISS 227
G+L+ L +L++A+ ++ + KS +P W+ P+ +S+
Sbjct: 193 GTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADAM-AGPTPVSA 251
Query: 228 LL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
L+ A M V+ + R L TP+ + +LV ++GAVTL + AL ++D K++LAY
Sbjct: 252 LIHAATMVTAGVYLIARTHGLFLMTPEVL-HLVGIVGAVTLLLAGFAALVQTDIKRVLAY 310
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT-GET 345
++ Q+GY++L +G+ A IFH + H+ FK LFL++GSV A E
Sbjct: 311 STMSQIGYMFLALGV----------QAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQ 360
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFN-GFLSKWLIYTAGYNSGDMVLSFGAVL 404
N+ +GGL + + L L+ A+S +P GF SK I +G + L ++
Sbjct: 361 NIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMANGHINLMVAGLV 420
Query: 405 AVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVP 464
F++ +L +F + G E V V S+ P ++L L +G AL+VP
Sbjct: 421 GAFMT--SLYTFRMIFIVFHGKEQIHAHAVKGVTHSL--PLIVLLILSTFVG---ALIVP 473
Query: 465 LINE--PIGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P ++ L + T+ + G+L+
Sbjct: 474 PLQGVLPQTTELAHGSMLTLEITSGVVAVVGILL 507
>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechococcus sp. (strain PCC 7002)
>gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
subunit 4 [Synechococcus PCC7002]
Length = 498
Score = 136 bits (339), Expect = 8e-31
Identities = 118/429 (27%), Positives = 199/429 (45%), Gaps = 32/429 (7%)
Query: 38 LSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVY 97
LSI+ L +NL +DG SL +++ +L A +YSI P +
Sbjct: 62 LSILGLNYNLG------------VDGLSLPLIVLNSLLTLVA-IYSIGESNHRPKLYYSL 108
Query: 98 AVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-WD-EKDFDPGIKYYIAMHIL 155
+ N+ + LI +NL+ F F+E+ + ++LI W EK K+ I I
Sbjct: 109 ILLINSGITGA---LIANNLLLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAIS 165
Query: 156 TTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVP 215
L LG+ + S L++L + ++L LI F K +VP H W+P
Sbjct: 166 GLCVLAAFLGIVWLSQSSNFDFENLTLENLEFNTKVILLTILLIGFGIKIPLVPLHTWLP 225
Query: 216 STYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTP-KSIGYLVALLGAVTLTVGTLYA 274
Y A ++ LL G K+ +GL+R P ++ +A++G V++ G+L A
Sbjct: 226 DAYVEANPAVTVLLGGVFAKLGTYGLVRFGLQLFPDVWSTVSPALAVIGTVSVMYGSLAA 285
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
+ + D K+++AY SIG MGYI + G L S LGA+ ++HSL LF
Sbjct: 286 IAQRDLKRMVAYSSIGHMGYILVSTAAGTEL-SLLGAVAQM------ISHSLILALLFHL 338
Query: 335 AGSVEYATGETNLDNLGGLAERMKWTGLAT---LLASLAISGVPPFNGFLSKWLIYTAGY 391
G +E G +LD L GL ++ L + +LA +A +G+P GF++++L++ +
Sbjct: 339 VGIIERKVGTRDLDVLNGLMNPVRGLPLTSSLLILAGMASAGIPGLVGFVAEFLVFQGSF 398
Query: 392 NSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSL 451
+ + F ++A ++AV I + FG +V S +P + L+ +
Sbjct: 399 SRFPIPTLF-CIIASGLTAVYFV--ILLNRTCFGRLDSHTAYYPKVFASEKIPAIALTVI 455
Query: 452 CLIIGIFPA 460
L +G+ PA
Sbjct: 456 ILFLGLQPA 464
>sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|7432362|pir||C71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain M RP793 - Rickettsia
prowazekii >gi|3861320|emb|CAA15219.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii]
Length = 491
Score = 135 bits (337), Expect = 1e-30
Identities = 119/480 (24%), Positives = 226/480 (46%), Gaps = 47/480 (9%)
Query: 8 LPL--VLFILGMLGGLSKKAFKVSSAFAALAS-LSIVALVFNLKPVEGK----------- 53
LPL VL+IL + +KKA K+S A L+S L+ ++ ++ L +
Sbjct: 13 LPLISVLYIL-LFFNQNKKADKLSIYVAMLSSVLTFISTIYILIEFDVSNNTYQFVERYT 71
Query: 54 ---LLGLPVYI--DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSM 108
+GL ++ DG ++ F+++ L + S+ ++++ + V + + +
Sbjct: 72 WLDKIGLEFHVGVDGIAIFFVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLLMESLCIGA 131
Query: 109 FLILITSNLVWFVFFWELMTLSSFILI-TWD-EKDFDPGIKYYIAMHILTTFPLFISLGV 166
F + NL+ F F+E + + +I+I W + +K+++ + F L ++L
Sbjct: 132 FTSI---NLLLFYLFFEAILVPMYIIIGVWGGDNRIYAALKFFLYTFFGSVFFL-LALIY 187
Query: 167 SYSFLGSLDAMTYPNL-KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
YS + S D L ++P A +L+ + IAF K+ ++PFH W+P + AP+
Sbjct: 188 IYSKIHSFDLTNILELIGNIPLFAQKILWWAIFIAFAIKTPMIPFHTWLPDAHVQAPTTG 247
Query: 226 SSLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLL 284
S +LAG + K+ +G +R++ P + V L + + +L AL + D K+++
Sbjct: 248 SVILAGILLKLGGYGFLRVLLPLFPNASQEFAIYVIYLSVIAIIYASLVALAQKDIKQMI 307
Query: 285 AYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGE 344
AY SI MGY+ +GI +G+ IF L+H + SLFL G++
Sbjct: 308 AYSSIAHMGYVTIGI-------FSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHT 360
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVL 404
+ GG+A +M ++A L+ G+P +GF+ ++L Y ++V +F A L
Sbjct: 361 KEIAKYGGVANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKV-NVVTAFIAAL 419
Query: 405 AVFISAVTLASFIKFYTSQFGG-----ESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
+ + AV + +K Y G E + +RD+ + + + P ++ L + G+ P
Sbjct: 420 GIILGAVYM---LKLYKEVMLGEITNTEIKHFRDLYKYEIISIAPLIL---LIIYFGLMP 473
>emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 491
Score = 135 bits (336), Expect = 2e-30
Identities = 112/418 (26%), Positives = 192/418 (45%), Gaps = 26/418 (6%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+DG S +F+ + +L + L S ++R + V + A +L +F L +L F
Sbjct: 78 VDGISALFLFLTALLSLISVLASWVAIDRKVKEFMVSLLVMQALMLGVFCAL---DLFLF 134
Query: 121 VFFWELMTLSSFILI-TWD-EKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG--SLDA 176
FWE M + +++I W E K+++ + L LF+ + F G + D
Sbjct: 135 YVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFL--YTLAGSILFLIGVIVLYFQGGETFDI 192
Query: 177 MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKI 236
+ + LP L+ +FL+AF K +VP H W+P + AP+ S +LAG + K+
Sbjct: 193 LALTG-QDLPFGVQSWLFFAFLVAFAVKVPMVPVHTWLPDAHVQAPTAGSIILAGVLLKM 251
Query: 237 AVFGLIRIMYTALPTPKSIGY--LVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGY 294
+G +R LP S+ Y L+ L A+ + G L AL + D KKL+AY SI MG+
Sbjct: 252 GAYGFLRFSLPMLP-EASLYYSTLMLALSALAIVYGGLLALAQDDLKKLVAYSSISHMGF 310
Query: 295 IWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLA 354
+ LGI L G+ I NH + G+LFL G + T ++ N GGL
Sbjct: 311 VTLGI-------FALNLRGLEGSILQMFNHGITTGALFLFVGLIYERTHTRSIANYGGLM 363
Query: 355 ERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLA 414
+ L +L+ +P N F+ + L+ + G+ + ++ AV+ +SA L
Sbjct: 364 KAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGF-AANLAAGAAAVVGALLSAAYLL 422
Query: 415 SFIKFYTSQFGGESERY--RDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPI 470
S +Y DV+ ++ ++P L+ L +G++P + +I+ +
Sbjct: 423 GMYGKVALGPPSVSAKYEIHDVNGREMAAILP---LAIFVLWVGLYPRPFLGIIDASV 477
>emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 664
Score = 134 bits (335), Expect = 2e-30
Identities = 129/477 (27%), Positives = 212/477 (44%), Gaps = 44/477 (9%)
Query: 8 LPLVLFILGMLGGLSKKAF-KVSSAFAALASLSIVALVF-------------NLKPVEGK 53
LP + G+L G S F + + LASL + ALV L P
Sbjct: 13 LPFLGAAAGLLLGRSAPGFARPLAVLPTLASLVLAALVAARQGGGRALDAVTELTPTGSV 72
Query: 54 LLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILI 113
+ L ++IDGF+ + +++G + +YS Y+ P + YA + F +MFL++
Sbjct: 73 PVELALHIDGFAALVAVLVGTVATCVQIYSTGYLRDDP-RYASYAALVSLFTSAMFLVVY 131
Query: 114 TSNLVWFVFFWELMTLSSFILIT--WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFL 171
+ +L+ + WE+M + S+ L+ W+ + + L P I L +
Sbjct: 132 SGDLMVLLVGWEVMGICSYFLVGHYWETPEARAASLKAFLVTKLGDVPFLIGLLALVTEA 191
Query: 172 GSLDAMTYPNLKSLPSSATLLLYASFLIAFMA-KSGIVPFHFWVPSTYKVAPSNISSLL- 229
GS + S L A L+A +A KS P H W+P P+ +S+L+
Sbjct: 192 GSFRITKILGAVASGSLDHPTLIALLLLAGVAGKSAQFPLHTWLPDAM-AGPTPVSALIH 250
Query: 230 AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
A M V+ + R++ ++ ++A++ AVT+ L AL + D K++LAY +I
Sbjct: 251 AATMVAAGVYFVARLL-PLFEASRAAMVVLAVMAAVTMVGSALAALAQDDIKRVLAYSTI 309
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL-- 347
GQ+GY+ + G A +FH L+H FK LFL+AG + +A G +L
Sbjct: 310 GQLGYMTGALATG----------DRGAAVFHLLSHGAFKALLFLAAGVIIHAAGTNSLAA 359
Query: 348 -DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN--SGDMVLSFGA-- 402
+ GL +R+ +A LA++ +PPF+GF SK + A + +G + GA
Sbjct: 360 MSRMRGLRDRVPDAYWTMTVALLALAAIPPFSGFFSKESVLGAAEHVVTGHTEHAPGAAG 419
Query: 403 ----VLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSM--VVPQLILSSLCL 453
V + + +T A + + F G D PL M V+ L L SL L
Sbjct: 420 WTVLVAGLITALLTAAYAARLWLLAFRGRGAEAPDHGRQPLVMNAVLWVLALPSLAL 476
>gi|11466663 NADH dehydrogenase subunit 5 [Malawimonas jakobiformis]
>gi|10178701|gb|AAG13713.1|AF295546_39 (AF295546) NADH
dehydrogenase subunit 5 [Malawimonas jakobiformis]
Length = 667
Score = 133 bits (331), Expect = 7e-30
Identities = 125/550 (22%), Positives = 239/550 (42%), Gaps = 68/550 (12%)
Query: 6 LALPLVLFILGMLGG--LSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDG 63
+ LP+V I+ GG + K ++ + L S + + F E +LG P YI G
Sbjct: 6 ITLPIVSAIISGFGGRFIGSKGSQILTTSCLLVSAILSIIAF----YEVGILGSPCYITG 61
Query: 64 FS-------------------LIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
F+ ++ ++++ ++ +LYS+ YM P + ++ + F
Sbjct: 62 FTWIDSGLFNLNYGLLFDSLTVVMLIVVTVIATLVNLYSVEYMSHDPHQPRFFSYI-SIF 120
Query: 105 LLSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEK--DFDPGIK---------YYIAM 152
+M +++ +N + WE + +SS++LI W + IK + +A+
Sbjct: 121 TFAMLILVTANNYLQMFIGWEGVGVSSYLLINFWFTRIQANKSAIKAMIVNRVGDFGLAL 180
Query: 153 HILTTFPLFISLGVSYSFLGSLDAMTYPNL-KSLPSSATLLLYASFLIAFMAKSGIVPFH 211
I+ + ++ S+ S F S L + A ++ I + KS + H
Sbjct: 181 GIMAIYYVYRSIDFSVIFASSYYLFNSKILFLNYEIDAITIISLLLFIGAIGKSAQIGLH 240
Query: 212 FWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG 270
W+P + P+ +S+L+ A M VF +IR T ++ ++ ++GA+T
Sbjct: 241 TWLPDAME-GPTPVSALIHAATMVTAGVFMIIRSSPLLEFTHNAL-VIITIMGAITAFFA 298
Query: 271 TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGS 330
+ ++D K+++AY + Q+GY+ G+ +FH +NH+ FK
Sbjct: 299 ATTGVTQNDLKRVIAYSTCSQLGYMIFACGLS----------SYSVSLFHLMNHAFFKAL 348
Query: 331 LFLSAGSVEYA-TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTA 389
LFLSAGSV +A E ++ +GG + + +T + L+ SL++ G+P GF SK +I
Sbjct: 349 LFLSAGSVIHAIADEQDMRKMGGFVQIIPFTYVLILIGSLSLMGIPFLTGFYSKDVILEL 408
Query: 390 GYNSGDMVLSF----GAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQ 445
+ + + SF G + A+F S + + ++ E ++ + P+ M++P
Sbjct: 409 AFANFHVYSSFSYWLGTISALFTSFYSFRLIYLTFFNKTNAFKETVSNMHDAPIIMIIPL 468
Query: 446 LILSSLCLIIGIFPALVV----------PLINEPIGAPISTSLYLNFDSTAFSPLIFGLL 495
+L + IG ++ L P I S +L + P+IF +L
Sbjct: 469 FLLGLGSIFIGYLTKDMIIGMGTHFWGNALFTLPQNILILQSEFLPY-YIKMIPVIFSIL 527
Query: 496 IVTLAFGTYI 505
L+F Y+
Sbjct: 528 GALLSFIVYM 537
>pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a -
Synechocystis sp. (strain PCC 6803)
>gi|1652513|dbj|BAA17434.1| (D90906) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 502
Score = 132 bits (330), Expect = 9e-30
Identities = 124/490 (25%), Positives = 219/490 (44%), Gaps = 46/490 (9%)
Query: 1 MKGMELALPLV-LFILGMLGGL--SKKAFKVSSAFAALASLSIVALVFNLKPVEGKL--- 54
M + L LP++ I+G G +K+ +++ FA L + + ++F + +
Sbjct: 1 MLSLLLILPVIGALIIGFFPGNIPAKQLRQITEVFAVLTLVWSLLVLFKFDVTDPQFQFQ 60
Query: 55 ----------LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
L + IDG SL +++ +L ++YSI + + NA
Sbjct: 61 EYLPWIPQLGLNYSLAIDGLSLPLVILNNLLT-GVAIYSIGPNVNRSRLYYGLILLINAG 119
Query: 105 LLSMFLILITSNLVWFVFFWELMTLSSFILIT-WD-EKDFDPGIKY--YIAMHILTTFPL 160
+ L+ NL+ F+ F+EL + +++I W EK +K+ Y A L
Sbjct: 120 ISGA---LLAQNLLLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLAA 176
Query: 161 FISLGVSYSFLGSLDAMTY-PNL-KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTY 218
F+ + S L + Y P + ++ SA +L L+ F K +VP H W+P Y
Sbjct: 177 FLGM----SLLSGSHSFDYNPEITQTFTESAQTILLILILLGFGIKIPLVPLHTWLPDAY 232
Query: 219 KVAPSNISSLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYLVALLGAVTLTVGTLYALRE 277
A + LL G + K+ +G+IR P T ++A++G VT+ G L A+ +
Sbjct: 233 TEASPATAILLGGILAKLGTYGIIRFGLQLFPQTWAQFAPVLAIIGTVTVLYGALSAIAQ 292
Query: 278 SDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGS 337
D K+++AY SIG MGYI + G L S LGA+ ++H L LF G
Sbjct: 293 KDIKRMVAYSSIGHMGYILVAAAAGTEL-SVLGAVAQM------VSHGLILALLFHLVGI 345
Query: 338 VEYATGETNLDNLGGLAERMKWTGLATLL---ASLAISGVPPFNGFLSKWLIYTAGYNSG 394
VE G +LD L GL ++ L + L +A +G+P GF ++++++ + +
Sbjct: 346 VERKAGTRDLDVLNGLMNPIRGLPLTSALLITGGMASAGIPGLVGFAAEFIVFQGSFPT- 404
Query: 395 DMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRD-VSEVPLSMVVPQLILSSLCL 453
+L + S +T F+ G+ + R +V S ++P L+L+++
Sbjct: 405 ---FPIPTLLCILASGLTAVYFVILLNRTCFGKLDNQRAYYPKVLASEMIPALVLTAIIF 461
Query: 454 IIGIFPALVV 463
+G+ P +V
Sbjct: 462 FLGVQPNYLV 471
>emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conserved)
[Methanobacterium thermoautotrophicum]
Length = 498
Score = 131 bits (327), Expect = 2e-29
Identities = 120/480 (25%), Positives = 223/480 (46%), Gaps = 47/480 (9%)
Query: 1 MKGMELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVA----------LVFNLKPV 50
+K + +A+ ++L I+ +L G F +A L+ +A +++ P
Sbjct: 29 VKALAVAVAILLPIIPLLAGYGAHYF---GGYAPLSENPAIASGLPDSVKSSYLYSFHP- 84
Query: 51 EGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFL 110
G+ IF+LIL I+ F A L S+ + + G VYA ++
Sbjct: 85 -----GITYLFGSAQRIFLLILSIVAFLAVLTSLNEVRKPSG---VYAFLMFMGTAAVTA 136
Query: 111 ILITSNLVWFVFFWELMTLSSF--ILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSY 168
I++T ++ F+E+ L+ IL + E+ ++ +KY + + L + + +
Sbjct: 137 IVLTDDIFNLYVFFEIAALAQVGVILCSGVERSYETALKYMMIGGVAAPM-LLLGVAILL 195
Query: 169 SFLGSL---DAMTYPNLKSLPSSATLLLYASFLIAF--MAKSGIVPFHFWVPSTY-KVAP 222
+ G++ D + + + L L AS LI F + +G+ PFH + Y K P
Sbjct: 196 ALTGNVNISDIVFSMRSGLVNPGSPLFLLASSLILFGWLYGTGLPPFHTIKSAVYSKALP 255
Query: 223 SNISSLLAGAMEKIAVFGLIRI-MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAK 281
+ L A ++ L+ + M+ +P + +L G V +G AL ++D +
Sbjct: 256 HGAALLQAFSVFTFTALALVILRMFYHMPLVRWAMVFFSLAGMV---LGISMALMQTDLR 312
Query: 282 KLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
+++ + ++G++GYI +G+G+G A + AG+F A+N +L +FL G++ Y
Sbjct: 313 RMIGFLAVGELGYIGIGLGLGT-------AASISAGLFQAVNEALITACIFLGFGTIFYM 365
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
TG ++ + +GGL +L+ ++GVPPFN F SK ++ A +G L
Sbjct: 366 TGRSDPERIGGLIAYKPGLAGLVMLSGFIMAGVPPFNVFQSKLMLIQASIQAGFPEL--- 422
Query: 402 AVLAVFISAVTLASFIK-FYTSQFGGESERYRDVSE-VPLSMVVPQLILSSLCLIIGIFP 459
V+ + +S VT +F++ FY+ E E SE VP S V ++L +C +G+ P
Sbjct: 423 GVVMILLSIVTFMTFLRAFYSVYLRPEPEGMELESESVPRSTVFSLVVLILICTALGLAP 482
>pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
humilis chloroplast (fragment) >gi|755845|gb|AAA64696.1|
(U21977) NADH dehydrogenase F [Lithachne humilis]
Length = 706
Score = 131 bits (327), Expect = 2e-29
Identities = 106/387 (27%), Positives = 180/387 (46%), Gaps = 41/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++I+SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYISFFNT---SMLGLVISSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 197 FRDLFKIANNWIPDNGINSLLTTLCAFLLFLGAVAKSAQFPLHIWLPDAME-GPTPISAL 255
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
+ AM +F L R+ +P P + + V+L+G +TL +G AL + D K+ LAY +
Sbjct: 256 IHAAMVAAGIFLLARLFPLFVPLPLIMSF-VSLVGTITLFLGATLALAQRDIKRSLAYST 314
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 315 MSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVGY 364
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 365 SPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSP 420
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 421 FFGIIAFFTAGLTAFYMFRIYLLTFDG 447
>pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N NMA2228
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380847|emb|CAB85439.1| (AL162758) NADH
dehydrogenase chain N [Neisseria meningitidis Z2491]
Length = 481
Score = 131 bits (326), Expect = 3e-29
Identities = 124/471 (26%), Positives = 219/471 (46%), Gaps = 31/471 (6%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFS 65
LAL ++L + + K+ + A A +A ++V L + G+ + DG S
Sbjct: 18 LALLVLLLLADLWVSDDKRRWTHYGALATVAVTAVVQLAVWEQGSTSSFNGMYI-ADGMS 76
Query: 66 LIFMLILGILGFSASLYSIPYME-RHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFW 124
+ ++L L F+ +Y+ PY + R K Y ++ A LL M +++ + +
Sbjct: 77 RLAKMVLYALTFALFVYARPYNQVRGIFKGEFYTLSLFA-LLGMGVMVSAGHFLTAYIGL 135
Query: 125 ELMTLSSFILITWDEKD---FDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD--AMTY 179
EL++L+ + LI + +KY++ + L + L + + Y GSL+ +
Sbjct: 136 ELLSLALYALIALRRDSGFAAEAALKYFV-LGALASGLLLYGISMVYGATGSLEFAGVLA 194
Query: 180 PNLKSLPSSATLLLYASFLIAFMA-KSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAV 238
+ + L L F++ +A K G VPFH WVP Y AP+++++L+ A + AV
Sbjct: 195 SSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAV 254
Query: 239 FGLIRIMYTALPT-PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
RI+ T L T + ALL A +L VG L A+ +++ K++LAY ++ MG+I L
Sbjct: 255 VFAFRILVTGLGTVHHDWSLMFALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILL 314
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF-----LSAGSVEYATGETNLDNLGG 352
GA+G AG+++A+ ++L + F LS G E N+ +L G
Sbjct: 315 AF--------MAGAVGFAAGLYYAITYALMAAAGFGVLMVLSDGDNEC----ENISDLAG 362
Query: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT 412
L + W LL +++G+PP GF +K+ + A G + LS V AV +S +
Sbjct: 363 LNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGYVWLS---VFAVVMSLIG 419
Query: 413 LASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVV 463
+++ + ES R R + + + L ++ GI P V+
Sbjct: 420 AFYYLRVVKVMYFDESGRARPTVGGNNAAKFLLSVNALLLVLWGIMPQTVI 470
>gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex mertensii]
Length = 711
Score = 131 bits (326), Expect = 3e-29
Identities = 113/424 (26%), Positives = 192/424 (44%), Gaps = 56/424 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 91 IDSLTSIMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 148
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI-KYYIAMHILTTFPLFISLGVSYSFLGSLDAM 177
FWE++ + S++LI W + + + + F L + + Y +GS +
Sbjct: 149 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAXVTNRVGDFGLLLGILAFYWIIGSFEFR 208
Query: 178 TYPNLKS-------LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL- 229
+ + + S T L + +AKS P H W+P + P+ IS+L+
Sbjct: 209 DLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISALIH 267
Query: 230 AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
A M VF + R+ L TP +I ++++L+G +TL +G AL + D K+ LAY ++
Sbjct: 268 AATMVAAGVFLVARLFPLLLITP-NIMHIISLIGLITLFLGATLALAQLDIKRSLAYSTM 326
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT------- 342
Q+GYI L +GIG S A +FH + H+ K LFL +GS+ ++
Sbjct: 327 SQLGYIILALGIGSSR----------AALFHLITHAYSKALLFLGSGSIIHSMEPVVGYS 376
Query: 343 --GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------- 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 377 PYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDXILSNSWLYSPIFGII 436
Query: 387 ------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEVP 438
TA Y +++F L ++ FY+ G+ S+R +P
Sbjct: 437 TYFTTGLTAFYMXXXYLINFDGXLXIYFXGYXXXKTXLFYSISLWGKSMSKRSNTNRNLP 496
Query: 439 LSMV 442
LS++
Sbjct: 497 LSII 500
>gb|AAF08189.1| (AF130233) NADH dehydrogenase subunit F [Aquilegia bicolor]
Length = 729
Score = 130 bits (324), Expect = 4e-29
Identities = 126/463 (27%), Positives = 212/463 (45%), Gaps = 64/463 (13%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +P+ + + +L + K + AF ++ LSIV L F++ ++ G P+Y
Sbjct: 7 LPVPIAIGVGLLLVPTATKKIRRIWAFPSVLLLSIVML-FSVDLSIQQINGSPIYQYVRS 65
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I ++++ +G +YS YM G ++ AY F
Sbjct: 66 WTINNDFSLDFGYLIDPLTSIMLILITTVGTMVLIYSDNYMSHDRG--YLRFFAYMGFFN 123
Query: 107 SMFLILIT-SNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+T SNL+ FWEL+ + S++LI W + K ++ + F LF+
Sbjct: 124 ASMLGLVTCSNLIQIYIFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRV-GDFGLFL 182
Query: 163 SLGVSYSFLGSLDAMTYPNL------KSLPSSATLLLYASFL-IAFMAKSGIVPFHFWVP 215
+ Y GS + + + +S L L AS L + +AKS P H W+P
Sbjct: 183 GILGLYWVTGSFEFRDLFEIVNNLIDNNGANSLFLTLCASLLFVGAIAKSAQFPLHVWLP 242
Query: 216 STYKVAPSNISSLLAGAMEKIAVFGLIRIM---YTALPTPKSIGYLVALLGAVTLTVGTL 272
+ P+ IS+L+ A A F L+ + +TA+P SI +++L+G +T+ +G
Sbjct: 243 DAME-GPTPISALIHAATMVAAGFFLVARLLPLFTAIP---SIMNIISLVGIITILLGAT 298
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GYI L +G+G A +FH + H+ K LF
Sbjct: 299 LALAQRDIKRSLAYSTMSQLGYIMLALGMG----------SYRAALFHLITHAYSKALLF 348
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS+ ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 349 LGSGSIIHSMETLVGYSPDKSQNMALMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSK 408
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A F + +T + Y F G
Sbjct: 409 DEI----INDSWVYSPIFAIIACFTAGLTAFYMFRIYLLTFEG 447
>pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Micraira
lazaridisii chloroplast (fragment)
>gi|755837|gb|AAA64777.1| (U21972) NADH dehydrogenase F
[Micraira lazaridisii]
Length = 702
Score = 129 bits (322), Expect = 8e-29
Identities = 118/437 (27%), Positives = 199/437 (45%), Gaps = 63/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI ALVF++ ++ G +Y ID + I +++
Sbjct: 35 AFPSVLFLSI-ALVFSVHLSIQQIKGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLIL 93
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 94 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 150
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY------- 179
S++LI W + K ++ + F L + + + GSL+
Sbjct: 151 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 209
Query: 180 -PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAV 238
PN + TL + FL A +AKS P H W+P + P+ IS+L+ M +
Sbjct: 210 IPNNEMNSLLTTLCAFFLFLGA-VAKSAQFPLHIWLPDAME-GPTPISALIHATMVAAGI 267
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 268 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 326
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 327 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 376
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T A L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 377 MGGLRKYVPITRTAFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 432
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 433 GLTAFYMFRIYLLTFDG 449
>sp|P57262|NUOL_BUCAI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|10038847|dbj|BAB12882.1| (AP001118) NADH
dehydrogenase I chain L [Buchnera sp. APS]
Length = 614
Score = 129 bits (322), Expect = 8e-29
Identities = 111/425 (26%), Positives = 204/425 (47%), Gaps = 32/425 (7%)
Query: 60 YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVW 119
++DG SL + ++ +G ++S YM G+ +A N F+ SM ++++ N ++
Sbjct: 80 FLDGLSLSMLFVITGVGLLIHIFSSWYMRYKEGQSRFFAYT-NLFIASMSVLVLADNFLF 138
Query: 120 FVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY 179
WE +++ S++LI + + + + A + +F+ +G+ + ++ +
Sbjct: 139 MYLGWEGVSVCSYLLIGFYYTELKNNLCAFKAFILTRVSDVFLMIGM-FLIYREFNSFNF 197
Query: 180 PNLKSLPSSATL--LLYASFLIAFM-----AKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
+K L S + Y ++ F+ KS +P W+ S V P+ +S+L+ A
Sbjct: 198 QEIKFLSSFLNVENFYYLDYITLFLLLGVIGKSAQLPLQTWL-SDAMVGPTPVSALIHAA 256
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
M V+ + R + L TP I YLV L+G +T+ V ++ AL + D K++LAY ++ Q
Sbjct: 257 TMVTAGVYLIARTHFLFLLTP-GILYLVGLIGTLTILVSSISALVQKDIKRILAYSTMSQ 315
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGS-VEYATGETNLDNL 350
+GY++L +G+ A I H + H++FK LFLSAGS ++ E N+ +
Sbjct: 316 IGYMFLALGV----------KAWSAAITHLIMHAIFKALLFLSAGSLIKSCKNEKNIFKM 365
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFN-GFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
GGL +++ + ++ ++ ++ P GF SK I + SG + F ++ +F S
Sbjct: 366 GGLRKQLPFLYISFIVGGASLVSFPLITAGFYSKGNILFSVLKSG--CIDF-FIIGLFCS 422
Query: 410 AVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG--IFPAL--VVPL 465
+T + F G++ D S L +P +L L + G I P L V PL
Sbjct: 423 FLTAIYTFRMIFVIFHGKNIHTAD-SSTNLQHNIPLFVLLLLSTVFGSYISPPLSDVFPL 481
Query: 466 INEPI 470
PI
Sbjct: 482 SYTPI 486
>emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex, subunit.
[Streptomyces coelicolor A3(2)]
Length = 967
Score = 129 bits (322), Expect = 8e-29
Identities = 120/408 (29%), Positives = 194/408 (47%), Gaps = 30/408 (7%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+D + + +L+ +G +Y Y + + +A AF +M +++ +LV
Sbjct: 72 LDALAELMVLLAAGVGTLVLVYCASYFDDRSRQLGRFAGNLLAFTGAMLGLVLADDLVLL 131
Query: 121 VFFWELMTLSSFILI--TWDEKDFDPGIKYYIAMHILTTFPLF-ISLGVSYSFLGSLDAM 177
FWEL T+ S++LI T D K A+ LT L +++ V + LG +A
Sbjct: 132 YIFWELTTVFSYLLIGQTSDHKR-----NRRSALQALTVTALGGLTMLVGFLLLGH-EAG 185
Query: 178 TYPNLKSL-----PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
TY L PS+A L+ ++KS I PF W+P+ AP+ +S+ L A
Sbjct: 186 TYRVSAILADPPAPSAALSTAVVLILVGALSKSAIWPFSLWLPNAM-AAPTPVSAYLHAA 244
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
AM K V+ L+ + A L+ +LG+VT+ +G ALR D K +LAY ++ Q
Sbjct: 245 AMVKAGVY-LVARLAPAFADVTPWRPLLLVLGSVTMLLGGWRALRLHDLKLVLAYGTVSQ 303
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLG 351
+G + + G G D+ L A M G H+LFK LFL G V++ATG +L L
Sbjct: 304 LGLLTVLTGAGRH-DTGLAATAMILG------HALFKAPLFLVTGIVDHATGTRDLRKLS 356
Query: 352 GLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTA--GYNSGDMVLSFGAVLAVFIS 409
GL R+ +LA +++ VPP GF +K + A ++GD + AV S
Sbjct: 357 GLGRRLPAVCAVAVLAGASMAAVPPLLGFSAKEAAFQALLDGSTGD---RWALAAAVVGS 413
Query: 410 AVTLASFIKFYTSQFGGESERYRDVSE-VPLSMVVPQLILSSLCLIIG 456
A+T A +++ F + + VP + + P +L+ CL++G
Sbjct: 414 ALTTAYTLRYLWGAFARKPGLPDTAAHPVPAAFLAPPAVLALACLVLG 461
>gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina]
>gi|10444166|gb|AAG17740.1|AF288090_16 (AF288090) NADH
dehydrogenase subunit 5 [Rhodomonas salina]
Length = 665
Score = 129 bits (321), Expect = 1e-28
Identities = 122/466 (26%), Positives = 211/466 (45%), Gaps = 44/466 (9%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWF 120
D S+ ++ ++ LYS YM P + + ++Y + L+L+TS N +
Sbjct: 79 DSLSISMCCVVTLISGLVHLYSTVYMSHDPHQ--IRFMSYLSLFTFFMLMLVTSDNFLQL 136
Query: 121 VFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSF--LGSLDAMT 178
F WE + L SF+LI + AM + + ++L + + F S+D
Sbjct: 137 FFGWEGVGLCSFLLINFWFTRLQANKAAIKAMVVNRIGDIGLALSIFFLFNTFKSVDFAV 196
Query: 179 Y---------PNLKSLPSSATLLLYASFLI--AFMAKSGIVPFHFWVPSTYKVAPSNISS 227
N+ L ++++AS L+ A + KS + H W+P + P+ +S+
Sbjct: 197 IFCLIPHFFDSNVFFLTFQNNVVVFASALLFLAAIGKSAQLGLHTWLPDAME-GPTPVSA 255
Query: 228 LL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
L+ A M VF +IR +P+ + ++V LG+ T L ++DAKK++AY
Sbjct: 256 LIHAATMVTAGVFLIIRCSPIFEFSPEIL-FIVVFLGSATCFFAGTIGLVQNDAKKIIAY 314
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGET 345
+ Q+GY++ G+ G FH NH+ FK LFLSAGS+ +A E
Sbjct: 315 STCSQLGYMFFACGLS----------NYSVGFFHLFNHAFFKALLFLSAGSIIHALNNEQ 364
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSF----G 401
+L +GGL + + T ++ SLA+ G P GF SK +I + +++ SF G
Sbjct: 365 DLRKMGGLLKVLPLTYSVFVIGSLALMGTPFLAGFYSKDIILETAFVRYNLIGSFAFWIG 424
Query: 402 AVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG----- 456
A F S ++ + + G Y+ + E M+ P ++LS + IG
Sbjct: 425 CFAAFFTSFYSIRLLYLVFLIRPNGFKASYQGIHEPNFGMLFPLILLSIFSIFIGFLTRE 484
Query: 457 IFPALVVPLINEPIGA-PISTSLYLNFDSTAFSPLIFGLLIVTLAF 501
+F P + I P++T+ L+F+ F P+ + LL + +F
Sbjct: 485 LFIGFGTPFWSSSIFVLPVNTTT-LDFE---FMPIFYKLLPLGFSF 526
>gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex scirpoidea]
Length = 682
Score = 129 bits (321), Expect = 1e-28
Identities = 112/424 (26%), Positives = 188/424 (43%), Gaps = 56/424 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
ID + I + ++ +G + +YS YM +A N F SM ++ +SNL+
Sbjct: 76 IDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYSRFFAYL-NLFNASMLGLVTSSNLIQI 134
Query: 121 VFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAM 177
FWE++ + S++LI W + K ++ + + F L + + Y +GS +
Sbjct: 135 YIFWEIVXICSYLLIXFWFTRPLXANACQKAFVX-NXIGXFGLLLGIXXXYWIIGSFEFR 193
Query: 178 TYPNLKS-------LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL- 229
+ + + S T L + +AKS P H W+P + P+ S+L+
Sbjct: 194 YLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPXSALIH 252
Query: 230 AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY ++
Sbjct: 253 AATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLVLGATLALAQLDIKRSLAYSTM 311
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT------- 342
Q+GYI L +GIG S A +FH + H+ K LFL +GS+ ++
Sbjct: 312 SQLGYIILALGIGXSR----------AALFHLITHAYSKALLFLGSGSIIHSMEPVVGYS 361
Query: 343 --GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------- 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 362 PYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIFGII 421
Query: 387 ------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSE--VP 438
TA Y L F L + + FY+ G+S R ++ +P
Sbjct: 422 TYFTTGLTAFYMFXVYXLIFDGYLXIHFQGYSSTKTNLFYSISLWGKSMSKRSNTDRNLP 481
Query: 439 LSMV 442
LS++
Sbjct: 482 LSII 485
>gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays]
Length = 701
Score = 129 bits (321), Expect = 1e-28
Identities = 114/436 (26%), Positives = 197/436 (45%), Gaps = 61/436 (13%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVF 239
+ S T L + +AKS P H W+P + P+ IS+L+ AM +F
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAAMVAAGIF 266
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +
Sbjct: 267 LLARLLPLFISLPLIMSF-ISLIGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLAL 325
Query: 300 GIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNL 350
GIG A +FH + H+ K LFL +GSV ++ N+ +
Sbjct: 326 GIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLM 375
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 GGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTAG 431
Query: 411 VTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 LTAFYMFRIYLLTFDG 447
>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
I, N subunit [Neisseria meningitidis MC58]
Length = 480
Score = 129 bits (320), Expect = 1e-28
Identities = 114/426 (26%), Positives = 200/426 (46%), Gaps = 28/426 (6%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFS 65
L+L ++L + + K+ + A A +A ++V L + G+ + DG S
Sbjct: 18 LSLLVLLLLADLWVSDDKRPWTHYGALATVAVTAVVQLAVWEQGSTSSFNGMYI-ADGMS 76
Query: 66 LIFMLILGILGFSASLYSIPYME-RHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFW 124
+ ++L L F+ +Y+ PY + R K Y ++ A LL M +++ + +
Sbjct: 77 RLAKMVLYALTFALFVYAKPYNQVRGIFKGEFYTLSLFA-LLGMSVMVSAGHFLTAYIGL 135
Query: 125 ELMTLSSFILITWDEKD---FDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD--AMTY 179
EL++L+ + LI + +KY++ + L + L + + Y GSL+ +
Sbjct: 136 ELLSLALYALIALRRDSGFAAEAALKYFV-LGALASGLLLYGISMVYGATGSLEFAGVLA 194
Query: 180 PNLKSLPSSATLLLYASFLIAFMA-KSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAV 238
+ + L L F++ +A K G VPFH WVP Y AP+++++L+ A + AV
Sbjct: 195 SSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKIAAV 254
Query: 239 FGLIRIMYTALPT-PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
RI+ T L T + ALL A +L VG L A+ +++ K++ AY ++ MG+I L
Sbjct: 255 VFTFRILVTGLGTVHHDWSLMFALLAAASLLVGNLAAIMQTNIKRMFAYSTVSHMGFILL 314
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF-----LSAGSVEYATGETNLDNLGG 352
GA+G AG+++A+ ++L + F LS G E N+ +L G
Sbjct: 315 AF--------MAGAVGFAAGLYYAITYALMAAAGFGVLMVLSDGDNEC----ENISDLAG 362
Query: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT 412
L + W LL +++G+PP GF +K+ + A G + LS AV+ I A
Sbjct: 363 LNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFGVIMALLKQGHVWLSVFAVIMSLIGAFY 422
Query: 413 LASFIK 418
+K
Sbjct: 423 YLRVVK 428
>pir||T13074 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Eustachys
petraea chloroplast (fragment) >gi|726172|gb|AAA64208.1|
(U22004) NADH dehydrogenase F [Eustachys petraea]
Length = 703
Score = 129 bits (320), Expect = 1e-28
Identities = 103/388 (26%), Positives = 183/388 (46%), Gaps = 42/388 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + ++Y +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFIYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T+L + +AKS P H W+P + P+ IS+L
Sbjct: 197 FRDLFKIANNWIPNNGINSLLTILCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 255
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
+ A M ++ +F L R++ + P + + ++L+G +TL +G AL + D K+ LAY
Sbjct: 256 IHAATMVRVRIFLLARLLPLFISIPFIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYS 314
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 315 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVG 364
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T LL +L++ G+PP F SK I + + +
Sbjct: 365 YSPDKSQNMVLMGGLKKYVPITRTTFLLGTLSLCGIPPLACFWSKDEILSNSW----LYS 420
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 421 PFFGIIASFTAGLTAFYMFRIYLLTFDG 448
>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
sp. NRC-1]
Length = 380
Score = 128 bits (319), Expect = 2e-28
Identities = 94/328 (28%), Positives = 159/328 (47%), Gaps = 35/328 (10%)
Query: 113 ITSNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTF--PLFISLGVSY 168
+T++L F E+ L+++ L+ D + +KY + + TF LF+ LG+ Y
Sbjct: 12 VTADLFNMYVFLEITGLTAYALVAAGEDSRSTVAALKYLL----VGTFGASLFL-LGIGY 66
Query: 169 SFLGSLDAMTYPNLKSLPSSATLLLYASF---LIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
+++G+ L + +L A+F ++ K + P H W P Y AP +
Sbjct: 67 AYVGTGTLNMADLAAKLADADPVLAQAAFALIVVGLFIKVAVFPLHTWQPDAYAGAPDTV 126
Query: 226 SSLLAGAMEKIAVFGLIRIMYTAL------PTPKSIGYLVALLGAV-TLTVGTLYALRES 278
S+L++ + +A + L+R++YT TP + L+ GAV ++ G+L A+ +S
Sbjct: 127 SALISALVSTVAAYALLRVVYTVFGAGFLDSTPVARAILIG--GAVVSIVAGSLLAVSQS 184
Query: 279 DAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV 338
+ K++LAY S+ Q G I I IG + H + H++ KG LFL+AG V
Sbjct: 185 EIKRVLAYSSVSQFGLILAAIAIG-------NDTALTGAAIHLVGHAVMKGGLFLTAGVV 237
Query: 339 EYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
TG +D GLA+R A + ++++ GVPP GF KW I +G
Sbjct: 238 ATETGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKWYIAIGAAEAGSW-- 295
Query: 399 SFGAVLAVFISA--VTLASFIKFYTSQF 424
A+LAV +++ +TLA F++ F
Sbjct: 296 ---ALLAVIVASTLLTLAYFLRLVERMF 320
>gb|AAF78991.1| (L75864) NADH dehydrogenase F [Glomeropitcairnia penduliflora]
Length = 634
Score = 128 bits (318), Expect = 2e-28
Identities = 107/387 (27%), Positives = 180/387 (45%), Gaps = 40/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVW 119
ID + I +++ +G +YS YM G ++ AY +F + L L+TS NL+
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHDQG--YLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
FWEL+ + S++LI W + K ++ + F L + + Y GSL+
Sbjct: 136 IYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFYWITGSLEF 194
Query: 177 MTYPNLKS--LPSSATLLLYASF-----LIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
P + + + ++ L+A+ + +AKS P H W+P + P+ IS+L+
Sbjct: 195 RDLPEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAME-GPTPISALI 253
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M +F + R++ + P + + ++L+G +TL +G AL + D KK LAY +
Sbjct: 254 HAATMVAAGIFLVARLLPLFIVIPYIMNF-ISLIGVITLLLGATLALAQRDIKKSLAYST 312
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GYI L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 313 MSQLGYIMLALGIG----------SYRAALFHLITHAYSKALLFLGSGSIIHSMEPIVGY 362
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + T LL +L++ G+PP F SK I N +
Sbjct: 363 SPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDI----LNDSWLYSP 418
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
AV+A F + +T + Y F G
Sbjct: 419 IFAVIAYFTAGLTAFYMFRVYLLTFDG 445
>gi|11467581 NADH dehydrogenase, subunit 5 [Allomyces macrogynus]
>gi|1709391|sp|P50365|NU5M_ALLMA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 >gi|2147767|pir||S63645 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Allomyces macrogynus mitochondrion
>gi|604921|gb|AAB05846.1| (U17010) NADH dehydrogenase,
subunit 5 [Allomyces macrogynus]
>gi|1236411|gb|AAC49228.1| (U41288) NADH dehydrogenase,
subunit 5 [Allomyces macrogynus]
Length = 641
Score = 128 bits (318), Expect = 2e-28
Identities = 137/538 (25%), Positives = 228/538 (41%), Gaps = 57/538 (10%)
Query: 6 LALPLVLFI-LGMLG---GLSKKAFKVSSAFAALASLSI-----VALVFNLKPVE----- 51
+ LPL F+ +G++G G+ S + A LS+ + L+ NL P+
Sbjct: 6 ITLPLFAFLTVGVIGRKLGVRGSQIITSLSIIISAILSLYGFYEIVLLNNLGPITIYLSP 65
Query: 52 -----GKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
G Y D S+ +++ + LYSI YM+ P + ++ Y +
Sbjct: 66 WMNVIGAHADWAFYFDSISITMCVVVSSISSLVHLYSIGYMQGDPHIQRFFS--YLSLFT 123
Query: 107 SMFLILITSNLVWFVFF-WELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLG 165
L+L+T N +F WE + +SS++LI + AM + L LG
Sbjct: 124 FFMLLLVTGNNYLLMFVGWEGIGVSSYLLINFWFTRIQANKASMQAMLVNRVGDLGFVLG 183
Query: 166 VSYSF--LGSLDAMTYPNLK-SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAP 222
+ F GS D T + L ++ LIA + KS + H W+PS + P
Sbjct: 184 LFGIFWLFGSSDYDTVGIIAYKLDEQYITIVTLFLLIAAIGKSAQLGLHTWLPSAME-GP 242
Query: 223 SNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAK 281
+ +S+L+ A + V+ ++R P S+ V ++G++T L ++D K
Sbjct: 243 TPVSALIHAATLVTAGVYLILRSSPLFELAPTSL-ICVCVIGSLTAIFAATTGLFQNDLK 301
Query: 282 KLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
+++AY + Q+GY+ +G+ FH NH+ FK LFLSAGS+ +A
Sbjct: 302 RVIAYSTCSQLGYMVFALGLSQ----------YEVAFFHLFNHAYFKALLFLSAGSIIHA 351
Query: 342 T-GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDM 396
E ++ +GGL + +T L+ SL++ +P G+ SK I Y +G
Sbjct: 352 LHDEQDMRKMGGLVNILPFTYTMILIGSLSLMALPFLTGYYSKDAILEVAYGQFLVTGTF 411
Query: 397 VLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG 456
G + A + + + I + G + Y + E PL M +P +LS + IG
Sbjct: 412 TYWLGTITATITAFYSSKALILGFFGTPNGSKKIYNTIHEAPLIMSIPLFLLSICSIFIG 471
Query: 457 IFPALVVPLINEPIGAPISTSL------YLNFD----STAFS----PLIFGLLIVTLA 500
+ +I IS + YL FD ST+F PL LL ++LA
Sbjct: 472 YITNKHLSVIGIGSSGIISGGVGTLRDHYLGFDIEFISTSFGVQFYPLFASLLGISLA 529
>emb|CAB89017.1| (AL353870) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 579
Score = 128 bits (318), Expect = 2e-28
Identities = 79/302 (26%), Positives = 150/302 (49%), Gaps = 12/302 (3%)
Query: 96 VYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILIT--WDEKDFDPGIKYYIAMH 153
V+ AY + + + +LV +E+M ++SF+L+T G Y I +
Sbjct: 113 VFHPAYLILVAGVSCTFLAGDLVNLYVGFEIMLVASFVLLTIGGTATRIRAGSTYVI-IS 171
Query: 154 ILTTFPLFISLGVSYSFLGSLD-AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHF 212
+ ++ +++ ++Y+ G+++ A L+ +P LL A L F K+ + P
Sbjct: 172 LFSSVLFLVAIAMTYAVAGTVNLAQLAERLQEVPPGVRTLLEAMLLTVFAIKAAVFPLAA 231
Query: 213 WVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
W+P +Y AP+ ++++ AG + K+ V+ ++R P + +G L+ L ++ VG L
Sbjct: 232 WLPDSYPTAPAPVTAVFAGLLTKVGVYSMLRTQTLLFPGHR-LGDLLMLAALASMVVGIL 290
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
A+ ++D K++L++ I +GY+ GI + G G+ I + +H + +LF
Sbjct: 291 GAVAQTDLKRVLSFTLISHIGYMVFGIALA-------GGGGISGAIVYVAHHITVQTTLF 343
Query: 333 LSAGSVEYATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN 392
L AG +E G T L LGGLA + + ++ ++G+PP +GF+ K + AG
Sbjct: 344 LVAGLIERRDGTTELTRLGGLARTAPLLAVLFFVPAMNLAGIPPLSGFIGKLGLMRAGVA 403
Query: 393 SG 394
G
Sbjct: 404 DG 405
>pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Olyra
latifolia chloroplast (fragment)
>gi|755835|gb|AAA64776.1| (U21971) NADH dehydrogenase F
[Olyra latifolia]
Length = 704
Score = 127 bits (317), Expect = 3e-28
Identities = 105/387 (27%), Positives = 178/387 (45%), Gaps = 41/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++I+SNL+
Sbjct: 82 IDPLTSIMLILITTVGVLVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVISSNLI 138
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 139 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 197
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 198 FRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 256
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
+ M +F L R+ + P + + V+L+G +TL +G AL + D K+ LAY +
Sbjct: 257 IHATMVAAGIFLLARLFPLFISLPLIMSF-VSLVGTITLFLGATLALAQRDIKRSLAYST 315
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GY+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 316 MSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGY 365
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 366 SPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSP 421
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 422 FFGIIASFTAGLTAFYMFRIYLLTFDG 448
>gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]
>gi|6692639|gb|AAF24782.1|U17009_14 (U17009) NADH
dehydrogenase subunit 2 [Phytophthora infestans]
Length = 497
Score = 127 bits (317), Expect = 3e-28
Identities = 119/489 (24%), Positives = 222/489 (45%), Gaps = 40/489 (8%)
Query: 5 ELALPLVLFILGMLGGLSKK--------AFKVSSAFAALASLSIVALVFNLKPVEGKLLG 56
E L +L IL + G KK K + L ++ L N+ + +L
Sbjct: 17 EFFLTTILLILLLFGVFYKKNQNMQKILIIKNITTIIIYLLLILLILTLNITNISNNILN 76
Query: 57 LPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSN 116
+ I+ F+ +IL + L Y+ + + + LL + L++ T++
Sbjct: 77 GVLIINNFTQFIKVILILSTIICFLIQQKYLIQQKINAYEINILMLISLLGLMLLVSTNH 136
Query: 117 LVWFVFFWELMTLSSFILITWDEKDF---DPGIKYYIAMHILTTFPLFISLGVSYSFLGS 173
L+ EL +LS +IL + +K + G+KY+I I + F LF S + Y+ GS
Sbjct: 137 LITLYLAIELQSLSFYILTSTQKKSILSIEAGLKYFILGSIASGFILFGS-SIIYAITGS 195
Query: 174 LDA----MTYPNLKSLPSSATLLLYASF-----LIAFMAKSGIVPFHFWVPSTYKVAPSN 224
L+ + N+ L + +L+ S+ L+ + K G PFHFW+P Y+ AP+N
Sbjct: 196 LNFNNIFLILSNINFL-ENINILISLSYGLIFILVGILFKVGASPFHFWLPDVYEGAPNN 254
Query: 225 ISSLLAGAMEKIAVFG-LIRIMYTALPTPKSIGYLVA----LLGAVTLTVGTLYALRESD 279
ISS A + KIA G LIR+ + +I Y ++ +++ +G L AL++
Sbjct: 255 ISSFFA-IVPKIAFIGILIRLFFEIF---FNISYFFEIFFYIISFLSMLIGALSALQQKK 310
Query: 280 AKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVE 339
K+LLAY SI +G+I +G + + P L + I ++N SL ++ ++
Sbjct: 311 IKRLLAYSSISHVGFILIGFTSNMLNNIPFILLYVLIYIITSINLWTSYLSLNINHKPIK 370
Query: 340 YATGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
Y T +N+ + K + ++ +++G+PP GF SK I+ + + L
Sbjct: 371 YLTDLSNIHTIN------KLIAIIIIINIFSLAGIPPLAGFFSKLFIFFSAIKNNYFSLV 424
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
F +L IS ++ ++K + + R +S++ + +I + L + I+P
Sbjct: 425 FFGIL---ISVLSSFYYLKIIKIIYFEKILRKMYISKINKMQSIVLIINTQFILFLFIYP 481
Query: 460 ALVVPLINE 468
+++ +N+
Sbjct: 482 NIILVNLNK 490
>gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880796|gb|AAD54889.1|AF137379_112
(AF137379) subunit 4 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 500
Score = 127 bits (317), Expect = 3e-28
Identities = 112/446 (25%), Positives = 202/446 (45%), Gaps = 66/446 (14%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+DG S+ +L+ G + A+L + P + ++P + +A L +F++ +L+ F
Sbjct: 82 VDGLSMPLVLLTGFITTLATLAAWP-VTKNPRLFYFLMLAMYTGQLGVFVV---QDLLLF 137
Query: 121 VFFWELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY 179
WEL + ++L++ W K ++ T F L+ +LG + LG+L M +
Sbjct: 138 FLMWELELIPVYLLVSCWGGKK---------RLYAATKFILYTALGSIFILLGAL-TMPF 187
Query: 180 PNLK--------------SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
++ SLP +LLY FLIA+ K +P H W+P T+ A +
Sbjct: 188 MGIQGVTFDMSTLAYREYSLP--VEILLYTGFLIAYGVKLPAIPVHTWLPDTHGEAHYST 245
Query: 226 SSLLAGAMEKIAVFGLIRIMYTALPTPKSI--GYLVALLGAVTLTVGTLYALRESDAKKL 283
LLAG + K+ + LIRI LP ++ +L+ +G V + L + + + K+
Sbjct: 246 CMLLAGILLKMGGYALIRINMNMLPHAHALFSPWLIG-VGVVNIIYAALTSFAQRNLKRK 304
Query: 284 LAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG 343
+AY S+ MG++ +GIG L G+ + ++H L SLF AG+ T
Sbjct: 305 IAYSSVSHMGFVLIGIG-------SLSEAGLNGAMLQMISHGLIGASLFFLAGTTYDRTR 357
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAV 403
L+ +GGLA M T SLA +P +GF ++ L++ S +F A+
Sbjct: 358 TLVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSPTFRAI 417
Query: 404 LAVF------ISAVTLASFIK--FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLII 455
+ VF ++ + L S ++ FY G P+ ++ + +
Sbjct: 418 MTVFEAIGILLTPIYLLSMLRQLFYGRSIGR-----------------PKALIDAGPREV 460
Query: 456 GIFPALVVPLINEPIGAPISTSLYLN 481
+ L+VP++ I ++T++Y+N
Sbjct: 461 FVVSCLLVPILGIGIYPKLATAIYVN 486
>pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
pauciflora chloroplast (fragment)
>gi|755847|gb|AAA64697.1| (U21978) NADH dehydrogenase F
[Lithachne pauciflora]
Length = 703
Score = 127 bits (317), Expect = 3e-28
Identities = 106/388 (27%), Positives = 180/388 (46%), Gaps = 42/388 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++I+SNL+
Sbjct: 80 IDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYISFFNT---SMLGLVISSNLI 136
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 137 QIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 195
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 196 FRDLFKIANNWIPDNGINSLLTTLCAFLLFLGAVAKSAQFPLHIWLPDAME-GPTPISAL 254
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
+ A M +F L R+ +P P + + V+L+G +TL +G AL + D K+ LAY
Sbjct: 255 IHAATMVAAGIFLLARLFPLFVPLPLIMSF-VSLVGTITLFLGATLALAQRDIKRSLAYS 313
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 314 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVG 363
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 364 YSPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYS 419
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 420 PFFGIIAFFTAGLTAFYMFRIYLLTFDG 447
>gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea]
>gi|7432547|pir||T11231 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - red alga (Porphyra purpurea)
mitochondrion >gi|4106943|gb|AAD03110.1| (AF114794) NADH
dehydrogenase subunit 5 [Porphyra purpurea]
Length = 677
Score = 127 bits (316), Expect = 4e-28
Identities = 136/549 (24%), Positives = 241/549 (43%), Gaps = 81/549 (14%)
Query: 6 LALPLVLFILGMLGG--LSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYI-- 61
+ALPL+ ++ LGG L ++ + S + L + + F E L G+P YI
Sbjct: 6 IALPLLGTLITGLGGRWLGREGSNIFSTTCVILCLFLSLVSF----YEVGLCGVPCYISI 61
Query: 62 -----------------DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
D + ++++ + +YSI YME P + F
Sbjct: 62 SPWISSGALNISWGFLFDSLTTTMLVVITSISSLVHIYSIQYMEYDPHCPRFMSFL-EIF 120
Query: 105 LLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISL 164
M L++ N V WE + L+S++LI + A+ + +SL
Sbjct: 121 TFFMLLLVTADNFVQMFLGWEGVGLASYLLINFWYTRLCANQAAVKALIVNRVGDFGLSL 180
Query: 165 GVSYSFL--GSLDAMTYPNLKSLPSSATLLLYASF-----------LIAFMAKSGIVPFH 211
G+ F GS+D +L + S+ ++ ++ ++ LI + KS + H
Sbjct: 181 GIFTIFFLFGSVDYEVVFSLADVYSNHSIYIFGNYINTLTLIGVFLLIGAVGKSAQLGLH 240
Query: 212 FWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG 270
W+P + P+ +S+L+ A M VF ++R +P + +L+ +LG+ T
Sbjct: 241 TWLPDAME-GPTPVSALIHAATMVTAGVFLIVRCSPLINLSPNVL-FLITILGSSTAFFA 298
Query: 271 TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGS 330
++ + ++D K+++AY + Q+GY+ G+ G+FH +NH+ FK
Sbjct: 299 SIVGVFQNDIKRVIAYSTCSQLGYMVFVCGLSY----------YNVGMFHLVNHAFFKAL 348
Query: 331 LFLSAGSVEYA-TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLI--- 386
LFLSAGSV +A + E ++ +G L + T A L+ SL+++G P GF SK LI
Sbjct: 349 LFLSAGSVIHALSNEQDMRRMGSLVYNLPITYTAMLIGSLSLAGFPFLTGFYSKDLIIEI 408
Query: 387 -----YTAGYNSGDMVLSFGAVLAVFISA-----VTLASFIKFYTSQFGGESERYRDVSE 436
Y+ Y + + + A ++VF +A + +FIK S ++ E
Sbjct: 409 TQISYYSNLYTTYGIFACWLANISVFFTAFYTFRLVFLTFIKNNNSY----KSSMDNIHE 464
Query: 437 VPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSLYLNFDSTAFSPLIFGLLI 496
PL +V+P ++L+ ++IG I++ I + +S + N S P + LL
Sbjct: 465 SPLFIVIPLILLAIASILIG--------FISKDIFVGVGSSFWGN--SIHIMPTAYNLLE 514
Query: 497 VTLAFGTYI 505
V TYI
Sbjct: 515 VEF-MDTYI 522
>sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|3282578|gb|AAC25004.1| (AF029365) NUOM
[Rhodobacter capsulatus] >gi|1586527|prf||2204231H NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 512
Score = 127 bits (316), Expect = 4e-28
Identities = 105/426 (24%), Positives = 190/426 (43%), Gaps = 31/426 (7%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+DG S++F+++ L ++ S ++E + + + A ++ +F+ L +LV F
Sbjct: 81 VDGISILFVMLTTFL-MPLTIASAWHVETRVKEYMIAFLVLEALMIGVFVAL---DLVLF 136
Query: 121 VFFWELMTLSSFILI-TWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMT- 178
F+E + F++I W K+ + L + + +++ Y G+ D +T
Sbjct: 137 YLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLVAMVAMYMMAGTTDIVTL 196
Query: 179 ----YPNLK-------SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
+P+ +L LL+ +F +F K + P H W+P + AP+ S
Sbjct: 197 MSFDFPHADLPFLGWWTLTGGVQTLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSV 256
Query: 228 LLAGAMEKIAVFGLIRIMYTALPT-PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
+LA + K+ +G +R P +++ V +L AV + +L AL + D KKL+AY
Sbjct: 257 VLAAVLLKMGGYGFLRFSLPMFPVGAETMTTFVFILSAVAIVYTSLVALAQEDMKKLIAY 316
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETN 346
S+ MGY+ +GI G+ IF L+H G+LFL G +
Sbjct: 317 SSVAHMGYVTMGI-------FAANQQGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTRE 369
Query: 347 LDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAV 406
+ GGL RM L + ++A G+P +GF+ ++L + V F A V
Sbjct: 370 IAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLLGIFQVNTWVALF-ATSGV 428
Query: 407 FISAVTLASFIKFYTSQFGGE--SERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVP 464
+SA A + Y GE E + +S++ L ++ L++G++P+LV
Sbjct: 429 ILSA---AYALWLYRRVVFGELVKESLKTISDMTTREKAIFAPLVAMTLLLGVYPSLVTD 485
Query: 465 LINEPI 470
LI +
Sbjct: 486 LIGPSV 491
>gb|AAG12221.1| (AF163455) NADH dehydrogenase subunit F [Carex deweyana]
Length = 671
Score = 127 bits (316), Expect = 4e-28
Identities = 111/427 (25%), Positives = 197/427 (45%), Gaps = 53/427 (12%)
Query: 35 LASLSIVALVFNLKPVEGKL---------------LGLPVYIDGFSLIFMLILGILGFSA 79
L + I +L F+++ + G L L ID + I + ++ +G +
Sbjct: 37 LIIIMIFSLNFSIRQINGSLIYQYLWSWTINKDFSLEFGYLIDSLTSIMLTLITTVGITV 96
Query: 80 SLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-W 137
+YS YM + ++ AY N F SMF ++ +SNL+ FWE++ + S++LI W
Sbjct: 97 FIYSDNYMSHD--QAYLRFFAYLNLFNASMFGLVTSSNLIQVYIFWEIVGICSYLLIGFW 154
Query: 138 DEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-----AMTYPNLKSLPSSAT 190
+ K ++ + F L + + Y +GS + +T ++ ++
Sbjct: 155 FTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEFRDLFEITNNLIQKNGLNSL 213
Query: 191 LLLYASFL--IAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTA 248
L+ +FL + +AKS P H W+P + P+ +S+L+ A A L+ ++
Sbjct: 214 LITLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPVSALIHAATMVAAGVFLVARLFPL 272
Query: 249 LPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSP 308
L +I ++++ +G +TL +G AL + D K+ LAY ++ Q+GYI L +GIG S
Sbjct: 273 LSITSNIMHIISSIGLITLFLGATLALAQIDIKRSLAYSTMSQLGYIILALGIGSSR--- 329
Query: 309 LGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT---------GETNLDNLGGLAERMKW 359
+FH + H+ K LFL +GS+ ++ N+ +GGL + +
Sbjct: 330 -------TALFHLITHAYSKALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPI 382
Query: 360 TGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF 419
T A LL +L++ G+PP F SK I + NS FG ++ F + +T +
Sbjct: 383 TRTAFLLGTLSLCGIPPLACFWSKDEILS---NSWLYSPIFG-IITYFTTGLTAFYMFRX 438
Query: 420 YTSQFGG 426
Y F G
Sbjct: 439 YLXTFDG 445
>gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica]
Length = 697
Score = 127 bits (315), Expect = 5e-28
Identities = 119/463 (25%), Positives = 211/463 (44%), Gaps = 63/463 (13%)
Query: 6 LALPLVLFI-LGM-LGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
L LP+++ + LG+ L + K + AF ++ LSI A+VF++ ++ G +Y
Sbjct: 8 LPLPVIMSMGLGLFLIPTATKNLRRIWAFPSVLLLSI-AMVFSVHLSIQQITGSSIYQYL 66
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYN 102
ID + I ++++ +G +YS YM G + +VY +N
Sbjct: 67 WSWTVNNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYISFFN 126
Query: 103 AFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFP 159
SM ++ +SNL+ FFWEL+ + S++LI W + K ++ + F
Sbjct: 127 T---SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFG 182
Query: 160 LFISLGVSYSFLGSLD-------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHF 212
L + + + GSL+ A + + S T+L + +AKS P H
Sbjct: 183 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTILCAFLLFLGAVAKSAQFPLHV 242
Query: 213 WVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
W+P + P+ IS+L+ M +F + R++ + P + + ++L+G +TL +G
Sbjct: 243 WLPDAME-GPTPISALIHATMVAAGIFLIARLLPLFISLPLIMSF-ISLIGTITLFLGAT 300
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +GIG A +FH + H+ K LF
Sbjct: 301 LALAQRDIKRSLAYSTMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLF 350
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T L +L++ G+PP F SK
Sbjct: 351 LGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPPLACFWSK 410
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I + + + F ++A F + +T + Y F G
Sbjct: 411 DEILSNSW----LYSPFFGIIASFTAGLTAFYMFRVYLLTFDG 449
>gb|AAF25169.1|AF182341_1 (AF182341) NADH dehydrogenase [Buergersiochloa bambusoides]
Length = 701
Score = 127 bits (315), Expect = 5e-28
Identities = 105/388 (27%), Positives = 179/388 (46%), Gaps = 42/388 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 197 FRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 255
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
+ A M +F L R+ +P P + + ++L+G +TL +G AL + D K+ LAY
Sbjct: 256 IHAAXMVAAGIFLLARLFPLFIPLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYS 314
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 315 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVG 364
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 365 YSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYS 420
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 421 PFFGIIASFTAGLTAFYMFRIYLLTFDG 448
>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
(U22000) NADH dehydrogenase F [Avena sativa]
Length = 702
Score = 126 bits (314), Expect = 7e-28
Identities = 109/405 (26%), Positives = 185/405 (44%), Gaps = 46/405 (11%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 197 FRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 255
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
+ A M +F L R++ + P + L++L+G +TL +G AL + D K+ LAY
Sbjct: 256 IHAATMVAAGIFLLARLLPLFISLPLIMS-LISLVGTITLFLGATLALAQRDIKRSLAYS 314
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 315 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVG 364
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T A L +L++ G+PP F SK I + + +
Sbjct: 365 YSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPPLACFWSKDEILSNSW----LYS 420
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG----ESERYRDVSEVPL 439
F ++A F + +T + Y F G + Y E PL
Sbjct: 421 PFFGIIASFTAGLTAFYMFRIYLLTFDGYLRVHFQNYSSTKEGPL 465
>gb|AAA64772.1| (U21967) NADH dehydrogenase F [Bambusa stenostachya]
Length = 702
Score = 126 bits (314), Expect = 7e-28
Identities = 103/387 (26%), Positives = 178/387 (45%), Gaps = 41/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 197 FRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 255
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
+ M +F L R++ + P + + ++L+G +TL +G AL + D K+ LAY +
Sbjct: 256 IHATMVAAGIFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYST 314
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GY+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 315 MSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGY 364
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 365 SPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSP 420
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 421 FFGIIASFTAGLTAFYMFRIYLLTFDG 447
>pir||T13056 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - weeping love
grass chloroplast (fragment) >gi|726142|gb|AAA64193.1|
(U21989) NADH dehydrogenase F [Eragrostis curvula]
Length = 701
Score = 126 bits (314), Expect = 7e-28
Identities = 122/464 (26%), Positives = 211/464 (45%), Gaps = 64/464 (13%)
Query: 6 LALPLVLFI-LGM-LGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
L LP+++ + LG+ L + K + AF ++ LSI ALVF++ ++ G +Y
Sbjct: 6 LPLPVIMSMGLGLFLIPTATKNLRRIWAFPSILLLSI-ALVFSIHLSIQQIKGSSIYQYL 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYN 102
ID + I ++++ +G +YS YM G + +VY +N
Sbjct: 65 WSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFN 124
Query: 103 AFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFP 159
SM ++ +SNL+ FFWEL+ + S++LI W + K ++ + F
Sbjct: 125 T---SMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFG 180
Query: 160 LFISLGVSYSFLGSLD-------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHF 212
L + + + GSL+ A + + S T L + +AKS P H
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHV 240
Query: 213 WVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGT 271
W+P + P+ IS+L+ A M +F L R++ + P + + ++L+G +TL +G
Sbjct: 241 WLPDAME-GPTPISALIHAATMVAAGIFLLARLLPLFISLPLIMSF-ISLIGTITLFLGA 298
Query: 272 LYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSL 331
AL + D K+ LAY ++ Q+GY+ L +GIG A +FH + H+ K L
Sbjct: 299 TLALAQRDIKRSLAYSTMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALL 348
Query: 332 FLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
FL +GSV ++ N+ +GGL + + T L +L++ G+PP F S
Sbjct: 349 FLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLKKYVPITRTTFLCGTLSLCGIPPLACFWS 408
Query: 383 KWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
K I + + + F ++A F + +T + Y F G
Sbjct: 409 KDEILSNSW----LYSPFFGIIASFTAGLTAFYMFRIYLLTFDG 448
>pir||T12748 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Cephalostachyum pergracile chloroplast (fragment)
>gi|755829|gb|AAA64773.1| (U21968) NADH dehydrogenase F
[Cephalostachyum pergracile]
Length = 706
Score = 126 bits (314), Expect = 7e-28
Identities = 103/387 (26%), Positives = 178/387 (45%), Gaps = 41/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 85 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 141
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 142 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 200
Query: 176 -------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
A + + S T L + +AKS P H W+P + P+ IS+L
Sbjct: 201 FRDLFKIANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISAL 259
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
+ M +F L R++ + P + + ++L+G +TL +G AL + D K+ LAY +
Sbjct: 260 IHATMVAAGIFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYST 318
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GY+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 319 MSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGY 368
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 369 SPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSP 424
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 425 FFGIIASFTAGLTAFYMFRIYLLTFDG 451
>gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex elynoides]
Length = 688
Score = 126 bits (314), Expect = 7e-28
Identities = 113/425 (26%), Positives = 189/425 (43%), Gaps = 58/425 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 77 IDSLTSIMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 134
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 135 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEF 193
Query: 177 MTYPNLKS-------LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
+ + + S T L + +AKS P H W+P + P+ +S+L+
Sbjct: 194 RDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPVSALI 252
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R+ L TP +I Y+++ +G +TL +G AL + D K+ LAY +
Sbjct: 253 HAATMVAAGVFLVARLFPLLLITP-NIMYIISSIGLITLFLGATLALAQIDIKRSLAYST 311
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------- 341
+ Q+GYI L +GIG S +FH + H+ K LFL +GS+ ++
Sbjct: 312 MSQLGYIILALGIGSSR----------TALFHLITHAYSKALLFLGSGSIIHSMEPVVGY 361
Query: 342 --TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------ 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 362 SPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIFGI 421
Query: 387 -------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEV 437
TA Y +L+F L + FY+ G+ S+R +
Sbjct: 422 ITYFTTGLTAFYMXXVYLLTFXXYLXIHFQGYXXTKTNLFYSIPLWGKSMSKRSNTXXNL 481
Query: 438 PLSMV 442
PLS +
Sbjct: 482 PLSTI 486
>gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri]
Length = 701
Score = 126 bits (314), Expect = 7e-28
Identities = 105/388 (27%), Positives = 179/388 (46%), Gaps = 43/388 (11%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 AMTY--------PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
PN TL + FL A +AKS P H W+P + P+ IS+
Sbjct: 197 FRDLFKIANNWIPNTGINSLLTTLFAFLLFLGA-VAKSAQFPLHVWLPDAME-GPTPISA 254
Query: 228 LLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
L+ M +F + R++ + P + + ++L+G VTL +G AL + D K+ LAY
Sbjct: 255 LIHATMVAAGIFLVARLLPLFISLPLIMSF-ISLVGTVTLFLGATLALAQRDIKRSLAYS 313
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 314 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVG 363
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 364 YSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYS 419
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 420 PFFGIIASFTAGLTAFYMFRIYLLTFDG 447
>gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum var.
sessiliflorum]
Length = 701
Score = 126 bits (314), Expect = 7e-28
Identities = 105/388 (27%), Positives = 180/388 (46%), Gaps = 43/388 (11%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLV 118
ID + I ++++ +G +YS YM G + +VY +N SM ++ +SNL+
Sbjct: 81 IDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLI 137
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD 175
FFWEL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 138 QIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLE 196
Query: 176 AMTY--------PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
PN +TL + FL A +AKS P H W+P + P+ IS+
Sbjct: 197 FRDLFKIANNWIPNNGMNSLLSTLCAFLLFLGA-VAKSAQFPLHVWLPDAME-GPTPISA 254
Query: 228 LLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
L+ M +F L R++ + P + + ++L+G +TL +G AL + D K+ LAY
Sbjct: 255 LIHATMVAAGIFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYS 313
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA------ 341
++ Q+GY+ L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 314 TMSQLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSIIHSMEPLVG 363
Query: 342 ---TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVL 398
N+ +GGL + + T L +L++ G+PP F SK I + + +
Sbjct: 364 YSPDKSQNMVLMGGLRKYVPITKTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYS 419
Query: 399 SFGAVLAVFISAVTLASFIKFYTSQFGG 426
F ++A F + +T + Y F G
Sbjct: 420 PFLGIIASFTAGLTAFYMFRIYLLTFDG 447
>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
Length = 498
Score = 126 bits (314), Expect = 7e-28
Identities = 113/486 (23%), Positives = 219/486 (44%), Gaps = 40/486 (8%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALAS--LSIVALVFNLK------PVEGKL- 54
+ L +P++ IL + G + + AL L++VA + NL P+ +L
Sbjct: 9 LTLVIPVITAILLVFIGKRP----IIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELG 64
Query: 55 -----LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMF 109
+ +D FS + ++ I+ LYS Y +E Y F+L
Sbjct: 65 SWKAPYSIVFVLDIFSALLIITSIIITAIVILYS--YQTIGIERERYYYYFSVLFMLIGI 122
Query: 110 LILITSNLVW--FVFFWELMTLSSFILITWDEK-DFDPGIKYYIAMHILTTFPLFISLGV 166
+ T+ ++ FVFF + S F+L+ K IKY + + ++F + + +
Sbjct: 123 IGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSF-FVMGVAI 181
Query: 167 SYSFLGSLD----AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAP 222
YS +G+L+ + NL + S +++ F+ F K+G+ P W+PS Y P
Sbjct: 182 LYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPP 241
Query: 223 SNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIG-YLVALLGAVTLTVGTLYALRESDAK 281
I + + K+ V+ + R + S Y++ L +T+ G + A+ ++ K
Sbjct: 242 IPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIK 301
Query: 282 KLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA 341
K++ Y+ + +G I +G+ + + GM I++ L+ L K +LFL G +
Sbjct: 302 KIILYNVMIAVGVILVGVAM-------MTESGMIGAIYYTLHDMLVKLALFLLIGIMIKI 354
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
TG +L GGL +R G + +A+L+++G+PP +GF K+ I + + G
Sbjct: 355 TGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERG---FYLS 411
Query: 402 AVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLII-GIFPA 460
V+ + S V L S I+ + F G+ + Y ++V + + I++ + ++ G+
Sbjct: 412 GVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSAD 471
Query: 461 LVVPLI 466
+ P++
Sbjct: 472 YLYPMV 477
>gb|AAF78968.1| (L75862) NADH dehydrogenase F [Encholirium sp. MSBG 1984-0364]
Length = 691
Score = 126 bits (314), Expect = 7e-28
Identities = 112/387 (28%), Positives = 180/387 (45%), Gaps = 40/387 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVW 119
ID + I +++ +G +YS YM G ++ AY +F + L L+TS NL+
Sbjct: 78 IDPLTSIMSILITTVGIMVLIYSDKYMYHDQG--YLRFFAYMSFFNTSMLGLVTSSNLIQ 135
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSL-- 174
FFWEL+ + S++LI W + K ++ + F L + + Y GSL
Sbjct: 136 IYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFYWITGSLEF 194
Query: 175 -DAMTYPN---LKSLPSSATLLLYASFL-IAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
D + N + +S L AS L + +AKS P H W+P + P+ IS+L+
Sbjct: 195 RDLLEITNNLIRNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDAME-GPTPISALI 253
Query: 230 AGA-MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M +F + R++ + P + + ++L+G +TL +G AL + D KK LAY +
Sbjct: 254 HXATMVAAGIFLVARLLPLFIVIPYIMNF-ISLIGVITLLLGATLALAQKDIKKSLAYST 312
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT------ 342
+ Q+GYI L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 313 MSQLGYIMLALGIG----------SYRAALFHLITHAYSKALLFLGSGSIIHSXEPIVGY 362
Query: 343 ---GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLS 399
N+ +GGL + T LL +L++ G+PP F SK I N +
Sbjct: 363 SPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDEI----LNDSWLYSP 418
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGG 426
AV+A F + +T + Y F G
Sbjct: 419 IFAVIAYFAAGLTAFYMFRVYLLTFDG 445
>pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (strain AN387)
Length = 458
Score = 126 bits (313), Expect = 9e-28
Identities = 111/427 (25%), Positives = 184/427 (42%), Gaps = 38/427 (8%)
Query: 63 GFSLIFMLILGILGFSASLYS--IPYMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVW 119
G +L L L + G + S IP + W+ FL + MFL
Sbjct: 37 GLTLALSLQLWLQGGYSLTQSAGIPQWQSEFDMPWILGGVIGVFLAIDMFL--------- 87
Query: 120 FVFFWELMTLSSFILIT-WDEKDFD------PGIKYYI---AMHILTTFPLFISLGVSYS 169
F FFWE+M + + LI W K D K++I A ++ + + V Y+
Sbjct: 88 FFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYN 147
Query: 170 FLGSLDAMTYPNLKSLPSSATL--LLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
G + Y L + P S+ + LL F IAF K +VP H W+P + AP+ S
Sbjct: 148 ATG-VWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSV 206
Query: 228 LLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTVGTLYALRESDAKKLLAY 286
LAG + K A +GL+R P + +A+ LG + + G A ++D K+L+AY
Sbjct: 207 DLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAY 266
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETN 346
S+ MG++ + I G L + M A H L LF+ G + +
Sbjct: 267 TSVSHMGFVLIAIYTGSQLAYQGAVIQMIA-------HGLSAAGLFILCGQLYERIHTRD 319
Query: 347 LDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAV 406
+ +GGL +MKW +L ++A G+P F+ +++I + ++ V
Sbjct: 320 MRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLV 379
Query: 407 FISAVTLASFIKFYTSQFGGESERY--RDVSEVPLSMVVPQLILSSLCLIIGIFPALVVP 464
F S +LA + Y FG + +++ + L V L+L L +++G +P ++
Sbjct: 380 FASVYSLAMLHRAY---FGKAKSQIASQELPGMSLRDVFMILLLVVLLVLLGFYPQPILD 436
Query: 465 LINEPIG 471
+ IG
Sbjct: 437 TSHSAIG 443
>gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideum]
>gi|11254382|pir||T43784 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 [similarity] - slime mold
(Dictyostelium discoideum) mitochondrion
>gi|4958910|dbj|BAA78087.1| (AB000109) NADH
dehydrogenase subunit 5 [Dictyostelium discoideum]
>gi|5442404|gb|AAD43330.1|AF155828_1 (AF155828) NADH
dehydrogenase subunit 5 [Dictyostelium discoideum]
Length = 670
Score = 126 bits (313), Expect = 9e-28
Identities = 108/414 (26%), Positives = 187/414 (45%), Gaps = 32/414 (7%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D + I ++++ + LYS+ YM+ P K ++ + F M L++ N V
Sbjct: 79 DSLTSIMIIVITCISSMVHLYSMDYMKEDPHKTRFFSYL-SLFTFFMMLLVTADNFVQLF 137
Query: 122 FFWELMTLSSFILITWDEKDFDPGIK------------YYIAMHILTTFPLFISLGVSYS 169
F WE + + S++LI + + + IL F +F S+ S
Sbjct: 138 FGWEGVGIMSYLLINFWYTRLQANKSALKAVILNRFGDFGLFFGILLVFLVFKSVDFSVI 197
Query: 170 FLGSLDAMTYP-NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
F + Y NL +A L+ + +I + KS + H W+P + P+ +S+L
Sbjct: 198 FTIAPFITEYTINLLGYEVNAITLIGSFIVIGVVGKSAQLGLHMWLPDAME-GPTPVSAL 256
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
L A M VF ++R L +I ++ ++GA+T T + ++D K+++AY
Sbjct: 257 LHAATMVTAGVFLVLRTS-PLLSYSITILNILTIIGALTTLFATTIGIVQNDIKRVIAYS 315
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETN 346
+ Q+GY+ G+ L A I+H H+ FK LFLSAGSV + E +
Sbjct: 316 TCSQLGYMIFACGL----------LNYNASIYHLTTHAFFKALLFLSAGSVIHGLNDEQD 365
Query: 347 LDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLA- 405
+ +GGL M T L+ +LA++G P +G+ SK +I Y + +F A++
Sbjct: 366 MRKMGGLVNLMPLTYQCMLIGTLALTGFPFLSGYYSKDIILETSYATYYWEGTFAAIIGY 425
Query: 406 VFISAVTLASFIKFYTSQFGGESERYRDVS---EVPLSMVVPQLILSSLCLIIG 456
V T SF + F +Y+ ++ E +MV+P +IL+ + IG
Sbjct: 426 VAAFGTTFYSFRLLILTFFNKPRMQYKTIAGVHEASTNMVIPLVILALCSIFIG 479
>gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex parva]
Length = 662
Score = 126 bits (313), Expect = 9e-28
Identities = 122/479 (25%), Positives = 210/479 (43%), Gaps = 74/479 (15%)
Query: 22 SKKAFKVSSAFAALASLSIVALVFNLKPVEGKL---------------LGLPVYIDGFSL 66
S++ + S F + ++ I +L F+++ + G L L ID +
Sbjct: 21 SRRIWAFPSIFXLIITM-IFSLNFSIQQINGSLIYQYLWSWTINKDFSLEFGYLIDSLTS 79
Query: 67 IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVWFVFFWE 125
I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+ FWE
Sbjct: 80 IMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQIYIFWE 137
Query: 126 LMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNL 182
++ + S++LI W + K ++ + F L + + Y +GS + +
Sbjct: 138 IVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEFRDLFEI 196
Query: 183 KS-------LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAME 234
+ + S T L + +AKS P H W+P + P+ IS+L+ A M
Sbjct: 197 TNNLIQKNGINSLFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISALIHAATMV 255
Query: 235 KIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGY 294
VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY ++ Q+GY
Sbjct: 256 AAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQKDIKRSLAYSTMSQLGY 314
Query: 295 IWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGET 345
I L +GIG S +FH + H+ K LFL +GS+ ++
Sbjct: 315 IILALGIGSSR----------TALFHLITHAYSKALLFLGSGSIIHSMEPVVGYSPCKNQ 364
Query: 346 NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------------ 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 365 NMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIFGTITYFTT 424
Query: 387 -YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEVPLSMV 442
TA Y +L+F L + + FY+ G+ S+R +PLS +
Sbjct: 425 GLTAFYMFXVYLLTFDGYLRIHFQGYSSTKINLFYSISLWGKTMSKRSNADRNLPLSTI 483
>sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >gi|282215|pir||S28891
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechocystis sp. (strain PCC 6803)
>gi|47602|emb|CAA46289.1| (X65170) NADH dehydrogenase
subunit D [Synechocystis PCC6803]
>gi|1001415|dbj|BAA10037.1| (D63999) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 525
Score = 125 bits (312), Expect = 1e-27
Identities = 111/439 (25%), Positives = 202/439 (45%), Gaps = 47/439 (10%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
DG S+ +++ G + A++ + P + ++ + Y + +++ F
Sbjct: 83 DGLSMPLIILTGFITTLATMAAWPVTLKPKLFYFLMLLMYGG----QIAVFAVQDILLFF 138
Query: 122 FFWELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTF--PLFISL-GVSYSFLGSLDA- 176
WEL + +++++ W K Y IL T LFI L G++ +F G ++
Sbjct: 139 LVWELELVPVYLILSIWGGKKR----LYAATKFILYTAGGSLFILLAGLTLAFYGDVNTF 194
Query: 177 -MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEK 235
M+ K +P + LLLYA FLIA+ K I P H W+P + A + LLAG + K
Sbjct: 195 DMSAIAAKDIPVNLQLLLYAGFLIAYGVKLPIFPLHTWLPDAHGEATAPAHMLLAGILLK 254
Query: 236 IAVFGLIRIMYTALPTPKSI-GYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGY 294
+ + L+R+ LP ++ ++ +LG V + + + + K+ +AY SI MG+
Sbjct: 255 MGGYALLRMNVGMLPDAHAVFAPVLVILGVVNIIYAAFTSFAQRNLKRKIAYSSISHMGF 314
Query: 295 IWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLA 354
+ +G+ + LGM + ++H L SLF G+ T LD +GG+
Sbjct: 315 VLIGL-------ASFTDLGMSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLDEMGGIG 367
Query: 355 ERMK-----WTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAV------ 403
++MK WT A LASLA+ G+ +GF+++ +++ S L F +
Sbjct: 368 QKMKKGFAMWT--ACSLASLALPGM---SGFVAELMVFVGFATSDAYNLVFRTIVVVLMG 422
Query: 404 LAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI-----IGIF 458
+ V ++ + L S ++ +G E+E V+ L V P+ + CL+ IG +
Sbjct: 423 VGVILTPIYLLSMLR--EMLYGPENEEL--VNHTNLVDVEPREVFIIGCLLVPIIGIGFY 478
Query: 459 PALVVPLINEPIGAPISTS 477
P L+ + + I + T+
Sbjct: 479 PKLITQIYDPTINQLVQTA 497
>gb|AAF37199.1| (AF191810) NADH dehydrogenase subunit F [Carex echinochloe]
Length = 695
Score = 125 bits (312), Expect = 1e-27
Identities = 112/409 (27%), Positives = 185/409 (44%), Gaps = 56/409 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 77 IDSLTSIMLTLITTVGITVLIYSDNYMSYD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 134
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD- 175
FWE++ + S++LI W + K ++ + + F L + + Y +GS +
Sbjct: 135 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVT-NXVGDFGLLLGILAFYWIIGSFEF 193
Query: 176 ----AMTYPNLKSLPSSATLLLYASFL--IAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
+T +K ++ +FL + +AKS P H W+P + P+ IS+L+
Sbjct: 194 RDLFEITNSLIKKNGVNSVFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISALI 252
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY +
Sbjct: 253 HAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQIDIKRSLAYST 311
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV----EYATGE 344
+ Q+GYI L +GIG S A +FH + H+ K LFL +GS+ E G
Sbjct: 312 MSQLGYIILALGIGSSR----------AALFHLITHAYSKALLFLGSGSIIHSMEPVVGY 361
Query: 345 TNLDN-----LGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------ 386
+ N +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 362 SPYKNQXMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIFGI 421
Query: 387 -------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGES 428
TA Y + F L + FY+ G+S
Sbjct: 422 ITYFTTGLTAXYMXXGXXIXFXGXLXIXFXGXXSTKTNLFYSISLWGKS 470
>pir||F82822 NADH-ubiquinone oxidoreductase, NQO12 subunit XF0316 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105139|gb|AAF83127.1|AE003884_12 (AE003884)
NADH-ubiquinone oxidoreductase, NQO12 subunit [Xylella
fastidiosa]
Length = 713
Score = 125 bits (312), Expect = 1e-27
Identities = 115/412 (27%), Positives = 194/412 (46%), Gaps = 52/412 (12%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
ID + + M+++ + LY+I YME PG + ++ + F SM +++++N +
Sbjct: 87 IDRLTAVMMVVVTFVSLLVHLYTIGYMEEDPGYQRFFSY-ISLFTFSMLTLVMSNNFLQL 145
Query: 121 VFFWELMTLSSFILI-TWDEKD--FDPGIKYYIAMHILT-TFPLFISLGVSYSFLGSLD- 175
F WE + L S++LI W ++ +K ++ + F L ISL V Y+F G+LD
Sbjct: 146 FFGWEAVGLVSYLLIGFWFKRPSAIFANMKAFLVNRVGDFGFLLGISL-VLYTF-GTLDY 203
Query: 176 AMTYPNLKSLP--------------------------SSATLLLYASFLIAFMAKSGIVP 209
++ + N+ SL S+ATL+ F I M KS VP
Sbjct: 204 SVVFANVGSLVGQTTNVWSGNVDVFGSIIHIMGPVSWSTATLVCICLF-IGAMGKSAQVP 262
Query: 210 FHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV 269
H W+P + + P+ IS+L+ A A ++ M + V +GA T
Sbjct: 263 LHVWLPDSME-GPTPISALIHAATMVTAGIFMVARMSPLFQLSEVALQFVLFVGATTAFF 321
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
L + ++D K+++AY ++ Q+GY+ + +G+ A +FH + H+ FK
Sbjct: 322 TGLIGIVQNDIKRVVAYSTLSQLGYMTVALGVS----------AYSAAVFHLMTHAFFKA 371
Query: 330 SLFLSAGSVEYAT-GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYT 388
LFL+AGSV E ++ +GGL + M T + +++ +LA+ G P F+GF SK I
Sbjct: 372 LLFLAAGSVIIGMHHEQDMRKMGGLRKYMPITYITSVIGTLALVGTPFFSGFYSKDTIIE 431
Query: 389 AGYNSGDMVLSFGAVLAVF--ISAVTLASFIKF--YTSQFGGESERYRDVSE 436
A + S+ A + + V + SF F F GE ER+R V +
Sbjct: 432 AAAYHAEHAHSWVATYGYWAVLGGVLVTSFYSFRLLFLTFHGE-ERFRRVGD 482
>gb|AAK41284.1| Formate hydrogenlyase subunit 3 (hycC) [Sulfolobus solfataricus]
Length = 621
Score = 125 bits (311), Expect = 1e-27
Identities = 133/497 (26%), Positives = 234/497 (46%), Gaps = 70/497 (14%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
+G F +I + AS++SI Y H GK W+ + Y +L M ++L + + F+
Sbjct: 85 NGVLSFFSIISTSVWILASIFSIEY--DHYGK-WLSPL-YILTILGMTIVLNSDGYLLFL 140
Query: 122 FFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPN 181
WE+MT+ +++ I K+ P F F L G + A T N
Sbjct: 141 AGWEIMTIPAYVAIGLTAKNNRPPF----------VFMAFGELSTVLILAGFIIANT-TN 189
Query: 182 LKSLPSSATLLLYASFLIAFMAKSGIVPFHF--WVPSTYKVAPSNISSLLAGAMEKIAVF 239
LPS L++ A+F F+ K G++PF W+P + APSN S++L+ M + V+
Sbjct: 190 FNYLPSPVPLIV-ATF--GFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATMTLMGVY 246
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
G+++I P + +GA ++ G LY + K +LA+ +I G I + +
Sbjct: 247 GILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNGAILVAL 306
Query: 300 GI-----GLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAG-----SVEYATGETNLDN 349
+ L++ S + + + I ++ HS+ K LFLS+G S+ Y+ N++
Sbjct: 307 SLYMISKQLNITS-IEHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKIRNIE- 364
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWL----IYTAGYNSGDMV----LSFG 401
GL TLLAS ++SG+ P G ++ WL ++ Y +M+ + G
Sbjct: 365 ----------IGL-TLLAS-SMSGLLPNIGGVASWLLLENLFMFSYVLHNMISILFIMTG 412
Query: 402 AVLAVFISAVTLASFIKF--YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGI-F 458
A++A+ T A I++ YTS F E+ + + P+ L+ + + LI+G
Sbjct: 413 AIIAMGEGLAT-ALLIRYITYTSIFQNTREQLSKIKKYPI------LLSALIVLILGFTL 465
Query: 459 PALVVPLINEP--IGAPISTSLYLNFDSTAF---SPLIFGLLIVTLAFGTYIGL-EPRGE 512
P L+ P N +G ++ + + +T F SPL LL+V + +Y+ +P+
Sbjct: 466 PYLIYPYKNSTTILGMLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIR 525
Query: 513 EAEPWDCGASFIERDEY 529
+AE W+ G + E++EY
Sbjct: 526 KAETWNNGVN--EKEEY 540
>pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - smut grass
chloroplast (fragment) >gi|755855|gb|AAA64701.1|
(U21983) NADH dehydrogenase F [Sporobolus indicus]
Length = 703
Score = 125 bits (311), Expect = 1e-27
Identities = 115/439 (26%), Positives = 198/439 (44%), Gaps = 67/439 (15%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI ALVF++ ++ G +Y ID + I +++
Sbjct: 33 AFPSVLFLSI-ALVFSVHLSIQQIKGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPLAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVF 239
+ S T L + +AKS P H W+P + P+ IS+L+ M +F
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHATMVAAGIF 266
Query: 240 GLIRIMYTALPTPKSIGYL---VALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIW 296
+ R+ LP +S+ ++ ++L+G +TL +G AL + D K+ LAY ++ Q+GY+
Sbjct: 267 LIARL----LPLFRSLPFIMSFISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMM 322
Query: 297 LGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNL 347
L +GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 323 LALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNM 372
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVF 407
+GGL + + T L +L++ G+PP F SK I + + + F ++A F
Sbjct: 373 VLMGGLKKYVPITKTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASF 428
Query: 408 ISAVTLASFIKFYTSQFGG 426
+ +T + Y F G
Sbjct: 429 TAGLTAFYMFRIYLLTFDG 447
>pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Pseudomonas syringae (fragment)
>gi|2920663|gb|AAC04581.1| (AF048756) NADH dehydrogenase
I chain M [Pseudomonas syringae]
Length = 444
Score = 125 bits (311), Expect = 1e-27
Identities = 106/412 (25%), Positives = 183/412 (43%), Gaps = 27/412 (6%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+DG SL+ +L+ G+LG + L S ++R G + + ++ +FL + +L F
Sbjct: 18 LDGLSLLMILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWILGGVVGVFLAI---DLFMF 74
Query: 121 VFFWELMTLSSFILIT-WDEKDFD-------PGIKYYIAMHILTTFPLFISLGVSYSFLG 172
FFWE+M + + LI W D K++I L LG+
Sbjct: 75 FFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAILGLVLVHFN 134
Query: 173 SLDAMTYPN---LKS-LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
+T+ LK+ L +L F IAF K +VP H W+P + AP+ S
Sbjct: 135 QTGVITFAYADLLKTKLAPGTEYILMLGFFIAFAVKLPVVPLHSWLPDAHAQAPTAGSVD 194
Query: 229 LAGAMEKIAVFGLIRIMYTALPTPKSIGYLVAL-LGAVTLTVGTLYALRESDAKKLLAYH 287
LAG + K A +GL+R P + +A+ LG V + G A ++D K+L+A+
Sbjct: 195 LAGILLKTAAYGLLRFALPLFPNASAEFAPIAMTLGLVGIFYGAFLAFAQTDIKRLIAFS 254
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNL 347
S+ MG++ +GI G S + G L + H L +LF+ +G + ++
Sbjct: 255 SVSHMGFVLIGIYSG-SQQALQGVL------IQMIAHGLSAAALFILSGQLYERLHTRDM 307
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVF 407
+GGL R+ + +L + A G+P F+ ++LI + S + + VF
Sbjct: 308 REMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILLGSFASSPWITAIATSGLVF 367
Query: 408 ISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
S +L + Y G S+ + + ++ L L+ L +++G+FP
Sbjct: 368 GSVYSLIMIHRAYF----GPSKSDEVLKGMDGREMIMVLGLAVLLVVLGVFP 415
>gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia phleoides]
Length = 702
Score = 125 bits (311), Expect = 1e-27
Identities = 113/427 (26%), Positives = 190/427 (44%), Gaps = 59/427 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
ID + I + ++ +G + +YS YM G +A N F SM ++ +SNL+
Sbjct: 79 IDSLTSIMLTLITTVGITVLIYSDNYMSHDQGYLRFFAYL-NLFNASMLGLVTSSNLIQI 137
Query: 121 VFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-- 175
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 138 YIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GXFGLLLGILGFYWIIGSFEFR 196
Query: 176 --------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
+ + SL ++ L + +AKS P H W+P + P+ IS+
Sbjct: 197 DLFEITNNLIQKNGVNSLFTTLCTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISA 255
Query: 228 LL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAY 286
L+ A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY
Sbjct: 256 LIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQIDIKRSLAY 314
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA----- 341
++ Q+GYI L +GIG S +FH + H+ K LFL +GS+ ++
Sbjct: 315 STMSQLGYIILALGIGSSR----------TALFHLITHAYSKALLFLGSGSIIHSMEPVV 364
Query: 342 ----TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI---- 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 365 GYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIF 424
Query: 387 ---------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSE- 436
TA Y +L+F L + + FY+ G+S R ++
Sbjct: 425 GIITYFTTGLTAFYMFRVYLLTFDGYLRIHFQGYSSTKTNLFYSISLWGKSMSKRSNTDR 484
Query: 437 -VPLSMV 442
+PLS +
Sbjct: 485 NLPLSTI 491
>gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrastis canadensis]
Length = 410
Score = 125 bits (311), Expect = 1e-27
Identities = 112/395 (28%), Positives = 186/395 (46%), Gaps = 60/395 (15%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSIV L F+ ++ G P+Y ID + I ++
Sbjct: 12 AFPSVLLLSIVML-FSADLSIQQINGSPIYQYVWSWTINNDFSLDFGYLIDPLTSIMSIL 70
Query: 72 LGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLS 130
+ +G +YS YM G ++ AY +F + L L+TS NL+ FWEL+ +
Sbjct: 71 ITTVGIMVLIYSDNYMSHDQG--YLQFFAYMSFFNASMLGLVTSSNLIQIYIFWELVGMC 128
Query: 131 SFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNL----- 182
S++LI W + K ++ + F LF+ + Y GS + +
Sbjct: 129 SYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLFLGILGLYWITGSFEFRDLFEIVNDLI 187
Query: 183 -KSLPSSATLLLYASFL-IAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVF 239
+ +S L L AS L + +AKS P H W+P + P+ IS+L+ A M +F
Sbjct: 188 DNNGANSLFLTLCASLLFVGAIAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIF 246
Query: 240 GLIRIM--YTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
+ R++ +T +P I Y+++L+G +T+ +G AL + D K+ LAY ++ Q+GYI L
Sbjct: 247 LVARLLPLFTTIPY---IMYIISLVGIITILLGATLALAQRDIKRSLAYSTMSQLGYIML 303
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLD 348
+G+G A +FH + H+ K LFL +GS+ ++ N+
Sbjct: 304 ALGMG----------SYRAALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPDKSQNMA 353
Query: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
+GGL + + T A LL +L++ G+PP F SK
Sbjct: 354 LMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSK 388
>gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46620|NU5C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|1363571|pir||S58612 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - maize chloroplast
>gi|902281|emb|CAA60346.1| (X86563) NADH dehydrogenase
ND5 [Zea mays]
Length = 738
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 41 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 99
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 100 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 156
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 157 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 215
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 216 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 274
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 275 FLLARLLPLFISLPWIMSF-ISLIGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 333
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 334 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 383
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 384 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 439
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 440 GLTAFYMFRIYLLTFDG 456
>gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii]
Length = 698
Score = 125 bits (310), Expect = 2e-27
Identities = 117/438 (26%), Positives = 202/438 (45%), Gaps = 64/438 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 29 AFPSILLLSI-AMVFSLYLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 87
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 88 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 144
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKS-- 184
S++LI W + K ++ + F L + + + GSL+ + +
Sbjct: 145 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 203
Query: 185 LPSSA------TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIA 237
+P++ TL + FL A +AKS P H W+P + P+ IS+L+ A M
Sbjct: 204 IPNNGINSLFTTLCAFLLFLGA-VAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAG 261
Query: 238 VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
+F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 262 IFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMML 320
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLD 348
IGIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 321 AIGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMV 370
Query: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFI 408
+GGL + + T L +L++ G+PP F SK I + + + F ++A F
Sbjct: 371 LMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFT 426
Query: 409 SAVTLASFIKFYTSQFGG 426
+ +T + Y F G
Sbjct: 427 AGLTAFYMFRIYLLTFDG 444
>gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus]
Length = 702
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus]
Length = 702
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gb|AAD26243.1| (AF117426) NADH dehydrogenase [Sorghum leiocladum]
Length = 696
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 25 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 83
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 84 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 140
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 141 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 199
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 200 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 258
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 259 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 317
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 318 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 367
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 368 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 423
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 424 GLTAFYMFRIYLLTFDG 440
>gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense]
Length = 702
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gb|AAD26249.1| (AF117432) NADH dehydrogenase [Sorghum versicolor]
Length = 698
Score = 125 bits (310), Expect = 2e-27
Identities = 113/436 (25%), Positives = 196/436 (44%), Gaps = 60/436 (13%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 27 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 85
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 86 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 142
Query: 130 SSFILIT-WDEKDFDP-GIKYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTYP 180
S++LI W + G + + + F L + + + GSL+ A +
Sbjct: 143 CSYLLIGFWFTRPIAASGCQKAFVTNRVGDFGLLLGILGFFWITGSLEFRDLFKIANNWI 202
Query: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVF 239
+ S T L + +AKS P H W+P + P+ IS+L+ A M +F
Sbjct: 203 PNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIF 261
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
L R++ + P + + ++L+G +TL +G AL + D K+ L Y ++ Q+GY+ L +
Sbjct: 262 LLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLXYSTMSQLGYMMLAL 320
Query: 300 GIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNL 350
GIG A +FH + H+ K LFL +GSV ++ N+ +
Sbjct: 321 GIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLM 370
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 371 GGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTAG 426
Query: 411 VTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 427 LTAFYMFRIYLLTFDG 442
>gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex humboldtiana]
Length = 702
Score = 125 bits (310), Expect = 2e-27
Identities = 113/429 (26%), Positives = 194/429 (44%), Gaps = 57/429 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 82 IDSLTSIMLTLITTVGITVLIYSDNYMSYD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 139
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD- 175
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 140 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILAFYWIIGSFEF 198
Query: 176 ----AMTYPNLKSLPSSATLLLYASFL--IAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
+T +K ++ +FL + +AKS P H W+P + P+ IS+L+
Sbjct: 199 RDLFEITNSLIKKNGVNSVFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISALI 257
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY +
Sbjct: 258 HAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQIDIKRSLAYST 316
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT------ 342
+ Q+GYI L +GIG S A +FH + H+ K LFL +GS+ ++
Sbjct: 317 MSQLGYIILALGIGSSR----------AALFHLITHAYSKALLFLGSGSIIHSMEPVVGY 366
Query: 343 ---GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------ 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 367 SPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNXWLYSPIFGI 426
Query: 387 -------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPL 439
TA Y F L + FY+ G+S R ++ L
Sbjct: 427 ITYFTTGLTAFYMFXXXXXXFXGYLXIHFQGYXSTKTNLFYSISLWGKSMSKRSNTDRNL 486
Query: 440 SM-VVPQLI 447
++ ++P+ +
Sbjct: 487 ALSIIPKKV 495
>sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|755851|gb|AAA64699.1| (U21981) NADH dehydrogenase F
[Sorghum bicolor] >gi|4588864|gb|AAD26241.1| (AF117424)
NADH dehydrogenase [Sorghum halepense]
Length = 702
Score = 125 bits (310), Expect = 2e-27
Identities = 114/437 (26%), Positives = 197/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259589|gb|AAF43890.1|AF166114_102 (AF166114)
subunit 5 of NADH-plastoquinoneoxidoreductase
[Mesostigma viride]
Length = 652
Score = 125 bits (310), Expect = 2e-27
Identities = 112/429 (26%), Positives = 191/429 (44%), Gaps = 40/429 (9%)
Query: 54 LLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLIL 112
LL + ++D + + ++I+ + +Y+ YM G +V AY + F SM ++
Sbjct: 82 LLEIGYFVDPLTAVMLVIVTTVAILVLIYTDGYMSYDEG--YVRFFAYLSLFTTSMLGLV 139
Query: 113 ITSNLVWFVFFWELMTLSSFILIT-WDEKDF--DPGIKYYIAMHILTTFPLFISLGVSYS 169
++ NL+ FWEL+ + S++LI W + D K ++ + F L + + Y
Sbjct: 140 LSPNLLQIYVFWELVGMCSYLLIGFWFTRPAAADACQKAFVTNRV-GDFGLLLGILGFYW 198
Query: 170 FLGSLD----AMTYPNLKSLPSSAT-LLLYASFLIAF--MAKSGIVPFHFWVPSTYKVAP 222
GS + +M L + T L ++ FLI +AKS P H W+P + P
Sbjct: 199 MTGSFEFDVISMKLLQLAEYDNFNTQLAIFFGFLIFLGPVAKSAQFPLHVWLPDAME-GP 257
Query: 223 SNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKK 282
+ IS+L+ A A L+ M+ + L+A GA+T +G A+ + D KK
Sbjct: 258 TPISALIHAATMVAAGVFLVARMFPIFSQFPFLMDLIAWTGAITAIIGATIAVTQVDLKK 317
Query: 283 LLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA- 341
LAY ++ Q+GY+ + +G+G A +FH + H+ K LFLSAGS +
Sbjct: 318 GLAYSTMSQLGYMIMAMGMG----------SYTASLFHLMTHAYSKALLFLSAGSTIHGM 367
Query: 342 --------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNS 393
N+ +GG+ + M TG A L+ +L++ G+PP F SK I + +
Sbjct: 368 EPIVGFNPAKNQNMSLMGGIRKYMPITGNAFLIGTLSLCGIPPLACFWSKDAILSNAFVH 427
Query: 394 GDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDV------SEVPLSMVVPQLI 447
++ G A S + + +F G S + E M +P +I
Sbjct: 428 SPLLWFIGWSTAGLTSFYMFRMYFLVFEGEFRGNSVNQEKIRSNKLPKESNTKMTLPLII 487
Query: 448 LSSLCLIIG 456
L+ + IG
Sbjct: 488 LTLFSITIG 496
>emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related protein
[Thermoplasma acidophilum]
Length = 469
Score = 125 bits (310), Expect = 2e-27
Identities = 105/472 (22%), Positives = 224/472 (47%), Gaps = 28/472 (5%)
Query: 5 ELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGF 64
E+ L ++ F++ +G +K+ + +A A+L++ ++ P + ++ F
Sbjct: 10 EIFLAIMGFVVLAVGIPVRKS--IVNAAITFATLAVAIIMIAFTPYSS---AYGITVNKF 64
Query: 65 SLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFW 124
S F ++L I SA S+P + + ++ A L M + T NL+ +
Sbjct: 65 SEYFAIVLLI---SALFISLPVAKYLGKRSEIFYSALIFSALGMIFVAETWNLIIAFVAF 121
Query: 125 ELMTLSSFILITWD--EKDFDPGIKYYIAMHILTTFPLFISLGVSYSF--LGSLDAMTYP 180
E +++ ++I+ + +++ + +KY+ I TTF I LG+++ F +G+ T
Sbjct: 122 ESVSIMTYIMSAYGGKQRNLEATVKYFFTGTIATTF---IILGIAFYFFSVGTFTLSTST 178
Query: 181 NLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG 240
+ S LL LI F K I P H W Y +++S+ L+ + +A
Sbjct: 179 TMVSADKPTMLLALLFLLIGFGFKLAIFPMHQWAIDAYDGTENDVSAFLSTGTKIMAFVI 238
Query: 241 LIRIMYTALPTPKS-IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
+++I + + + + +L +T+T + AL +++ K+LLAY S+ Q GY+ L +
Sbjct: 239 VLKIFLVGFSSYTAPVYFFFVILSVLTMTYANVAALSQNNVKRLLAYSSVAQAGYLILVL 298
Query: 300 G----IGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAE 355
+G+ + L + +G+F++L + KG FL+ V+ D + GL +
Sbjct: 299 AVVSYVGIGNKPSVVDLAIASGMFYSLVYIFMKGGSFLAMNMVKQE--NVTFDAISGLGK 356
Query: 356 RMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLAS 415
+ + + + L+++G+P GFL+K+ ++ + + G L + AV+A+ SA+++
Sbjct: 357 KSPYVAASFSILLLSLAGIPLTGGFLAKYFLFLSVIDGG---LWWLAVIAILNSAISVFY 413
Query: 416 FIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLIN 467
++K F + + +MV+ I +++ + +G+F + L+N
Sbjct: 414 YMKVMRYLFWEDPKSEFSTDNGNKAMVI---ISAAIVVFLGVFYVMFPMLVN 462
>pir||T13568 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Phaenosperma
globosa chloroplast (fragment) >gi|726176|gb|AAA64210.1|
(U22006) NADH dehydrogenase F [Phaenosperma globosa]
Length = 701
Score = 124 bits (309), Expect = 3e-27
Identities = 114/437 (26%), Positives = 198/437 (45%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+++ ++ G +Y ID + I +++
Sbjct: 32 AFPSVLLLSI-AMVFSIQLSIQQIKGSSIYQYLWSWTVNNDFSLEFGYLIDPLTSIMLIL 90
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 91 ITTVGILVLIYSDGYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 147
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 148 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 206
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 207 IPNNGINSVLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 265
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 266 FLLARLLPLFISLPLIMNF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 324
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 325 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 374
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 375 MGGLRKYIPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 430
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 431 GLTAFYMFRIYLLTFDG 447
>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 488
Score = 124 bits (309), Expect = 3e-27
Identities = 117/468 (25%), Positives = 202/468 (43%), Gaps = 30/468 (6%)
Query: 10 LVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFM 69
L LFI G L F+ L SL ++ ++ G P+ + +
Sbjct: 34 LELFIKGKERRLVLNVVSYVGYFSVLMSL-LIPWMYKGDTFYGNFTNDPLAVTVKIFAVL 92
Query: 70 LILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ L IL F++S +S ++ E+ Y +A+ LL +F++ T NL+ EL+++
Sbjct: 93 ITLAILPFASSYFSA---KKSFYGEFYYILAFT--LLGVFVLASTYNLIILYVALELVSV 147
Query: 130 SSFIL--ITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPS 187
+IL + + G Y+ + L+ Y + GSLD +
Sbjct: 148 GFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGAAFMYIYSGSLDLREILTYQGKDI 207
Query: 188 SATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYT 247
+L FLI K G VPFH+WVP Y+ AP+ +++L+A + L+R+M
Sbjct: 208 HYLVLGLVFFLIGLAVKIGAVPFHYWVPDAYQGAPTPVTALMASVGKLAFFIPLVRVMPL 267
Query: 248 ALPTPKSIGYL-VALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLD 306
+ + V ++ A+T+ G L AL + D K+LLAY SI GYI G +
Sbjct: 268 VQEKFSLVWTITVGVIAALTMLYGNLVALVQKDVKRLLAYSSIAHSGYIMAGAAVA---- 323
Query: 307 SPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETN-LDNLGGLAERMKWTGLATL 365
+GM A I+ + +++ FL +E N ++N GL + A
Sbjct: 324 ---KVIGMKAVIYFLVAYAVMSAGAFLVLALMEKNPEWQNYMENFYGLRFNAPYIAFAFF 380
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG-----AVLAVFISAVTLASFIKFY 420
+ +A+ GVPP GF+ K L++ M LSF A + + +A++ +I+
Sbjct: 381 VYMVALLGVPPTVGFVGKALVF--------MALSFDKLWWLAFIMILSAAISTGYYIRLV 432
Query: 421 TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINE 468
+ E E+ + L L+ +++G+ P+LV LI +
Sbjct: 433 VVMYMHEREKEIRSAPSHLGEKFSLFALTLASVLLGVLPSLVWFLIKQ 480
>gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans]
Length = 702
Score = 124 bits (309), Expect = 3e-27
Identities = 114/437 (26%), Positives = 202/437 (46%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKS-- 184
S++LI W + K ++ + F L + + + GSL+ + +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFXITGSLEFRDLFKIANNW 207
Query: 185 LPSSA--TLLLYASFLIAFM---AKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+P++ +LL + + F+ AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTSCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 491
Score = 124 bits (308), Expect = 3e-27
Identities = 113/426 (26%), Positives = 193/426 (44%), Gaps = 29/426 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+G V +DG ++ +L+ IL +A ++S +R P + +A + +F L
Sbjct: 71 IGYHVGVDGMAISLILMTSILFLAAYIWSWKIEDR-PSLYFALFLALETACIGVFAAL-- 127
Query: 115 SNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIA-MHILTTF--PLFISLGVS---- 167
+L F FWE M + + +I + D K Y A L TF LF+ LG++
Sbjct: 128 -DLFLFYLFWEGMLIPMYFIIGFWGHDR----KVYAANKFFLYTFFGSLFLLLGIASILV 182
Query: 168 --YSFLGSLDAMTYPNLK-SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSN 224
Y G + + +L P L+ + F I F K + PFH W+P + AP+
Sbjct: 183 YGYFETGKISFDYFFHLGLDYPLWLELIAFLLFGIGFAVKIPMWPFHTWLPDAHVEAPTA 242
Query: 225 ISSLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYLVALLGAVTLTVGTLYALRESDAKKL 283
S +LAG + K+ +G +R P K L+ L V + + A+ ++ K+L
Sbjct: 243 GSVILAGVLLKMGTYGFVRFSLPFFPEASKYYIPLIFTLSVVAVIYAAMMAIAQTHMKRL 302
Query: 284 LAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG 343
+AY SI MG + LG ++ D+ GA I+ + H L +LFL AG +
Sbjct: 303 IAYSSISHMGLVTLGT-FAMNSDALNGA------IYLMIAHGLSSAALFLGAGFIYDRIH 355
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAV 403
++D+LGGLA + + A LA LA P F F+S++LI + + +
Sbjct: 356 SYHMDDLGGLARYIPYFTFAFFLAVLAGIAFPGFASFVSEFLILLGIFEKFPVWAFVAGI 415
Query: 404 LAVFISAVTLASFIKFYTSQFGGESER---YRDVSEVPLSMVVPQLILSSLCLIIGIFPA 460
V +A +L F K + ER ++ + ++ L +P ++ + L++GI+P
Sbjct: 416 GMVLGAAYSLYMFRKVMLEEESIPEERVEKWKKLKDLELHHAIPFALIIGMALVMGIYPY 475
Query: 461 LVVPLI 466
V ++
Sbjct: 476 PFVKIV 481
>gb|AAD26244.1| (AF117427) NADH dehydrogenase [Sorghum macrospermum]
Length = 702
Score = 124 bits (308), Expect = 3e-27
Identities = 116/436 (26%), Positives = 193/436 (43%), Gaps = 60/436 (13%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSY--SFLGSLDAMTYPNL-- 182
S++LI W + K ++ + L LG + L D PN
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLXILGFFWITGILEFRDLFKIPNNWI 208
Query: 183 --KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVF 239
+ S T L + +AKS P H W+P + P+ IS+L+ A M VF
Sbjct: 209 PNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGVF 267
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +
Sbjct: 268 LLARLLPLFMSLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLAL 326
Query: 300 GIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNL 350
GIG A +FH + H+ K LFL +GSV ++ N+ +
Sbjct: 327 GIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLM 376
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + + T L +L++ G+PP F SK I + + F ++A F +
Sbjct: 377 GGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEIXSNSW----FYSPFFGIIASFTAG 432
Query: 411 VTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 433 LTAFYMFRIYLLTFDG 448
>gi|7525082 NADH dehydrogenase ND5 [Arabidopsis thaliana]
>gi|6685678|sp|P56752|NU5C_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|5881743|dbj|BAA84434.1| (AP000423) NADH
dehydrogenase ND5 [Arabidopsis thaliana]
Length = 746
Score = 124 bits (308), Expect = 3e-27
Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 44/395 (11%)
Query: 60 YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLV 118
+ID + I +++ +G +YS YM G ++ AY F + L L+TS NL+
Sbjct: 88 FIDPLTSIMSILITTVGILVLIYSDNYMSHDQG--YLRFFAYMGFFNTSMLGLVTSSNLI 145
Query: 119 WFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSL- 174
FFWEL+ + S++LI W + K ++ + F L + + Y GS
Sbjct: 146 QVYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFGLLLGILGLYWITGSFE 204
Query: 175 --DAMTYPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFWVPSTYKVAPSNIS 226
D N L + LL L AF+ AKS P H W+P + P+ IS
Sbjct: 205 FQDLFEIFNNLILNNRVNLLFLT--LCAFLLFVGPIAKSAQFPLHVWLPDAME-GPTPIS 261
Query: 227 SLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+L+ A M +F + R++ + P SI Y+++L+G +T+ +G AL + D K+ LA
Sbjct: 262 ALIHAATMVAAGIFLVARLLPLFIVIP-SIMYIISLIGIITVLLGATLALAQKDIKRGLA 320
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---- 341
Y ++ Q+GY+ L +G+G + +FH + H+ K LFL +GS+ ++
Sbjct: 321 YSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLFLGSGSIIHSMEAI 370
Query: 342 -----TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDM 396
N+ +GGL + + T A L+ +L++ G+PP F SK I N +
Sbjct: 371 VGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEI----LNDSLL 426
Query: 397 VLSFGAVLAVFISAVTLASFIKFYTSQFGGESERY 431
A++A + +T + Y F G Y
Sbjct: 427 FSPIFAIIACSTAGLTAFYMFRIYLLTFEGHLNTY 461
>gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Prototheca wickerhamii]
>gi|7432521|pir||T11917 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Prototheca wickerhamii
mitochondrion >gi|467849|gb|AAD12636.1| (U02970) NADH
deydrogenase (ubiquinone), subunit 5 [Prototheca
wickerhamii]
Length = 689
Score = 123 bits (307), Expect = 4e-27
Identities = 115/471 (24%), Positives = 204/471 (42%), Gaps = 43/471 (9%)
Query: 60 YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLV 118
Y D ++I +L++ + LYSI YME P ++Y + L+L+TS N +
Sbjct: 90 YFDSLTVIMLLVITSISTLVHLYSISYMEADP--HLPRFMSYLSIFTFFMLMLVTSDNFL 147
Query: 119 WFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGV--SYSFLGSLDA 176
F WE + L+S++LI + AM + ++LGV ++S ++D
Sbjct: 148 QMFFGWEGVGLASYLLINFWFTRLQASKASIKAMLVNRVGDFGLALGVMATFSVFKTVDF 207
Query: 177 MTYPNLKSLPSSATLL-----------LYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNI 225
T L + S A L+ + + + KS + H W+P + P+ +
Sbjct: 208 YTVFALAAHQSEAVLVFCNVEFHALTVICILLFVGAVGKSAQLGLHTWLPDAME-GPTPV 266
Query: 226 SSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLL 284
S+L+ A M VF + R PK++ +VA++GA+T + ++D K+++
Sbjct: 267 SALIHAATMVTAGVFMIARCSPLFEYAPKAL-VVVAIVGAMTCFFAATTGVVQNDLKRVI 325
Query: 285 AYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TG 343
AY + Q+GY+ GI G+FH +NH+ FK LFLSAGSV ++
Sbjct: 326 AYSTASQLGYMIFACGISQYT----------VGVFHLMNHAFFKALLFLSAGSVIHSLAD 375
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLS 399
+ ++ +GG+A+ + +T + S ++ G P GF SK +I + +
Sbjct: 376 QQDMRKMGGMAKLLPFTFAMMSIGSFSLIGFPFLTGFYSKDVILEVAFARYTWDANFAYL 435
Query: 400 FGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG--- 456
FG+V F S + + + + + P + +P +LS + +G
Sbjct: 436 FGSVCVAFTSYYSFRLLFLTFIAPTNAYKSTVKIAHDAPFLLALPLFLLSIGSIFVGYCA 495
Query: 457 --IFPALVVPLINEPIGAPISTSLYLNFD----STAFSPLIFGLLIVTLAF 501
+ L P + I ++ L + ST F PL+ LL A+
Sbjct: 496 KDMMIGLGTPFWSNAIFVLPQNNVLLESEFIPQSTKFLPLVSTLLGAVTAY 546
>gi|5835468 NADH dehydrogenase subunit 5 [Florometra serratissima]
>gi|7432486|pir||T11125 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Florometra serratissima
mitochondrion >gi|2970432|gb|AAD05082.1| (AF049132) NADH
dehydrogenase subunit 5 [Florometra serratissima]
Length = 627
Score = 123 bits (307), Expect = 4e-27
Identities = 115/405 (28%), Positives = 182/405 (44%), Gaps = 34/405 (8%)
Query: 19 GGLSKKAFKVSSAFA--------ALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFML 70
G LS + K+ S F+ +L +I ++FN EG L D FSL F
Sbjct: 53 GQLSISSLKLISFFSLINFYLYLSLGCPNINIILFNWLSNEGFLGSFSFCFDFFSLCFFF 112
Query: 71 ILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFF-WELMTL 129
+ G + +S +S YM P W L L+L++SN ++F+F WE +
Sbjct: 113 VGGYVTWSIVQFSYYYMGDDP--RWFSFFRLLLIFLLNMLLLVSSNNLFFIFVGWEGVGF 170
Query: 130 SSFILITWDEKDF--DPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAM-TYPNLKSLP 186
SF+LI+W + + + + I LG+ + + + + Y L +
Sbjct: 171 LSFLLISWWNTRVVANSSALEAVIYNRIGDVGFLILLGICFVYFNTWSLLEVYGLLNNAN 230
Query: 187 SSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIA-VFGLIRIM 245
S + S L+A +AKS V FH W+P+ + P+ +S+LL + +A VF LIR+
Sbjct: 231 SLIINGILFSGLLASIAKSAQVGFHPWLPAAME-GPTPVSALLHSSTMVVAGVFFLIRLG 289
Query: 246 YTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSL 305
+ L P +G VT AL + D KK++AY + Q+G + + IG+G
Sbjct: 290 -SLLNFPSFFCSFCLFIGGVTSLFAASAALVQHDIKKIIAYSTTSQLGLMVVSIGLG--- 345
Query: 306 DSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNLGGLAERMKWTGLAT 364
FH H+ FK LFL +GS+ ++ E ++ +GGL + T
Sbjct: 346 -------SYIIAFFHICTHAFFKAMLFLCSGSIIHSLNNEQDIRKMGGLFFLLPVTSSCI 398
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
LL SLA+ G P GF SK LI G ++SF +F++
Sbjct: 399 LLGSLALVGTPFLAGFYSKDLILELG------LISFSNFFGIFLA 437
>gb|AAF08154.1| (AF130198) NADH dehydrogenase subunit F [Angelica gigas]
Length = 748
Score = 123 bits (307), Expect = 4e-27
Identities = 117/465 (25%), Positives = 210/465 (45%), Gaps = 62/465 (13%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ +L + K+ + AF ++ LSIV ++F++ ++ G +Y
Sbjct: 14 LPLPVPMLIGAGLLLFPSATKSLRRMWAFQSVFLLSIV-MIFSINLFIQQINGSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTIGIMVLIYSDNYMSYDQG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYASFLIAFM-----AKSGIVPFH 211
+ + Y GS + + NL S + L+ +F + AKS P H
Sbjct: 190 LLGILGFYWITGSFEFRDLFKIFNNLISNNHNEVNFLFVTFCAVLLFSGAVAKSAQFPLH 249
Query: 212 FWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG 270
W+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +T+ G
Sbjct: 250 VWLPDAME-GPTPISALIHAATMVAAGIFLVARLIPLFIVIPHIMNF-ISLVGVITILFG 307
Query: 271 TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGS 330
+AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 308 ATFALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKAL 357
Query: 331 LFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFL 381
LFL +GSV ++ N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 358 LFLGSGSVIHSMETIVGYSPNKSQNMVYMGGLTKHIPITKTAFLLGTLSLCGIPPLACFW 417
Query: 382 SKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A F + +T + Y F G
Sbjct: 418 SKDEI----LNDSWLYSPIFAIIAWFTAGLTAFYMFRIYLLTFEG 458
>gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia uncinioides]
Length = 626
Score = 123 bits (307), Expect = 4e-27
Identities = 113/425 (26%), Positives = 190/425 (44%), Gaps = 58/425 (13%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 13 IDSITSIMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 70
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 71 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEF 129
Query: 177 MTYPNLKS-------LPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
+ + + S T L + +AKS P H W+P + P+ IS+L+
Sbjct: 130 RDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPISALI 188
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY +
Sbjct: 189 HAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQIDIKRSLAYST 247
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT------ 342
+ Q+GYI L +GIG S +FH + H K LFL +GS+ ++
Sbjct: 248 MSQLGYIILALGIGSSR----------TALFHLITHGYSKALLFLGSGSIIHSMEPVVGY 297
Query: 343 ---GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WLI------ 386
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 298 SPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLGCFWSKDEILSNSWLYSPIFGI 357
Query: 387 -------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE--SERYRDVSEV 437
TA Y +L+F L + + FY+ G+ S+R ++
Sbjct: 358 ITYFTTGLTAFYMFRVYLLTFDGYLRIHFQGYSSTKTNLFYSISLWGKNMSKRSNTDRDL 417
Query: 438 PLSMV 442
PLS +
Sbjct: 418 PLSTI 422
>pir||T12696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Brachyelytrum erectum chloroplast (fragment)
>gi|726174|gb|AAA64209.1| (U22005) NADH dehydrogenase F
[Brachyelytrum erectum]
Length = 703
Score = 123 bits (306), Expect = 6e-27
Identities = 113/442 (25%), Positives = 196/442 (43%), Gaps = 48/442 (10%)
Query: 7 ALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL 66
A P VLF+ + F V + + SI +++ L ID +
Sbjct: 33 AFPSVLFLSVAM------VFSVQLSIQQINGSSIYQYLWSWTVNNDFSLEFGYLIDPLTS 86
Query: 67 IFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFW 124
I ++++ +G +YS YM G + +VY +N SM ++ +SNL+ FFW
Sbjct: 87 IMLILITTVGILVLIYSDGYMSHDEGYFRFFVYISFFNT---SMLGLVTSSNLIQIYFFW 143
Query: 125 ELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD------ 175
EL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 144 ELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFK 202
Query: 176 -AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAM 233
A + + S T L + +AKS P H W+P + P+ IS+L+ A M
Sbjct: 203 IANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHIWLPDAME-GPTPISALIHAATM 261
Query: 234 EKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMG 293
+F L R++ + P + + ++L+G +TL +G A+ + D K+ LAY ++ Q+G
Sbjct: 262 VAAGIFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLAVAQRDIKRSLAYSTMSQLG 320
Query: 294 YIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGE 344
Y+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 321 YMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLLGYSPDRS 370
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVL 404
N+ +GGL + + T L +L++ G+PP F SK I + + + F ++
Sbjct: 371 QNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGII 426
Query: 405 AVFISAVTLASFIKFYTSQFGG 426
A F + +T + Y F G
Sbjct: 427 ASFTAGLTAFYMFRIYLLTFDG 448
>gb|AAA64780.1| (U21975) NADH dehydrogenase F [Zoysia matrella]
Length = 702
Score = 123 bits (306), Expect = 6e-27
Identities = 116/445 (26%), Positives = 198/445 (44%), Gaps = 54/445 (12%)
Query: 7 ALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL 66
A P VLF+ L F V + + SI +++ L ID +
Sbjct: 33 AFPSVLFLSVAL------VFSVHLSIQQIKGSSIYQYLWSWTINNDFSLEFGYLIDPLTS 86
Query: 67 IFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFW 124
I ++++ +G +YS YM G + +VY +N SM ++ +SNL+ FFW
Sbjct: 87 IMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFW 143
Query: 125 ELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD------ 175
EL+ + S++LI W + K ++ + F L + + + GSL+
Sbjct: 144 ELVGMCSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFK 202
Query: 176 -AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAM 233
A + + S T L + +AKS P H W+P + P+ IS+L+ A M
Sbjct: 203 IANNWIPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATM 261
Query: 234 EKIAVFGLIRIMYTALPTPKSIGYL---VALLGAVTLTVGTLYALRESDAKKLLAYHSIG 290
+F + R+ LP +S+ ++ ++L+G +TL +G AL + D K+ LAY ++
Sbjct: 262 VAAGIFLIARL----LPLFRSLPFIMSFISLVGTITLFLGATLALAQRDIKRSLAYSTMS 317
Query: 291 QMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA--------- 341
Q+GY+ L +GIG A +FH + H+ K LFL +GSV ++
Sbjct: 318 QLGYMMLALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSP 367
Query: 342 TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG 401
N+ +GGL + + T L +L++ G+PP F SK I + + + F
Sbjct: 368 DKSQNMVLMGGLKKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFF 423
Query: 402 AVLAVFISAVTLASFIKFYTSQFGG 426
++A F + +T + Y F G
Sbjct: 424 GIIASFTAGLTAFYMFRIYLLTFDG 448
>gb|AAA64841.1| (U21976) NADH dehydrogenase F [Setaria viridis]
Length = 701
Score = 123 bits (306), Expect = 6e-27
Identities = 115/437 (26%), Positives = 196/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI ALVF++ ++ G +Y ID + I +++
Sbjct: 33 AFPSILLLSI-ALVFSVHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N +L + + +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTAMLGL---VTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M V
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAXV 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F + R+ + P + + ++L+G VTL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLVARLFPLFISLPLIMNF-ISLVGTVTLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYEAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gi|6137788 NADH dehydrogenase subunit 5 [Metridium senile]
>gi|3122548|sp|Q35099|NU5M_METSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 >gi|7432548|pir||T11889 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - sea
anemone (Metridium senile) mitochondrion
>gi|1353408|gb|AAC47102.1| (U36784) NADH dehydrogenase
subunit 5 [Metridium senile] >gi|2920990|gb|AAC04635.1|
(AF000023) NADH dehydrogenase subunit 5 [Metridium
senile]
Length = 600
Score = 123 bits (306), Expect = 6e-27
Identities = 109/442 (24%), Positives = 199/442 (44%), Gaps = 31/442 (7%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D + + ++++ + ++S YM+ P + + F M L++ + N
Sbjct: 79 DSLTAVMLIVVTSISTLVHIFSTAYMDGDPHVPRFMSYL-SLFTFFMILLVTSDNYPQLF 137
Query: 122 FFWELMTLSSFILITWDEKDFDPGIKYYIAMHI--LTTFPLFISLGVSYSFLGSLDAMTY 179
WE + L S++LI + + AM + + +++ + G LD +
Sbjct: 138 IGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGFVLAMLAIWDQFGCLDFASV 197
Query: 180 PNLKSL-PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIA 237
N+ +L PS T L+ I + KS + H W+P + P+ +S+L+ A M
Sbjct: 198 FNIVALAPSDNTTLICLFLFIGAVGKSAQLGLHTWLPDAME-GPTPVSALIHAATMVTAG 256
Query: 238 VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
VF LIR P ++ +V ++G++T + L ++D KK++AY + Q+GY+ +
Sbjct: 257 VFLLIRSSPLLEQAPMAL-MVVTIVGSLTAFMAATIGLVQNDLKKVIAYSTCSQLGYMVM 315
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNLGGLAER 356
G+ S +FH +NH+ FK LFLSAGSV +A E ++ +GGL
Sbjct: 316 ACGLSQYSIS----------LFHLMNHAFFKALLFLSAGSVIHALADEQDMRKMGGLIRS 365
Query: 357 MKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASF 416
+ +T ++ SL++ G P GF SK LI Y+ L+F L VF + +T A
Sbjct: 366 IPFTYTMIVIGSLSLMGFPYLTGFYSKDLILELAYD--QYYLAFAHWLGVFSALLTAAYS 423
Query: 417 IKF----YTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGA 472
++ + S + E + E ++ +P ++L+ + +G ++ +
Sbjct: 424 LRLIYLTFISNTNAKKEVFSQAHEGSWNLTLPLILLALGSIFVGYLTKEIIWSFQITLSP 483
Query: 473 PISTSLYLNFDSTAFSPLIFGL 494
I TS+ L P+IF L
Sbjct: 484 IIPTSIKL-------MPVIFSL 498
>sp|Q9XAR5|NUOL_STRCO NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|7480296|pir||T34613 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Streptomyces coelicolor >gi|5042266|emb|CAB44520.1|
(AL078618) nuoN, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 654
Score = 123 bits (306), Expect = 6e-27
Identities = 112/408 (27%), Positives = 181/408 (43%), Gaps = 37/408 (9%)
Query: 44 VFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNA 103
+F+ PVEG + +D S+ F+L++ +G LYS+ YME H + + N
Sbjct: 66 LFSWIPVEGFQADVAFRLDQLSMTFVLLITGVGSLIHLYSVAYME-HDERRRRFFGYLNL 124
Query: 104 FLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFIS 163
FL +M ++++ N + WE + L+S++LI + + A + + +S
Sbjct: 125 FLAAMLILVLADNYLLLYVGWEGVGLASYLLIGFWQHKPSAATAAKKAFLVNRVGDMGLS 184
Query: 164 LGVSYSFL--------------GSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVP 209
+G+ FL G + L + A +LL A+ KS VP
Sbjct: 185 IGIMLMFLWFGTFAFGPVLGGHGEAGLAAGADEGKLTAIALMLLLAA-----CGKSAQVP 239
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIR--IMYTALPTPKSIGYLVALLGAVT 266
W+ + P+ +S+L+ A M V+ ++R ++ P + + V ++GAVT
Sbjct: 240 LQSWLGDAME-GPTPVSALIHAATMVTAGVYLIVRSGAIFNGAPDAQLV---VTIVGAVT 295
Query: 267 LTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSL 326
L G + + D KK LA ++ Q+GY+ L G LG +G I H + H
Sbjct: 296 LLFGAIVGCAKDDIKKALAGSTMSQIGYMVLAAG--------LGPIGYVFAIMHLVTHGF 347
Query: 327 FKGSLFLSAGSVEYA-TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWL 385
FK LFL AGSV + E ++ GGL + M T + L LAI G P +GF SK
Sbjct: 348 FKAGLFLGAGSVMHGMNDEVDMRRYGGLRKYMPVTFVTFGLGYLAIIGFPGLSGFFSKDK 407
Query: 386 IYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRD 433
I A + G A+ +A+T + F GE ER+R+
Sbjct: 408 IIEAAFAKGGTEGWILGACALLGAAITAYYMTRVMLMTFFGE-ERWRN 454
>gb|AAG12214.1| (AF163448) NADH dehydrogenase subunit F [Carex hakkodensis]
Length = 633
Score = 123 bits (306), Expect = 6e-27
Identities = 114/426 (26%), Positives = 195/426 (45%), Gaps = 60/426 (14%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 17 IDSLTSIMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 74
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA 176
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 75 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEF 133
Query: 177 MTYPNLKSL--------PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSL 228
+ + P TL + F+ A +AKS P H W+P + P+ +S+L
Sbjct: 134 RDLFEITNNLIHKNGVNPLFTTLCTFLLFVGA-IAKSAQFPLHIWLPDAME-GPTPVSAL 191
Query: 229 L-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYH 287
+ A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LAY
Sbjct: 192 IHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLFLGATLALAQIDIKRSLAYS 250
Query: 288 SIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYAT----- 342
++ Q+GYI L +GIG S +FH + H+ K LFL +GS+ ++
Sbjct: 251 TMSQLGYIILALGIGSSR----------TALFHLITHAYSKALLFLGSGSIIHSMEPVVG 300
Query: 343 ----GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WL------ 385
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 301 YSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLYSPIFG 360
Query: 386 ---IYTAGYNSGDM----VLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSE-- 436
+T G + M +L+F L + + FY+ G+S R ++
Sbjct: 361 IITYFTTGLTAFXMFXVYLLTFDGYLRIHFQGYSSTKTNLFYSISLWGKSMSKRSNTDRN 420
Query: 437 VPLSMV 442
+PLS +
Sbjct: 421 LPLSTI 426
>gb|AAG12215.1| (AF163449) NADH dehydrogenase subunit F [Carex leptalea]
Length = 700
Score = 123 bits (306), Expect = 6e-27
Identities = 113/428 (26%), Positives = 194/428 (44%), Gaps = 61/428 (14%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILITSNLVW 119
ID + I + ++ +G + +YS YM + ++ AY N F SM ++ +SNL+
Sbjct: 79 IDSLTSIMLTLITTVGITVLIYSDNYMSHD--QAYLRFFAYLNLFNASMLGLVTSSNLIQ 136
Query: 120 FVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD- 175
FWE++ + S++LI W + K ++ + F L + + Y +GS +
Sbjct: 137 IYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGILGFYWIIGSFEF 195
Query: 176 ---------AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
+ + SL ++ L + +AKS P H W+P + P+ IS
Sbjct: 196 RDLFEITNNLIQKNGVNSLFTTLCTLCTFLLFVGAIAKSAQFPLHIWLPDAME-GPTPIS 254
Query: 227 SLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+L+ A M VF + R+ L TP +I ++++ +G +TL +G AL + D K+ LA
Sbjct: 255 ALIHAATMVAAGVFLVARLFPLLLITP-NIMHIISSIGLITLLLGATLALAQVDIKRSLA 313
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---- 341
Y ++ Q+GYI L +GIG S +FH + H+ K LFL +GS+ ++
Sbjct: 314 YSTMSQLGYIILALGIGSSR----------TALFHLITHAYSKALLFLGSGSIIHSMEPV 363
Query: 342 -----TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK-------WL---- 385
N+ +GGL + + T A LL +L++ G+PP F SK WL
Sbjct: 364 VGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKDEILSNSWLHSPI 423
Query: 386 -----IYTAGYNSGDM----VLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSE 436
+T G + M +L+F L + + FY+ G+S R ++
Sbjct: 424 FGIITYFTTGLTAFYMFXVYLLTFDGYLRIHFQGYSSTKTNLFYSISLWGKSMSKRSNTD 483
Query: 437 --VPLSMV 442
+PLS +
Sbjct: 484 RNLPLSTI 491
>gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum]
Length = 702
Score = 123 bits (305), Expect = 8e-27
Identities = 114/437 (26%), Positives = 196/437 (44%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI ALVF++ ++ G +Y ID + I +++
Sbjct: 33 AFPSILLLSI-ALVFSVHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLIDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N +L + + +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTAMLGL---VTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHATTMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R+ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLFPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYEAALFHLITHAYSKALLFLGSGSVIHSMESLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>gi|5835676 NADH dehydrogenase subunit 5 [Artibeus jamaicensis]
>gi|7432544|pir||T11150 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - fruit bat (Artibeus jamaicensis)
mitochondrion >gi|4164484|gb|AAD05447.1| (AF061340) NADH
dehydrogenase subunit 5 [Artibeus jamaicensis]
Length = 606
Score = 123 bits (305), Expect = 8e-27
Identities = 91/338 (26%), Positives = 158/338 (45%), Gaps = 18/338 (5%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
L L +D FS++FM + + +S +S+ YM P + FL++M +++
Sbjct: 76 LSLSFKLDFFSILFMPVALFVTWSILEFSMWYMHSDPNINRFFKYLL-MFLITMLILVTA 134
Query: 115 SNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W +D + I + + +S+ ++L
Sbjct: 135 NNLFQLFIGWEGVGIMSFLLIGWWFGRRDANTAALQAILYNRIGDIGFILSMAWFLTYLN 194
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+ + +L + P+S L+ L+A KS H W+PS + P+ +S+LL +
Sbjct: 195 TWELQQIFSLNTTPNSLPLM---GLLLAATGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQM 292
+A L+ Y + I LGA+T + AL ++D KK++A+ + Q+
Sbjct: 251 TMVVAGIFLLIRFYPLMENNTMIQTTALCLGAITTLFTAMCALTQNDIKKIIAFSTSSQL 310
Query: 293 GYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG-ETNLDNLG 351
G + + IGI H H+ FK LF+ +GS+ ++ G E ++ +G
Sbjct: 311 GLMMVTIGINQP----------HLAFLHICTHAFFKAMLFMCSGSIIHSLGDEQDIRKMG 360
Query: 352 GLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTA 389
GL + M +T A + SLA++G P GF SK LI A
Sbjct: 361 GLYKTMPFTSTAMTVGSLALTGTPFLTGFYSKDLIIEA 398
>gi|7335679 NADH dehydrogenase subunit 5 [Pupa strigosa]
>gi|6683072|dbj|BAA89017.1| (AB028237) ND5 [Pupa
strigosa]
Length = 526
Score = 123 bits (305), Expect = 8e-27
Identities = 116/476 (24%), Positives = 215/476 (44%), Gaps = 59/476 (12%)
Query: 45 FNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
F L V L +D S+ F +++ ++ S L+ YME P + + AF
Sbjct: 28 FELVQVSTSSFNLVFVLDKVSVSFSIVVTLISSSVFLFGQKYMEEDPFSTRFFWILL-AF 86
Query: 105 LLSMFLILITSNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIA------MHILT 156
++SM L++ ++++ + W+ + +SSF LI + ++ G + + + +LT
Sbjct: 87 VISMNLLIFAGSVLFLLLGWDGLGISSFALIIYYQSKESLSAGFQTLLVNRLGDCLIVLT 146
Query: 157 TFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPS 216
F LF+ G +S++ D M +L +L +A M KS PF W+P+
Sbjct: 147 VF-LFVLNG-QFSYISMSDTMLSGSLLTL-----------IALAAMTKSAQYPFSSWLPA 193
Query: 217 TYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYAL 275
AP+ +S+L+ + + ++ LIR +P S+ L+ G++T +G A
Sbjct: 194 AM-AAPTPVSALVHSSTLVTAGIYLLIRFSLN-IPLNNSVTALLLWTGSITCLLGGWAAT 251
Query: 276 RESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSA 335
E+D KK++A ++ Q+G + +G+ L S +FH H++F LFL+A
Sbjct: 252 YENDVKKIIALSTLSQLGVMVFSLGLNLPQLS----------LFHLYTHAMFSALLFLAA 301
Query: 336 GSVEYAT-GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG 394
G + + G +L LGG+ M +T + ++SL + P + F SK LI
Sbjct: 302 GHILLTSFGSQDLRMLGGIGMTMPYTCIMFNISSLCLVAAPFLSAFYSKHLILEM----- 356
Query: 395 DMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI 454
M+ S+ ++L + + V K+ S ++D V P +LSS C +
Sbjct: 357 -MMCSWASMLNILLMGVATLMTAKYVARMMMAVS--WKDT-------VAP--LLSSSCSV 404
Query: 455 IGIFPALVV---PLINEPIGAPISTSLYLNFDSTAFSPLIFGLLIVTLAFGTYIGL 507
P L++ +++ + + TSL F+ P+I L + G ++G+
Sbjct: 405 YTWMPVLLLGGGGIVSGKFLSSLDTSL---FEGVVLPPMINNTLNLVTIIGLFLGI 457
>gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba caroliniana]
Length = 414
Score = 123 bits (305), Expect = 8e-27
Identities = 109/400 (27%), Positives = 180/400 (44%), Gaps = 45/400 (11%)
Query: 7 ALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL 66
A P VL + ++ F A + SI +++ L ID +
Sbjct: 24 AFPAVLLLTTVM------VFSTKLAIQQINGSSIYEYLWSWTITSDFSLEFGYLIDPLTS 77
Query: 67 IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWE 125
I ++++ +G +YS YM G ++ AY F + L L+TS NL+ FWE
Sbjct: 78 IMLILITTVGIMVLIYSDNYMSHDRG--YLRFFAYMTFFTTSMLGLVTSPNLIQIYIFWE 135
Query: 126 LMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA------ 176
L+ + S++LI W + K ++ + F L + + Y GS +
Sbjct: 136 LVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFGLLLGILGFYLLTGSFEFQDLFEI 194
Query: 177 ---MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGA 232
+ N + S ATL + FL A +AKS P H W+P + P+ IS+L+ A
Sbjct: 195 FNNLIINNNEINSSFATLCAFLLFLGA-VAKSAQFPLHVWLPDAME-GPTPISALIHAAT 252
Query: 233 MEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQM 292
M +F + R++ + P + ++AL+G +T+ +G AL + D K+ LAY ++ Q+
Sbjct: 253 MVAAGIFLVARLLPLFIVIPYIMN-IIALIGIITVLLGATLALAQRDIKRSLAYSTMSQL 311
Query: 293 GYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TG 343
GYI L +GIG A +FH + H+ K LFL +GS+ ++
Sbjct: 312 GYIMLALGIG----------SYRAALFHLITHAYSKALLFLGSGSIIHSMEPIVGYSPAK 361
Query: 344 ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
N+ +GGL + M T L +L++ G+PP F SK
Sbjct: 362 SQNMALMGGLTKYMPITKTTFFLGTLSLCGIPPLACFWSK 401
>sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|66188|pir||DNOBU5 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
evening primrose mitochondrion
>gi|5441461|emb|CAA30448.3| (X07566) NADH dehydrogenase
subunit 5 [Oenothera berteriana]
Length = 670
Score = 122 bits (304), Expect = 1e-26
Identities = 107/416 (25%), Positives = 189/416 (44%), Gaps = 37/416 (8%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D +++ ++++ + LYSI YM P + + F M +++ N +
Sbjct: 79 DSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPR-FMCYLSIFTFFMPMLVTGDNFLQLF 137
Query: 122 FFWELMTLSSFILITW-------DEKDFDPGI-----KYYIAMHILTTFPLFISLGVSYS 169
WE + L+S++LI + D+ + + +A+ IL F LF ++ S
Sbjct: 138 LGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTI 197
Query: 170 FLGSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
F + ++ +A L+ LI + KS + H W+P + P+ +S+L+
Sbjct: 198 FACASAPRNSWISCNMRLNAITLICILLLIGAVGKSAQIGLHTWLPDAME-GPTPVSALI 256
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R +P ++ ++ GA+T + + ++D K+++AY +
Sbjct: 257 HAATMVTAGVFMIARCSPLFEYSPTAL-IVITFAGAMTSFLAATTGILQNDLKRVIAYST 315
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNL 347
Q+GY+ GI +FH +NH+ FK LFLSAGSV +A + E ++
Sbjct: 316 CSQLGYMIFACGIS----------NYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDM 365
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLSFGAV 403
+GGLA +T L+ SL++ G P GF SK +I Y SG+ G+V
Sbjct: 366 RKMGGLASSFPFTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSV 425
Query: 404 LAVFISAVTL-ASFIKFY--TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG 456
+F S + F+ F T+ FG + R D P+ M +P ++L+ L +G
Sbjct: 426 SVLFTSYYSFRLLFLTFLVPTNSFGRDILRCHD---APIPMAIPLILLALGSLFVG 478
>gi|11466311 NADH dehydrogenase subunit 5 [Cafeteria roenbergensis]
>gi|6180093|gb|AAF05790.1|AF193903_13 (AF193903) NADH
dehydrogenase subunit 5 [Cafeteria roenbergensis]
Length = 675
Score = 122 bits (304), Expect = 1e-26
Identities = 118/473 (24%), Positives = 211/473 (43%), Gaps = 44/473 (9%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D + + ++++ + +YS+ YM+ P + ++Y +F LIL+T N + +
Sbjct: 79 DSLTALMLIVVSSISTCVHIYSLEYMQEDPHVQRF--MSYLSFFTFFMLILVTGNNLLQM 136
Query: 122 FF-WELMTLSSFILITWDEKDFDPGIKYYIAMHI--LTTFPLFISLGVSYSFLGSLD--- 175
F WE + L S++LI + AM + + F L + L ++++ ++D
Sbjct: 137 FMGWEGVGLCSYLLINFWFHRLQANKAALKAMIVNRIGDFGLALGLFLTFTTFKTIDYDL 196
Query: 176 ---AMTYPN------LKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
+ TY + + SL L+ + + KS + H W+P + P+ +S
Sbjct: 197 LQISSTYFSQHYLTYIGSLSFETISLISLLLFVGAVGKSAQIGLHTWLPDAME-GPTPVS 255
Query: 227 SLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+L+ A M VF + R Y +P +IG L+ +LG++T + L ++D K+++A
Sbjct: 256 ALIHAATMVTAGVFLICRTFYLFEYSP-NIGILITILGSLTAFIAGTIGLVQNDLKRVIA 314
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGE 344
Y + Q+GY+ G+ +H NH+ FK +LF+ AGSV +A E
Sbjct: 315 YSTCSQLGYMVFACGVS----------HYDVAFYHLTNHAFFKAALFMGAGSVIHALQDE 364
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFG--- 401
++ GGL + +T + L+ SL++ G P GF SK I AG + + SFG
Sbjct: 365 QDMRKFGGLKNFLYFTFIVILIGSLSLIGFPFLTGFFSKDAILEAGSSFLTLESSFGFSL 424
Query: 402 AVLAVFISA-VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFP 459
+L FI+A ++ S + + + G + E M P +ILS G +F
Sbjct: 425 GILGAFITAFYSVRSLARTFLQKPLGFKNYFEKSHESGFWMNAPLIILSVAGFCAGYLFN 484
Query: 460 ALVVPLINE----PIGAPISTSLYLNFDS----TAFSPLIFGLLIVTLAFGTY 504
L++ + IG + +L ++ PLIF L +F Y
Sbjct: 485 ELIIGFASNYWQTSIGRLYDNNTFLELENLDNLIKLLPLIFTFLGAFSSFLIY 537
>emb|CAC17751.1| (AJ400892) NADH dehydrogenase subunit F [Deutzia rubens]
Length = 656
Score = 122 bits (304), Expect = 1e-26
Identities = 114/421 (27%), Positives = 189/421 (44%), Gaps = 38/421 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 52 FSIDLSIQQINSSSIYQNVWSWVINNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDS 111
Query: 86 YMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F SMF ++ +SNL+ FWEL+ + S++LI W +
Sbjct: 112 YMSHDQG--YLRFFAYMSFFSTSMFGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 169
Query: 144 PGI--KYYIAMHILTTFPLFISLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
K ++ + L LG S+ F + +T K+ + L + A
Sbjct: 170 ANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIVTNLIYKNEVNLLFLTICAV 229
Query: 197 FL-IAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKS 254
L + +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 230 LLFVGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPFI 288
Query: 255 IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGM 314
I L++ +G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 289 IN-LISFIGIITLLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------SY 337
Query: 315 FAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATL 365
+FH + H+ K LFL +GSV E G N+ +GGL + + T A
Sbjct: 338 RTALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFF 397
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG 425
L +L++ G+PP F SK I N + A++A + +T + Y FG
Sbjct: 398 LGTLSLCGIPPLACFWSKDEI----INDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFG 453
Query: 426 G 426
G
Sbjct: 454 G 454
>gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880797|gb|AAD54890.1|AF137379_113
(AF137379) subunit 5 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 648
Score = 122 bits (303), Expect = 1e-26
Identities = 123/472 (26%), Positives = 206/472 (43%), Gaps = 41/472 (8%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY-NAFLLSMFLILI 113
L + ++D + ++++ + +YS YM H + +V Y + F SM +++
Sbjct: 83 LEIGYWVDPLTSTMLVVVTSVALLVMIYSDEYM--HVDEGYVRFFVYLSIFTTSMLGLVL 140
Query: 114 TSNLVWFVFFWELMTLSSFILIT-WDEKDF--DPGIKYYIAMHILTTFPLFISLGVSYSF 170
+ NLV FWEL+ + S++L+ W + + K +I + F L + + Y
Sbjct: 141 SPNLVQVYGFWELVGMCSYLLVGFWFTRPTAAEASQKAFITNRV-GDFGLLLGILALYWM 199
Query: 171 LGSLDAMTYPN-----LKSLPSSATLLLYASFLIAF--MAKSGIVPFHFWVPSTYKVAPS 223
GS + + + L ++PS T+ A L+ +AKS P H W+P + P+
Sbjct: 200 TGSFEFASIADRLGDLLIAIPSLRTIACIACILVFMGPIAKSAQFPLHVWLPDAME-GPT 258
Query: 224 NISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKL 283
IS+L+ A A L+ M+ + L+A G +T +G AL +SD KK
Sbjct: 259 PISALIHAATMVAAGVFLVARMFPVFDQLPLVMELIAWTGTLTAFLGATMALTQSDIKKG 318
Query: 284 LAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV----E 339
LAY ++ Q+GY+ + +G G ++ +FH H+ K LFL+AGSV E
Sbjct: 319 LAYSTMSQLGYMIMALGTGAYSEA----------LFHLTTHAYSKALLFLAAGSVIHGME 368
Query: 340 YATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSG 394
G N+ +GGL + M T + LL + +I G+PP F SK I + +
Sbjct: 369 PVVGFSPMQNQNMHRMGGLRKYMPLTAMTFLLGTCSICGIPPLACFWSKDAILAEVFATH 428
Query: 395 DMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLI 454
+ A + + F + R + E L MV P +IL+ +
Sbjct: 429 PTCWLIAWLTAGMTGFYMFRIYFLTFEGSFRSDLGRAKP-KESHLGMVAPLIILAIPTVA 487
Query: 455 IGIFPALVVPLINEPIGAPIS-TSLYLNFDSTAF-----SPLIFGLLIVTLA 500
IG P+ + AP +SL FD F S + GLL ++L+
Sbjct: 488 IGSLGTPFAPVWETFVHAPGQLSSLDEEFDLAEFLEMAGSSVGIGLLGISLS 539
>gb|AAG28187.1|AF304200_11 (AF304200) NADH5 [Sus scrofa]
Length = 606
Score = 122 bits (303), Expect = 1e-26
Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 27/447 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + + Y + FL++M +++
Sbjct: 76 LSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLL---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W D A+ + L +++ FL
Sbjct: 133 TANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAW-FLT 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+A + + L + + L+A KS H W+PS + P+ +S+LL +
Sbjct: 192 HSNAWDFQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR Y + T K + + LGA+T L A+ ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-YPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T A ++ SLA++G+P GF SK LI A S ++ ++ + ++
Sbjct: 360 GGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAANMS--YTNAWALLMTLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + F G+ R V ++ P LI S L+IG IF ++ P
Sbjct: 418 LTAAYSTRIIFFAFLGQP---RFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPP 474
Query: 470 IGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P +T++ L TA I G ++
Sbjct: 475 MTVP-NTTMPLYMKMTALIVTIMGFML 500
>gi|11610814 NADH dehydrogenase subunit 5 [Chalinolobus tuberculatus]
>gi|11545699|gb|AAG37935.1|AF321051_10 (AF321051) NADH
dehydrogenase subunit 5 [Chalinolobus tuberculatus]
Length = 608
Score = 122 bits (303), Expect = 1e-26
Identities = 103/363 (28%), Positives = 175/363 (47%), Gaps = 23/363 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
L L +D FS++FM I + +S +S+ YM P + Y L LIL+T
Sbjct: 76 LTLSFKLDFFSMVFMPIALFITWSIMEFSMWYMHSDPNINRFFK--YLLMFLITMLILVT 133
Query: 115 SNLVWFVFF-WELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGS 173
+N ++ +F WE + + SF+LI W D A+ + L +++ + S
Sbjct: 134 ANNMFQLFIGWEGVGIMSFMLIGWWYGRTDANTAALQAILYNRIGDIGFILSMAWFMINS 193
Query: 174 LDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAM 233
++ + L + T L A L+A KS H W+PS + P+ +S+LL +
Sbjct: 194 -NSWEIQQIFILSTENTTLPLAGLLLAATGKSAQFGLHPWLPSAME-GPTPVSALLHSST 251
Query: 234 EKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMG 293
+A L+ Y + K+I L LGA+T + AL ++D KK++A+ + Q+G
Sbjct: 252 MVVAGIFLLIRFYPLMENNKTIMTLALCLGAITTLFTAICALTQNDIKKIVAFSTSSQLG 311
Query: 294 YIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNLGG 352
+ + IGI H H+ FK LFL +GS+ ++ E ++ +GG
Sbjct: 312 LMMVTIGINQP----------HLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGG 361
Query: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIY----TAGYNSGDMVLSFGAVLAVFI 408
L + M +T A ++ SLA++G+P GF SK LI T+ N+ ++L+ ++A F+
Sbjct: 362 LFKPMPFTTTALIIGSLALTGMPFLTGFYSKDLIIEAINTSYTNAWALLLT---LIATFL 418
Query: 409 SAV 411
+AV
Sbjct: 419 TAV 421
>gi|11466906 NADH-ubiquinone oxidoreductase subunit 5 [Podospora anserina]
>gi|128797|sp|P20679|NU5M_PODAN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 >gi|83837|pir||S09133 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Podospora anserina mitochondrion
>gi|1334553|emb|CAA38798.1| (X55026) NADH-ubiquinone
oxidoreductase subunit 5 [Podospora anserina]
Length = 652
Score = 122 bits (303), Expect = 1e-26
Identities = 117/461 (25%), Positives = 209/461 (44%), Gaps = 38/461 (8%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D ++ ++ + I+ +YSI YM P + ++ Y + M +IL+T+N +
Sbjct: 79 DSLTVSMLIPVLIISSLVHIYSISYMSSDPHNQRFFS--YLSLFTFMMIILVTANNYLLM 136
Query: 122 FF-WELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYP 180
F WE + + S++L+++ A F+++G+ ++ L SL + Y
Sbjct: 137 FVGWEGVGVCSYLLVSFWFTRIAANQSSISAFLANRVGDCFLTIGM-FAILWSLGNLDYS 195
Query: 181 NLKSLP----SSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKI 236
+ SL S L++ LI MAKS V H W+P + P+ +S+L+ A
Sbjct: 196 TVFSLAPYINSKVVLIIGICLLIGAMAKSSQVGLHVWLPMAME-GPTPVSALIHAATMVT 254
Query: 237 AVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIW 296
A L+ + ++ L LGA+T +L L + D KK++AY ++ Q+G +
Sbjct: 255 AGVYLLMRSSPLIEYNSTVLLLCLWLGAITTVFSSLIGLFQQDIKKVIAYSTMSQLGMMV 314
Query: 297 LGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET-NLDNLGGLAE 355
+ IG+ +FH +NH+ +K LFL AGSV +A + + GGL
Sbjct: 315 IAIGLS----------SYNVALFHLINHAFYKALLFLGAGSVIHAVADNQDFRKYGGLIN 364
Query: 356 RMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLSFGAVLAVFISAV 411
+ T L+ASL++ P GF SK I + Y SG V + A+F +
Sbjct: 365 FLPLTYSVMLIASLSLVAFPFMTGFYSKDFILESAYGQFSFSGVAVYIIATIGAIFTTLY 424
Query: 412 TL-ASFIKFYTSQFGGES-ERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINE 468
++ ++ F ++ G + Y+ E L + +P +IL+ + G I + + L +
Sbjct: 425 SVKVLYLTFLSNPNGTRAYYNYKPALEGDLFLTLPLIILAIFSIFFGFITKDIFIGLGSN 484
Query: 469 PIGAPISTSLYLN------FDSTAFSPLIFGLL--IVTLAF 501
G SL+++ D+ P++F LL I T++F
Sbjct: 485 FFG---DNSLFIHPTHEIMIDTEFAVPVLFKLLPFIFTISF 522
>pir||T13685 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Scaevola
frutescens chloroplast (fragment)
>gi|847670|gb|AAC37462.1| (L39385) NADH dehydrogenase
[Scaevola frutescens]
Length = 734
Score = 122 bits (302), Expect = 2e-26
Identities = 128/509 (25%), Positives = 224/509 (43%), Gaps = 76/509 (14%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+F+ AF ++ LSIV L F++ ++ VY
Sbjct: 14 LPLPVPMLIALGLILFPKATKSFRRMWAFQSILLLSIVML-FSMNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY F
Sbjct: 73 WSWIINNDFSLEFGYLIDSLTSIMSILITTVGIMVLIYSDKYMSHDHG--YLRFFAYMTF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFW 213
+ + Y GS + + NL S L + ++ F +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFKIFNNLVSTNEVNFLFVTLCAILLFAGPIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + L++L+G +T+ G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMN-LISLIGTITVFFGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GYI L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYIMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGS--------VEYATGET-NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS V Y+ ++ N+ +GGL + + T A LLA+L++ G+PP F SK
Sbjct: 358 LGSGSLIHSMEPIVGYSPKKSQNMVFMGGLKKYIPMTQTAFLLATLSLCGIPPLACFWSK 417
Query: 384 -------WLI-------------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQ 423
WL +TA Y +L+F L + + + I Y+
Sbjct: 418 DEILNDSWLYSPIFAIIPWSTAGFTAFYMCRIYLLTFEGYLNIHFQNYSGKNNIPLYSIY 477
Query: 424 FGGESERYRDVSEVPLSMVVPQLILSSLC 452
G+ ++ +S+ ++ I C
Sbjct: 478 LWGKEKKGSKISKKNFRLITLLKIKRKKC 506
>gb|AAF08150.1| (AF130194) NADH dehydrogenase subunit F [Lonicera japonica]
Length = 721
Score = 122 bits (302), Expect = 2e-26
Identities = 116/463 (25%), Positives = 207/463 (44%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K F+ AF ++ LSIV ++F++ ++ +Y
Sbjct: 4 LPLPVPMLIGLGLLLFPTATKNFRRMWAFQSVLFLSIV-MIFSMNLSIQQINSSSIYQYV 62
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 63 WSWIINNDFSFELGYLIDPLTTIMSILITTVGLMVLVYSDNYMSHDQG--YLRFFAYMSF 120
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
S L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 121 FSSSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWSTRPVAANACQKAFVTNRV-GDFGL 179
Query: 161 FISLGVSYSFLGSLDAMTYPNL-------KSLPSSATLLLYASFLIAFMAKSGIVPFHFW 213
+ + Y GS + + + + +L F +AKS P H W
Sbjct: 180 LLGILGFYWLTGSFEFRDFFEIFNNLIYNNEVHFLFVILCAILFFAGAVAKSAQFPLHVW 239
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M VF + R++ + P + L++L+G +T+ +G
Sbjct: 240 LPDAME-GPTPISALIHAATMVAAGVFLVARLLPLFIIIPYIMN-LISLIGIITVLLGAT 297
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 298 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAFSKALLF 347
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS+ ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 348 LGSGSIIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 407
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A +A+T + Y F G
Sbjct: 408 DEI----LNDSWLYSPIFAIIAWSTAALTAFYMFRIYLLTFEG 446
>gi|11466188 NADH dehydrogenase subunit 5 [Naegleria gruberi]
>gi|10444223|gb|AAG17789.1|AF288092_14 (AF288092) NADH
dehydrogenase subunit 5 [Naegleria gruberi]
Length = 666
Score = 122 bits (302), Expect = 2e-26
Identities = 104/423 (24%), Positives = 188/423 (43%), Gaps = 41/423 (9%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D ++ ++++ + F +YSI YM P + ++ + F M +++ NLV
Sbjct: 79 DSLTVSMLVVVTFISFLVHIYSIEYMREDPHQIRFFSYI-SIFTFFMVILVTAGNLVQLF 137
Query: 122 FFWELMTLSSFILITWDEKDFDPGIKYYIAM--HILTTFPLFISLGVSYSFLGSLDA--- 176
WE + + S++LI + D +AM + + L ++ V + S D
Sbjct: 138 IGWEGVGICSYLLINFWYSRVDANKSSIMAMVTNKVGDICLLVAFAVVFYIYKSFDFSVI 197
Query: 177 ----MTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
M +L S ++ F++ + KS + H W+P + P+ +SSL+ A
Sbjct: 198 FSYHMVNAFYYTLNSDLVFVICFLFILGAVGKSAQLGLHVWLPEAME-GPTPVSSLIHAA 256
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
M +F LIR + P SI ++ G++T +G+ L + D KK++AY + Q
Sbjct: 257 TMVTAGIFLLIRCSFLFDLVP-SIYLIILFFGSLTTFLGSSIGLFQHDIKKIIAYSTCSQ 315
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+GY++L G+ LG IFH +NH+ FK LFLSAG + Y + E + +
Sbjct: 316 LGYMFLSCGL----------LGYTNSIFHLINHAFFKALLFLSAGLIIYCFSHEQDYRKM 365
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSK----WLIYTAGYNSGD----------- 395
G L + ++ L+ SL++ G P +GF SK L + Y D
Sbjct: 366 GSLIFFFPFAYISILIGSLSLIGFPFLSGFYSKEKIVQLFFNLFYLQFDSYGLLNLFFFF 425
Query: 396 MVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLII 455
+F +++ + +V L +F+ F ++ G ++ M++P IL ++
Sbjct: 426 YFFAFVSIICTTLYSVKLLTFVFFV--KYNGFKYNLHNIQYGSFYMLMPLFILIYFSILS 483
Query: 456 GIF 458
G F
Sbjct: 484 GFF 486
>gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus]
Length = 702
Score = 122 bits (302), Expect = 2e-26
Identities = 113/437 (25%), Positives = 196/437 (43%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+G + L
Sbjct: 267 FLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGXMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 326 LGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7596997|gb|AAA32142.2|
(M74159) NADH dehydrogenase subunit 5 [Triticum
aestivum]
Length = 670
Score = 121 bits (301), Expect = 2e-26
Identities = 104/416 (25%), Positives = 185/416 (44%), Gaps = 37/416 (8%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D +++ ++++ + LYSI YM P + + F M +++ N +
Sbjct: 79 DSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPR-FMCYLSIFTFFMLMLVTGDNFLQLF 137
Query: 122 FFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY 179
WE + L+S++LI + D + ++ + F L + + ++ ++D T
Sbjct: 138 LGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALGIFGCFTLFQTVDFSTI 197
Query: 180 PNLKSLPSS----------ATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
S P + A L+ I + KS + H W+P + P+ +S+L+
Sbjct: 198 FACASAPRNEWIFCNMRLNAITLICILLFIGAVGKSAQIGLHTWLPDAME-GPTPVSALI 256
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R +P ++ ++ GA+T + + ++D K+++AY +
Sbjct: 257 HAATMVTAGVFMIARCSPLFEYSPTAL-IVITFAGAMTSFLAATTGILQNDLKRVIAYST 315
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNL 347
Q+GY+ GI +FH +NH+ FK LFLSAGSV +A + E ++
Sbjct: 316 CSQLGYMIFACGIS----------NYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDM 365
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLSFGAV 403
+GGLA T L+ SL++ G P GF SK +I Y SG+ G+V
Sbjct: 366 RKMGGLASSFPLTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSV 425
Query: 404 LAVFISAVTL-ASFIKFY--TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG 456
+F S + F+ F T+ FG + R D P+ M +P ++L+ L +G
Sbjct: 426 SVLFTSYYSFRLLFLTFLVPTNSFGRDRLRCHD---APIPMAIPLILLALGSLFVG 478
>gb|AAD26247.1| (AF117430) NADH dehydrogenase [Sorghum stipoideum]
Length = 702
Score = 121 bits (301), Expect = 2e-26
Identities = 115/438 (26%), Positives = 200/438 (45%), Gaps = 64/438 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKS-- 184
S++LI W + K ++ + F L + + + GSL+ + +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GXFGLLLGILGFFWITGSLEXRDLFKIANNW 207
Query: 185 LPSSA------TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIA 237
+P++ TL + FL A +AKS P H W+P + P+ IS+L+ A M
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGA-VAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAG 265
Query: 238 VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWL 297
+F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY
Sbjct: 266 IFLLARLLPLFISLPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYKKX 324
Query: 298 GIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLD 348
+GIG A +FH + H+ K LFL +GSV ++ N+
Sbjct: 325 ALGIG----------SYQAALFHLITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMV 374
Query: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFI 408
+GGL + + T L +L++ G+PP F SK I + + + F ++A F
Sbjct: 375 LMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFT 430
Query: 409 SAVTLASFIKFYTSQFGG 426
+ +T + Y F G
Sbjct: 431 AGLTAXYMSRIYLLTFDG 448
>gb|AAF08167.1| (AF130211) NADH dehydrogenase subunit F [Phlox drummondii]
Length = 774
Score = 121 bits (301), Expect = 2e-26
Identities = 120/465 (25%), Positives = 212/465 (44%), Gaps = 60/465 (12%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +P+++ + +L + K F+ AF ++ LSI ++ + ++ +L +Y
Sbjct: 16 LQVPVLIGVGLLLFPKATKQFRRMWAFQSILLLSITTILSIILSIQ-QLRNSSIYQYIGS 74
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 75 WIINNDFSLEFGYLIDPLTSIMSILITCVGIMVLIYSDNYMSYDQG--YLRFFAYMSFFS 132
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K +I + F L +
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRTLSANACQKAFITNRV-GDFGLLL 191
Query: 163 SLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFWVP 215
+ Y GS + + NL TL ++ L+ F +AKS P H W+P
Sbjct: 192 GILGFYWITGSFEFRDLFEIFNNLIYNNEVNTLFVFLCALLLFAGAVAKSAQFPLHVWLP 251
Query: 216 STYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYA 274
+ P+ IS+L+ A M +F + R++ + P I + ++L+G +T+ +G A
Sbjct: 252 DAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY-IMHFISLIGIITVFLGATLA 309
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
L + D KK LAY ++ Q+GY+ L +G+G +FH + H+ K LFL
Sbjct: 310 LAQKDIKKGLAYSTMSQLGYMMLALGMG----------SYRTALFHLITHAYSKALLFLG 359
Query: 335 AGS--------VEYATGET-NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWL 385
+GS V Y+ ++ N+ +GGL + + T ++ L+ +L++ G+PP F SK
Sbjct: 360 SGSLIHSMETVVGYSPNKSQNMVLMGGLTKYVPITKMSFLVGTLSLCGIPPLACFWSKDE 419
Query: 386 IYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESER 430
I N + S A++A + +T + Y F G R
Sbjct: 420 I----LNDTWLYSSIFAIIAWSTAGLTAFYMFRIYLLTFEGHFNR 460
>emb|CAB64787.1| (AJ236280) NADH dehydrogenase subunit F [Buxus sempervirens]
Length = 704
Score = 121 bits (301), Expect = 2e-26
Identities = 122/468 (26%), Positives = 215/468 (45%), Gaps = 71/468 (15%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSS-------AFAALASLSIVALVFNLKPVEGKLLGLPVY 60
+P LF + ML G++ F ++ AF ++ LSIV ++F+ ++ G +Y
Sbjct: 11 IPFALFPVPMLIGVALIFFPTATKNVRRMWAFHSVLLLSIV-MIFSFNLSIQQINGSSIY 69
Query: 61 -------------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY 101
ID + I ++++ +G +YS YM G ++ AY
Sbjct: 70 QYVCSWTINNDFSFEFGLLIDSLTSIMLILITTVGILVLIYSDNYMSHDQG--YLRFFAY 127
Query: 102 NAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTT 157
+F +SM ++ +SNL+ FWEL+ + S++LI W + K ++ +
Sbjct: 128 MSFSNISMLGLVTSSNLIQIHIFWELVGVCSYLLIGFWFTRPIAANACQKAFVTNRV-GD 186
Query: 158 FPLFISLGVSYSFLGSLDAMT----YPNL--KSLPSSATLLLYASFL-IAFMAKSGIVPF 210
F L + + Y GS + + NL + +S ++L AS L + +AKS P
Sbjct: 187 FGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNQVNSLFVILCASLLFVGAVAKSAQFPL 246
Query: 211 HFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIM--YTALPTPKSIGYLVALLGAVTL 267
H W+P + P+ IS+L+ A M +F + R++ +T +P I L++L+G +T+
Sbjct: 247 HVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFTVIPY---IMNLISLIGIITI 302
Query: 268 TVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLF 327
+G AL + D K+ LAY ++ Q+GY+ L +G+G A +FH + H+
Sbjct: 303 LLGATLALTQKDIKRSLAYSTMSQLGYMMLALGMG----------SYRAALFHLITHAYS 352
Query: 328 KGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFN 378
K LFL +GS+ ++ N+ +GGL + + T A L +L++ G+PP
Sbjct: 353 KALLFLGSGSIIHSMESIVGYSPDKSQNMILMGGLKKYVPITKTAFFLGTLSLCGIPPLA 412
Query: 379 GFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
F SK I N + A++A + +T + Y F G
Sbjct: 413 CFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRTYLLTFEG 456
>emb|CAB65352.1| (AJ236254) NADH dehydrogenase subunit F [Philadelphus lewisii]
Length = 709
Score = 121 bits (301), Expect = 2e-26
Identities = 115/421 (27%), Positives = 188/421 (44%), Gaps = 38/421 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 47 FSIXLSLQQINSSSIYQYVWSWVINNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDX 106
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 107 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 164
Query: 144 PGI--KYYIAMHILTTFPLFISLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
K ++ I L LG S+ F + +T K+ + L + A
Sbjct: 165 ANACQKAFVTNRIGDFGLLLGILGFYWITGSFEFRDLFEIVTNLIYKNEVNLVFLTICAV 224
Query: 197 FLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKS 254
L A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 225 LLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYI 283
Query: 255 IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGM 314
I L++ +G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 284 IN-LISFIGIITLLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------SY 332
Query: 315 FAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATL 365
+FH + H+ K LFL +GS+ E G N+ +GGL + + T A L
Sbjct: 333 RTALFHLITHAYSKALLFLGSGSIIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFL 392
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG 425
L +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 393 LGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 448
Query: 426 G 426
G
Sbjct: 449 G 449
>gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259571|gb|AAF43872.1|AF166114_84 (AF166114) subunit
4 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 507
Score = 121 bits (301), Expect = 2e-26
Identities = 105/434 (24%), Positives = 190/434 (43%), Gaps = 44/434 (10%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFL----ILITSN 116
IDG S+ +L+ G + A L + P + A + +L+M+ + + +
Sbjct: 82 IDGLSIPLILLTGFITTLAMLGAWPIQKN--------AKLFYFLMLAMYSGQLGVFASQD 133
Query: 117 LVWFVFFWELMTLSSFIL-ITWD-EKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSL 174
L+ F WEL + +IL I W +K K+ + + + F L + G+++
Sbjct: 134 LLLFFLMWELELIPIYILLIIWGGKKRLYAATKFILYTALGSIFILIAAFGMAFYGENMS 193
Query: 175 DAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAME 234
M K P + +L Y FLIA+ K P H W+P T+ A + LLAG +
Sbjct: 194 FDMQILGEKEYPINLEILFYICFLIAYAVKLPAFPVHTWLPDTHGEAHYSTCMLLAGILL 253
Query: 235 KIAVFGLIRIMYTALPTPK-SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMG 293
K+ + LIRI LP +A++G + + L + + + K+ +AY SI MG
Sbjct: 254 KMGGYALIRINMNMLPNAHIYFAPYLAIIGVINIIYAALTSFAQRNIKRKIAYSSISHMG 313
Query: 294 YIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGL 353
++ +GI S +G+ + ++H L SLF AG+ T L+++GG+
Sbjct: 314 FVLIGI-------SSFTDIGLSGAMLQMVSHGLIGASLFFLAGTTYDRTRTLILEDMGGI 366
Query: 354 AERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDM------VLSFGAVLAVF 407
A+ M SLA +P +GF+++ +++ NS +++F + +
Sbjct: 367 AKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFLGFANSNAYSIEFRGIITFLEAIGII 426
Query: 408 ISAVTLASFIK--FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPL 465
++ + L S ++ FY S+ L ++ ++ + I I L+VP+
Sbjct: 427 VTPIYLLSMLRQVFYGSE--------------NLKLLKVNNLIDASAREIFIISCLLVPV 472
Query: 466 INEPIGAPISTSLY 479
I I I T +Y
Sbjct: 473 IGIGIYPRILTQIY 486
>gb|AAF75262.1| (AF257485) NADH dehydrogenase [Goyazia rupicola]
Length = 663
Score = 121 bits (301), Expect = 2e-26
Identities = 117/446 (26%), Positives = 202/446 (45%), Gaps = 56/446 (12%)
Query: 7 ALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL 66
ALP +L + ++ F ++ + + S SI V++ L ID +
Sbjct: 34 ALPSILLLSIVM------IFSINLSIQLINSSSIYQYVWSWTXDNDFSLDFGYLIDLLTS 87
Query: 67 IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWE 125
I +++ +G +YS YM G ++ AY +F SMF ++ +SNL+ FWE
Sbjct: 88 IMSMLITTVGIMVLIYSDNYMAHDQG--YLRLFAYMSFFSTSMFGLVTSSNLIQIYLFWE 145
Query: 126 LMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGS--------- 173
L+ + S+ILI W + K ++ + F L + + Y GS
Sbjct: 146 LVGMCSYILIGFWFTRPLAANACQKAFVTNRV-GDFGLLLGISGFYWITGSFEFRDLFEI 204
Query: 174 LDAMTYPNLKSLPSSATLLLYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
L+ + Y N P + L A+ L A +AKS P H W+P + P+ IS+L+ A
Sbjct: 205 LNDLIYNNEVDFPF---VTLCAALLFAGAVAKSVQFPLHVWLPDAME-GPTPISALIHAA 260
Query: 232 AMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
M +F + R+ ++ A+P I Y ++++G +T+ +G AL + D K+ LAY ++
Sbjct: 261 TMVAAGIFLVARLRPLFIAIPY---IMYSISVVGIITVLLGATLALAQKDIKRGLAYSAM 317
Query: 290 GQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-------- 341
Q+GY+ L +G+G +FH + H+ K LFL +GS+ ++
Sbjct: 318 SQLGYMMLALGMG----------SYRCALFHLITHAYSKALLFLGSGSIIHSMETIVGYS 367
Query: 342 -TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSF 400
N+ +GGL + + T ++ L +L++ G+PP F SK I N +
Sbjct: 368 PDKSQNMGLMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPI 423
Query: 401 GAVLAVFISAVTLASFIKFYTSQFGG 426
A++A + VT + Y F G
Sbjct: 424 FAIIASATAGVTAFYMFRIYLLTFEG 449
>emb|CAC04151.1| (AJ292983) NADH dehydrogenase subunit [Pseudonemacladus
oppositifolius]
Length = 705
Score = 121 bits (301), Expect = 2e-26
Identities = 118/462 (25%), Positives = 211/462 (45%), Gaps = 58/462 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++++ +L + K+ + AF ++ LSI+ ++F+L ++ +Y
Sbjct: 14 LPLPVPILIWVGLLLFPAATKSLRRIWAFQSVLLLSII-MIFSLNLSIQQINSSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINTDFSLEFGYLIDPLTSIMSILITTVGIVVLIYSDNYMFHDRG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI-KYYIAMHILTTFPLF 161
+ L L+TS NL+ FWEL+ + S++LI W + + ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVINRVGDFGLL 190
Query: 162 ISLGVSYSFLGSLDAMTY----PNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFWV 214
+ + Y GS + + NL S L + L+ F +AKS P H W+
Sbjct: 191 LGILGFYWITGSFEFRNFFQIFNNLISNNEVNFLFVTVCTLLLFSGAVAKSAQFPLHVWL 250
Query: 215 PSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLY 273
P + P+ IS+L+ A M +F + R++ L P + L++L+G +T+ +G
Sbjct: 251 PDAME-GPTPISALIHAATMVAAGIFLVARLLPLFLVIPHVMN-LISLIGIITVFLGATL 308
Query: 274 ALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFL 333
AL + D K+ LAY ++ Q+GY+ L +G+G S + +FH + H+ K LFL
Sbjct: 309 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSSR----------SALFHLITHAYSKALLFL 358
Query: 334 SAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKW 384
+GSV ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 359 GSGSVIHSMQIIVGYSPNKSQNMVFMGGLTKHIPITKTAFLLGTLSLCGIPPLACFWSKD 418
Query: 385 LIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 419 EI----LNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEG 456
>gi|9997011 NADH dehydrogenase subunit 5 [Tupaia belangeri]
>gi|9957744|gb|AAG09461.1|AF217811_11 (AF217811) NADH
subunit 5 [Tupaia belangeri]
Length = 603
Score = 121 bits (301), Expect = 2e-26
Identities = 118/454 (25%), Positives = 207/454 (44%), Gaps = 37/454 (8%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + ++Y + FL++M +++
Sbjct: 76 LSLNFKLDYFSVMFIPVALFVTWSIMEFSMWYMHSDPNINRFFLYLLT---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+N+ WE + + SF+LI W D A+ + L +++ F
Sbjct: 133 TANNMFQLFIGWEGVGIMSFLLIGWWYSRSDANTAALQAILYNRIGDIGFILAMAW-FTI 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+L+ + L + TL+ +IA KS H W+PS + P+ +S+LL +
Sbjct: 192 NLNTWDLQQIFMLDNKTTLIPLLGLVIAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF L+R Y L K+I ++ LGA+T + AL ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLVRF-YPLLEHNKTIQTIILCLGAITTLFTAICALTQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICTHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + + +T A L+ SLA++G P GF SK LI + S ++ A+L ++
Sbjct: 360 GGLFKTLPFTSSALLIGSLALTGTPFLTGFYSKDLIIESANTS---YINAWALLMTLVAT 416
Query: 411 VTLASF---IKFYTSQFGGESERYRDVSE--VPLSMVVPQLILSSLCLIIGIFPALVVPL 465
A + I FY ++E PL + +L + S IF ++ +
Sbjct: 417 SLTAVYSTRIIFYALMGQPRFPPTITINENNSPLINSIKRLAMGS------IFAGFIISM 470
Query: 466 INEPIGAP-ISTSLYLNFDSTAFSPLIFGLLIVT 498
P P ++ LY+ TA I G LI T
Sbjct: 471 NITPTATPQMTMPLYMKL--TALVVTITGFLIAT 502
>pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - wheat
mitochondrion
Length = 670
Score = 121 bits (301), Expect = 2e-26
Identities = 104/416 (25%), Positives = 185/416 (44%), Gaps = 37/416 (8%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D +++ ++++ + LYSI YM P + + F M +++ N +
Sbjct: 79 DSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPR-FMCYLSIFTFFMLMLVTGDNFLQLF 137
Query: 122 FFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY 179
WE + L+S++LI + D + ++ + F L + + ++ ++D T
Sbjct: 138 LGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALGIFGCFTLFQTVDFSTI 197
Query: 180 PNLKSLPSS----------ATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL 229
S P + A L+ I + KS + H W+P + P+ +S+L+
Sbjct: 198 FACASAPRNEWIFCNMRLNAITLICILLFIGAVGKSAQIGLHTWLPDAME-GPTPVSALI 256
Query: 230 -AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
A M VF + R +P ++ ++ GA+T + + ++D K+++AY +
Sbjct: 257 HAATMVTAGVFMIARCSPLFEYSPTAL-IVITFAGAMTSFLAATTGILQNDLKRVIAYST 315
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNL 347
Q+GY+ GI +FH +NH+ FK LFLSAGSV +A + E ++
Sbjct: 316 CSQLGYMIFACGIS----------NYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDM 365
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN----SGDMVLSFGAV 403
+GGLA T L+ SL++ G P GF SK +I Y SG+ G+V
Sbjct: 366 RKMGGLASSFPLTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSV 425
Query: 404 LAVFISAVTL-ASFIKFY--TSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG 456
+F S + F+ F T+ FG + R D P+ M +P ++L+ L +G
Sbjct: 426 SVLFTSYYSFRLLFLTFLVPTNSFGRDRLRCHD---APIPMAIPLILLALGSLFVG 478
>gi|11465868 NADH dehydrogenase subunit 4 [Ochromonas danica]
>gi|10505201|gb|AAG18383.1|AF287134_8 (AF287134) NADH
dehydrogenase subunit 4 [Ochromonas danica]
Length = 483
Score = 121 bits (301), Expect = 2e-26
Identities = 107/430 (24%), Positives = 195/430 (44%), Gaps = 36/430 (8%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
+DG S+ F + +L F LY + E + + V ++ LL +F +L +L+ F
Sbjct: 78 LDGISIFFFFLTSLLIFLCVLYVLN--ENNLKQYLVLLISIELILLIIFSVL---DLMLF 132
Query: 121 VFFWELMTLSSFILI-TWDEKDFDPGIKYYIAMHILT-TFPLFISLGVSYSFLGSLDAMT 178
F+E + + FI+I + ++ Y + L + L + + YS +GS + +
Sbjct: 133 YIFFEAILIPMFIIIGVYGSRERKVRAVYLFFFYTLCGSLLLLVGVLYIYSKIGSFN-LE 191
Query: 179 YPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAV 238
Y + LLL+ +F ++F +K + PFH W+P + AP+ S LLAG + K+ V
Sbjct: 192 YLMCYQFTKTEELLLWFAFFLSFASKIPMFPFHIWLPEAHVEAPTIGSVLLAGVLLKLGV 251
Query: 239 FGLIRIMYTALPTPKSIGY--LVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIW 296
+G IR T P S+ Y + L +++ +L ALR++D K+++AY SI M +
Sbjct: 252 YGFIRFSLTLFPY-ASLFYSPFIYFLSLISIIYASLTALRQTDLKRIIAYSSIAHMNLVT 310
Query: 297 LGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAER 356
LGI +G+ I +L+H G +F G + L GGLA
Sbjct: 311 LGI-------FAFNNIGLEGSIIQSLSHGFVAGGMFFLIGILYSRYHSRFLYYYGGLAHT 363
Query: 357 MKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYN--------SGDMVLSFGAVLAVFI 408
M + LL ++A +P + F ++L+ + Y + V+ GA
Sbjct: 364 MPVYSIFFLLLTIANIALPGTSSFTGEFLLLSGIYKVNTITGIIAATSVILSGAYSLWLC 423
Query: 409 SAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINE 468
+ V ++ + YT +F D+S ++ P ++ IG++P++ + I+
Sbjct: 424 NRVLFSNIKEHYTLKF-------IDLSLKEFFIMFPLVV---FIFFIGLYPSIFLSYIHL 473
Query: 469 PIGAPISTSL 478
I + ++ L
Sbjct: 474 SINSLLTLFL 483
>pir||S62707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Platymonas
subcordiformis mitochondrion >gi|633591|emb|CAA87754.1|
(Z47796) NADH dehydrogenase subunit 5 [Platymonas
subcordiformis]
Length = 662
Score = 121 bits (300), Expect = 3e-26
Identities = 101/418 (24%), Positives = 186/418 (44%), Gaps = 32/418 (7%)
Query: 60 YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVW 119
+ D +++ ++++ + LYS+ YM P A + F M +++ +N +
Sbjct: 77 WFDSLTVVMLIVITSISTLVHLYSVSYMADDPHIPRFMAYL-SIFTFFMLMLVTANNFIQ 135
Query: 120 FVFFWELMTLSSFILIT-WDEK--DFDPGIK---------YYIAMHILTTFPLFISLGVS 167
WE + L+S++LI W + IK + +A+ I+ F +F ++ +
Sbjct: 136 MFLGWEGVGLASYLLINFWFTRLQANKSAIKAMLVNRVGDFGLALGIMGIFVVFKTIDFA 195
Query: 168 YSFLGSLDAMTYPNL-KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
F + Y + P A ++ + + KS + H W+P + P+ +S
Sbjct: 196 TVFACAAHVQNYEIIIGGYPCHALTIIGILLFVGAVGKSAQLGLHTWLPDAME-GPTPVS 254
Query: 227 SLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLA 285
+L+ A M VF + R P ++ V ++GA+T L ++D K+++A
Sbjct: 255 ALIHAATMVTAGVFMISRCSPLFEYAPDAL-VTVTIIGAMTTFFAATTGLVQNDLKRVIA 313
Query: 286 YHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGE 344
Y + Q+GY+ L GI G+FH +NH+ FK LFLSAGSV +A + E
Sbjct: 314 YSTCSQLGYMILACGIS----------HYSVGVFHLMNHAFFKALLFLSAGSVIHALSDE 363
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSF---- 400
++ +GG+ + + T L+ SL++ P GF SK LI Y+ + +F
Sbjct: 364 QDMRKMGGMVQLLPLTYTMMLIGSLSLVAFPFLTGFYSKDLILEVAYSKYTINANFAYWL 423
Query: 401 GAVLAVFISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIF 458
GA +F S + + + ++V E L + +P +IL+ + +G F
Sbjct: 424 GATCVLFTSYYSFRVLFLTFLTSTNAYKASVKNVHESSLLLCIPLIILAFGSIFVGYF 481
>pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM2 -
Aquifex aeolicus >gi|2983795|gb|AAC07353.1| (AE000737)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 501
Score = 121 bits (300), Expect = 3e-26
Identities = 114/426 (26%), Positives = 190/426 (43%), Gaps = 31/426 (7%)
Query: 57 LPVYIDGFSLIFMLILGILGFSASLYSIPYME-RHPGKEWVYAVAYNAFLLSMFLIL--- 112
L + +DG SL+ + ++ A ++SI + +H KE+ Y AFLL+ ++
Sbjct: 79 LSLGMDGLSLLMYFLTTLVSLIAVIWSIGDEKIKHRLKEY-----YIAFLLTESFVIGVF 133
Query: 113 ITSNLVWFVFFWELMTLSS-FILITWDEK-DFDPGIKYYIAMHILTTFPLFISLGVSYSF 170
T NL+ F F+EL L F++ W K K+++ + I + F L +S
Sbjct: 134 TTFNLIVFYVFYELTLLPMLFVIGIWGYKLRLYSAYKFFVYIFISSLFLLLGIASISTYH 193
Query: 171 LGSLDAMTYPNLK----SLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNIS 226
+ T+ L+ ++P+ + L+ F IAF K+ IVPFH W+P + AP+ S
Sbjct: 194 YKMNGSFTFEYLELLNLNIPNGFEIFLFLLFFIAFAVKTPIVPFHTWLPDAHGEAPTAGS 253
Query: 227 SLLAGAMEKIAVFGLIRIMYTALPTP--KSIGYLVALLGAVTLTVGTLYALRESDAKKLL 284
+LA + K+ + L+R P + YLVA LG ++ + + + +++ K+ +
Sbjct: 254 VVLAAILLKMGTYALVRFNIGLFPDAALELSPYLVA-LGIYSIIMASWMTISQTNIKRFV 312
Query: 285 AYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGE 344
AY S+ MG++ ++ L G+ A I H L LF+ AG +
Sbjct: 313 AYSSVSHMGFV-------VTAAFLLNMEGLRASIIEMFAHGLTSAGLFMVAGYIYNKLHT 365
Query: 345 TNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVL 404
N +L G + M T + A G+P + F K+L A L+F V
Sbjct: 366 FNFASLRGAIKFMPLFATITAATAFAAMGLPGGSSFWGKFLTILAA-REYSTPLAFLVVF 424
Query: 405 AVFISAVTLASFIKFYTSQFGGESE--RYRDVSEVPLSMVVPQLILSSLCLIIGIFPALV 462
A F SA + F+K ES ++DVS PL V L++ L++G P +
Sbjct: 425 AAFFSAAYVLYFLKTLYLDVREESVLIHFKDVSGYPL---VAFLMIVIPVLLVGFVPFIF 481
Query: 463 VPLINE 468
NE
Sbjct: 482 FAFYNE 487
>gb|AAG28200.1|AF304201_11 (AF304201) NADH5 [Sus scrofa]
>gi|11055668|gb|AAG28213.1|AF304202_11 (AF304202) NADH5
[Sus scrofa]
Length = 606
Score = 121 bits (300), Expect = 3e-26
Identities = 118/447 (26%), Positives = 208/447 (46%), Gaps = 27/447 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + + Y + FL++M +++
Sbjct: 76 LSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLL---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W D A+ + L +++ FL
Sbjct: 133 TANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAW-FLT 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+A + + L + + L+A KS H W+PS + P+ +S+LL +
Sbjct: 192 HSNAWDFQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR Y + T K + + LGA+T L A+ ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-YPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T A ++ SLA++G+P GF SK LI A S ++ ++ + ++
Sbjct: 360 GGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMS--YTNAWALLMTLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + F G+ R V ++ P LI S L+IG IF ++ P
Sbjct: 418 LTAAYSTRIIFFAFLGQP---RFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPP 474
Query: 470 IGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P +T++ L TA I G ++
Sbjct: 475 MTVP-NTTMPLYMKMTALIVTIMGFML 500
>gb|AAF08175.1| (AF130219) NADH dehydrogenase subunit F [Eucnide rupestris]
Length = 742
Score = 121 bits (300), Expect = 3e-26
Identities = 113/427 (26%), Positives = 188/427 (43%), Gaps = 50/427 (11%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID S I +++ +G +YS
Sbjct: 54 FSIDLSIQQINSSSIYQYVWSWVINNDFSLELGYLIDPLSSIMSILITTVGIMVLIYSDN 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 114 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD------------AMTYPNLKSLPSSA 189
K ++ + F L + + Y GS + + N LP A
Sbjct: 172 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEIVTNLISQNEVNFLFLPLCA 230
Query: 190 TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTA 248
LL + +AKS P H W+P + P+ IS+L+ A M +F + R++
Sbjct: 231 VLLFAGA-----VAKSAQFPLHVWLPDAME-GPTPISALIRAATMVAERIFLVARLLPLF 284
Query: 249 LPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSP 308
+ P + L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 285 IVVPYIMN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG------ 337
Query: 309 LGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKW 359
+FH + H+ K LFL +GSV ++ N+ +GGL + +
Sbjct: 338 ----SYRTALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPI 393
Query: 360 TGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF 419
T A LL +L++ G+PP F SK I N + A++A + +T +
Sbjct: 394 TKTAFLLGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRI 449
Query: 420 YTSQFGG 426
Y F G
Sbjct: 450 YLLTFEG 456
>emb|CAB65916.1| (AJ236262) NADH dehydrogenase subunit F [Petalonyx nitidus]
Length = 715
Score = 121 bits (300), Expect = 3e-26
Identities = 113/422 (26%), Positives = 188/422 (43%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 52 FSIDLSIQQINSRSIYQYVWSWVINNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDN 111
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 112 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 169
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY----PNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + NL S L L
Sbjct: 170 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEIVTNLISQNEVNFLFLTVCA 228
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 229 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 287
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
I L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 288 IIN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------S 336
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GSV ++ N+ +GGL + + T A
Sbjct: 337 YRTALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTAF 396
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 397 LLGTLSLCGIPPLACFWSKDEI----INDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTF 452
Query: 425 GG 426
G
Sbjct: 453 EG 454
>emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 479
Score = 120 bits (299), Expect = 4e-26
Identities = 118/467 (25%), Positives = 209/467 (44%), Gaps = 26/467 (5%)
Query: 11 VLFILGML--GGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIF 68
VL I+G L G S A LA+++ + L ++P + D F++ F
Sbjct: 25 VLLIVGELVRKGRDDLLLWASVAIVLLAAVATLMLAGEMRPAYAGMF----ISDRFAVFF 80
Query: 69 MLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMT 128
L+ + S Y E Y V L+ M ++ +L+ ELM
Sbjct: 81 KLVFYLATILTFFLSRKYAEIEGIGRSEYYVLLLFALVGMMIMASAIDLLSIYVGLELMV 140
Query: 129 LSSFILITW---DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGS--LDAMTYPNLK 183
L +++L + + + + +KY I + T L+ + + Y G+ LD M +
Sbjct: 141 LCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLY-GVSLIYGLTGTTQLDRMAEA-VS 198
Query: 184 SLPSSATLLLYASFLIAFMA-KSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLI 242
P LLL F++A + K G VPFH WVP Y+ AP+ I++ ++ A + ++
Sbjct: 199 GGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMSVAPKAAGFAVIL 258
Query: 243 RIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIG 302
R+ L + +VA + T+ +G+ AL + + K+LLAY SI G+ G+ G
Sbjct: 259 RVFLNPLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAGFAIFGVVAG 318
Query: 303 LSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGL 362
+ ++ ++ I+ +N +F + + G +GE +++ G A+ L
Sbjct: 319 --GQDGIASVMLYLLIYTFMNLGIFGAVIMMRNGDF---SGEV-IEDYAGFAKFHPGLAL 372
Query: 363 ATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTS 422
LL +++G+PP GF +K+ + A G + L AV+AV +S V+ +I+
Sbjct: 373 LMLLYLFSLAGIPPTAGFFAKFYVLVALVERGFVAL---AVIAVLLSVVSAYFYIRIVMV 429
Query: 423 QFGGESERYRDVSEVPLSMVVPQLILSSLCLI-IGIFPALVVPLINE 468
+ E ER + + PL V L ++ I IG+FPA + L +
Sbjct: 430 IYMREPERAFEPALTPL--VSATLAFTAAGTIGIGLFPAWFLRLAQQ 474
>prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 700
Score = 120 bits (299), Expect = 4e-26
Identities = 113/441 (25%), Positives = 201/441 (44%), Gaps = 63/441 (14%)
Query: 59 VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNA--------FLLSMFL 110
+ +D + I ++++ + LYS YM + W + AY A F +M +
Sbjct: 74 IRLDRLTAIMLIVVTTVSALVHLYSWGYMAHD--ENWTHHEAYKARFFAYLSFFTFAMLM 131
Query: 111 ILITSNLVWFVFFWELMTLSSFILITWDEKDFDPG---IKYYI---------AMHILTTF 158
++ + NLV F WE + ++S++LI + K IK ++ A+ I+ F
Sbjct: 132 LVTSDNLVQMFFGWEGVGVASYLLIGFYYKKPSANAAAIKAFVVNRVGDFGFALGIMGLF 191
Query: 159 PLFISLGVSYSFLGSLD-AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPST 217
L S+ + F + + A T + + +A LL I M KS + H W+P
Sbjct: 192 FLTDSIDMDVIFASAPELAKTELHFLAWEFNAANLLAVLLFIGAMGKSAQLFLHTWLPDA 251
Query: 218 YKVAPSNISSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYA 274
+ P+ +S+L+ A M VF + R+ ++ P K +V +GAVT
Sbjct: 252 ME-GPTPVSALIHAATMVTAGVFLVCRMSPLFEYAPEAKM---MVVYVGAVTAFFAATVG 307
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
L ++D K+++AY + Q+GY+++ G G+ +FH L H+ FK LFL
Sbjct: 308 LVQNDIKRVIAYSTCSQLGYMFVAAGSGV----------YSVAMFHLLTHAFFKAMLFLG 357
Query: 335 AGSVEYAT-GETNLDNLGGLAERMKWTGLATLLASLAISGV-----------PPFNGFLS 382
AGSV +A E ++ N GGL +++ +T ++ +LAI+GV F G+LS
Sbjct: 358 AGSVIHAMHHEQDMRNYGGLRKKIPFTFAIMMIGTLAITGVGIPFFSIGGVPVGFAGYLS 417
Query: 383 KWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF------YTSQFGGESERYRDVSE 436
K I + + SG+ G V ++A + SF + + + G+ ++ E
Sbjct: 418 KDAIIESAFASGN-----GFAFYVLVAAAGMTSFYSWRLIFLTFYGEARGDHHKHDHAHE 472
Query: 437 VPLSMVVPQLILSSLCLIIGI 457
P M+ P +L+ ++ G+
Sbjct: 473 SPAVMLAPLALLAVGSVLAGM 493
>pir||T12295 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Pearcea
hypocyrtiflora chloroplast (fragment)
>gi|2791791|gb|AAB96931.1| (AF040150) NADH dehydrogenase
[Pearcea hypocyrtiflora]
Length = 683
Score = 120 bits (299), Expect = 4e-26
Identities = 115/444 (25%), Positives = 204/444 (45%), Gaps = 52/444 (11%)
Query: 7 ALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSL 66
ALP +L + ++ F + + + S SI V++ L ID +
Sbjct: 33 ALPSILLLSIVM------IFSTNLSIQLINSSSIYQYVWSWNLDNDFSLEFGYLIDPLTS 86
Query: 67 IFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWE 125
I +++ +G +YS YM G ++ AY +F SMF ++ +SNL+ WE
Sbjct: 87 IMSMLITTVGIMVLVYSDNYMAYDQG--YLRFFAYISFFSTSMFGLVTSSNLIQIYISWE 144
Query: 126 LMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGS--------- 173
L+ + S++LI W + K ++ + F L + + Y GS
Sbjct: 145 LVGMCSYLLIGFWFTRSLAANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFQDLFEI 203
Query: 174 LDAMTYPNLKSLPSSATLLLYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
L+ + Y N +LP + L A+ L A +AKS PFH W+P + P+ IS+L+ A
Sbjct: 204 LNDLIYDNQVNLPF---VTLCAALLFAGAVAKSAQFPFHVWLPDAME-GPTPISALIHAA 259
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
M +F + R++ + P + L++++G +T+ +G AL + D K+ LAY ++ Q
Sbjct: 260 TMVAAGIFLVARLLPLFIAIPYIMN-LISVIGLITVLLGATLALAQKDIKRGLAYSAMSQ 318
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------T 342
+GY+ L +G+G + +FH + H+ K LFL +GS+ ++
Sbjct: 319 LGYMMLALGMG----------SYRSALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPD 368
Query: 343 GETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
N+ +GGL + + T ++ L +L++ G+PP F SK I N + A
Sbjct: 369 KSQNMGLMGGLTKHVPITKISFLFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFA 424
Query: 403 VLAVFISAVTLASFIKFYTSQFGG 426
++A+ + +T I+ Y F G
Sbjct: 425 IIALATAGLTEFYMIRIYLLTFEG 448
>sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|3282577|gb|AAC25003.1| (AF029365) NUOL
[Rhodobacter capsulatus]
Length = 712
Score = 120 bits (299), Expect = 4e-26
Identities = 113/441 (25%), Positives = 201/441 (44%), Gaps = 63/441 (14%)
Query: 59 VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNA--------FLLSMFL 110
+ +D + I ++++ + LYS YM + W + AY A F +M +
Sbjct: 74 IRLDRLTAIMLIVVTTVSALVHLYSWGYMAHD--ENWTHHEAYKARFFAYLSFFTFAMLM 131
Query: 111 ILITSNLVWFVFFWELMTLSSFILITWDEKDFDPG---IKYYI---------AMHILTTF 158
++ + NLV F WE + ++S++LI + K IK ++ A+ I+ F
Sbjct: 132 LVTSDNLVQMFFGWEGVGVASYLLIGFYYKKPSANAAAIKAFVVNRVGDFGFALGIMGLF 191
Query: 159 PLFISLGVSYSFLGSLD-AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPST 217
L S+ + F + + A T + + +A LL I M KS + H W+P
Sbjct: 192 FLTDSIDMDVIFASAPELAKTELHFLAWEFNAANLLAVLLFIGAMGKSAQLFLHTWLPDA 251
Query: 218 YKVAPSNISSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYA 274
+ P+ +S+L+ A M VF + R+ ++ P K +V +GAVT
Sbjct: 252 ME-GPTPVSALIHAATMVTAGVFLVCRMSPLFEYAPEAKM---MVVYVGAVTAFFAATVG 307
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
L ++D K+++AY + Q+GY+++ G G+ +FH L H+ FK LFL
Sbjct: 308 LVQNDIKRVIAYSTCSQLGYMFVAAGSGV----------YSVAMFHLLTHAFFKAMLFLG 357
Query: 335 AGSVEYAT-GETNLDNLGGLAERMKWTGLATLLASLAISGV-----------PPFNGFLS 382
AGSV +A E ++ N GGL +++ +T ++ +LAI+GV F G+LS
Sbjct: 358 AGSVIHAMHHEQDMRNYGGLRKKIPFTFAIMMIGTLAITGVGIPFFSIGGVPVGFAGYLS 417
Query: 383 KWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF------YTSQFGGESERYRDVSE 436
K I + + SG+ G V ++A + SF + + + G+ ++ E
Sbjct: 418 KDAIIESAFASGN-----GFAFYVLVAAAGMTSFYSWRLIFLTFYGEARGDHHKHDHAHE 472
Query: 437 VPLSMVVPQLILSSLCLIIGI 457
P M+ P +L+ ++ G+
Sbjct: 473 SPAVMLAPLALLAVGSVLAGM 493
>gb|AAF08151.1| (AF130195) NADH dehydrogenase subunit F [Symphoricarpos
orbiculatus]
Length = 722
Score = 120 bits (299), Expect = 4e-26
Identities = 118/463 (25%), Positives = 208/463 (44%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K F+ AF ++ LSIV ++F++ ++ +Y
Sbjct: 5 LPLPVPMLIGLGLLLFPTATKNFRRMWAFQSVLFLSIV-MIFSMNLSIQQINSSSIYQYV 63
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 64 WSWIINNDFSFELGYLIDPLTTIMSILITTVGIMVLVYSDNYMSHDQG--YLRFFAYMSF 121
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
S L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 122 FSSSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWSTRPAAANACQKAFVTNRV-GDFGL 180
Query: 161 FISLGVSYSFLGSLDAMT----YPNL---KSLPSSATLLLYASFLIAFMAKSGIVPFHFW 213
+ + Y GS + + NL + +L F +AKS P H W
Sbjct: 181 LLGILGFYWLTGSFEFRDLFEIFNNLIYNNEVHFLFVILCAVLFFAGAVAKSAQFPLHVW 240
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M VF + R++ + P + L++L+G +T+ +G
Sbjct: 241 LPDAME-GPTPISALIHAATMVAAGVFLVARLLPLFIIIPYIMN-LISLIGILTVLLGAT 298
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 299 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAFSKALLF 348
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS+ ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 349 LGSGSIIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 408
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A +A+T + Y F G
Sbjct: 409 DEI----LNDSWLYSPIFAIIAWSTAALTAFYMFRIYLLTFEG 447
>emb|CAC07182.1| (AJ249410) NADH dehydrogenase [Lepidagathis andersoniana]
Length = 642
Score = 120 bits (299), Expect = 4e-26
Identities = 112/437 (25%), Positives = 200/437 (45%), Gaps = 43/437 (9%)
Query: 10 LVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFM 69
L++F+L ++ F + + + S SI V++ L ID + I +
Sbjct: 33 LIIFLLSIV-----MIFSTNLSIEQINSSSIYQYVWSWTLNSDFSLEFGYLIDPLTSIML 87
Query: 70 LILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+++ +G + +YS YM G +A + + F SM ++ +SNL+ FWEL+ +
Sbjct: 88 MLITTVGITVLIYSDNYMAHDQGYLRFFA-SMSFFSTSMLGLVTSSNLIQIYIFWELVGM 146
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHI------LTTFPLFISLGVSYSFLGSLDAMTYP 180
S++LI W + K ++ + L F F G S+ F +
Sbjct: 147 CSYLLIGFWFTRPLAATACQKAFVTNRVGDFGLLLGIFGFFWITG-SFEFRDLFEMFNNL 205
Query: 181 NLKSLPSSATLLLYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ +S + L A L A +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 206 VYNNEVNSLFVTLCAILLFAGAVAKSAQFPLHIWLPDAME-GPTPISALIHAATMVAAGI 264
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F + R++ + P + + ++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 265 FLVARLLPLFIVIPYIMDF-ISLIGIITILLGATLALAQKDIKRGLAYSTMSQLGYMMLA 323
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG ++ +FH + H+ K LFL +GSV ++ N+
Sbjct: 324 LGIGSFRNA----------LFHLITHAYSKALLFLGSGSVIHSMESIVGYSPEKNQNMVL 373
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGLA+ + T ++ LL + ++ G+PP F SK I N + S A++A +
Sbjct: 374 MGGLAKHVPITKISFLLGTFSLCGIPPLACFWSKDQI----LNDSWLYSSSFAIIAWITA 429
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 430 GLTAFYMFRIYLLTFEG 446
>gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea]
>gi|7636158|emb|CAB88780.1| (AJ400848) NADH
dehydrogenase ND5 subunit [Spinacia oleracea]
Length = 742
Score = 120 bits (299), Expect = 4e-26
Identities = 110/436 (25%), Positives = 203/436 (46%), Gaps = 60/436 (13%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF++++ LSIV ++F++K ++ +Y +D + I ++
Sbjct: 41 AFSSISLLSIV-MIFSMKLAIQQINSNSIYQYLWSWTINNDFSLEFGYLMDPLTSIMSML 99
Query: 72 LGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLS 130
+ + +YS YM G ++ AY +F + L L+TS NL+ FWEL+ +
Sbjct: 100 ITTVAILVLIYSDNYMSHDQG--YLRFFAYMSFFNTSMLGLVTSSNLIQIYIFWELVGMC 157
Query: 131 SFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT----YPNL- 182
S++LI W + K ++ + F L + + Y GS + + NL
Sbjct: 158 SYLLIGFWFTRPIAANACQKAFVTNRV-GDFGLLLGILGLYWITGSFEFRDLFEIFNNLI 216
Query: 183 KSLPSSATLLLYASFLI--AFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVF 239
K+ ++ + +FL+ +AKS P H W+P + P+ IS+L+ A M +F
Sbjct: 217 KNNEVNSLFCILCAFLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIF 275
Query: 240 GLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGI 299
+ R++ + P I Y+++ +G +T+ +G AL + D K+ LAY+++ Q+GY+ L +
Sbjct: 276 LVARLLPLFVVIPY-IMYVISFIGIITVLLGATLALAQKDIKRSLAYYTMSQLGYMMLAL 334
Query: 300 GIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG---------ETNLDNL 350
G+G +FH + H+ K LFL++GS+ ++ G N+ +
Sbjct: 335 GMG----------SYRTALFHLITHAYSKALLFLASGSLIHSMGTIVGYSPDKSQNMVLM 384
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + + T + L+ +L++ G+PP F SK I N + A++A F +
Sbjct: 385 GGLTKHVPITKTSFLIGTLSLCGIPPLACFWSKDEI----LNDSWVYSPIFAIIAYFTAG 440
Query: 411 VTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 441 LTAFYMFRIYLLTFEG 456
>gb|AAF22402.1|AF047795_1 (AF047795) NADH dehydrogenase [Phacelia thermalis]
Length = 696
Score = 120 bits (299), Expect = 4e-26
Identities = 113/422 (26%), Positives = 194/422 (45%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 46 FSINLSLQQINSSSIYQYVWSWIINNNFYLEFGYLIDPLTSIMSILITTVGIFVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 106 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIA 200
K ++ + F L + + Y GS + + +L S+ + + + L A
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEVFNNLISTNEVNFFFATLCA 222
Query: 201 FM------AKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
+ AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 223 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 281
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + +AL+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 282 IMNF-IALIGILTVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA------ 334
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLAT 364
+FH + H+ KG LFL +GSV E G N+ +GGL + + T A
Sbjct: 335 ----LFHLITHAYSKGLLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAF 390
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I N + A++A I+ +T + Y F
Sbjct: 391 LLGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIAWAIAGLTAFYMFRIYLLTF 446
Query: 425 GG 426
G
Sbjct: 447 EG 448
>gb|AAF22411.1|AF047804_1 (AF047804) NADH dehydrogenase [Romanzoffia californica]
Length = 696
Score = 120 bits (299), Expect = 4e-26
Identities = 113/422 (26%), Positives = 193/422 (44%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L L +ID + I +++ +G +YS
Sbjct: 46 FSINLSMQQINSSSIYQYVWSWIINNNFSLELGYFIDPLTCIMSILITTVGILVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM +E++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 106 YMSHD--QEYLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRSVA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAM----TYPNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + + NL S L
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLLEVFNNLISTNEVNFLFATLCA 222
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 223 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 281
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + +AL+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 282 IMNF-IALIGIITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA------ 334
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GSV E G N+ +GGL + + T A
Sbjct: 335 ----LFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVFMGGLTKHVPITKTAF 390
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 391 LLGTLSLCGIPPLACFWSKDEI----LNDSWLYSLIFAIIAWATAGLTAFYMFRIYLLTF 446
Query: 425 GG 426
G
Sbjct: 447 EG 448
>gb|AAF08156.1| (AF130200) NADH dehydrogenase subunit F [Osmorhiza claytonii]
Length = 735
Score = 120 bits (299), Expect = 4e-26
Identities = 120/467 (25%), Positives = 212/467 (44%), Gaps = 68/467 (14%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ +L + K+ + AF ++ LSIV L F++ ++ G +Y
Sbjct: 5 LPLPVPMLIGAGLLLFPSATKSLRRMWAFQSVFLLSIVML-FSINLSIQQINGSSIYQYV 63
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 64 WSWIINNDFSLEFGYLIDPLTSIMSILITTIGILVLIYSDNYMSYDQG--YLRFFAYMSF 121
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ +SS++LI W + K ++ + F L
Sbjct: 122 FSTSMLGLVTSSNLIQIYIFWELVGMSSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 180
Query: 161 FISLGVSYSFLGS---------LDAMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVP 209
+ + Y GS L+ + Y N + + +LL+A + AKS P
Sbjct: 181 LLGILGFYWITGSFEFRDLFKILNNLIYNNEVNFLFVTLCAVLLFAGAV----AKSAQFP 236
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLT 268
H W+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +T+
Sbjct: 237 LHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMNF-ISLVGVITIL 294
Query: 269 VGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
G +AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 295 FGATFALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSK 344
Query: 329 GSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNG 379
LFL +GSV ++ N+ +GGL + + T A LL +L++ G+PP
Sbjct: 345 ALLFLGSGSVIHSMETLVGYSPNKSQNMVFMGGLTKHVPLTKTAFLLGTLSLCGIPPLAC 404
Query: 380 FLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
F SK I N + A++A F + +T + Y F G
Sbjct: 405 FWSKDEI----LNDTWLYSPIFAIIAWFTAGLTAFYMFRIYVLTFEG 447
>sp|P15958|NU5C_VICFA NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|100110|pir||S08494 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - fava bean chloroplast
>gi|11555|emb|CAA32909.1| (X14804) ndhF gene product (AA
1-746) [Vicia faba] >gi|12390|emb|CAA35834.1| (X51471)
NADH dehydrogenase [Vicia faba]
>gi|552971|gb|AAA84714.1| (M36832) NADH dehydrogenase
(ndhF) [Vicia faba]
Length = 746
Score = 120 bits (298), Expect = 5e-26
Identities = 110/422 (26%), Positives = 189/422 (44%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + + SI V++ L ID + I +++ +G +YS
Sbjct: 54 FSIDLSIQQIENSSIYQYVWSWTINNDLSLEFGYLIDSLTSIMSILITTVGILVLIYSDS 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ Y +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 114 YMSHDQG--YLRFFTYMSFFNTSMLGLVTSSNLIQVYIFWELVGMCSYLLIGFWFTRPIA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GSL+ + NL L +
Sbjct: 172 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSLEFRDLFQIFKNLIYKNEVNILFVTLCA 230
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
L+ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 231 LLLFCGSVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIP- 288
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
SI +AL+G +T+ +G A+ + D KK LAY ++ Q+GY+ L +G+G
Sbjct: 289 SIMSGIALIGIITVVLGATLAIAQKDIKKNLAYSTMSQLGYMMLALGMG----------S 338
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
A +FH + H+ K LFL +GS+ ++ N+ +GGL + T ++
Sbjct: 339 YRAALFHLITHAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLTKHAPITKMSF 398
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
L+ +L++ G+PPF F SK I N + A++A + +T + Y F
Sbjct: 399 LIGTLSLCGIPPFACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLVF 454
Query: 425 GG 426
G
Sbjct: 455 EG 456
>gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU5C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|66191|pir||DELVN5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - liverwort (Marchantia polymorpha)
chloroplast >gi|11718|emb|CAA28129.1| (X04465) ndh5
[Marchantia polymorpha]
Length = 692
Score = 120 bits (298), Expect = 5e-26
Identities = 118/465 (25%), Positives = 204/465 (43%), Gaps = 63/465 (13%)
Query: 8 LPLVLFILGMLGGL-------SKKAFKVSSAFAALASLSIVALV---FNLKPVEGK---- 53
+PL F+ +L G+ S K F+ S+F ++ L+I L+ F + + G
Sbjct: 11 VPLFPFLASILLGIGLFFFPNSIKKFRRLSSFISIMFLNIAMLLSFHFFWQQITGSPIHR 70
Query: 54 -----------LLGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY- 101
+L + +D + I ++++ + +YS YM G ++ Y
Sbjct: 71 YLWSWVLYKNFVLEIGYLLDPLTSIMLVLVTTVAVMVMIYSDSYMFYDEG--YIKFFCYL 128
Query: 102 NAFLLSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTF 158
+ F SM ++++ NL+ FWEL+ + S++LI W + K ++ I F
Sbjct: 129 SLFTASMLGLVLSPNLIQVYIFWELVGMCSYLLIGFWFTRPSAANACQKAFVTNRI-GDF 187
Query: 159 PLFISLGVSYSFLGSLDAMTYPN--LKSLPSSATLLLYASFLIAFM-----AKSGIVPFH 211
L + + Y GS D + L + L++A+ F+ AKS P H
Sbjct: 188 GLLLGILGFYWITGSFDFQQLSKRFFELLSYNQINLVFATLCALFLFLGPVAKSAQFPLH 247
Query: 212 FWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGT 271
W+P + P+ IS+L+ A A L+ M+ + +++ GA+T +G
Sbjct: 248 IWLPDAME-GPTPISALIHAATMVAAGIFLVARMFPLFQMLPFVMSIISWTGAITALLGA 306
Query: 272 LYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSL 331
AL + D KK LAY ++ Q+GY+ L +GIG AG+FH + H+ K L
Sbjct: 307 TIALAQKDLKKGLAYSTMSQLGYMMLALGIG----------SYKAGLFHLITHAYSKALL 356
Query: 332 FLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
FL +GSV ++ N+ +GGL + M T + L +L++ G+PPF F S
Sbjct: 357 FLGSGSVIHSMEPIVGYHPNKSQNMIFMGGLRQYMPITAITFLFGTLSLCGIPPFACFWS 416
Query: 383 KWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE 427
K I + ++ S +A F + +T + Y F G+
Sbjct: 417 KDEILVNSWLHFPILGS----IAFFTAGLTAFYMFRIYFLTFEGD 457
>sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NADH DEHYDROGENASE 1,
CHAIN 13) (NDH-1, CHAIN 13) >gi|478255|pir||I45456 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Paracoccus denitrificans >gi|150615|gb|AAA25599.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 513
Score = 120 bits (298), Expect = 5e-26
Identities = 103/427 (24%), Positives = 187/427 (43%), Gaps = 30/427 (7%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYA-VAYNAFLLSMFLILITSNLVW 119
+DG S++F+L+ + L + ++ KE++ A + ++ +F L +LV
Sbjct: 81 VDGISVLFVLLTTFMMPLTILSTWQVQDKV--KEYMIAFLVLEGLMIGVFTAL---DLVL 135
Query: 120 FVFFWELMTLSSFILI-TWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMT 178
F F+E + F++I W KD + L + + +++ Y G+ D T
Sbjct: 136 FYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAMYRMAGTTDIPT 195
Query: 179 -----YP--NLKSLPSSAT----LLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISS 227
+P N + L + +LL+ +F +F K + P H W+P + AP+ S
Sbjct: 196 LLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSV 255
Query: 228 LLAGAMEKIAVFGLIRIMYTALPTPKSIGY-LVALLGAVTLTVGTLYALRESDAKKLLAY 286
LLA + K+ +G +R P + V L A+ + +L AL +SD KK++AY
Sbjct: 256 LLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQSDMKKVIAY 315
Query: 287 HSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETN 346
S+ MGY+ +G+ +G+ IF L+H G+LFL G +
Sbjct: 316 SSVAHMGYVTMGVFAA-------NQIGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTRE 368
Query: 347 LDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAV 406
+D GGL RM + ++A G+P +GF+ ++L + V +
Sbjct: 369 IDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVATSGVI 428
Query: 407 FISAVTLASFIKFYTSQFGGES-ERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPL 465
+A L + + Q ES + D++ + +P L ++ LI+G++P LV +
Sbjct: 429 LSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIP---LIAMTLILGVYPRLVTDV 485
Query: 466 INEPIGA 472
+ A
Sbjct: 486 TGPAVAA 492
>gi|5835873 NADH dehydrogenase subunit 5 [Sus scrofa] >gi|7432531|pir||T10982
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
pig mitochondrion >gi|4958962|gb|AAD34195.1|AF034253_11
(AF034253) NADH dehydrogenase subunit 5 [Sus scrofa]
Length = 606
Score = 120 bits (298), Expect = 5e-26
Identities = 119/447 (26%), Positives = 207/447 (45%), Gaps = 27/447 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + + Y V FL++M +++
Sbjct: 76 LSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLVL---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W D A+ + L +++ FL
Sbjct: 133 TANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAW-FLT 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+A + L + + L+A KS H W+PS + P+ +S+LL +
Sbjct: 192 HSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR Y + T K + + LGA+T L A+ ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-YPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T A ++ SLA++G+P GF SK LI A S ++ ++ + ++
Sbjct: 360 GGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMS--YTNAWALLMTLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + F G+ R V ++ P LI S L+IG IF ++ P
Sbjct: 418 LTAAYSTRIIFFAFLGKP---RFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPP 474
Query: 470 IGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P +T++ L TA I G ++
Sbjct: 475 MTVP-NTTMPLYMKMTALIVTIMGFML 500
>emb|CAB65232.1| (AJ236261) NADH dehydrogenase subunit F [Mentzelia lindleyi]
Length = 712
Score = 120 bits (298), Expect = 5e-26
Identities = 105/379 (27%), Positives = 174/379 (45%), Gaps = 36/379 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID S I +++ +G +YS
Sbjct: 48 FSIDLSIEQINSSSIYQYVWSWVINNDFSLELGYLIDPLSSIMSILITTVGIMVLIYSDN 107
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 108 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 165
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY----PNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + NL S + L
Sbjct: 166 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFKIVTNLISQNEVNFIFLTVCS 224
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 225 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVVPY 283
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
I L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 284 IIN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------S 332
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GSV ++ N+ +GGL + + T A
Sbjct: 333 YRTALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPEKSQNMVLMGGLTKHVPITKTAF 392
Query: 365 LLASLAISGVPPFNGFLSK 383
LL +L++ G+PP F SK
Sbjct: 393 LLGTLSLCGIPPLACFWSK 411
>gb|AAG26159.1| (AF123811) NADH dehydrogenase subunit F [Saururus cernuus]
Length = 429
Score = 120 bits (298), Expect = 5e-26
Identities = 113/416 (27%), Positives = 190/416 (45%), Gaps = 54/416 (12%)
Query: 8 LPLVLFI-LGML-GGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
LP+ + + LG+L + K + AF +++ LSIV +VF+ ++ G +Y
Sbjct: 6 LPVTMLVGLGLLFAPTATKNLRRMWAFTSVSLLSIV-MVFSADISIQQIKGSSIYQYLWS 64
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 WTINNDFSLEFGYLIDSLTSIMPILITTVGIMVLIYSDNYMSHDQG--YLRFFAYMSFFN 122
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + L
Sbjct: 123 ASMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLG 182
Query: 163 SLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYASFL-IAFMAKSGIVPFHFWVPS 216
LG+ S+ F + T + +S +L AS L + +AKS P H W+P
Sbjct: 183 ILGLYWITGSFEFRDLFEIFTSLVHNNAINSFFAILCASLLFLGAVAKSAQFPLHVWLPD 242
Query: 217 TYKVAPSNISSLLAGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALR 276
+ P+ IS+L+ A A L+ ++ T I L++L+G +T+ +G AL
Sbjct: 243 AME-GPTPISALIHAATMVAAGIFLVARLFPLFITLPYIMNLISLIGVITVLLGATLALA 301
Query: 277 ESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAG 336
+ D K+ LAY ++ Q+GYI L +GIG A +FH + H+ K LFL +G
Sbjct: 302 QRDIKRSLAYSTMSQLGYIMLALGIG----------SYRAALFHLITHAYSKALLFLGSG 351
Query: 337 SVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
S+ ++ N+ +GGL + + T L +L++ G+PP F SK
Sbjct: 352 SIIHSMEPVVGYSPEKSQNMVLMGGLTKYVPITKTTFLFGTLSLCGIPPLACFWSK 407
>emb|CAB39558.1| (AJ225079) putative NADH dehydrogenase [Stylidium calcaratum]
Length = 743
Score = 120 bits (297), Expect = 7e-26
Identities = 113/424 (26%), Positives = 197/424 (45%), Gaps = 64/424 (15%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV +VF++ ++ G VY
Sbjct: 2 LPLPVPMLIGLGFLLFPTATKSLRRVWAFQSVLLLSIV-MVFSINLSLHQISGSSVYQYL 60
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I ++++ +G +YS YM G ++ AY F
Sbjct: 61 WSWVITNDFSLEFGYWIDPLTSIMLILITTVGILVLIYSDNYMSHDDG--YLRFFAYMGF 118
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 119 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 177
Query: 161 FISLGVSYSFLGS---------LDAMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVP 209
+ + Y GS L+ + Y N + S +LL+A AKS P
Sbjct: 178 LLGILGFYWITGSFEFRDLFQILNNLIYTNEVNFLFVSLCAILLFAGAA----AKSAQFP 233
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLT 268
H W+P + P+ IS+L+ A M +F + R++ + P + L++L+G +T+
Sbjct: 234 LHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFMVIPHIMN-LISLIGIITVF 291
Query: 269 VGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
+G AL + D K+ LAY ++ Q+GY+ L +GIG + +FH + H+ K
Sbjct: 292 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGIG----------SYRSALFHLITHAYSK 341
Query: 329 GSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNG 379
LFL +GSV ++ N+ +GGL + + T + LL +L++ G+PP
Sbjct: 342 ALLFLGSGSVIHSMETIVGYSPNKSQNMVLMGGLTKHVPITQTSFLLGTLSLCGIPPLAC 401
Query: 380 FLSK 383
F SK
Sbjct: 402 FWSK 405
>gb|AAD26240.1| (AF117423) NADH dehydrogenase [Sorghum bulbosum]
Length = 702
Score = 120 bits (297), Expect = 7e-26
Identities = 112/437 (25%), Positives = 194/437 (43%), Gaps = 62/437 (14%)
Query: 31 AFAALASLSIVALVFNLKPVEGKLLGLPVY-------------------IDGFSLIFMLI 71
AF ++ LSI A+VF+L ++ G +Y +D + I +++
Sbjct: 33 AFPSILLLSI-AMVFSLHLSIQQINGSSIYQYLWSWTINNDFSLEFGYLVDPLTSIMLIL 91
Query: 72 LGILGFSASLYSIPYMERHPG--KEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTL 129
+ +G +YS YM G + +VY +N SM ++ +SNL+ FFWEL+ +
Sbjct: 92 ITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNT---SMLGLVTSSNLIQIYFFWELVGM 148
Query: 130 SSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFISLGVSYSFLGSLD-------AMTY 179
S++LI W + K ++ + F L + + + GSL+ A +
Sbjct: 149 CSYLLIGFWFTRPIAASACQKAFVTNRV-GDFGLLLGILGFFWITGSLEFRDLFKIANNW 207
Query: 180 PNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAV 238
+ S T L + +AKS P H W+P + P+ IS+L+ A M +
Sbjct: 208 IPNNGINSLLTTLCAFLLFLGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGI 266
Query: 239 FGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLG 298
F L R++ + P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L
Sbjct: 267 FLLARLLPLFIALPLIMSF-ISLVGTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLA 325
Query: 299 IGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDN 349
+GIG FH + H+ K FL +GSV ++ N+
Sbjct: 326 LGIG----------SYQXAXFHLITHAYSKXLXFLGSGSVIHSMEPLVGYSPDKSQNMVL 375
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
+GGL + + T L +L++ G+PP F SK I + + + F ++A F +
Sbjct: 376 MGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDEILSNSW----LYSPFFGIIASFTA 431
Query: 410 AVTLASFIKFYTSQFGG 426
+T + Y F G
Sbjct: 432 GLTAFYMFRIYLLTFDG 448
>pir||T12151 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Paradrymonia
aurea chloroplast (fragment) >gi|2431901|gb|AAB71152.1|
(AF013705) NADH dehydrogenase [Paradrymonia aurea]
Length = 684
Score = 119 bits (296), Expect = 9e-26
Identities = 118/442 (26%), Positives = 199/442 (44%), Gaps = 50/442 (11%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI +++ P L ID + I +++ +G +YS
Sbjct: 47 FSINLSIQHINSSSIYQYIWSWTPDNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDN 106
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S+ILI W +
Sbjct: 107 YMAYDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYILIGFWFTRPLA 164
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA---------MTYPNLKSLPSSATLL 192
K Y+ + F L + + Y GS + + Y N + + L
Sbjct: 165 ANACQKAYVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEIFNDLIYNNEVNF---SFLT 220
Query: 193 LYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALP 250
L A+ L A +AKS P H W+P + P+ IS+L+ A M +F + R++ +
Sbjct: 221 LCAALLFAGAVAKSARFPLHVWLPDAME-GPTPISALIHAATMVAEGIFLVARLLPLFIA 279
Query: 251 TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLG 310
P + + ++++G +T+ +G AL + D K+ LAY +I Q+GY+ L +G+G S G
Sbjct: 280 IPYIMNF-ISVIGIITVLLGATLALAQKDIKRGLAYSAISQLGYMMLALGMG----SYRG 334
Query: 311 ALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTG 361
L FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 335 VL------FHFITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITK 388
Query: 362 LATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYT 421
+ L +L++ G+PP F SK I N + A++A + +T I+ Y
Sbjct: 389 IIFLFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMIRIYL 444
Query: 422 SQFGG----ESERYRDVSEVPL 439
F G + YR P+
Sbjct: 445 LTFEGHLNIHFQNYRGKQNSPI 466
>gb|AAF08864.1|AF194832_1 (AF194832) NADH dehydrogenase [Alluaudia humbertii]
Length = 714
Score = 119 bits (296), Expect = 9e-26
Identities = 120/471 (25%), Positives = 213/471 (44%), Gaps = 68/471 (14%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +PL++ + +L + F+ AF+++ LSIV ++F++K ++ +Y
Sbjct: 16 LPVPLLIGVGLLLFPTTTNNFRRIWAFSSILLLSIV-MIFSMKLSIQQINSNSIYQYVWA 74
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 75 WTINNDFSFEFGYLIDPLTSIMSMLITTVGILGLIYSDNYMSHDRG--YLRFFAYMSFFN 132
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L +
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFGLLL 191
Query: 163 SLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYA---SFLI--AFMAKSGIVPFHFW 213
+ Y GS + + NL + ++ ++ +FL+ +AKS P H W
Sbjct: 192 GILGIYWITGSFEFRDLFEIFNNLNLINNNEIHFIFCILCTFLLFAGAVAKSAQFPLHVW 251
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYL---VALLGAVTLTV 269
+P + P+ IS+L+ A M +F + R+ LP I Y+ ++ +G +T+ +
Sbjct: 252 LPDAME-GPTPISALIHAATMVAAGIFLVARL----LPLFVVIPYIMNGISFIGIITVLL 306
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +GIG A +FH + H+ K
Sbjct: 307 GATLALAQKDIKRSLAYSTMSQLGYMMLALGIG----------SYRAALFHLITHAYSKA 356
Query: 330 SLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV ++ N+ +GGL + + T A L+ +L++ G+PP F
Sbjct: 357 LLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACF 416
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERY 431
SK I N + + A++A + +T + Y F G Y
Sbjct: 417 WSKDEI----LNDSWLYSTIFAIIAYLTAGLTAFYMFRIYLLTFEGHLNIY 463
>gb|AAG02011.1| (AF124557) NADH dehydrogenase [Globularia cordifolia]
Length = 700
Score = 119 bits (296), Expect = 9e-26
Identities = 112/431 (25%), Positives = 194/431 (44%), Gaps = 48/431 (11%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 46 FSINLSIQQINSNSIYQYVWSWTLNNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM+ G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 106 YMDHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA---------MTYPNLKSLPSSA--T 190
K ++ + F L + + Y GS + + Y N + P + T
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGVYWITGSFEFRDLFEIFNNLIYNNQVNFPFATLCT 222
Query: 191 LLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA-MEKIAVFGLIRIMYTAL 249
LL+A + AKS P H W+P + P+ IS+L+ A M VF + R++ +
Sbjct: 223 ALLFAGAV----AKSAQFPLHVWLPDAME-GPTPISALIHXATMVAXGVFLVARLLPLFI 277
Query: 250 PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPL 309
P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 278 VIPYIMNF-ISLIGLITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG------- 329
Query: 310 GALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWT 360
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 330 ---SYRSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPIT 386
Query: 361 GLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY 420
+ LL +L++ G+PP F SK I + + A++A + +T + Y
Sbjct: 387 KTSFLLGTLSLCGIPPLACFWSKDEILKDSW----LYSPIFAIIAWVTAGLTAFYMFRIY 442
Query: 421 TSQFGGESERY 431
F G Y
Sbjct: 443 LLTFEGHLNAY 453
>emb|CAC17799.1| (AJ400895) NADH dehydrogenase subunit F [Platycrater arguta]
Length = 703
Score = 119 bits (296), Expect = 9e-26
Identities = 111/421 (26%), Positives = 190/421 (44%), Gaps = 38/421 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 51 FSIDLSIQQINSSSIYQYVWSWVINNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDN 110
Query: 86 YMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F SMF ++ +SNL+ FWEL+ L S++LI W +
Sbjct: 111 YMSHDQG--YLRFFAYMSFFSTSMFGLVTSSNLIQIYIFWELVGLCSYLLIGFWFTRPLA 168
Query: 144 PGI--KYYIAMHILTTFPLFISLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
K ++ + L LG S+ F + +T K+ + L + +
Sbjct: 169 ANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIVTNLIYKNEVNFLFLTVCSV 228
Query: 197 FLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKS 254
L A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 229 LLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYI 287
Query: 255 IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGM 314
+ L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 288 LN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------SY 336
Query: 315 FAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATL 365
+FH + H+ K LFL +GSV ++ N+ +GGL + + T + L
Sbjct: 337 RTALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFL 396
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG 425
L +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 397 LGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 452
Query: 426 G 426
G
Sbjct: 453 G 453
>pir||T13043 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Dampiera
diversifolia chloroplast >gi|845322|gb|AAC37742.1|
(L39386) NADH dehydrogenase [Dampiera diversifolia]
Length = 744
Score = 119 bits (295), Expect = 1e-25
Identities = 123/483 (25%), Positives = 218/483 (44%), Gaps = 64/483 (13%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSMNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLSYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATL-LLYASF--LIAF---MAKSGIVPFHFW 213
+ + Y GS + + SL S+ + L+ +F L+ F +AKS P H W
Sbjct: 190 LLGILGIYWITGSFEFRDLFQIFNSLISNNEVNFLFVTFCALLLFTGAIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +TL +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLIARLLPLFIVIPHIMNF-ISLIGIITLFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMVLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYSPQKSQNMGLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG----ESERYRDVSEVPL 439
I N + A++A + +T + Y F G + Y PL
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMCRIYLLSFEGHLNAHFQNYSGKKNTPL 473
Query: 440 SMV 442
S +
Sbjct: 474 SSI 476
>pir||T13249 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
robinsonii chloroplast (fragment)
>gi|1654254|gb|AAB17750.1| (U55334) Gossypium robinsonii
NADH dehydrogenase
Length = 688
Score = 119 bits (295), Expect = 1e-25
Identities = 124/484 (25%), Positives = 215/484 (43%), Gaps = 74/484 (15%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +P+++ +L + K + AF + LSIV ++F+L ++ G +Y
Sbjct: 4 LXIPILIGXXLLLFPTATKNLRRMWAFPNILLLSIV-MIFSLDLSIQQINGSSIYQYVWS 62
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ +G +YS YM G +A + F
Sbjct: 63 WTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYM-SLFNT 121
Query: 107 SMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFIS 163
SM ++ +SNL+ FWEL+ + S++LI W + K ++ I F L +
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRI-GDFGLLLG 180
Query: 164 LGVSYSFLGSLDAMT----YPNL--KSLPSSATLLLYASFLIA-FMAKSGIVPFHFWVPS 216
+ Y GSL+ + NL + + L AS L A +AKS P H W+P
Sbjct: 181 ILGFYWITGSLEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPD 240
Query: 217 TYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYAL 275
+ P+ IS+L+ A M +F + R++ + P + L++L+G +T+ +G AL
Sbjct: 241 AME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN-LISLIGIITVLLGATLAL 298
Query: 276 RESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSA 335
+ D K+ LAY ++ Q+GY+ L +G+G A +FH + H+ K LFL++
Sbjct: 299 AQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRAALFHLITHAYSKALLFLAS 348
Query: 336 GSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK--- 383
GS+ ++ N+ +GGL + + T +A L+ +L++ G+PP F SK
Sbjct: 349 GSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSKDEI 408
Query: 384 ----WLI-------------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
WL TA Y +L+F L V ++ FY+ + G
Sbjct: 409 LSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNVHFQKYSVKKSSSFYSIKLWG 468
Query: 427 ESER 430
+ E+
Sbjct: 469 KEEQ 472
>emb|CAA05241.1| (AJ002189) NADH dehydrogenase subunit 5 [Sus scrofa]
Length = 606
Score = 119 bits (295), Expect = 1e-25
Identities = 118/447 (26%), Positives = 207/447 (45%), Gaps = 27/447 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + + Y + FL++M +++
Sbjct: 76 LSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLL---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W D A+ + L +++ FL
Sbjct: 133 TANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAW-FLT 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+A + L + + L+A KS H W+PS + P+ +S+LL +
Sbjct: 192 HSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR Y + T K + + LGA+T L A+ ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-YPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T A ++ SLA++G+P GF SK LI A S ++ ++ + ++
Sbjct: 360 GGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMS--YTNAWALLMTLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + F G+ R V ++ P LI S L+IG IF ++ P
Sbjct: 418 LTAAYSTRIIFFAFLGKP---RFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPP 474
Query: 470 IGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P +T++ L TA I G ++
Sbjct: 475 MTVP-NTTMPLYMKMTALIVTIMGFML 500
>gb|AAF22401.1|AF047794_1 (AF047794) NADH dehydrogenase [Nama pusillum]
Length = 696
Score = 119 bits (295), Expect = 1e-25
Identities = 118/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K F+ AF ++ LSIV ++F++ ++ +Y
Sbjct: 6 LPLTVPMLIGMGLLLFPTATKNFRRVWAFQSILLLSIV-MIFSINLSIQQINSSSIYQYV 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 WSWIINNEFSLEFGYLIDPLTSIMSILISTVGIMVLIYSDNYMSHDQG--YLRFFAYMSF 122
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 123 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFARPAAANACQKAFVTNRV-GDFGL 181
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFW 213
+ + Y GS + + +L S+ + + + L A + AKS P H W
Sbjct: 182 LLGILGFYWITGSFEFRDLFEVFNNLISTNKVNFFFATLCAVLLFAGAVAKSAQFPLHVW 241
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R + + P + + +AL+G +T+ +G
Sbjct: 242 LPDAME-GPTPISALIHAATMVAAGIFLVARFLPLFIVIPYIMNF-IALIGIITVFLGAT 299
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K LF
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKALLF 349
Query: 333 LSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV E G N+ +GGL + + T + LL +L++SG+PP F SK
Sbjct: 350 LGSGSVIHSMETVVGYSPDKSQNMGLMGGLTKHVPITKTSFLLGTLSLSGIPPLACFWSK 409
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 410 DEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTFEG 448
>emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocleista grandiflora]
Length = 732
Score = 119 bits (295), Expect = 1e-25
Identities = 117/460 (25%), Positives = 206/460 (44%), Gaps = 50/460 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I ++++ +G + YS
Sbjct: 54 FSTNLSIQQINSNSIYQYVWSWLITNDFSLELGYLIDPLTSIMLILITTVGITVLFYSDN 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM + ++ Y +F + L L+TS NL+ FWEL+ +SS++LI W +
Sbjct: 114 YMAHD--QSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTRPLA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY----PNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + NL S L L
Sbjct: 172 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFEDLFEIVNNLISNNEVNPLFLTLCA 230
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 231 VLLFAGSVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIP- 288
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
SI L++L+ +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 289 SIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA------ 342
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYAT---------GETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GS+ ++ N+ +GGL + + T +
Sbjct: 343 ----LFHLITHAYSKALLFLGSGSIIHSMERLVGYSPYKSQNMVLMGGLGKHIPITKTSF 398
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
L +L++SG+PP F SK I N + A++A F + +T + Y F
Sbjct: 399 FLGTLSLSGIPPLACFWSKDEI----LNDSWLYSPTFALIAWFTAGLTAFYMFRIYFLTF 454
Query: 425 GG----ESERYRDVSEVPLSMV------VPQLILSSLCLI 454
G + Y ++P + V ++I + CL+
Sbjct: 455 EGHLNVHFQNYSGKQKIPFYSISLWGKGVSKIISKNFCLL 494
>gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M; NuoM
[Halobacterium sp. NRC-1]
Length = 519
Score = 119 bits (295), Expect = 1e-25
Identities = 109/431 (25%), Positives = 194/431 (44%), Gaps = 32/431 (7%)
Query: 59 VYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLV 118
V IDG S+ +++ +L A + ++ + + + A LL +F L V
Sbjct: 80 VGIDGISMPLVVLSTVLTTLAITSAWTPIDERQSQFYALMLLMEASLLGVFTAL--DFFV 137
Query: 119 WFVFFWELMTLSSFILI-TWD-EKDFDPGIKYYIAMHI--LTTFPLFISL--GVSYSFLG 172
WFVF WE + + + LI W + IK+++ ++ L F F++L G+ + +
Sbjct: 138 WFVF-WEFVLVPMYFLIGIWGGPRRKYAAIKFFVYTNVASLLMFIGFMALVFGLDVTTMD 196
Query: 173 ------SLDAMTYPNLKSLPSSA--TLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSN 224
++ A + L + T+ +A F I F K VP H W+P + AP+
Sbjct: 197 MPAIAQAIHAGQFGTTYGLGAETLKTVAFFAMF-IGFAVKVPTVPLHTWLPDAHVQAPTP 255
Query: 225 ISSLLAGAMEKIAVFGLIRIMYTALP-TPKSIGYLVALLGAVTLTVGTLYALRESDAKKL 283
S +LAG + K+ + L+R +T +P + +A L +++ G + AL + D K++
Sbjct: 256 ASVMLAGVLLKMGTYALLRFNFTMMPGIAQQYAVPIAALAVLSVIYGAMLALAQRDLKRI 315
Query: 284 LAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATG 343
+AY S+ MGY+ LG+ G+ F + H L G +F+ G V Y T
Sbjct: 316 VAYSSVSSMGYVILGL-------VAYNYYGVGGATFQMVAHGLISGLMFMCVG-VIYNTA 367
Query: 344 ETNL-DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGA 402
T + +L G+A++M T + A+ G+P GF + I+ G+ +
Sbjct: 368 HTRMVGDLSGIADKMPVTAAVFIAAAFGYMGLPLMAGFAGELFIFLGGFGADFAHAQLFT 427
Query: 403 VLAVFISAVTLASFIKFYTSQ--FGG-ESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
LA+F V +A ++ F + FG +E D+ L VP + L L ++ G P
Sbjct: 428 ALAMF-GIVIVAGYLLFAMQRVLFGPFAAETDYDIVPAALHDTVPIVALLLLVIVAGTVP 486
Query: 460 ALVVPLINEPI 470
+ +I + +
Sbjct: 487 NVFYGMIQDAV 497
>gi|5835412 NADH dehydrogenase subunit 5 [Ceratotherium simum]
>gi|3122536|sp|O03205|NU5M_CERSI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 5 >gi|2052162|emb|CAA69016.1|
(Y07726) NADH-ubiquinone oxidoreductase subunit V
[Ceratotherium simum]
Length = 606
Score = 118 bits (294), Expect = 1e-25
Identities = 116/456 (25%), Positives = 210/456 (45%), Gaps = 28/456 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
L L +D FS+IF+ + + +S +S+ YM P + FL++M +++
Sbjct: 76 LSLSFKLDYFSMIFVPVALFVTWSIMEFSMWYMHSDPHITQFFKYLL-MFLITMMILVTA 134
Query: 115 SNLVWFVFFWELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI+W D + I + + +S+ FL
Sbjct: 135 NNLFQLFIGWEGVGIMSFLLISWWYGRTDANTAALQAILYNRIGDIGFIMSMAW---FLF 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+ ++ + SL + T L L+A KS H W+PS + P+ +S+LL +
Sbjct: 192 NTNSWDLQQIFSLNYNHTDLPLMGLLLAATGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR + + K++ LGA+T + AL ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-HPLMENNKTVQTFTLCLGAITTLFTAICALTQNDIKKIIAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEY-ATGETNLDNL 350
+G + + IGI + H H+ FK LF+ +GS+ + E ++ +
Sbjct: 310 LGLMIVTIGINQP----------YLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T + ++ SLA++G+P GF SK LI S ++ ++ + ++
Sbjct: 360 GGLFKAMPFTSTSLIIGSLALTGMPFLTGFYSKDLIIETANTS--YTNAWALLITLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + G+ R ++ + ++ P L+ S L+IG IF + P
Sbjct: 418 LTAAYSTRMIFFTLLGQP---RSLTLITINENNPLLMNSIKRLLIGSIFAGFFISNNIYP 474
Query: 470 IGAPIST-SLYLNFDSTAFSPLIFGLLIVTLAFGTY 504
P +T YL + A + L F ++ + L+ TY
Sbjct: 475 TTIPKTTMPHYLKLTALAVTILGF-MMALELSLATY 509
>pir||T12220 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Globularia
cordifolia chloroplast (fragment)
>gi|2605757|gb|AAB84410.1| (AF027282) NADH dehydrogenase
[Globularia cordifolia]
Length = 733
Score = 118 bits (294), Expect = 1e-25
Identities = 112/430 (26%), Positives = 194/430 (45%), Gaps = 46/430 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 51 FSINLSIQQINSNSIYQYVWSWTLNNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDN 110
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM+ G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 111 YMDHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLA 168
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA---------MTYPNLKSLPSSATLL 192
K ++ + F L + + Y GS + + Y N + P +
Sbjct: 169 ANACQKAFVTNRV-GDFGLLLGILGVYWITGSFEFRDLFEIFNNLIYNNEVNFPFAT--- 224
Query: 193 LYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALP 250
L A+ L A +AKS P H W+P + P+ IS+L+ A M VF + R++ +
Sbjct: 225 LCAALLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGVFLVARLLPLFIV 283
Query: 251 TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLG 310
P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 284 IPYIMNF-ISLIGLITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-------- 334
Query: 311 ALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTG 361
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 335 --SYRSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITK 392
Query: 362 LATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYT 421
+ LL +L++ G+PP F SK I + + A++A + +T + Y
Sbjct: 393 TSFLLGTLSLCGIPPLACFWSKDEILKDSW----LYSPIFAIIAWVTAGLTAFYMFRIYL 448
Query: 422 SQFGGESERY 431
F G Y
Sbjct: 449 LTFEGHLNVY 458
>pir||T12160 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Hydrophyllum
virginianum chloroplast (fragment)
>gi|2738894|gb|AAB94563.1| (AF019646) NADH dehydrogenase
subunit F [Hydrophyllum virginianum]
Length = 696
Score = 118 bits (294), Expect = 1e-25
Identities = 121/466 (25%), Positives = 210/466 (44%), Gaps = 67/466 (14%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSS-------AFAALASLSIVALVFNLKPVEGKLLGLPVY 60
+PL+ I+ ML G+ F ++ AF ++ LSIV ++F++ ++ +Y
Sbjct: 3 IPLLPLIVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQINSSSIY 61
Query: 61 -------------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY 101
ID + I +++ +G +YS YM G ++ AY
Sbjct: 62 QYVWSWIINNNFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQG--YLRFFAY 119
Query: 102 NAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTT 157
+F + L L+TS NL+ FWEL+ + S++LI W + K +I +
Sbjct: 120 MSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFITNRV-GD 178
Query: 158 FPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPF 210
F L + + Y GS + + +L S+ + + + L A + AKS P
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFEVFNNLISTNEVNFFFATLCAILLFGGAVAKSAQFPL 238
Query: 211 HFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV 269
H W+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +
Sbjct: 239 HVWLPDAME-GPTPISALIHAATMVXXXIFLVARLLPLFIVIPYIMNF-IALIGIITVFL 296
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K
Sbjct: 297 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKA 346
Query: 330 SLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV E G N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 347 LLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACF 406
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A + +T + Y F G
Sbjct: 407 WSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTFEG 448
>pir||T12124 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Saintpaulia
rupicola chloroplast (fragment)
>gi|2895106|gb|AAC03340.1| (AF012842) NADH dehydrogenase
[Saintpaulia rupicola]
Length = 684
Score = 118 bits (294), Expect = 1e-25
Identities = 111/426 (26%), Positives = 196/426 (45%), Gaps = 48/426 (11%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI +++ L +ID + I +++ +G +YS
Sbjct: 46 FSINLSIQLINSSSIYQYIWSWTLDNDFCLEFGYFIDPLTSIMSILITTVGIMVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F +SM ++ +SNL+ FWEL+ + S++LI W + F
Sbjct: 106 YMAYDQG--YLRFFAYMSFFSISMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPFA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT----YPNL---KSLPSSATLLLY 194
K ++ + F L + + Y GS + + NL + SS L
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNSSFVTLCA 222
Query: 195 ASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
A +AKS P H W+P + P+ IS+L+ A M +F + R+ LP K
Sbjct: 223 ALLFAGAVAKSAHFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARL----LPLFK 277
Query: 254 SIGY---LVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLG 310
I + L++++G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 278 VIPFIMNLISVVGIITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-------- 329
Query: 311 ALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET----------NLDNLGGLAERMKWT 360
+ +FH + H+ K LFL +GS+ ++ ET N+ +GGL + + T
Sbjct: 330 --SYRSALFHLITHAYSKALLFLGSGSIIHSM-ETLVGYSPDKSHNMVIMGGLTKHVPIT 386
Query: 361 GLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFY 420
++ L +L++ G+PP F SK I N + A++A + +T ++ Y
Sbjct: 387 KISFLFGTLSLCGIPPLACFWSKDEI----INDSWLYSPIFAIIAWSTAGLTAFYMLRIY 442
Query: 421 TSQFGG 426
F G
Sbjct: 443 LLTFEG 448
>gb|AAD52739.1|AF123681_1 (AF123681) NADH dehydrogenase [Globularia nudicaulis]
Length = 700
Score = 118 bits (294), Expect = 1e-25
Identities = 112/430 (26%), Positives = 194/430 (45%), Gaps = 46/430 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 46 FSINLSIQQINSNSIYQYVWSWTLNNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM+ G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 106 YMDHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA---------MTYPNLKSLPSSATLL 192
K ++ + F L + + Y GS + + Y N + P +
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGVYWITGSFEFRDLFEIFNNLIYNNEVNFPFAT--- 219
Query: 193 LYASFLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALP 250
L A+ L A +AKS P H W+P + P+ IS+L+ A M VF + R++ +
Sbjct: 220 LCAALLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGVFLVARLLPLFIV 278
Query: 251 TPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLG 310
P + + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 279 IPYIMNF-ISLIGLITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-------- 329
Query: 311 ALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTG 361
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 330 --SYRSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITK 387
Query: 362 LATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYT 421
+ LL +L++ G+PP F SK I + + A++A + +T + Y
Sbjct: 388 TSFLLGTLSLCGIPPLACFWSKDEILKDSW----LYSPIFAIIAWVTAGLTAFYMFRIYL 443
Query: 422 SQFGGESERY 431
F G Y
Sbjct: 444 LTFEGHLNVY 453
>gb|AAF08137.1| (AF130181) NADH dehydrogenase subunit F [Nymphoides indica]
Length = 745
Score = 118 bits (294), Expect = 1e-25
Identities = 111/427 (25%), Positives = 195/427 (44%), Gaps = 40/427 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 54 FSINLSIQQINSSSIYQYVWSWIINNDFSLEFGYLIDPLTSIMSILITTVGILVLIYSDN 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NLV FWEL+ + S++LI W +
Sbjct: 114 YMSHDDG--YLRFFAYMSFFSTSMLGLVTSSNLVQIYIFWELVGMCSYLLIGFWFTRPAA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + + NL S L +
Sbjct: 172 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFQIFNNLISTNQVNFLFITLCA 230
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 231 VLLFAGAIAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPH 289
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + ++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 290 IMNF-ISLIGILTVFLGATLALAQQDIKRGLAYSTMSQLGYMMLALGMGSYRNA------ 342
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GSV ++ N+ +GGL + + T ++
Sbjct: 343 ----LFHLITHAYSKALLFLGSGSVIHSMETVVGYSPNKSQNMVFMGGLTKYVPITKISF 398
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I + +V A++A F + +T + Y F
Sbjct: 399 LLGTLSLCGIPPLACFWSKDEILNDTWLYSPIV----AIIAWFTAGLTAFYMFRIYFLTF 454
Query: 425 GGESERY 431
G Y
Sbjct: 455 EGHLNVY 461
>gb|AAF22387.1|AF047780_1 (AF047780) NADH dehydrogenase [Phacelia congesta]
Length = 696
Score = 118 bits (294), Expect = 1e-25
Identities = 112/422 (26%), Positives = 193/422 (45%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 46 FSINLSLQQINSSSIYQYVWSWIINNNFYLEFGYLIDPLTSIMSILITTVGIFVLIYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 106 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIA 200
K ++ + F L + + Y GS + + +L S+ + + + L A
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEVFNNLISTNEVNFFFATLCA 222
Query: 201 FM------AKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
+ AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 223 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 281
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + +AL+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 282 IMNF-IALIGILTVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA------ 334
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLAT 364
+FH + H+ KG LFL +GSV E G N+ +GGL + + T A
Sbjct: 335 ----LFHLITHAYSKGLLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAF 390
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 391 LLGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTF 446
Query: 425 GG 426
G
Sbjct: 447 EG 448
>gb|AAF22407.1|AF047800_1 (AF047800) NADH dehydrogenase [Ehretia ovalifolia]
Length = 696
Score = 118 bits (294), Expect = 1e-25
Identities = 118/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K + AF ++ LSIV ++F++ ++ +Y
Sbjct: 6 LPLTVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQINSSSIYQNV 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQG--YLRFFAYMSF 122
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 123 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFARPVAANACQKAFVTNRV-GDFGL 181
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFW 213
+ + Y GS + + +L S+ + L+ + L A + AKS P H W
Sbjct: 182 LLGILGFYWITGSFEFRDLFEVFNNLISTNEVNLFFATLCAILLFAGAVAKSAQFPLHVW 241
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +G
Sbjct: 242 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFLGAT 299
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K LF
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKALLF 349
Query: 333 LSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV E G N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 350 LGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 409
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I + +V A++A + T + Y F G
Sbjct: 410 DEILNDSWLYSPIV----AIIAWATAGFTAFYMFRIYLLTFEG 448
>emb|CAB64928.1| (AJ236252) NADH dehydrogenase subunit F [Decumaria barbara]
Length = 712
Score = 118 bits (294), Expect = 1e-25
Identities = 111/421 (26%), Positives = 190/421 (44%), Gaps = 38/421 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 54 FSIDLSIQQINSSSICQYVWSWVINNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDN 113
Query: 86 YMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F SMF ++ +SNL+ FWEL+ + S++LI W +
Sbjct: 114 YMSHDQG--YLRFFAYMSFFSTSMFGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
K ++ + L LG S+ F + +T K+ + L + A
Sbjct: 172 ANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIVTNLIYKNEVNLLFLTVCAV 231
Query: 197 FLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKS 254
L A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 232 LLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYI 290
Query: 255 IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGM 314
+ L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 291 LN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMXLALGMG----------SY 339
Query: 315 FAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATL 365
+FH + H+ K LFL +GSV ++ N+ +GGL + + T + L
Sbjct: 340 RTALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFL 399
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG 425
L +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 400 LGTLSLCGIPPLACFWSKDEI----LNDTWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 455
Query: 426 G 426
G
Sbjct: 456 G 456
>emb|CAB94828.1| (AJ236250) NADH dehydrogenase subunit F [Anthocleista grandiflora]
Length = 691
Score = 118 bits (294), Expect = 1e-25
Identities = 117/460 (25%), Positives = 206/460 (44%), Gaps = 50/460 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I ++++ +G + YS
Sbjct: 43 FSTNLSIQQINSNSIYQYVWSWLITNDFSLELGYLIDPLTSIMLILITTVGITVLFYSDN 102
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM + ++ Y +F + L L+TS NL+ FWEL+ +SS++LI W +
Sbjct: 103 YMAHD--QSYLKFFTYMSFFSTSMLGLVTSANLIQIYIFWELVGMSSYLLIGFWFTRPLA 160
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTY----PNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + NL S L L
Sbjct: 161 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFEDLFEIVNNLISNNEVNPLFLTLCA 219
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 220 VLLFAGSVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIP- 277
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
SI L++L+ +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G ++
Sbjct: 278 SIMNLISLIAIITVLLGATLALAQKDIKRGLAYSTMXQLGYMMLALGMGSYRNA------ 331
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYAT---------GETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GS+ ++ N+ +GGL + + T +
Sbjct: 332 ----LFHLITHAYSKALLFLGSGSIIHSMERLVGYSPYKSQNMVLMGGLGKHIPITKTSF 387
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
L +L++SG+PP F SK I N + A++A F + +T + Y F
Sbjct: 388 FLGTLSLSGIPPLACFWSKDEI----LNDSWLYSPTFALIAWFTAGLTAFYMFRIYFLTF 443
Query: 425 GG----ESERYRDVSEVPLSMV------VPQLILSSLCLI 454
G + Y ++P + V ++I + CL+
Sbjct: 444 EGHLNVHFQNYSGKQKIPFYSISLWGKGVSKIISKNFCLL 483
>gb|AAD52736.1|AF123678_1 (AF123678) NADH dehydrogenase [Bartsia alpina]
Length = 675
Score = 118 bits (294), Expect = 1e-25
Identities = 119/459 (25%), Positives = 208/459 (44%), Gaps = 56/459 (12%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALV---FNLKPVEGKLLGLPV--- 59
L +P+++ + +L + K F+ AF ++ LSIV + +++ + + + V
Sbjct: 8 LPVPMLIGVGFLLFPTATKYFRRMWAFISILLLSIVMIFSTNLSIQQINSRSIDQYVWSW 67
Query: 60 ------------YIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLS 107
+ID + I +L++ +G +YS YM G ++ AY +F +
Sbjct: 68 TLDNAFSFEFGYFIDPLTSIMLLLISTVGIMVLIYSDNYMAHDQG--YLRFFAYMSFFST 125
Query: 108 MFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFIS 163
L L+TS NL+ FWEL+ + S++LI W + K ++ I L
Sbjct: 126 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRIGDFGLLLGI 185
Query: 164 LGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYASFLIA-FMAKSGIVPFHFWVPST 217
LG S+ F + + +S + L A+ + A +AKS P H W+P
Sbjct: 186 LGFYWITGSFEFRDLFEIFNHLIYNHEVNSPFVTLCAALVFAGAVAKSAQFPLHVWLPDA 245
Query: 218 YKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALR 276
+ P+ IS+L+ A M VF + R++ + P + + ++L+G +T+ +G A+
Sbjct: 246 ME-GPTPISALIHAATMVAAGVFLVARLLPLFIVIPYIMNF-ISLIGIITVLLGATLAVA 303
Query: 277 ESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAG 336
+ D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LFL +G
Sbjct: 304 QKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLFLGSG 353
Query: 337 SV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIY 387
SV E G NL +GGL + + T + LL +L++ G+PP F SK I
Sbjct: 354 SVIHSMETVVGYSPDKSQNLVFMGGLRKYVPITKTSFLLGTLSLCGIPPLACFWSKDEI- 412
Query: 388 TAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
N + A+LA + +T + Y F G
Sbjct: 413 ---LNDSWLYSPIFAILACVTAGLTAFYMFRIYLLTFEG 448
>pir||T12670 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Caryopteris
incana chloroplast (fragment) >gi|1695939|gb|AAB37137.1|
(U78681) NADH dehydrogenase [Caryopteris incana]
Length = 688
Score = 118 bits (293), Expect = 2e-25
Identities = 107/423 (25%), Positives = 188/423 (44%), Gaps = 42/423 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L +ID + I ++++ +G +YS
Sbjct: 35 FSTNLSIQQINSSSIYQYVWSWTXDNDFSLEFGYFIDPLTSIMLMLITTVGIMVLIYSDN 94
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILITW--DEKDF 142
YM G ++ +Y +F + L L+TS NL+ FWEL+ + S++LI +
Sbjct: 95 YMAHDQG--YLRFFSYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPPA 152
Query: 143 DPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDA---------MTYPNLKSLPSSATLLL 193
+ + + F L + + Y GS + + Y N + SS L
Sbjct: 153 ANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFQIVNNLIYNN--EVNSSFVTLC 210
Query: 194 YASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTP 252
A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 211 AALLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIP 269
Query: 253 KSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGAL 312
+ + ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 270 YIMNF-ISLIGVITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---------- 318
Query: 313 GMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLA 363
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T +
Sbjct: 319 SFQSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTS 378
Query: 364 TLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQ 423
LL +L++ G+PP F SK I N + A++A + +T + Y
Sbjct: 379 FLLGTLSLCGIPPLACFWSKDEI----LNESWLYSPIFAIIAWATAGLTAFYMFRIYLLT 434
Query: 424 FGG 426
F G
Sbjct: 435 FEG 437
>pir||T13561 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Plectranthus
barbatus chloroplast (fragment)
>gi|1695969|gb|AAB37152.1| (U78698) NADH dehydrogenase
[Plectranthus barbatus]
Length = 686
Score = 118 bits (293), Expect = 2e-25
Identities = 113/424 (26%), Positives = 189/424 (43%), Gaps = 44/424 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G YS
Sbjct: 35 FSINLSIQQINSSSIHQYVWSWTLDNDFSLEFGCLIDPLTSIMSMLITTVGIMVLFYSDN 94
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FFWEL+ + S++LI W +
Sbjct: 95 YMAHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPSA 152
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGS---------LDAMTYPNLKSLPSSATLL 192
K ++ I F L + + Y GS L+ + Y N + S L
Sbjct: 153 ANACQKAFVTNRI-GDFGLLLGILGFYWITGSFEFQDLFEILNNLIYNN--EVNFSFVTL 209
Query: 193 LYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPT 251
A +AKS P H W+P + P+ IS+L+ A M +F + R++ +
Sbjct: 210 CAALLFTGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVXXXIFLVARLLPLFMLI 268
Query: 252 PKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGA 311
P + L++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 269 PYIMN-LISLIGIITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG--------- 318
Query: 312 LGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGL 362
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 319 -SYRSALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPNKSQNMVFMGGLTKHVPITKT 377
Query: 363 ATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTS 422
+ LL +L++ G+PP F SK I N + A++A + +T + Y
Sbjct: 378 SFLLGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLL 433
Query: 423 QFGG 426
F G
Sbjct: 434 TFEG 437
>sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|7431996|pir||D70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 2 [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|2827568|emb|CAA16623.1| (AL021646) nuoN
[Mycobacterium tuberculosis]
Length = 531
Score = 118 bits (293), Expect = 2e-25
Identities = 93/344 (27%), Positives = 174/344 (50%), Gaps = 38/344 (11%)
Query: 143 DPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSAT-----LLLYASF 197
+ +KY++ + F L+ GV+ + G+ +T P ++ ++ T L A
Sbjct: 202 EAAMKYFLLGAFSSAFFLY---GVALLY-GATGTLTLPGIRDALAARTDDSMALAGVALL 257
Query: 198 LIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFG-LIRIMYTALPTP---- 252
+ + K G VPFH W+P Y+ AP+ I+ +A A K+A FG L+R++Y ALP
Sbjct: 258 AVGLLFKVGAVPFHSWIPDVYQGAPTPITGFMAAA-TKVAAFGALLRVVYVALPPLHDQW 316
Query: 253 KSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGAL 312
+ + + +A+L T+TVGT+ A+ +++ K++LAY S+ +G+I G+ D+P
Sbjct: 317 RPVLWAIAIL---TMTVGTVTAVNQTNVKRMLAYSSVAHVGFILTGV----IADNP---A 366
Query: 313 GMFAGIFHALNHSLFKGSLFLSAGSVEYATG-----ETNLDNLGGLAERMKWTGLATLLA 367
G+ A +F+ + +S F G V A G + +L + GL +R G+ +
Sbjct: 367 GLSATLFYLVAYSFSTMGAFAIVGLVRGADGSAGSEDADLSHWAGLGQRSPIVGVMLSMF 426
Query: 368 SLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGE 427
LA +G+P +GF+SK+ ++ A ++G + L ++ V S V +++ S F
Sbjct: 427 LLAFAGIPLTSGFVSKFAVFRAAASAGAVPL---VIVGVISSGVAAYFYVRVIVSMF--F 481
Query: 428 SERYRDVSEVPLSMVVPQ---LILSSLCLIIGIFPALVVPLINE 468
+E D V V+ + + + + +++GI P V+ L ++
Sbjct: 482 TEESGDTPHVAAPGVLSKAAIAVCTVVTVVLGIAPQPVLDLADQ 525
>gb|AAF08123.1| (AF130161) NADH dehydrogenase subunit F [Nyctanthes arbor-tristis]
Length = 740
Score = 118 bits (293), Expect = 2e-25
Identities = 109/422 (25%), Positives = 189/422 (43%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S SI V++ L ID + I +++ +G +YS
Sbjct: 54 FSINLSIQQINSSSIYQYVWSWTINNDFSLEFGYLIDPLTSIMSMLITTVGTMVLIYSDN 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NLV FWEL+ + S++LI W +
Sbjct: 114 YMAHDQG--YLRFFAYMSFFSTSMLGLVTSSNLVQIYIFWELVGMCSYLLIGFWFTRPLA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNL-------KSLPSSATLLLY 194
K ++ + F L + + Y GS + + + SS L
Sbjct: 172 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEILNKLVSNNEVHSSFVTLCA 230
Query: 195 ASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
A +AKS P H W+P + P+ IS+L+ A +M +F + R++ + P
Sbjct: 231 ALLFTGAVAKSAQFPLHVWLPDAME-GPTPISALIHAASMVAAGIFLVARLLPLFIVIPY 289
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + ++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 290 IMNF-ISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------S 338
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLAT 364
+ +FH + H+ K LFL +GS+ E G N+ +GGL + + T ++
Sbjct: 339 YRSALFHLITHAYCKALLFLGSGSIIHSMETVVGYSPDKSQNMVLMGGLTKHIPITKISF 398
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
LL +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 399 LLGTLSLCGIPPLACFWSKDEI----INDSWLYSPIFAIIASTTAGLTAFYMFRIYILTF 454
Query: 425 GG 426
G
Sbjct: 455 EG 456
>gb|AAF08173.1| (AF130217) NADH dehydrogenase subunit F [Carpenteria californica]
Length = 743
Score = 118 bits (293), Expect = 2e-25
Identities = 113/421 (26%), Positives = 187/421 (43%), Gaps = 38/421 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I ++++ +G +YS
Sbjct: 54 FSIDLSIQQINSSSIYQYVWSWVINNDFSLELGYLIDPLTSIMLILITTVGIMVLIYSDS 113
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 114 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLA 171
Query: 144 PGI--KYYIAMHILTTFPLFISLGV-----SYSFLGSLDAMTYPNLKSLPSSATLLLYAS 196
K ++ I L LG S+ F +T + + L + A
Sbjct: 172 ANACQKAFVTNRIGDLGLLLGILGFYWITGSFEFRDLFQIVTNLIYNNEVNLVFLTICAV 231
Query: 197 FLIA-FMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKS 254
L A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 232 LLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYI 290
Query: 255 IGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGM 314
+ L++ +G +TL +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 291 LN-LISFIGIITLLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------SY 339
Query: 315 FAGIFHALNHSLFKGSLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATL 365
+ +FH + H+ K LFL +GSV E G N+ +GGL + + T A
Sbjct: 340 RSALFHLITHAYPKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFF 399
Query: 366 LASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFG 425
L +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 400 LGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 455
Query: 426 G 426
G
Sbjct: 456 G 456
>gb|AAF08882.1|AF194851_1 (AF194851) NADH dehydrogenase [Montia parvifolia]
Length = 695
Score = 118 bits (293), Expect = 2e-25
Identities = 114/425 (26%), Positives = 188/425 (43%), Gaps = 46/425 (10%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + +F + S SI V++ L ID + I +++ + YS
Sbjct: 34 FSLKFSFQQINSNSIYQYVWSWTINNDFSLEFGYLIDPLTSIMSMLITTVAILVLFYSDN 93
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 94 YMSHDQG--YLIFFAYMSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWVTRPIA 151
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIA 200
K ++ + L LG+ Y GS + + +L + + + S L
Sbjct: 152 ANACQKAFVTNRVGDFCLLLGILGI-YWITGSFEFQDLFEIFNNLIKNNEIHFFFSILCT 210
Query: 201 FMAKSGIV------PFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
F+ SG V P H W+P + P+ IS+L+ A M +F + R+ LP
Sbjct: 211 FLXFSGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARL----LPLFV 265
Query: 254 SIGYL---VALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLG 310
I Y+ ++L+G +TL +G AL + D K+ LAY ++ Q+GY+ L +GIG
Sbjct: 266 VIPYIMNGISLIGIITLLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIG-------- 317
Query: 311 ALGMFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTG 361
A +FH + H+ K LFL +GSV ++ N+ +GGL + + T
Sbjct: 318 --SYRAALFHLITHAYSKALLFLGSGSVIHSMEAIVGYSPEKSQNMVLMGGLTKHVPITK 375
Query: 362 LATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYT 421
A L+ +L++ G+PP F SK I N + A++A + +T + Y
Sbjct: 376 TAFLIGTLSLCGIPPLACFWSKDEI----LNDTWLYSPIFAIIAYLTAGLTAFYMFRIYL 431
Query: 422 SQFGG 426
F G
Sbjct: 432 LTFEG 436
>pir||T13686 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Streptocarpus holstii chloroplast (fragment)
>gi|703432|gb|AAA84649.1| (L36415) NADH dehydrogenase
subunit [Streptocarpus holstii]
Length = 703
Score = 118 bits (293), Expect = 2e-25
Identities = 107/422 (25%), Positives = 191/422 (44%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F ++ + + S S+ +++ L +ID + I +++ +G LYS
Sbjct: 46 FSINLSIQLINSSSMYQYIWSWTLDNDFCLEFGYFIDPLTSIMSMLITTVGIMVLLYSDN 105
Query: 86 YMERHPGKEWVYAVAYNAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F +SM ++ +SNL+ FWEL+ + S++LI W + F
Sbjct: 106 YMAYDQG--YLRFFAYMSFFSISMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPFA 163
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT----YPNL---KSLPSSATLLLY 194
K ++ + F L + + Y GS + + NL + S L
Sbjct: 164 ANACQKAFVTNRV-GDFGLLLGIFGFYWITGSFEFRDLFEIFNNLIYNNEVNSPFVTLCA 222
Query: 195 ASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
A +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 223 ALLFSGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 281
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ + ++L+G T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 282 IMNF-ISLIGITTVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------S 330
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
+ +FH + H+ K LFL +GSV ++ N+ +GGL + + T ++
Sbjct: 331 YRSALFHLITHAYSKALLFLGSGSVIHSMETLVGYSPDKSQNMVIMGGLTKHVPITKISF 390
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
L +L++ G+PP F SK I N + A++A +A+T + Y F
Sbjct: 391 LFGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIAWSTAALTAFYMFRIYLLTF 446
Query: 425 GG 426
G
Sbjct: 447 EG 448
>gb|AAF22417.1|AF047810_1 (AF047810) NADH dehydrogenase [Phacelia argentea]
Length = 696
Score = 118 bits (293), Expect = 2e-25
Identities = 124/466 (26%), Positives = 209/466 (44%), Gaps = 69/466 (14%)
Query: 9 PLVLFILGMLGGLSKKAFKVSS-------AFAALASLSIVALVFNLKPVEGKLLGLPVY- 60
PL+L + ML G+ F ++ AF ++ LSIV ++F++ ++ +Y
Sbjct: 4 PLLLLTVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQIKSSSIYQ 62
Query: 61 ------------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYN 102
ID + I +++ +G +YS YM G ++ AY
Sbjct: 63 YVWSWIINNNFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDQG--YLRFFAYM 120
Query: 103 AFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTF 158
+F + L L+TS NL+ FWEL+ + S++LI W + K ++ + F
Sbjct: 121 SFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKXFVTNRV-GDF 179
Query: 159 PLFISLGVSYSFLGSLDAM----TYPNLKSLPSS----ATLLLYASFLIAFMAKSGIVPF 210
L + + Y GS + + NL S ATL F+ A +AKS P
Sbjct: 180 GLLLGILGFYWITGSFEFRDLFEVFNNLISTHEVNFFFATLCAVLLFVGA-VAKSAQFPL 238
Query: 211 HFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV 269
H W+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +
Sbjct: 239 HVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFL 296
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K
Sbjct: 297 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKA 346
Query: 330 SLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV E G N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 347 LLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACF 406
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A + +T + Y F G
Sbjct: 407 WSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTFEG 448
>emb|CAB64931.1| (AJ236265) NADH dehydrogenase subunit F [Davidia involucrata]
Length = 715
Score = 118 bits (293), Expect = 2e-25
Identities = 109/422 (25%), Positives = 189/422 (43%), Gaps = 40/422 (9%)
Query: 26 FKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIFMLILGILGFSASLYSIP 85
F + + + S SI V++ L L ID + I +++ +G +YS
Sbjct: 51 FSIDLSIQQINSNSIYQYVWSWVITNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDN 110
Query: 86 YMERHPGKEWVYAVAYNAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFD 143
YM G ++ AY +F + L L+TS NL+ FWEL+ + S++LI W +
Sbjct: 111 YMSHDQG--YLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVA 168
Query: 144 PGI--KYYIAMHILTTFPLFISLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYASF 197
K ++ + F L + + Y GS + + NL S L +
Sbjct: 169 ANACQKAFVTNRV-GDFGLLLGILGFYWITGSFEFRDLFEIFHNLISKNEVNFLFVTLCA 227
Query: 198 LIAF---MAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPK 253
++ F +AKS P H W+P + P+ IS+L+ A M +F + R++ + P
Sbjct: 228 VLLFAGAVAKSAQFPLHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPY 286
Query: 254 SIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALG 313
+ L++L+G +T+ +G AL + D K+ LAY ++ Q+GY+ L +G+G
Sbjct: 287 IMN-LISLIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG----------S 335
Query: 314 MFAGIFHALNHSLFKGSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLAT 364
+FH + H+ K LFL +GS+ ++ N+ +GGL + + T A
Sbjct: 336 YRTALFHLITHAYSKALLFLGSGSIIHSMETLVGYSPDKNQNMVLMGGLTKHVPITKTAF 395
Query: 365 LLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQF 424
L+ +L++ G+PP F SK I N + A++A + +T + Y F
Sbjct: 396 LVGTLSLCGIPPLACFWSKDEI----LNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTF 451
Query: 425 GG 426
G
Sbjct: 452 EG 453
>gb|AAG28226.1|AF304203_11 (AF304203) NADH5 [Sus scrofa]
Length = 606
Score = 118 bits (293), Expect = 2e-25
Identities = 117/447 (26%), Positives = 207/447 (46%), Gaps = 27/447 (6%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHP--GKEWVYAVAYNAFLLSMFLIL 112
L L +D FS++F+ + + +S +S+ YM P + + Y + FL++M +++
Sbjct: 76 LSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLL---FLITMMILV 132
Query: 113 ITSNLVWFVFFWELMTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLG 172
+NL WE + + SF+LI W D A+ + L +++ FL
Sbjct: 133 TANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAW-FLT 191
Query: 173 SLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGA 232
+A + L + + ++A KS H W+PS + P+ +S+LL +
Sbjct: 192 HSNAWDLQQIFMLNNECPNMPLIGLILAAAGKSAQFGLHPWLPSAME-GPTPVSALLHSS 250
Query: 233 MEKIA-VFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
+A VF LIR Y + T K + + LGA+T L A+ ++D KK++A+ + Q
Sbjct: 251 TMVVAGVFLLIRF-YPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQ 309
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNLDNL 350
+G + + IGI H H+ FK LF+ +GS+ ++ E ++ +
Sbjct: 310 LGLMMVTIGINQP----------HLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKM 359
Query: 351 GGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISA 410
GGL + M +T A ++ SLA++G+P GF SK LI A S ++ ++ + ++
Sbjct: 360 GGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMS--YTNAWALLMTLIATS 417
Query: 411 VTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIG-IFPALVVPLINEP 469
+T A + F G+ R V ++ P LI S L+IG IF ++ P
Sbjct: 418 LTAAYSTRIIFFAFLGKP---RFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPP 474
Query: 470 IGAPISTSLYLNFDSTAFSPLIFGLLI 496
+ P +T++ L TA I G ++
Sbjct: 475 MTVP-NTTMPLYMKMTALIVTIMGFML 500
>pir||T13706 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Syneilesis
palmata chloroplast >gi|847672|gb|AAC37778.1| (L39432)
NADH dehydrogenase [Syneilesis palmata]
Length = 741
Score = 118 bits (293), Expect = 2e-25
Identities = 142/580 (24%), Positives = 253/580 (43%), Gaps = 87/580 (15%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSMNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ I F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGICSYLLIGFWFTRPVAAKACQKAFVTNRI-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNL--KSLPSSATLLLYASFLIA-FMAKSGIVPFHFW 213
+ + Y GS + + NL + + + L A L A +AKS P H W
Sbjct: 190 LLGILGFYWVTGSFEFRDLFQIFNNLIYNNEVNFVFVTLCAVLLFAGAVAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R+M + P + + ++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFIVIPHIMNF-ISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T + LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYCPKKSQNMVLMGGLTKHVPITKNSFLLGTLSLCGIPPLACFWSK 417
Query: 384 -------WLI-------------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQ 423
WL TA Y S +L+F L V + FY+
Sbjct: 418 DEILNDSWLYSPIFAIIAWSTAGLTAFYMSRIYLLTFEGHLNVHFQNYSGKRNTPFYSIS 477
Query: 424 FGGESERYRDVSEVPLSMVV-------PQLILSSLCLIIGIFPALVVPLINEPIGAPIST 476
G+ + L ++ P + + ++ P+++ P A I T
Sbjct: 478 LWGKEGSKKSNKNFSLVTLLKMNKKGGPSFFSNKVSKFDENVRNMIQPVLSIPNFANIKT 537
Query: 477 SLY-LNFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAE 515
SLY D+T P++ +LI+ F ++G+ P E+ +
Sbjct: 538 SLYPYESDNTMLFPIL--ILILFTLFVGFLGI-PFNEDVD 574
>pir||T12707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Coulterella
capitata chloroplast >gi|845309|gb|AAC37739.1| (L39380)
NADH dehydrogenase [Coulterella capitata]
Length = 741
Score = 118 bits (293), Expect = 2e-25
Identities = 117/463 (25%), Positives = 213/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + ++ + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLIFPTATKSLRRMWAFQSVLLLSIV-MIFSMNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FFWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFW 213
+ + Y GS + + NL S + + ++ F +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLISNNEVNFVFVTLCAVLLFAGAIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R+M + P + + ++L+G +T+ G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFIVIPHIMNF-ISLIGIITVFFGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGS--------VEYATGET-NLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS V Y+ G++ N+ +GGL + + T ++ LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYSPGKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMCRIYLLTFEG 456
>emb|CAB85653.1| (AJ238340) NADH dehydrogenase [Nephrophyllidium crista-galli]
Length = 744
Score = 118 bits (293), Expect = 2e-25
Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ +Y
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSINLSIQQINSSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNL--KSLPSSATLLLYASFLIA-FMAKSGIVPFHFW 213
+ + Y GS + + NL + + L A L A +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLIYNNEVHFVFVTLCAGLLFAGAVAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMNF-ISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T +A LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKIAFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A F + +T + Y F G
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWFTAGLTAFYMFRIYFLTFEG 456
>sp|P48919|NU5M_CANPA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|602350|emb|CAA53371.1|
(X75674) NADH dehydrogense subunit 5 [Candida
parapsilosis]
Length = 555
Score = 118 bits (292), Expect = 3e-25
Identities = 138/572 (24%), Positives = 241/572 (42%), Gaps = 87/572 (15%)
Query: 62 DGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFV 121
D ++ M+ +G++ +LY+I YM P + Y + + F + M +++++ N +
Sbjct: 35 DSLAMTVMMPVGMVTLCVTLYAIEYMSHDPNRNTFYMML-SVFAMFMTILVVSDNYIMMF 93
Query: 122 FFWELMTLSSFILIT-WDEK--DFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD--- 175
WE + + S++LI+ W + + + + TF ++LG+ S+ ++D
Sbjct: 94 IGWEFVGVISYLLISFWSTRIAAMKAALSAMLLNRMGDTF-FMLALGMFLSYFHAVDFDT 152
Query: 176 ---AMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AG 231
A Y N L + LLL A+ AKS + H W+ + P+ +S+LL A
Sbjct: 153 LSLAAPYTNTLMLNMLSLLLLLAA-----TAKSAQLGLHAWLTQAME-GPTPVSALLHAA 206
Query: 232 AMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQ 291
M V+ L+R Y L S+ + LG VT V L A+ +D KK++A ++ Q
Sbjct: 207 TMVCAGVYVLVR-SYFILEYAPSLLIGICWLGGVTTLVSGLIAIVTNDIKKVIALSTMSQ 265
Query: 292 MGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSV--EYATGETNLDN 349
+ + L IGI S D I+H H+ FK LF+ AGSV Y + ++
Sbjct: 266 LSIMVLAIGIS-SYD---------LAIYHLYCHAFFKALLFMGAGSVIHSYISETQDMRK 315
Query: 350 LGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFIS 409
GGL + ++ A L+ASL++ +P G+ SK +I + Y G S + + +
Sbjct: 316 YGGLVNYLPFSYTAILIASLSLMAMPGLTGYYSKDIIIESLY--GTYTFSGYILYYMAVG 373
Query: 410 AVTLAS-------FIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGI----- 457
+ T S ++ FY + Y+ + E + M++P ++L + IG
Sbjct: 374 SATTTSLYSIRVLYLTFYNNP-NSNKATYQHMHE-NMRMLIPMIMLVIYSMFIGFNRDNV 431
Query: 458 --FPALVVPLINEPIGAPISTSLYLNFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAE 515
A+ +P N I + Y+ PLI GL + L
Sbjct: 432 IGHYAMSLPANNSFIETEFTLPWYIK-----LLPLILGLSLSLLLV-------------- 472
Query: 516 PWDCGASFIERDEYRVRAHHYYLKYEEKVGNFYAFGDWAYSVGASLVNAIVRFYVWIAKY 575
+I Y+VR Y + K+ +Y L N I+R + Y
Sbjct: 473 -------YIYEYAYKVRPSSIYNYFNNKI--YY---------DQLLNNVIMRKTLMFGGY 514
Query: 576 FVKIVDTPYTKVRGVSDLRKHKVMYIDEELFL 607
+D KV G + + + + YI+ +FL
Sbjct: 515 LNTYIDNGLLKVLGSTGISR-ALTYINIGMFL 545
>gb|AAF22398.1|AF047791_1 (AF047791) NADH dehydrogenase [Nama jamaicense]
Length = 696
Score = 118 bits (292), Expect = 3e-25
Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K + AF ++ LSIV ++F++ ++ +Y
Sbjct: 6 LPLTVPMLIGVGLLLFPTATKNLRRVWAFQSILLLSIV-MIFSINLSIQQINSSSIYQYV 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 WSWIINNEFSLEFGYLIDPLTSIMSILISTVGIMVLIYSDNYMSHDQG--YLRFFAYMSF 122
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 123 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFARPAAANACQKAFVTNRV-GDFGL 181
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFW 213
+ + Y GS + + +L S+ + L+ + L A + AKS P H W
Sbjct: 182 LLGILGFYWITGSFEFRDLFEVFNNLISTNKVNLFFATLCAVLLFAGAVAKSAQFPLHVW 241
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +G
Sbjct: 242 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFLGAT 299
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K LF
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKALLF 349
Query: 333 LSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV E G N+ +GGL + + T + LL +L++ G+PP F SK
Sbjct: 350 LGSGSVIHSMETVVGYSPDKSQNMGLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSK 409
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 410 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEG 448
>emb|CAB85647.1| (AJ238338) NADH dehydrogenase [Crispiloba disperma]
Length = 742
Score = 118 bits (292), Expect = 3e-25
Identities = 118/467 (25%), Positives = 213/467 (45%), Gaps = 68/467 (14%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV +VF++ ++ +Y
Sbjct: 14 LPLPVPMLIGVGLLLFPTATKSLRRLWAFQSVLLLSIV-MVFSINLSIQQINNGSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM + G ++ AY +F
Sbjct: 73 WSWITNNYFPLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSQDRG--YLKFFAYMSF 130
Query: 105 L-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
SM ++I+SNL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVISSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLD---------AMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVP 209
+ + Y GS + ++ Y N +L + +LL+A + AKS P
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNSLIYNNQVNLLFVTLCAVLLFAGAV----AKSAQFP 245
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLT 268
H W+P + P+ IS+L+ A M +F + R+M P + L++L+G +T+
Sbjct: 246 LHIWLPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFRVIPHIMN-LISLMGIITVF 303
Query: 269 VGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
+G AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSK 353
Query: 329 GSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNG 379
LFL +GS+ ++ N+ +GGL + + T A L +L++ G+PP
Sbjct: 354 ALLFLGSGSIIHSMETIVGYSPEKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLAC 413
Query: 380 FLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
F SK I N + F A++A + +T + Y F G
Sbjct: 414 FWSKDEI----LNDSWLYSPFFAIIAWSTAGLTAFYLFRIYLLTFEG 456
>gi|6691418 NADH dehydrogenase subunit 5 [Terebratulina retusa]
>gi|6165472|emb|CAB59851.1| (AJ245743) NADH
dehydrogenase subunit 5 [Terebratulina retusa]
Length = 574
Score = 117 bits (291), Expect = 3e-25
Identities = 134/504 (26%), Positives = 238/504 (46%), Gaps = 55/504 (10%)
Query: 10 LVLFILGMLG-GLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVYIDGFSLIF 68
L+LF L +L LSK +K S +L + +++ LP+ +D S++F
Sbjct: 21 LILFALILLPLSLSKFLWKSSLLEWSLMKMGPASII------------LPLILDTKSILF 68
Query: 69 MLILGILGFSASLYSIPYMERH--PGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWEL 126
++ ++ S YS YM+ P + + V F+LSM L++ +L+ + W+
Sbjct: 69 AEVVMMISSSVLWYSYYYMDTDNTPPRFTLLVVL---FVLSMSLLIFIPSLIALILGWDG 125
Query: 127 MTLSSFILITWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSL- 185
+ L SF L+ + + K +A ++T + + + +++ NL S+
Sbjct: 126 LGLVSFCLVIYYQN------KKSLAAGVITALMNRVGDACLIAAMALCLNLSHWNLMSMN 179
Query: 186 --PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLI 242
PS A LL+ +A M KS +PF W+P+ AP+ +S+L+ + + V+ LI
Sbjct: 180 QVPSLAQALLF----LAAMTKSAQMPFSAWLPAAM-AAPTPVSALVHSSTLVTAGVYILI 234
Query: 243 RIMYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIG 302
R + L T ++ LLG +T ++ +L A++E+D KK++A ++ Q+G ++
Sbjct: 235 RF-FPFLTTSQTFKTSTLLLGLLTASMASLAAIKENDLKKVIALSTLSQLGLMF----SA 289
Query: 303 LSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGET-NLDNLGGLAERMKWTG 361
L L SP+ L FH L H+LFK LFL+AG++ + T ++ +G L+ + T
Sbjct: 290 LFLMSPMICL------FHLLTHALFKALLFLAAGNIIHLHSSTQDIRLVGHLSSSLPTTS 343
Query: 362 LATLLASLAISGVPPFNGFLSKWLIYTAGYNS---GDMVLSFGAVLAVFISAVTLASFIK 418
A +A+ A+ G P F SK LI A S G ++ F A LA+ + SF+
Sbjct: 344 AAMNIANFALMGTPFLAAFYSKDLIIQATELSLIPGPILYWFLASLALTAAYSLRLSFLM 403
Query: 419 FYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPISTSL 478
++S + D ++ ++ P LS ++ G A++ ++E P S L
Sbjct: 404 LWSSYNQPPTSNVTDSNK---NVYSPMTTLSIGAIVGG---AIMQWSLSENFSPPTSPML 457
Query: 479 YLNFDS-TAFSPLIFGLLIVTLAF 501
S S LI G L+V ++
Sbjct: 458 LTVSPSIPLISGLILGALLVLFSY 481
>gb|AAF08865.1|AF194834_1 (AF194834) NADH dehydrogenase [Basella alba]
Length = 717
Score = 117 bits (291), Expect = 3e-25
Identities = 119/466 (25%), Positives = 211/466 (44%), Gaps = 68/466 (14%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +PL++ + +L + K + AF+++ LSIV ++F++K ++ +Y
Sbjct: 16 LPVPLLIGVGLLLFPTTTKNLRRIWAFSSILLLSIV-MIFSMKLSIQQINSNSIYQYVWS 74
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ + +YS YM G ++ AY +F
Sbjct: 75 WTINNDFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDHG--YLRFFAYMSFFN 132
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L +
Sbjct: 133 TSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFGLLL 191
Query: 163 SLGVSYSFLGSLDAMT----YPNLKSLPSSAT---LLLYASFLI--AFMAKSGIVPFHFW 213
+ Y GS + + N K + ++ + + +FL+ +AKS P H W
Sbjct: 192 GILGIYWITGSFEFRDLFEIFNNFKLINANGVHFLVCILCTFLLFTGAVAKSAQFPLHVW 251
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYL---VALLGAVTLTV 269
+P + P+ IS+L+ A M +F + R+ LP I Y+ ++ +G +T+ +
Sbjct: 252 LPDAME-GPTPISALIHAATMVAAGIFLVARL----LPLFVVIPYIMNGISFIGIITVLL 306
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +GIG A +FH + H+ K
Sbjct: 307 GATLALAQKDIKRSLAYSTMSQLGYMMLALGIG----------SYRAALFHLITHAYSKA 356
Query: 330 SLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV ++ N+ +GGL + + T A L+ +L++ G+PP F
Sbjct: 357 LLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKNAFLIGTLSLCGIPPLACF 416
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A F + +T + Y F G
Sbjct: 417 WSKDEI----LNDSWLYSPIFAIIAYFTAGLTAFYMFRIYLLTFEG 458
>gb|AAF22392.1|AF047785_1 (AF047785) NADH dehydrogenase [Hydrophyllum capitatum var.
capitatum]
Length = 696
Score = 117 bits (291), Expect = 3e-25
Identities = 121/466 (25%), Positives = 210/466 (44%), Gaps = 67/466 (14%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSS-------AFAALASLSIVALVFNLKPVEGKLLGLPVY 60
+PL+ I+ ML G+ F ++ AF ++ LSIV ++F++ ++ +Y
Sbjct: 3 IPLLPLIVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQINSSSIY 61
Query: 61 -------------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY 101
ID + I +++ +G +YS YM G ++ AY
Sbjct: 62 QYVWSWIINNNFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQG--YLRFFAY 119
Query: 102 NAFLLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTT 157
+F + L L+TS NL+ FWEL+ + S++LI W + K +I +
Sbjct: 120 MSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFITNRV-GD 178
Query: 158 FPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPF 210
F L + + Y GS + + +L S+ + + + L A + AKS P
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFEVFNNLISTNEVNFFFATLCAILLFGGAVAKSAQFPL 238
Query: 211 HFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV 269
H W+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +
Sbjct: 239 HVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFL 296
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K
Sbjct: 297 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKA 346
Query: 330 SLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV E G N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 347 LLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKYVPITKTAFLLGTLSLCGIPPLACF 406
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A + +T + Y F G
Sbjct: 407 WSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTFEG 448
>gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris fernandeziana]
Length = 443
Score = 117 bits (291), Expect = 3e-25
Identities = 113/420 (26%), Positives = 197/420 (46%), Gaps = 62/420 (14%)
Query: 8 LPLVLFI-LGML-GGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
LP+ + I LG+L ++ K + AF+++ LSIV L F+ V ++ G +Y
Sbjct: 20 LPVTMLIGLGLLLVPITTKNLRRMWAFSSVLLLSIVML-FSANLVIQQINGSSIYQYLWS 78
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
+D + I ++++ +G +YS YM G ++ +Y +F
Sbjct: 79 WTINNDFSLEFGYFVDSLTSIMLILITTVGIMVLIYSDNYMSHDQG--YLRFFSYMSFFN 136
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K ++ L F L +
Sbjct: 137 ASMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNR-LGDFGLLL 195
Query: 163 SLGVSYSFLGSLDAMTYPNLKS--LPSSATLLLYAS-----FLIAFMAKSGIVPFHFWVP 215
+ Y GS + + + + ++ L+A+ + +AKS P H W+P
Sbjct: 196 GILGLYWITGSFEFRDLFEISNNLIHNNGVNSLFATVCASLLFLGAVAKSAQFPLHVWLP 255
Query: 216 STYKVAPSNISSLL-AGAMEKIAVFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTL 272
+ P+ IS+L+ A M +F + R+ ++T +P I L++L+G +T+ +G
Sbjct: 256 DAME-GPTPISALIHAATMVAAGIFLVARLFPLFTVIPY---IMNLISLIGIITVFLGAT 311
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GYI L GIG A +FH + H+ K LF
Sbjct: 312 LALAQKDIKRSLAYSTMSQLGYIMLAPGIG----------SYRAALFHLITHAYSKALLF 361
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GS+ ++ N+ +GGL + + T LL +L++ G+PP F SK
Sbjct: 362 LGSGSIIHSMEPIVGYSPEKSQNMVFMGGLTKYVPITKKTFLLGTLSLCGIPPLACFWSK 421
>gi|5835312 NADH dehydrogenase subunit 5 [Arbacia lixula]
>gi|7432501|pir||T11801 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - sea urchin (Arbacia lixula)
mitochondrion >gi|1480396|emb|CAA56605.1| (X80396) NADH
dehydrogenase subunit 5 [Arbacia lixula]
Length = 638
Score = 117 bits (290), Expect = 4e-25
Identities = 121/454 (26%), Positives = 200/454 (43%), Gaps = 33/454 (7%)
Query: 55 LGLPVYIDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILIT 114
+ L + D + ++F+ + ++ +S +S YME P K V+ + FLL+M LIL
Sbjct: 108 VSLSILFDHYFIVFLTVALVVTWSIMEFSHYYMEEDPNKN-VFFLLLTIFLLNM-LILTC 165
Query: 115 SNLVWFVFF-WELMTLSSFILITW--DEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFL 171
SN ++ +F WE + SF+LI+W D + + + L + +S
Sbjct: 166 SNSLFLLFLGWEGVGFLSFLLISWWTTRNDASSSALAAVLYNRIGDIGLITFMALSILSF 225
Query: 172 GSLDAMTYPNLKSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAG 231
S + + S +S T + ++A KS H W+P+ + P+ +S+LL
Sbjct: 226 NSWNIQEILFISSNYTSLTPYILFGLILAAAGKSAQFGLHPWLPAAME-GPTPVSALLHS 284
Query: 232 AMEKIA-VFGLIRI--MYTALPTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHS 288
+ +A VF L R ++T P +++ + LLG +T A+ + D KK++AY +
Sbjct: 285 STMVVAGVFLLTRTSSLFTLSPLFQTV---IFLLGGITALFAASTAIAQHDIKKIVAYST 341
Query: 289 IGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYA-TGETNL 347
Q+G + IGIG + FH H+ FK LFL +GS+ ++ E +L
Sbjct: 342 TSQLGLMVTSIGIGQPI----------LAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDL 391
Query: 348 DNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVF 407
+ GL+ + T L SLA+ G P GF SK LI A S L L
Sbjct: 392 RKMSGLSSLLPVTSACLGLGSLALMGTPFLAGFYSKDLILEATGASLLNTLGLTMSLVAT 451
Query: 408 ISAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLIN 467
+ T + I F+ + R + E +++ + LS ++ G F A V L
Sbjct: 452 LLTGTYSFRIVFFCFSSNPSTNRLSPIGEENVNLGNALMRLSLGTVLSGWFFANFVFL-- 509
Query: 468 EPIGAPISTSLYLNFDSTAFSPLIFGLLIVTLAF 501
+ S +N + AF PLI +L L F
Sbjct: 510 -------APSFNVNCNVKAF-PLIVTILGTALLF 535
>emb|CAB39543.1| (AJ225083) putative NADH dehydrogenase [Forstera bidwillii]
Length = 746
Score = 117 bits (290), Expect = 4e-25
Identities = 116/480 (24%), Positives = 215/480 (44%), Gaps = 66/480 (13%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ +Y
Sbjct: 5 LPLPVPMLIGVGLLLFPTATKSLRRIWAFQSVLLLSIV-MIFSINLSLKQINSSSIYQYL 63
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I ++++ +G +YS YM G ++ AY +F
Sbjct: 64 WSWVINNDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDRG--YLRFFAYMSF 121
Query: 105 L-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDF-DPGIKYYIAMHILTTFPLF 161
SM ++ TSNL+ FWEL+ + S++LI W + + + + + F L
Sbjct: 122 FSTSMLGLVTTSNLIQIYIFWELVGMCSYLLIGFWFTRPVAENACQKAFVTNRVGDFGLL 181
Query: 162 ISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASFLIAFM-----AKSGIVPFHF 212
+ + Y GS + + NL + ++ T L+ S + AKS P H
Sbjct: 182 LGILGFYWITGSFEFCDLFQIFNNL--IYTNETNFLFVSLCAVLLFTGAVAKSAQFPLHV 239
Query: 213 WVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGT 271
W+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +T+ +G
Sbjct: 240 WLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMNF-ISLIGIITVFLGA 297
Query: 272 LYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSL 331
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K L
Sbjct: 298 TLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALL 347
Query: 332 FLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLS 382
FL +GSV ++ N+ +GGL + + T + LL +L++ G+PP F S
Sbjct: 348 FLGSGSVIHSMETIVGYSPNKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWS 407
Query: 383 KWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG----ESERYRDVSEVP 438
K I N + A++A + +T + Y F G + Y VP
Sbjct: 408 KDEI----LNDSWLYSPTFALIAYSTAGLTAFYMFRIYLLTFEGHLNVHFQNYNGTKNVP 463
>gb|AAF08155.1| (AF130199) NADH dehydrogenase subunit F [Coriandrum sativum]
Length = 749
Score = 117 bits (290), Expect = 4e-25
Identities = 108/422 (25%), Positives = 196/422 (45%), Gaps = 60/422 (14%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ +L + K+ + AF ++ LSIV ++F++ ++ G +Y
Sbjct: 14 LPLPVPMLIGAGLLLFPSATKSLRRMWAFQSVFLLSIV-MIFSINLFIQQINGSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTIGILVLIYSDNYMSYDQG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDAMT----YPNLKSLPSSATLLLYASFLIAFM-----AKSGIVPFH 211
+ + Y GS + + NL S ++ L+ +F + AKS P H
Sbjct: 190 LLGILGFYWITGSFEFRDLFKIFNNLIS--NNQVNFLFVTFCAVLLFAGAVAKSAQFPLH 247
Query: 212 FWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVG 270
W+P + P+ IS+L+ A M +F + R++ + P + + ++L+G +T+ G
Sbjct: 248 VWLPDAME-GPTPISALIHAATMVAAGIFLVARLIPLFIVIPHIMNF-ISLVGVITILFG 305
Query: 271 TLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGS 330
+AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 306 ATFALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKAL 355
Query: 331 LFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFL 381
LFL +GSV ++ N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 356 LFLGSGSVIHSMETLVGYSPNKSQNMVYMGGLTKHIPITKTAFLLGTLSLCGIPPLACFW 415
Query: 382 SK 383
SK
Sbjct: 416 SK 417
>gb|AAF08855.1|AF194823_1 (AF194823) NADH dehydrogenase [Allionia violacea]
Length = 709
Score = 117 bits (290), Expect = 4e-25
Identities = 117/466 (25%), Positives = 207/466 (44%), Gaps = 60/466 (12%)
Query: 6 LALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY----- 60
L +PL++ + ++ K + AF++++ LSIV ++F++K ++ +Y
Sbjct: 16 LPVPLLIGAGLLFFPIATKNLRRIWAFSSISLLSIV-MIFSMKLSIQQINSNFIYQYILS 74
Query: 61 --------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLL 106
ID + I +++ + +YS YM G ++ AY +F
Sbjct: 75 WTINNDFSLEFGYLIDPLASIMSILITTVAILVLIYSDNYMSHDRG--YLRFFAYMSFFN 132
Query: 107 SMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPLFI 162
+ L L+TS NL+ FWEL+ + S++LI W + K ++ I F L +
Sbjct: 133 TSMLGLVTSSNLIQIYVFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRI-GDFGLLL 191
Query: 163 SLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFWVP 215
+ Y GS + + NL + L L F +AKS P H W+P
Sbjct: 192 GILGLYWITGSFEFGDLFQIFNNLINKNEIDLLFCILCTLFLFAGPVAKSAQFPLHIWLP 251
Query: 216 STYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTLYA 274
+ P+ IS+L+ A M +F + R++ + P ++ +++ + +T+ +G A
Sbjct: 252 DAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVVPYTMN-VISFISIITVLLGATLA 309
Query: 275 LRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLS 334
L + D K+ LAY ++ Q+GY+ L +G+G A +FH + H+ K LFL
Sbjct: 310 LAQKDIKRSLAYSTMSQLGYMMLALGMG----------SYRAALFHLITHAYSKALLFLG 359
Query: 335 AGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWL 385
+GS+ ++ N+ +GGLA + T A L+ +L++ G+PP F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDE 419
Query: 386 IYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGGESERY 431
I N + A+LA F + +T + Y F G Y
Sbjct: 420 I----LNDSWLYSPIFAILAYFTAGLTAFYMFRIYLLTFEGHLNVY 461
>gb|AAF22409.1|AF047802_1 (AF047802) NADH dehydrogenase [Phacelia minor]
Length = 696
Score = 117 bits (290), Expect = 4e-25
Identities = 118/466 (25%), Positives = 211/466 (44%), Gaps = 67/466 (14%)
Query: 8 LPLVLFILGMLGGLSKKAFKVSS-------AFAALASLSIVALVFNLKPVEGKLLGLPVY 60
+PL+L + ML G+ F ++ AF ++ LSIV ++F++ ++ +Y
Sbjct: 3 IPLLLLTVPMLIGVGLLLFPTATKTLRRMWAFQSILLLSIV-MIFSINLSLQQINSSSIY 61
Query: 61 -------------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAY 101
ID + I +++ +G +YS YM G ++ +Y
Sbjct: 62 QYVWSWIINNNFSFEFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDQG--YLIFFSY 119
Query: 102 NAFL-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTT 157
+F +SM ++ +SNL+ FWEL+ + S++LI W + K ++ +
Sbjct: 120 MSFFSISMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GD 178
Query: 158 FPLFISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPF 210
F L + + Y GS + + +L S+ + + + L A + AKS P
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFEVFNNLISTNEVNFFFATLCAVLLFAGAVAKSAQFPL 238
Query: 211 HFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTV 269
H W+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +
Sbjct: 239 HVWLPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFL 296
Query: 270 GTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKG 329
G AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K
Sbjct: 297 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKA 346
Query: 330 SLFLSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGF 380
LFL +GSV E G N+ +GGL + + T A LL +L++ G+PP F
Sbjct: 347 LLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACF 406
Query: 381 LSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
SK I N + A++A + +T + Y F G
Sbjct: 407 WSKDEI----LNDSWLYSPIFAIIAWATAGLTAFYMFRIYLLTFEG 448
>emb|CAB85649.1| (AJ238339) NADH dehydrogenase [Cyphia rogersii]
Length = 706
Score = 117 bits (290), Expect = 4e-25
Identities = 118/463 (25%), Positives = 212/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ +Y
Sbjct: 14 LPLPVPILIGVGLLLFPAATKSLRRMWAFQSVLLLSIV-MIFSINLSIQQINSSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMFHDRG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDAMT----YPNL--KSLPSSATLLLYASFLIA-FMAKSGIVPFHFW 213
+ + + GS + + NL K+ + + L A FL + AKS P H W
Sbjct: 190 LLGILGFFWITGSFEFRNLFQIFNNLIYKNEVNFLFVTLCAIFLFSGAAAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + L++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIGIPHIMN-LISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D KK LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKKGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMQTIVGYSPNKSQNMVFMGGLKKHLPITKTAFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T ++ Y F G
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMVRIYLLTFEG 456
>pir||T12697 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Blennosperma
nana chloroplast >gi|845228|gb|AAC37442.1| (L39433) NADH
dehydrogenase [Blennosperma nana]
Length = 756
Score = 117 bits (290), Expect = 4e-25
Identities = 145/582 (24%), Positives = 257/582 (43%), Gaps = 89/582 (15%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L S K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTSTKSIRRIWAFQSILLLSIV-MIFSINLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMAHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLLQIYIFWELVGICSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFW 213
+ + Y GS + + NL L + ++ F +AKS P H W
Sbjct: 190 LLGILGFYWVTGSFEFRDLFQIFNNLIYNNEVNFLFVTLCAVLLFAGPIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R+M L P + + ++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFLVIPHIMNF-ISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T + LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYCPKKSQNMALMGGLTKHVPITKNSFLLGTLSLCGIPPLACFWSK 417
Query: 384 -------WLI-------------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYT-S 422
WL TA Y S +L+F L V + FY+ S
Sbjct: 418 DEILNHSWLYSPIFAIIAWSTAGLTAFYMSRIYLLTFEGHLNVHFQNYSGKRNTPFYSIS 477
Query: 423 QFGGESER-----YRDVSEVPLSMVVPQLILSSLCLIIGI---FPALVVPLINEPIGAPI 474
+G ES + +R V+ + + S+ + ++ P+++ P A I
Sbjct: 478 LWGKESSKKSNKNFRLVTLLKMKKKRGTSFFSNSSKVYKFDENVRNMIQPVLSIPNFANI 537
Query: 475 STSLY-LNFDSTAFSPLIFGLLIVTLAFGTYIGLEPRGEEAE 515
TSLY D+T P++ +LI+ F ++G+ P E+ +
Sbjct: 538 KTSLYPYESDNTMLFPIL--ILILFTLFVGFLGI-PFNEDVD 576
>pir||T13377 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lopholaena
coriifolia chloroplast >gi|845566|gb|AAC37758.1|
(L39434) NADH dehydrogenase [Lopholaena coriifolia]
Length = 741
Score = 117 bits (290), Expect = 4e-25
Identities = 140/576 (24%), Positives = 253/576 (43%), Gaps = 94/576 (16%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSMNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGICSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA---------MTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVP 209
+ + Y GS + + Y N +L + +LL+A + AKS P
Sbjct: 190 LLGILGFYWVTGSFEFRDLFQIFNNLIYNNEVNLLFVTLCAVLLFAGAV----AKSAQFP 245
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLT 268
H W+P + P+ IS+L+ A M +F + R+M + P + + ++L+G +T+
Sbjct: 246 LHVWLPDAME-GPTPISALIHAATMVAAGIFLVARVMPLFIVIPHIMNF-ISLIGIITVF 303
Query: 269 VGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
+G AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSK 353
Query: 329 GSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNG 379
LFL +GSV ++ N+ +GGL + + T + LL +L++ G+PP
Sbjct: 354 ALLFLGSGSVIHSMETLVGYCPKKSQNMVLMGGLTKHVPITKNSFLLGTLSLCGIPPLAC 413
Query: 380 FLSK-------WLI-------------YTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF 419
F SK WL TA Y S +L+F L V + F
Sbjct: 414 FWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMSRIYLLTFEGHLNVHFKNYSGKRNTPF 473
Query: 420 YTSQFGGE------SERYRDVSEVPLSMV-VPQLILSSLCLIIGIFPALVVPLINEPIGA 472
Y+ G+ + +R V+ + + P + + ++ P+++ P A
Sbjct: 474 YSISLWGKEGSKISKKNFRLVTLLKMKKKRGPSFFSNKVSKFDENVRNMIRPVLSIPNFA 533
Query: 473 PISTSLY-LNFDSTAFSPLIFGLLIVTLAFGTYIGL 507
I TSLY D+T P++ +LI+ F ++G+
Sbjct: 534 NIKTSLYPYESDNTMLFPIL--ILILFTLFVGFLGI 567
>sp|Q32384|NU5C_HELAN NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|7432497|pir||T12614 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - common sunflower chloroplast
>gi|845418|gb|AAC37455.1| (L39383) NADH dehydrogenase
[Helianthus annuus]
Length = 741
Score = 116 bits (289), Expect = 6e-25
Identities = 143/572 (25%), Positives = 257/572 (44%), Gaps = 86/572 (15%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F+L ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSLNLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNLKSLP--SSATLLLYASFLIA-FMAKSGIVPFHFW 213
+ + Y GS + + NL S +S + L A L A +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLISNNEVNSVFVTLCAVLLFAGAIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R+M + P + + ++L+G +T+ G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFIVIPHIMNF-ISLIGIITVFFGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T + LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYCPKKSQNMVLMGGLKKHVPITKNSFLLGTLSLCGIPPLACFWSK 417
Query: 384 -------WLI---------YTAGYNSGDM----VLSFGAVLAV-FISAVTLASFIKFYTS 422
WL TAG+ + DM +L+F L V F + V + + S
Sbjct: 418 DEILNDSWLYSPIFAIIAWSTAGFTAFDMCRIYLLTFEGHLNVHFQNYVGKRNTPLYLIS 477
Query: 423 QFGGESERYRDVSEVPLSMVV------PQLILSSLCLIIGIFPALVVPLINEPIGAPIST 476
+G E + + + ++++ P + + + L+ P ++ P + T
Sbjct: 478 LWGKEGSKISNKNFCLVTLLKMNKNGRPSFFSNKVYKMDENGRNLIQPFLSIPNFSNTKT 537
Query: 477 SLY-LNFDSTAFSPLIFGLLIVTLAFGTYIGL 507
SLY D+T P++ +LI+ F ++G+
Sbjct: 538 SLYPYESDNTMLFPIL--ILILFTLFVGFLGI 567
>gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana]
>gi|6686315|sp|P26288|NU4C_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 4, CHLOROPLAST
>gi|5881746|dbj|BAA84437.1| (AP000423) NADH
dehydrogenase ND4 [Arabidopsis thaliana]
Length = 506
Score = 116 bits (289), Expect = 6e-25
Identities = 107/434 (24%), Positives = 194/434 (44%), Gaps = 31/434 (7%)
Query: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
IDG S+ +L+ G + A+L + P ++ Y+ + S + +L+ F
Sbjct: 88 IDGLSIGTILLTGFITTLATLAAFPVTRDSRFFHFLMLAMYSGQIGSFS----SRDLLLF 143
Query: 121 VFFWELMTLSSFILIT-WDEKDFDPGIKYYIAMHILTTF--PLFISLGV-SYSFLGSLDA 176
WEL + ++L++ W K Y IL T +F+ +GV S GS +
Sbjct: 144 FIMWELELIPVYLLLSMWGGKKR----LYSATKFILYTAGSSIFLLIGVLGISLYGSNEP 199
Query: 177 MTYPNL---KSLPSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAM 233
L KS P + +L Y FLIAF KS I+P H W+P T+ A + LLAG +
Sbjct: 200 TLNLELLANKSYPVTLEILFYIGFLIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGIL 259
Query: 234 EKIAVFGLIRIMYTALPTPKSI-GYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQM 292
K+ +GL+RI LP S+ + ++G + + + + + KK +AY S+ M
Sbjct: 260 LKMGAYGLVRINMELLPHAHSMFSPWLLVVGTIQIIYAASTSPGQRNLKKRIAYSSVSHM 319
Query: 293 GYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGG 352
G+I +GI S+ P G+ I ++H +LF AG+ LD +GG
Sbjct: 320 GFIIIGIS---SITDP----GLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGG 372
Query: 353 LAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVT 412
+A + + S+A +P +GF+++++++ G + + +F+ A+
Sbjct: 373 MAISIPKIFTMFTILSMASLALPGMSGFIAEFIVF-FGIITSQKYFLISKIFIIFVMAIG 431
Query: 413 LASFIKFYTSQFGGESERYRDVSEVPLSMV--VPQLILSSLCLI-----IGIFPALVVPL 465
+ + S Y+ ++ S P+ + S+ ++ IGI+P V+ L
Sbjct: 432 MILTPIYLLSMLRQMFYGYKLINIKNFSFFDSGPRELFLSISILLPIIGIGIYPDFVLSL 491
Query: 466 INEPIGAPISTSLY 479
++ + + +S Y
Sbjct: 492 ASDKVESILSNYFY 505
>gb|AAF22394.1|AF047787_1 (AF047787) NADH dehydrogenase [Eriodictyon sessilifolium]
Length = 696
Score = 116 bits (289), Expect = 6e-25
Identities = 109/420 (25%), Positives = 197/420 (45%), Gaps = 56/420 (13%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K + AF ++ LSIV ++F++ ++ +Y
Sbjct: 6 LPLTVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQINSSSIYQYV 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 RSWIINNDFYLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQG--YLRFFAYMSF 122
Query: 105 L-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
SM ++I+SNL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 123 FSTSMLGLVISSNLIQIYIFWELVGMCSYLLIGFWFARPLAANACQKAFVTNRV-GDFGL 181
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFW 213
+ + Y GS + + +L S+ + + + L A + AKS P H W
Sbjct: 182 LLGILGFYWITGSFEFRDLFEVFNNLISTNKVNFFFATLCAGLLFAGAVAKSAQFPLHVW 241
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +G
Sbjct: 242 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFLGAT 299
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K LF
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGXYRNA----------LFHLITHAYSKALLF 349
Query: 333 LSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV E G N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 350 LGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 409
>gb|AAF22423.1|AF047816_1 (AF047816) NADH dehydrogenase [Turricula parryi]
Length = 696
Score = 116 bits (289), Expect = 6e-25
Identities = 109/420 (25%), Positives = 197/420 (45%), Gaps = 56/420 (13%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K + AF ++ LSIV ++F++ ++ +Y
Sbjct: 6 LPLTVPMLIGVGLLLFPTATKNLRRMWAFQSILLLSIV-MIFSINLSIQQINSSSIYQYV 64
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 65 RSWIINNDFYLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQG--YLRFFAYMSF 122
Query: 105 L-LSMFLILITSNLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
SM ++I+SNL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 123 FSTSMLGLVISSNLIQIYIFWELVGMCSYLLIGFWFARPLAANACQKAFVTNRV-GDFGL 181
Query: 161 FISLGVSYSFLGSLDAMT-YPNLKSLPSSATLLLYASFLIAFM------AKSGIVPFHFW 213
+ + Y GS + + +L S+ + + + L A + AKS P H W
Sbjct: 182 LLGILGFYWITGSFEFQDLFEVFNNLISTNKVNFFFATLCAGLLFAGAVAKSAQFPLHVW 241
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + + +AL+G +T+ +G
Sbjct: 242 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNF-IALIGIITVFLGAT 299
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G ++ +FH + H+ K LF
Sbjct: 300 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRNA----------LFHLITHAYSKALLF 349
Query: 333 LSAGSV----EYATG-----ETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV E G N+ +GGL + + T A LL +L++ G+PP F SK
Sbjct: 350 LGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 409
>pir||T13677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Santolina
chamaecyparissus chloroplast >gi|847657|gb|AAC37776.1|
(L39444) NADH dehydrogenase [Santolina chamaecyparissus]
Length = 741
Score = 116 bits (289), Expect = 6e-25
Identities = 119/467 (25%), Positives = 213/467 (45%), Gaps = 68/467 (14%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSINLSIQQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNLKS-------LPSSATLLLYASFLIAFMAKSGIVP 209
+ + Y GS + + NL S +S +LL+A + AKS P
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLISNNEVNFLFVTSCAVLLFAGAI----AKSAQFP 245
Query: 210 FHFWVPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLT 268
H W+P + P+ IS+L+ A M +F + R+M + P +I L++L+G +T+
Sbjct: 246 LHVWLPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFIVIP-NIMNLISLIGIITVF 303
Query: 269 VGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFK 328
+G AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSK 353
Query: 329 GSLFLSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNG 379
LFL +GSV ++ N+ +GGL + + T + LL +L++ G+PP
Sbjct: 354 ALLFLGSGSVIHSMETLVGYCPKKSQNMVLMGGLTKHVPITKNSFLLGTLSLCGIPPLAC 413
Query: 380 FLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
F SK I ++ + A++A + +T + Y F G
Sbjct: 414 FWSKDEILNDSWSYSPIF----AIIAWSTAGLTAFYMCRIYLLTFEG 456
>sp|Q32091|NU5C_CARTI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|7432463|pir||T12760 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - safflower chloroplast
>gi|845248|gb|AAC37445.1| (L39417) NADH dehydrogenase
[Carthamus tinctorius]
Length = 743
Score = 116 bits (288), Expect = 7e-25
Identities = 116/463 (25%), Positives = 210/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ VY
Sbjct: 14 LPLPVPMLIGVGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSMNLSIHQINSSSVYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGICSYLLIGFWFTRPVAAKACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNLKSLPSSATLLLYASFLIAF---MAKSGIVPFHFW 213
+ + Y GS + + NL S L + ++ F +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLISNNEVNFLFVTLCAVLLFAGAIAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R+M + P + + ++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLMPLFIVIPHIMNF-ISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T ++ LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETLVGYCPKKSQNMVLMGGLTKHVPITKISFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMCRIYLLTFEG 456
>pir||T13485 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Menyanthes
trifoliata chloroplast >gi|845606|gb|AAC37458.1|
(L39388) NADH dehydrogenase [Menyanthes trifoliata]
Length = 744
Score = 116 bits (288), Expect = 7e-25
Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)
Query: 4 MELALPLVLFILGMLGGLSKKAFKVSSAFAALASLSIVALVFNLKPVEGKLLGLPVY--- 60
+ L +P+++ + +L + K+ + AF ++ LSIV ++F++ ++ +Y
Sbjct: 14 LPLPVPMLIGLGLLLFPTATKSLRRMWAFQSVLLLSIV-MIFSINLSIQQINSSSIYQYV 72
Query: 61 ----------------IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAF 104
ID + I +++ +G +YS YM G ++ AY +F
Sbjct: 73 WSWIINNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHG--YLRFFAYMSF 130
Query: 105 LLSMFLILITS-NLVWFVFFWELMTLSSFILIT-WDEKDFDPGI--KYYIAMHILTTFPL 160
+ L L+TS NL+ FWEL+ + S++LI W + K ++ + F L
Sbjct: 131 FSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRV-GDFGL 189
Query: 161 FISLGVSYSFLGSLDA----MTYPNL--KSLPSSATLLLYASFLIA-FMAKSGIVPFHFW 213
+ + Y GS + + NL + + + L A L A +AKS P H W
Sbjct: 190 LLGILGFYWITGSFEFRDLFQIFNNLIYNNEVNFVFVTLCAGLLFAGAVAKSAQFPLHVW 249
Query: 214 VPSTYKVAPSNISSLL-AGAMEKIAVFGLIRIMYTALPTPKSIGYLVALLGAVTLTVGTL 272
+P + P+ IS+L+ A M +F + R++ + P + L++L+G +T+ +G
Sbjct: 250 LPDAME-GPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMN-LISLIGIITVFLGAT 307
Query: 273 YALRESDAKKLLAYHSIGQMGYIWLGIGIGLSLDSPLGALGMFAGIFHALNHSLFKGSLF 332
AL + D K+ LAY ++ Q+GY+ L +G+G + +FH + H+ K LF
Sbjct: 308 LALAQKDIKRGLAYSTMSQLGYMMLALGMG----------SYRSALFHLITHAYSKALLF 357
Query: 333 LSAGSVEYA---------TGETNLDNLGGLAERMKWTGLATLLASLAISGVPPFNGFLSK 383
L +GSV ++ N+ +GGL + + T +A LL +L++ G+PP F SK
Sbjct: 358 LGSGSVIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKIAFLLGTLSLCGIPPLACFWSK 417
Query: 384 WLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKFYTSQFGG 426
I N + A++A + +T + Y F G
Sbjct: 418 DEI----LNDSWLYSPIFAIIAWSTAGLTAFYMFRIYFLTFEG 456
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.143 0.432
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235335662
Number of Sequences: 2977
Number of extensions: 10202121
Number of successful extensions: 49034
Number of sequences better than 1.0e-10: 2114
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2091
Number of HSP's that attempted gapping in prelim test: 40842
Number of HSP's gapped (non-prelim): 2660
length of query: 647
length of database: 189,106,746
effective HSP length: 54
effective length of query: 593
effective length of database: 156,788,448
effective search space: 92975549664
effective search space used: 92975549664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 168 (69.9 bits)