BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1393 (hyfC) DE:HYDROGENASE-4 COMPONENT C (EC 1.-.-.-)
(299 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 ... 582 e-165
sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNI... 149 4e-35
sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AA... 141 1e-32
pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [s... 141 1e-32
pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3... 122 5e-27
pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 121 9e-27
pir||T51315 probable CO-induced hydrogenase complex chain CooK [... 113 2e-24
pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 96 4e-19
emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related... 90 4e-17
emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri] 89 7e-17
pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 88 1e-16
pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 88 1e-16
pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 87 2e-16
gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina] >gi... 85 7e-16
gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit... 85 1e-15
emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans] 84 2e-15
gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephr... 84 2e-15
emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidops... 84 2e-15
pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 83 5e-15
pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 82 8e-15
gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea] >... 82 8e-15
pir||D70749 probable hycD protein - Mycobacterium tuberculosis (... 82 1e-14
gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas american... 81 1e-14
pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 81 2e-14
emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 80 3e-14
pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 80 4e-14
sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 80 4e-14
pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 80 4e-14
gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit ... 80 4e-14
sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 79 6e-14
pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 79 6e-14
gb|AAK40660.1| NADH dehydrogenase subunit H (NuoH) [Sulfolobus ... 79 6e-14
sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 79 7e-14
gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU... 79 7e-14
pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 79 7e-14
gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, put... 79 7e-14
gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea] >gi... 78 1e-13
gb|AAK41289.1| Formate hydrogenlyase subunit 4 (hycD) [Sulfolobu... 78 1e-13
gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiform... 78 1e-13
gi|11466917 NADH-ubiquinone oxidoreductase subunit 1 [Podospora ... 78 2e-13
sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 78 2e-13
sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 78 2e-13
gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU... 77 2e-13
emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [... 77 2e-13
gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile] >gi|3... 77 3e-13
emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120] 77 3e-13
sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >... 76 4e-13
gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae... 76 4e-13
gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi] >gi... 76 5e-13
emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine gl... 76 6e-13
emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare] 75 8e-13
sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 75 1e-12
gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum] >... 75 1e-12
gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana] >gi|588... 75 1e-12
emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 75 1e-12
gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroid... 75 1e-12
gi|11466852 NADH dehydrogenase ND1 [Oryza sativa] >gi|128620|sp|... 74 2e-12
sp|Q60019|NQO8_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NAD... 74 2e-12
sp|O78699|NU1M_TAMTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 74 2e-12
gb|AAF13042.2|AF157639_2 (AF157639) HycD [Desulfitobacterium deh... 74 2e-12
gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P257... 74 2e-12
pir||S06058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 73 4e-12
gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideu... 73 6e-12
gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Protothe... 73 6e-12
pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Metha... 72 7e-12
gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima... 72 7e-12
gi|9838451 NADH dehydrogenase subunit 1 [Beta vulgaris] >gi|9087... 72 7e-12
sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 72 9e-12
pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 72 9e-12
sp|Q01300|NU1M_PETHY NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 71 1e-11
pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 71 1e-11
gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesos... 71 1e-11
sp|P29920|NQO8_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NAD... 71 2e-11
gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus] >gi|1... 71 2e-11
pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 ... 71 2e-11
sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 H... 70 3e-11
sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 70 4e-11
gb|AAA70292.1| (M63034) NADH dehydrogenase (ubiquinone) [Oenothe... 69 5e-11
gi|5835793 NADH dehydrogenase subunit 1 [Erinaceus europaeus] 69 5e-11
gb|AAA65487.1| (M57527) NDI [Rana catesbeiana] 69 6e-11
sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 69 6e-11
gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippien... 69 6e-11
sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 69 8e-11
gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]... 69 8e-11
gb|AAF63419.1|AF150756_1 (AF150756) NADH dehydrogenase subunit 1... 69 8e-11
>pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458892|emb|CAB50379.1| (AJ248287) HYDROGENASE-4
COMPONENT C (EC 1.-.-.-) [Pyrococcus abyssi]
Length = 299
Score = 582 bits (1484), Expect = e-165
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW
Sbjct: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
Query: 61 LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS 120
LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS
Sbjct: 61 LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS 120
Query: 121 HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV 180
HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV
Sbjct: 121 HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV 180
Query: 181 ESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITT 240
ESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITT
Sbjct: 181 ESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITT 240
Query: 241 QAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVFAMSFLGW 299
QAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVFAMSFLGW
Sbjct: 241 QAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVFAMSFLGW 299
>sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 3
COMPONENT D) >gi|78774|pir||S08622 hydrogenase (EC
1.18.99.1) 3 chain 4 - Escherichia coli
>gi|41683|emb|CAA35549.1| (X17506) hycD [Escherichia
coli] >gi|882615|gb|AAA69232.1| (U29579) formate
hydrogenlyase subunit 4 [Escherichia coli]
>gi|1789077|gb|AAC75764.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12] >gi|1093497|prf||2104213D hycD
gene [Escherichia coli]
Length = 307
Score = 149 bits (372), Expect = 4e-35
Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 9/295 (3%)
Query: 7 LALGIVLF-LPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIP-TRNWLFKL 64
L +VLF + P L GI R +AR+ +RRGP ++Q + D++KLL SV P W+F+L
Sbjct: 7 LIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRL 66
Query: 65 YPYLAFASAIVAALLLPYGGV-IPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLG 123
PY+ + A LP V PL +LI Y + F ++G + F+ +G
Sbjct: 67 TPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIG 126
Query: 124 SAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTP-----SLIVAYAILAYSM 178
++RE ML + VEP+L + + A AGS +I I ++ P L++A A++
Sbjct: 127 ASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFAT 186
Query: 179 YVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV-LPLVP 237
++E G +PFD+AEAE E+ GPL+EYSG G+ + I +K+ +L FV + + +
Sbjct: 187 FIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQME 246
Query: 238 ITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVF 292
T LLAL++ ++ + VIA E + ARLR+D ++ F + + F
Sbjct: 247 TFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAF 301
>sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AAB88565.1| (M63654) HyfC
[Escherichia coli]
Length = 315
Score = 141 bits (351), Expect = 1e-32
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 18/308 (5%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
++ F + I+L L P GI+R+++AR+ RRGP + Q + D+ KL V PT +
Sbjct: 10 LVIFALAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSG 69
Query: 61 L-FKLYPYLAFASAIVAALLLP-YGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNA 118
L F+L P++ +S +V A+ LP + V P G +LI Y + + F L+G +
Sbjct: 70 LMFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSP 129
Query: 119 FSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LHLTPSLIVAYAILA 175
F+ +G++RE+ L + VEP+L + +LA AGS I E+ISN + L A+LA
Sbjct: 130 FAGVGASRELTLGILVEPMLILSLLVLALIAGSTHI-EMISNTLAMGWNSPLTTVLALLA 188
Query: 176 --YSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVL 233
++ ++E G +PFDVAEAE E+ GPL EYSG L + + + +K+ + FV+L L
Sbjct: 189 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMASLFVAL-FL 247
Query: 234 PL--VPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIV 291
P + A L +L++ LL L ++ + + E T AR R + + + +
Sbjct: 248 PFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRF-------LLIHHVTWLG 300
Query: 292 FAMSFLGW 299
F+++ L W
Sbjct: 301 FSLAALAW 308
>pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [similarity] -
Escherichia coli (strain K-12)
>gi|1788828|gb|AAC75536.1| (AE000335) hydrogenase 4
membrane subunit [Escherichia coli K12]
>gi|1799911|dbj|BAA16361.1| (D90876) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
>gi|1805542|dbj|BAA16371.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
Length = 322
Score = 141 bits (351), Expect = 1e-32
Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 18/308 (5%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
++ F + I+L L P GI+R+++AR+ RRGP + Q + D+ KL V PT +
Sbjct: 17 LVIFALAQAVILLMLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSG 76
Query: 61 L-FKLYPYLAFASAIVAALLLP-YGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNA 118
L F+L P++ +S +V A+ LP + V P G +LI Y + + F L+G +
Sbjct: 77 LMFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSP 136
Query: 119 FSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LHLTPSLIVAYAILA 175
F+ +G++RE+ L + VEP+L + +LA AGS I E+ISN + L A+LA
Sbjct: 137 FAGVGASRELTLGILVEPMLILSLLVLALIAGSTHI-EMISNTLAMGWNSPLTTVLALLA 195
Query: 176 --YSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVL 233
++ ++E G +PFDVAEAE E+ GPL EYSG L + + + +K+ + FV+L L
Sbjct: 196 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLKQVVMASLFVAL-FL 254
Query: 234 PL--VPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIV 291
P + A L +L++ LL L ++ + + E T AR R + + + +
Sbjct: 255 PFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRF-------LLIHHVTWLG 307
Query: 292 FAMSFLGW 299
F+++ L W
Sbjct: 308 FSLAALAW 315
>pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
PAB1893 [similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458145|emb|CAB49634.1| (AJ248285) CO-induced
hydrogenase related, subunit K [Pyrococcus abyssi]
Length = 321
Score = 122 bits (303), Expect = 5e-27
Identities = 98/314 (31%), Positives = 151/314 (47%), Gaps = 27/314 (8%)
Query: 6 ILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIP-TRNWLFKL 64
IL V + GI RK+ AR+Q R GPP++Q +YD +KL+S ++IP T N++F+
Sbjct: 11 ILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANFMFRA 70
Query: 65 YPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGS 124
P L + I P G ++IVF Y + + FL+L S + + +G+
Sbjct: 71 APVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGA 130
Query: 125 AREMMLILTVEP-----LLAIVYGILAYNAGS-LDIGEIISN--LHLTPSLIVAYAILAY 176
ARE+ ++++ EP + A+++GI +G + + L P + VA IL Y
Sbjct: 131 AREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIY 190
Query: 177 ------SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL 230
+ +E GF F++ EAE E+ G L EYSGR LGI A IK F SL
Sbjct: 191 VFMSWLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF----IAASL 244
Query: 231 VVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEAT-----NARLRIDQVAKVN-VRL 284
VV L P + ++ LL+ A ++ + T RL+I Q + R+
Sbjct: 245 VVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRV 304
Query: 285 FFASIIVFAMSFLG 298
F ASI+ + LG
Sbjct: 305 FAASIVGALLLALG 318
>pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1439
[similarity] - Pyrococcus horikoshii
>gi|3257863|dbj|BAA30546.1| (AP000006) 321aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 321
Score = 121 bits (301), Expect = 9e-27
Identities = 94/299 (31%), Positives = 152/299 (50%), Gaps = 27/299 (9%)
Query: 21 GIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIP-TRNWLFKLYPYLAFASAIVAALL 79
GI RK+ AR+Q R GPP++Q +YD +KL+S ++IP T N++F+ P L A+ I
Sbjct: 26 GIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANFMFRAAPILMLATVIALLAY 85
Query: 80 LPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVEP--- 136
P G ++IVF Y + + FL+L S + + +G+ARE+ ++++ EP
Sbjct: 86 TPLGFPPLFATKGDIIVFIYLLTLADFFLILGVISSGSPYGKIGAAREVAMLISREPAMM 145
Query: 137 --LLAIVYGI------LAYNAGSLDIGEI--ISNLHLTPSLIVAYAILAY-SMYVESGFV 185
+ ++++GI ++ GSL I + + +I+ Y +A+ + +E GF
Sbjct: 146 LGVFSVMWGISKLGVKRPFSLGSLYEHNIWELGPMVWVAGIILIYVFMAWLASEIEVGF- 204
Query: 186 PFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITTQAKAL 245
F++ EAE E+ G L EYSGR LGI A IK F SLVV L P + +
Sbjct: 205 -FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF----IATSLVVAVLFPWQVRIPGI 259
Query: 246 LALLLQLLL-TLALYPVI----ASLEATNARLRIDQVAKVN-VRLFFASIIVFAMSFLG 298
+ L++ TL ++ V+ RLRI Q + R+F AS++ + LG
Sbjct: 260 EGYITNLMIHTLKVFIVLFIAKTVFRTVTGRLRITQAVNLLWTRVFAASVVGALLLVLG 318
>pir||T51315 probable CO-induced hydrogenase complex chain CooK [imported] -
Rhodospirillum rubrum >gi|1515467|gb|AAC45117.1|
(U65510) CooK [Rhodospirillum rubrum]
Length = 323
Score = 113 bits (281), Expect = 2e-24
Identities = 96/302 (31%), Positives = 155/302 (50%), Gaps = 35/302 (11%)
Query: 19 LDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNWL--FKLYPYLAFASAIVA 76
L G R+V AR+Q R G PL+Q +YD++KL++ +++P L F + P L AS VA
Sbjct: 31 LKGFDRRVFARLQRRVGAPLLQPFYDVLKLMTKRTLVPENANLVVFLMVPLLGLASMGVA 90
Query: 77 ALLLPYGGVI-PLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVE 135
A ++P G+ P +L+V FY + + +V LMLAG + + F +G +REM ++L E
Sbjct: 91 AAMIPIPGLYDPSPAFGDLLVLFYLLSVPAVMLMLAGSASGSPFGGIGFSREMAIMLAYE 150
Query: 136 PLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAY---------------AILAYSMYV 180
+ +V +A G+ +G+ I L+ S IV Y A+L Y ++
Sbjct: 151 GPILLVIVSVALKTGAA-LGQPIC---LSLSEIVRYQQAHGAYLFDPWMWPAVLTYIAFI 206
Query: 181 ES--GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPI 238
+ G PFD+ EAE+EV+ GPL EYSG LG+ +K ++ + ++ P P
Sbjct: 207 PANLGISPFDIPEAESEVLEGPLIEYSGVALGLLKLTSAVKSVVVIGLGI-VLFFPNGP- 264
Query: 239 TTQAKALLALLLQLLLTLALYPV-IASLEATNARLRIDQVAKVNVR----LFFASIIVFA 293
+ L L++ L L + ++ L A R+RIDQ ++ L AS+ + A
Sbjct: 265 ----EGLFGLVVFALKCLVITVCGVSVLRAAVGRMRIDQAVIFYLKWPELLGIASLALVA 320
Query: 294 MS 295
M+
Sbjct: 321 MN 322
>pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB0492
[similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458136|emb|CAB49625.1| (AJ248285) NADH
dehydrogenase I, subunit H [Pyrococcus abyssi]
Length = 309
Score = 96.3 bits (236), Expect = 4e-19
Identities = 87/293 (29%), Positives = 135/293 (45%), Gaps = 20/293 (6%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
+I IL L F+ GI RKV AR+ R GPP+ Q D +KL + T
Sbjct: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-THGV 62
Query: 61 LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS 120
+F A + I+A + +P G + L+ +LI+ + + + + +M A S N ++
Sbjct: 63 IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
Query: 121 HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII--------SNLHLTPSLI--VA 170
+G+ R ++ +L ++ L LA G+ EI+ S HL P L+ +A
Sbjct: 123 GIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL-PLLLAAIA 181
Query: 171 YAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL 230
Y I+ +M+ G PFD+ A E+ GP+ E+ G+ LGI I FA FF S
Sbjct: 182 YDIVLQAMF---GKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF-SN 237
Query: 231 VVLPLVPITTQAKALLALL----LQLLLTLALYPVIASLEATNARLRIDQVAK 279
+ L ITT + +L L + L+ LA+ V + R IDQ AK
Sbjct: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
>emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related protein
[Thermoplasma acidophilum]
Length = 340
Score = 89.7 bits (219), Expect = 4e-17
Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 43/302 (14%)
Query: 2 IAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVI 55
+ F ++AL +++ I RK AR+Q R GP L+Q D +KL+ S+I
Sbjct: 26 LIFVVVALIAMIY-------IFRKYMARLQLRIGPNRVGKFGLLQLIADALKLVGKESII 78
Query: 56 PTR--NWLFKLYPYLAFASAIVAALLLPYGGVIPL------KLGYNLIVFFYAILMVSVF 107
P ++ +K PY+ F +V +L+PYG + +LI+FF AI M+ +
Sbjct: 79 PKLRDDFAYKAAPYIVFIGLVVGFVLIPYGSFYWIGSLTITHSNVSLILFFGAIAMMPIG 138
Query: 108 LMLAGFSVQNAFSHLGSAREMMLILTVE-PLLAIVYGIL----AYNAGSLDIGEIISNLH 162
+LAG S N ++ +G+ R + ++ E P++ ++ A + L+ ++S
Sbjct: 139 EVLAGISSHNKYAVIGAFRGIAKDVSFEVPMMISAVSLVMMDSALSRTPLNFETLVSTQF 198
Query: 163 LTPSLIVAYAILAY--SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKR 220
+ ++ + + +M S + PFD++E+++E++ G EYSG G+FY +
Sbjct: 199 IPFGILQPLGLFVFMVAMIARSSYTPFDLSESDSEIVSGYSTEYSGMRFGLFYMGM---- 254
Query: 221 FALLWFFVSLVVLPLV------PITTQAKALLALLLQLLLTLALYPVIASLEATNARLRI 274
F + F SLVV L P ++ A + L+ L+L L + + S+ R+R+
Sbjct: 255 FGSI-FLGSLVVSLLYLGGFNGPYSSYAGFIYLLIKGLILVLISFLIWLSM----PRIRV 309
Query: 275 DQ 276
D+
Sbjct: 310 DR 311
>emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri]
Length = 285
Score = 88.9 bits (217), Expect = 7e-17
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 26/260 (10%)
Query: 6 ILALGIVLFLPPYL----DGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNWL 61
IL + +VL P + GI RK+ AR+Q R GPPL+Q +YD+ KLLS +++ +
Sbjct: 4 ILTIILVLIGAPIIGCLASGIDRKITARLQGRVGPPLLQPYYDVKKLLSKDNMVVNPSQN 63
Query: 62 FKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSH 121
F + YLAF I+ +L + + K + +I+F Y + SV L++ G S + ++
Sbjct: 64 FYVVVYLAF---IILSLFM-----LVFKQDFLMIIFVYTV--ASVALVVGGMSTGSPYAR 113
Query: 122 LGSAREMMLILTVEPLLAIVYGILAY-NAGSLDIGEIISN----LHLTPSLIVAYAILAY 176
+GS+RE+M IL+ EP+L I+Y + Y G+ + ++ L TP + +A ++
Sbjct: 114 IGSSREIMAILSYEPVL-ILYALAIYLLTGTFKLSALLDASSPLLMYTPLIFIAMIVVLN 172
Query: 177 SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVL--P 234
+S F E+I G EY G + I I F F L+ L
Sbjct: 173 IKLKKSPFDYSTSHHGHQELIKGMTTEYGGP----GFATIEIAHFYEYVFLTGLIFLFWA 228
Query: 235 LVPITTQAKALLALLLQLLL 254
P+ ++A LL +++
Sbjct: 229 STPVIGVLIGIIAYLLVIVI 248
>pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB1393
[similarity] - Aeropyrum pernix (strain K1)
>gi|5105104|dbj|BAA80418.1| (AP000061) 383aa long
hypothetical NADH dehydrogenase (ubiquinone) chain 1
[Aeropyrum pernix]
Length = 383
Score = 88.2 bits (215), Expect = 1e-16
Identities = 89/330 (26%), Positives = 146/330 (43%), Gaps = 45/330 (13%)
Query: 6 ILALGIVLFLPPYLDGIARKVKARIQHRRGP--------PLMQTWYDLVKLLSIPSVIPT 57
IL G L + RK AR+Q R GP L+ D+++ + +IP
Sbjct: 29 ILGFGGALLIAIVAVWFERKAAARVQRRIGPYWASPRLGGLLHLVADMMRYMFQQVIIPR 88
Query: 58 RNWLFKLYPYLAFASAIVAALLLPYGGVIPLK------------LGYNLIVFFYAILMVS 105
+P+L +A +LP+ V+PL + Y+L++ +
Sbjct: 89 T---VDYFPFLVAPIVGMAVSILPFA-VVPLTANPSYWPLPPGLMEYSLLLALAISTLPP 144
Query: 106 VFLMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN----- 160
+FL++AG++ N F+ +G RE +IL E + + A GS +I EI+
Sbjct: 145 IFLIVAGWAANNPFTIVGGVREAFIILAYELIAILSLLAPAITVGSFNIVEIVQAQGFFK 204
Query: 161 --LHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHI 218
+ L P +A A++A +M + PF++ E+E EV+ GP EYSG L + ++
Sbjct: 205 WFIILNPLAFLA-AVIAIAMSTSA--FPFEIPESEPEVVAGPFTEYSGILYALNMGGAYM 261
Query: 219 KRFALLWFFVSLVVL----PLVPITTQAKALLALLLQLLLTLALYPV-IASLEATNARLR 273
+RFA SLV+L P+VP L L ++ AL + I+ L A R R
Sbjct: 262 RRFAFS-LIASLVLLGGWYPVVPGEGVVMGYLLPSLVVVAKAALVTLAISFLRAVYGRYR 320
Query: 274 IDQVAKVNVRL-----FFASIIVFAMSFLG 298
+DQ + RL A ++ ++LG
Sbjct: 321 LDQALDLAWRLVLPLTLLAILLALIEAYLG 350
>pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 TM1213
[similarity] - Thermotoga maritima (strain MSB8)
>gi|4981766|gb|AAD36288.1|AE001778_9 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 293
Score = 87.8 bits (214), Expect = 1e-16
Identities = 72/253 (28%), Positives = 115/253 (44%), Gaps = 29/253 (11%)
Query: 9 LGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNWLFKLYPYL 68
L + FL L+GIARK+ AR+Q R GPP Q + D+ K LS + W+F +
Sbjct: 8 LVLAFFLVLSLEGIARKIVARVQRRIGPPWYQNFIDVFKALSKHPF--SNGWVFDFGVLM 65
Query: 69 AFASAIVAALLLPYGGV--IPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAR 126
A ++ A+L+P G + P N V Y + ++ + + N ++ +G +R
Sbjct: 66 ALGGSVATAMLMPLGSLKWTPFPNTDNFFVITYLFTVGALGMAMGMVGSGNPWASIGISR 125
Query: 127 EMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS------NLHLTP-SLIVAYAILAYSMY 179
+ +L E +V + +N + I ++I+ NL P IVA+ L M
Sbjct: 126 ALTQMLGYELPFLVVMASVIFNYKTASIHQLITFQGEKWNLFSMPLGAIVAFISLIGMM- 184
Query: 180 VESGFVPFDVAEAETEVIGGPLAEYSGRLLGI------FYYAIHIKRF--------ALLW 225
G PFD+A A E+ GP+ E SG+ LG+ F + I F +L W
Sbjct: 185 ---GKKPFDIAIAPAEIASGPMVELSGKYLGLLQIMHDFSLFVEISLFVNVFLGGGSLGW 241
Query: 226 FFVSLVVLPLVPI 238
F V V + +V +
Sbjct: 242 FLVKFVTVWVVAV 254
>pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1450
[similarity] - Pyrococcus horikoshii
>gi|3257874|dbj|BAA30557.1| (AP000006) 309aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 309
Score = 87.4 bits (213), Expect = 2e-16
Identities = 77/273 (28%), Positives = 126/273 (45%), Gaps = 20/273 (7%)
Query: 21 GIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNWLFKLYPYLAFASAIVAALLL 80
GI RK ARI R GPP+ Q D +KL + I T ++ A + I+A + +
Sbjct: 24 GIIRKTVARIHRRIGPPIYQPIIDTIKLFAKKENI-THGVIYDFGVVFALGATILALMFI 82
Query: 81 PYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVEPLLAI 140
P G V L+ +LI+ + + + + +M A S N ++ +G+ R ++ +L V+ L
Sbjct: 83 PLGNVSVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAVQVPLGF 142
Query: 141 VYGILAYNAGSLDIGEII--------SNLHLTPSLI--VAYAILAYSMYVESGFVPFDVA 190
L G+ EI+ S HL P L+ +AY I+ +M+ G PFD+
Sbjct: 143 AIVTLGEYYGTFSTYEIVMAQQLHGWSIFHL-PLLLAAIAYDIVLQAMF---GKEPFDIM 198
Query: 191 EAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITTQAKALL---- 246
A E+ GP+ E+ G+ LGI I FA FF S + L +T + ++L
Sbjct: 199 IAPGEISLGPMVEFGGKHLGILQVQHAIGLFAETLFF-SNIFLGGAAVTAFSSSILNTLA 257
Query: 247 ALLLQLLLTLALYPVIASLEATNARLRIDQVAK 279
+ + L+ L + + + R IDQ A+
Sbjct: 258 TITILLIKQLVVLFIAIFISTIFPRFTIDQAAE 290
>gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina]
>gi|10444170|gb|AAG17744.1|AF288090_20 (AF288090) NADH
dehydrogenase subunit 1 [Rhodomonas salina]
Length = 328
Score = 85.4 bits (208), Expect = 7e-16
Identities = 75/308 (24%), Positives = 145/308 (46%), Gaps = 23/308 (7%)
Query: 12 VLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPT--RNWLFK 63
VL YL + RKV A +Q RRGP L+Q + D +KLL +++P+ ++F
Sbjct: 21 VLIAVAYLTLLERKVMASMQQRRGPNVVGFFGLLQPFADGLKLLIKETILPSSANTFIFI 80
Query: 64 LYPYLAFASAIVAALLLPYGGVIPLKLGYNL-IVFFYAILMVSVF-LMLAGFSVQNAFSH 121
P F ++++ ++P+G + + L +N+ ++ +AI + V+ ++LAG+S + +S
Sbjct: 81 FAPIFTFLLSLLSWCVIPFG-IDCVFLDFNIGVLIIFAISSLGVYGVVLAGWSSNSKYSF 139
Query: 122 LGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLHLTPSLIVAYAILAYSM 178
LG R +++ E + ++ + AGSL++ +II +++ L + + S
Sbjct: 140 LGGLRSAAQMISYEVSIGLLIMPVLICAGSLNLSKIIEAQNDVFYIIPLFPVFIMFFISA 199
Query: 179 YVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPI 238
E+ PFD+ EAE E++ G EYS +F+ + + + VP+
Sbjct: 200 LAETNRAPFDLPEAEAELVSGFNTEYSAMAFALFFLGEYSNIILICSVTTIFFLGGWVPV 259
Query: 239 TTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRL---------FFASI 289
+ + ++ L T L + A R R DQ+ ++ ++ FF S
Sbjct: 260 FSFLNFIPGVVWFGLKTTFLLFAFIWVRAAFPRYRYDQLMRLGWKIFLPFSLGWVFFVSG 319
Query: 290 IVFAMSFL 297
+F + +L
Sbjct: 320 FLFGLDYL 327
>gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit FpoH [Methanosarcina mazei]
Length = 347
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/326 (26%), Positives = 147/326 (44%), Gaps = 43/326 (13%)
Query: 9 LGIVLFLPPYLDGIA-----RKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPT 57
+G+VL +L G+A RK+ A IQ R GP L+Q D +KL + V P
Sbjct: 20 VGLVLVGAIFLGGMAAVWIERKLSADIQLRYGPSRVGKFGLLQLVADAIKLFTKEDVRPG 79
Query: 58 R--NWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNL--------IVFFYAILMVSVF 107
+L+ P S + + +P G V Y L I+F A+ +++F
Sbjct: 80 NADRFLYDNAPVFMLTSLFLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVSAINIF 139
Query: 108 -LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDI-------GEIIS 159
+ +A + N +S LG+ R ++ E L I +A GSL+I G +
Sbjct: 140 GIFMAAYGSNNKYSLLGAFRNFARMIGYEVPLGIAIVSVAVMTGSLNIIDITSAQGSFVW 199
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK 219
N+ L P + + + ++ + G +PFD E+E E++ G + EY+G G+ ++A ++
Sbjct: 200 NIFLQP---IGFVVFFIALMADLGRLPFDQNESEEELVAGWVTEYTGMRFGLVFFAEYM- 255
Query: 220 RFALLWFFVSLVVLP--LVPITTQAKALLALL----LQLLLTLALYPVIASLEATNARLR 273
L F V+L+ L VP A+L L+ + LL T+ + I + R R
Sbjct: 256 HMILGSFLVALLFLGGWNVPAFVANNAVLGLIAPTGILLLKTVLVLMTIIGMRWAVPRFR 315
Query: 274 IDQVAKVNVRLFFASIIVFAMSFLGW 299
IDQV V + + ++ ++ L W
Sbjct: 316 IDQV----VDMSWKKLLPLSLLNLAW 337
>emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans]
Length = 352
Score = 84.3 bits (205), Expect = 2e-15
Identities = 77/306 (25%), Positives = 144/306 (46%), Gaps = 36/306 (11%)
Query: 24 RKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASAIV 75
RK A +Q R GP L+Q + D +KLL + PT+ LF L P + +++
Sbjct: 29 RKTMASMQRRLGPNAVGYYGLLQAFADALKLLLKEYIAPTQANILLFFLGPIITLIFSLL 88
Query: 76 AALLLPYGGVIPLKLGYNL-IVFFYAILMVSVF-LMLAGFSVQNAFSHLGSAREMMLILT 133
L++P+G + + YNL I++ A+ ++ + ++LAG+S + ++ LGS R +++
Sbjct: 89 GYLVIPFGSGLDIS-DYNLGILYMLAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLIS 147
Query: 134 VEPLLAIVYGILAYNAGSLDIGEIISN---LHLTPSLIVAYAILAYSMYVESGFVPFDVA 190
E +L+ V ++ GSL+I II + ++L L + + E+ PFD+A
Sbjct: 148 YELILSSVILLVILLTGSLNIITIIESQRVVNLLFPLFPLFLVFFIGSIAETNRAPFDLA 207
Query: 191 EAETEVIGGPLAEYSGRLLGIFYYAIH--------IKRFALLWFFVSLVVLPLVP----- 237
EAE+E++ G + E+S + F+ A + + L ++S++ L +
Sbjct: 208 EAESELVSGFMTEHSASIFVFFFLAEYASIVLICILNSILFLGGYLSIIPLDFIVNILNL 267
Query: 238 -ITTQAKALLALLLQL--------LLTLALYPVIASLEATNARLRIDQVAKVNVRLFFAS 288
+ T L + + + L T L V + A+ R+R DQ+ V +
Sbjct: 268 FVITNNTILFDIFVHISSSPINLALKTAFLIFVFIWVRASFPRIRFDQLMSVCWTVLLPI 327
Query: 289 IIVFAM 294
II + +
Sbjct: 328 IIAYVV 333
>gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880799|gb|AAD54892.1|AF137379_115
(AF137379) subunit 1 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 362
Score = 84.3 bits (205), Expect = 2e-15
Identities = 81/290 (27%), Positives = 127/290 (42%), Gaps = 40/290 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ RK+ A +Q R GP L+Q D +KL+ V+P ++ WLF L P +
Sbjct: 53 LERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFKEDVVPAKSDTWLFTLGPAVVVIPI 112
Query: 74 IVAALLLPYGG---VIPLKLGYNLIVFFYAILMVS-VFLMLAGFSVQNAFSHLGSAREMM 129
+A L++P+G + L++G I F+ AI ++ + L+++G+ N +S LG R
Sbjct: 113 FLAYLVVPFGQQLIIADLRIG---IFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAA 169
Query: 130 LILTVEPLLAIVYGILAYNAGSLDIGEIIS----------NLHLTPSLIVAYAILAYSMY 179
++ E LAI + A SL +I+ N+ P VA+ I A +
Sbjct: 170 QSISYELPLAICVLSVCLLADSLSTVDIVESQSSWGILTWNIWRQPIGFVAFLIAALA-- 227
Query: 180 VESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLV-------- 231
E +PFD+ EAE E++ G EY+G G+FY ++ F L
Sbjct: 228 -ECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYVGSYVNLLVSGCFVTVLYLGGWHGPF 286
Query: 232 ----VLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
+LP P A L + LL T T R+RIDQ+
Sbjct: 287 AIDGILPDSPPFQVLDAFLGITWTLLKTFLFLFAAILTRWTLPRVRIDQL 336
>emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidopsis thaliana]
Length = 325
Score = 84.3 bits (205), Expect = 2e-15
Identities = 87/325 (26%), Positives = 154/325 (46%), Gaps = 39/325 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 3 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 59
Query: 50 SIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSV 106
+ P+ +LF++ P F ++VA ++P+ G++ L L+ + +AI + V
Sbjct: 60 LKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLL-YLFAISSLGV 118
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS------ 159
+ +++AG+S + ++ LG+ R +++ E + ++ + GS ++ EI+
Sbjct: 119 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIW 178
Query: 160 -NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA 215
+ L P L++ + S E+ PFD+ EAE E++ G EYS +F+ YA
Sbjct: 179 FGIPLFPVLVMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGSALFFLGEYA 234
Query: 216 IHIKRFALLWFFVSLVVLPL--VPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
I L F LP+ +PI + L+ +++L L LY + A R R
Sbjct: 235 NMILMSGLCTLFFLGGWLPILDLPIFKKIPGLIWFSIKVLFFLFLY---IWVRAAFPRYR 291
Query: 274 IDQVAKVNVRLFFASIIVFAMSFLG 298
DQ+ + ++F + + +S G
Sbjct: 292 YDQLMGLGWKVFLPLSLAWVVSVSG 316
>pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Arabidopsis
thaliana mitochondrion >gi|572521|emb|CAA57940.1|
(X82618) mitochondrial NADH dehydrogenase [Arabidopsis
thaliana]
Length = 325
Score = 82.7 bits (201), Expect = 5e-15
Identities = 86/325 (26%), Positives = 153/325 (46%), Gaps = 39/325 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 3 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 59
Query: 50 SIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSV 106
+ P+ +LF++ P F ++VA ++P+ G++ L L+ + +AI + V
Sbjct: 60 LKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLL-YLFAISSLGV 118
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS------ 159
+ +++AG+S + ++ LG+ R +++ E + ++ + GS ++ EI+
Sbjct: 119 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIW 178
Query: 160 -NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA 215
+ L P L++ + S E+ PFD+ EAE E++ G EYS +F+ YA
Sbjct: 179 FGIPLFPVLVMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYA 234
Query: 216 IHIKRFALLWFFVSLVVLPL--VPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
I L F LP+ +PI + + +++L L LY + A R R
Sbjct: 235 NMILMSGLCTLFFLGGWLPILDLPIFKKIPGSIWFSIKVLFFLFLY---IWVRAAFPRYR 291
Query: 274 IDQVAKVNVRLFFASIIVFAMSFLG 298
DQ+ + ++F + + +S G
Sbjct: 292 YDQLMGLGWKVFLPLSLAWVVSVSG 316
>pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - garden
petunia mitochondrion
Length = 325
Score = 81.9 bits (199), Expect = 8e-15
Identities = 82/325 (25%), Positives = 153/325 (46%), Gaps = 39/325 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 3 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 59
Query: 50 SIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSV 106
+ P+ +LF++ P F ++VA ++P+ G++ L L+ + +AI + V
Sbjct: 60 LKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLL-YLFAISSLGV 118
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS------ 159
+ +++AG+S + ++ LG+ R +++ E + ++ + GS ++ EI+
Sbjct: 119 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIW 178
Query: 160 -NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHI 218
+ L P L++ + S E+ PFD+ EAE E++ G EYS +F+ +
Sbjct: 179 FGIPLFPVLVMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYA 234
Query: 219 KRFALLWFFVSLVV---LPL--VPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
+ SL + LP+ +PI + + ++++ L LY + A R R
Sbjct: 235 NMILMSGLCTSLFLGGWLPILDLPIFKKIPGSIWFSIKVIFFLFLY---IWVRAAFPRYR 291
Query: 274 IDQVAKVNVRLFFASIIVFAMSFLG 298
DQ+ + ++F + + +S G
Sbjct: 292 YDQLMGLGWKVFLPLSLAWVVSVSG 316
>gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea]
>gi|7636167|emb|CAB88789.1| (AJ400848) NADH
dehydrogenase ND1 subunit [Spinacia oleracea]
Length = 365
Score = 81.9 bits (199), Expect = 8e-15
Identities = 67/232 (28%), Positives = 115/232 (48%), Gaps = 23/232 (9%)
Query: 6 ILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN 59
IL LGI + + + + R++ A IQ R GP ++Q D KLL +++P+R
Sbjct: 37 ILVLGITIGVLVIV-WLEREISASIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRG 95
Query: 60 --WLFKLYPYLAFASAIVAALLLPYGGVIPLK-LGYNLIVFFYAILMVSVFLMLAGFSVQ 116
+LF + P +A S ++ L++P+G + L L + ++ + + L+++G+
Sbjct: 96 DTYLFSIGPSIAVISILLGYLIIPFGSRLVLADLSIGVFLWIAVSSIAPIGLLMSGYGSN 155
Query: 117 NAFSHLGSAREMMLILTVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPS 166
N +S LG R ++ E PL V I L+ ++ ++DI E S NL P
Sbjct: 156 NKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTVDIVEAQSKYGFWGWNLWRQP- 214
Query: 167 LIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHI 218
+ + + S E +PFD+ EAE E++ G EYSG G+FY A ++
Sbjct: 215 --IGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYL 264
>pir||D70749 probable hycD protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405754|emb|CAA98920.1| (Z74410) hycD [Mycobacterium
tuberculosis]
Length = 316
Score = 81.5 bits (198), Expect = 1e-14
Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 17/297 (5%)
Query: 9 LGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNWL-FKLYPY 67
+G V+ P + G+ R+V+AR + R G L+Q W DL+K L + P + F P
Sbjct: 10 IGGVMVGAPLVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPV 69
Query: 68 LAFASAIVAALLLPYGGV-IPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAR 126
+ + ++ A + P PL +L + + +V L LAG +F +G++R
Sbjct: 70 IVAGTTLLIAAIAPLVATGSPLDPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASR 129
Query: 127 EMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIV------AYAILAYSMYV 180
E+ + VEP + + L+ AGS ++G ++++ P +V A+ L +
Sbjct: 130 EITIAALVEPTILLAVFALSIPAGSANLGALVASTIDHPGHVVSLAGVLAFVALVIVIVA 189
Query: 181 ESGFVPFDVAEAETE---VIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVP 237
E+G +P D E V + EY+G L + +A ++ LL +L LP
Sbjct: 190 ETGRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANL-FLPW-G 247
Query: 238 ITTQAKALLALLLQLLLTLALYPVIASLEAT----NARLRIDQVAKVNVRLFFASII 290
I A L +L ++ A ++A L AT A+LR+ +V ++ F +++
Sbjct: 248 IAGAAPTALDVLTGVVAVAAKVAILAVLLATFEVFLAKLRLFRVPELLAGSFLLALL 304
>gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas americana]
>gi|7431897|pir||S78136 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258335|gb|AAD11869.1|
(AF007261) NADH dehydrogenase, subunit 1 [Reclinomonas
americana]
Length = 333
Score = 81.1 bits (197), Expect = 1e-14
Identities = 81/301 (26%), Positives = 151/301 (49%), Gaps = 31/301 (10%)
Query: 9 LGIVLFL---PPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTR- 58
LG+VL L YL + RKV A +Q R+GP L+Q D +KLL +++PTR
Sbjct: 12 LGLVLPLLICVAYLTLLERKVIAAMQQRKGPNVVGVFGLLQPLADGLKLLLKETIVPTRA 71
Query: 59 -NWLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVF-LMLAGFSV 115
+ +F L P L F ++V+ ++P G++ L L+ + ++ + V+ ++ +G+S
Sbjct: 72 NSAIFILAPILTFMLSLVSWAVIPIDDGMVIADLNIGLL-YILSVSSLGVYGIITSGWSS 130
Query: 116 QNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII----SNLHLTPSLIVAY 171
+ ++ LGS R +++ E + ++ + AGSL++ +I+ S ++ P L +
Sbjct: 131 NSKYAFLGSLRSAAQMVSYEVSIGLIIITVLMCAGSLNLTQIVRCQESMWYIIP-LFPLF 189
Query: 172 AILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA---IHIKRFALLW 225
+ S+ E+ PFD+ EAE E++ G EYS +F+ YA + +L+
Sbjct: 190 VMFFISILAETNRSPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYANMILMCSMCTILF 249
Query: 226 FFVSLVVLPLVPITTQAKAL-LALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRL 284
L L ++P T ++ L + LL + ++ + AT R R DQ+ ++ ++
Sbjct: 250 LGGWLAPLNILPFTLIPGSIWFGLKVVFLLFVFIW-----VRATFPRYRYDQLMRLGWKI 304
Query: 285 F 285
F
Sbjct: 305 F 305
>pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
dermatophytic fungus (Trichophyton rubrum) mitochondrion
>gi|3947743|emb|CAA77189.1| (Y18476) NADH dehydrogenase
subunit 1 [Trichophyton rubrum]
Length = 343
Score = 80.8 bits (196), Expect = 2e-14
Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 32/312 (10%)
Query: 13 LFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRNWLFKLY- 65
L + +L RK A +Q R G L+Q + D +KLL V PT+ + L+
Sbjct: 18 LLIVAFLTISERKTMASMQRRLGQNIVGYYGLLQAFADALKLLLKEYVAPTQANIILLFL 77
Query: 66 -PYLAFASAIVAALLLPYGGVIPLKLGYNL-IVFFYAILMVSVF-LMLAGFSVQNAFSHL 122
P + +++ ++PYG + + +NL I++ A+ ++ + ++LAG+S + ++ L
Sbjct: 78 GPIITLIFSLLGYRVIPYGSGLFIS-DFNLGILYILAVSSLATYGILLAGWSANSKYAFL 136
Query: 123 GSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LHLTPSLIVAYAILAYSMY 179
GS R +++ E LL ++ GSL++ II + ++ L+ + I
Sbjct: 137 GSLRSTAQLISYELLLRFYILLVILFTGSLNLTTIIESQKVVYFILPLLPIFLIFFIGCI 196
Query: 180 VESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLV----VLPL 235
E+ PFD+AEAE+E++ G + E+S + IF++ L+ S++ L +
Sbjct: 197 AETNRAPFDLAEAESELVSGFMTEHSAVIFMIFFFLAQYASIVLICILSSVLFLGGYLNI 256
Query: 236 VPITTQ-------------AKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNV 282
+P+ T L +L L + ++ V + A+ R+R DQ+ V
Sbjct: 257 LPLNTYNVCDFNSLFSDYLINGLSSLNLAIKTAFLIF-VFIWVRASFPRIRFDQLMSVCW 315
Query: 283 RLFFASIIVFAM 294
+ II + +
Sbjct: 316 TILLPIIIAYVV 327
>emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 328
Score = 80.0 bits (194), Expect = 3e-14
Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 47/331 (14%)
Query: 1 MIAFTI-LALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPS 53
+I F + L + I+L LP L + RK+ +Q R GP L+Q D +KLL+
Sbjct: 9 VIVFKVALVIAILLLLPLPLTWLERKIAGHMQQRMGPMRVGWHGLLQPVADGIKLLTKED 68
Query: 54 VIPTR--NWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNL----------IVFFYAI 101
IP +LFKL P LA A V +P+G + + LG + ++F +A+
Sbjct: 69 HIPAEADRFLFKLAPILALAPPFVVFAAIPFGESVSV-LGNEITLYISNLNVALLFVFAV 127
Query: 102 LMVSVF-LMLAGFSVQNAFSHLGSAREMMLILTVE-PLLAIVYGI--LAYNAGSLDIGEI 157
+ + V+ ++ G++ + ++ LGS R +++ E P+ V G+ LA + LDI
Sbjct: 128 IGLEVYGVIFGGWAANSKYAVLGSLRTCAQMISYEIPMGFAVIGVVMLAQSMSLLDIVRA 187
Query: 158 ISNLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIH 217
+++ + + + + E+ +PFD+AEAE ++ G EYSG +F + +
Sbjct: 188 QTDVWNVVYQPIGFFVFFVAGLAEAQRIPFDLAEAEGDLGAGFHTEYSGIRFALFMVSEY 247
Query: 218 IKRFALLWFFVSL-------VVLPLVPITTQAKALLALLLQLLLTLALYPVIAS-LEATN 269
+ + V L V++PL P LL LL +A + + T
Sbjct: 248 VVMVLVSVLTVILFFGGWNGVLIPLPP-----------LLWFLLKVAFFVYLFMWFRFTF 296
Query: 270 ARLRIDQVA----KVNVRLFFASIIVFAMSF 296
R R DQ+ KV + L A+II+ + F
Sbjct: 297 PRYRYDQLMAIGWKVLLPLSLANIIISGVVF 327
>pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain 26695)
>gi|2314432|gb|AAD08311.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO8 subunit (NQO8) [Helicobacter pylori
26695]
Length = 329
Score = 79.6 bits (193), Expect = 4e-14
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 31/237 (13%)
Query: 22 IARKVKARIQHRRGP------PLMQTWYDLVKLLSIPSVIP--TRNWLFKLYPYLAFASA 73
I RKV A Q R GP L+Q D +KL + +IP ++F L P +A SA
Sbjct: 29 IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSA 88
Query: 74 IVAALLLPYGGVIPLKLGYNL----------IVFFYAILMVSVFL-MLAGFSVQNAFSHL 122
V+ +P+ L GY + +FF A+ ++ +LAG + N +S +
Sbjct: 89 FVSMAPIPFFPNFTL-FGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLI 147
Query: 123 GSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLI--------VAYAIL 174
GSAR + +L+ E + + GSL + EI N + + + +A+ +
Sbjct: 148 GSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEI--NHYQSGGFLDWLVFKQPLAFVLF 205
Query: 175 AYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLV 231
+ Y E PFD+ E E E++ G EYSG G+F+ A + FA F +S+V
Sbjct: 206 LIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAHLFAFS-FVISIV 261
>sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|7431892|pir||F71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H RP796 - Rickettsia
prowazekii >gi|3861323|emb|CAA15222.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN H (nuoH) [Rickettsia prowazekii]
Length = 339
Score = 79.6 bits (193), Expect = 4e-14
Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 22/234 (9%)
Query: 1 MIAFTILALGIVLFLPP------YLDGIARKVKARIQHRRGPP------LMQTWYDLVKL 48
M T++AL +V P YL R+V +Q RRGP L+Q D VKL
Sbjct: 9 MFPLTVIALKVVAITIPLILCVAYLTYAERRVIGLMQLRRGPNVVGPFGLLQPIADAVKL 68
Query: 49 LSIPSVIPTR--NWLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVS 105
L +IPT LF L P + F +++ ++P+ GV+ + +++ AI +S
Sbjct: 69 LFKEPIIPTDADKILFILAPIITFVLSLIGWAVIPFSSGVVLADINVG-VLYILAISSLS 127
Query: 106 VF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLT 164
V+ +++AG++ + ++ LG+ R +++ E + +V + G+L++ II
Sbjct: 128 VYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLLTTGTLNLSGIIEAQKTL 187
Query: 165 P-----SLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
P L+ + S+ E+ +PFD+ EAE+E++ G EYS +F+
Sbjct: 188 PWWIDLMLLPMSIVFFISVLAETNRLPFDLPEAESELVAGYNVEYSSMGFALFF 241
>pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain J99)
>gi|4155778|gb|AAD06754.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 329
Score = 79.6 bits (193), Expect = 4e-14
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 31/237 (13%)
Query: 22 IARKVKARIQHRRGP------PLMQTWYDLVKLLSIPSVIP--TRNWLFKLYPYLAFASA 73
I RKV A Q R GP L+Q D +KL + +IP ++F L P +A SA
Sbjct: 29 IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSA 88
Query: 74 IVAALLLPYGGVIPLKLGYNL----------IVFFYAILMVSVFL-MLAGFSVQNAFSHL 122
V+ +P+ L GY + +FF A+ ++ +LAG + N +S +
Sbjct: 89 FVSMAPIPFFPNFTL-FGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLI 147
Query: 123 GSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLI--------VAYAIL 174
GSAR + +L+ E + + GSL + EI N + + + +A+ +
Sbjct: 148 GSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEI--NHYQSGGFLDWLVFKQPLAFVLF 205
Query: 175 AYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLV 231
+ Y E PFD+ E E E++ G EYSG G+F+ A + FA F +S+V
Sbjct: 206 LIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAHLFAFS-FVISIV 261
>gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit 1 [Nephroselmis olivacea]
Length = 329
Score = 79.6 bits (193), Expect = 4e-14
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 1 MIAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKL 48
+IA LGI++ P L G+A RKV +Q R+GP L+Q D +KL
Sbjct: 5 IIAVLCKILGIIV---PLLVGVAYLTLAERKVMGSMQRRKGPNVVGIFGLLQPLADGLKL 61
Query: 49 LSIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSV 106
L V+P+ +F P + F A+VA ++P+G + L +++ +AI + V
Sbjct: 62 LIKEPVLPSNANIIIFLFAPVITFVLALVAWAVIPFGEGLLLADVNVGVLYLFAISSLGV 121
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN----- 160
+ +++AG+S + ++ LG+ R +++ E + ++ + AGSL++ EI+
Sbjct: 122 YGIIMAGWSSNSKYAFLGALRSAAQMVSYEVSIGLIIITVLMCAGSLNLSEIVMAQQTIW 181
Query: 161 --LHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
+ L P +I+ Y S E+ PFD+ EAE E++ G EYS +F+
Sbjct: 182 YCIPLFPLMILFYI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFF 232
>sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66135|pir||DNWTU1 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - wheat
mitochondrion
Length = 325
Score = 79.2 bits (192), Expect = 6e-14
Identities = 78/303 (25%), Positives = 146/303 (47%), Gaps = 36/303 (11%)
Query: 11 IVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTR 58
I+ + P L G+A RKV A +Q R+GP L+Q D +KL+ + P+
Sbjct: 9 ILCLILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68
Query: 59 N--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVF-LMLAGFS 114
+LF++ P F ++VA ++P+ G++ L L+ + +AI + V+ +++AG+S
Sbjct: 69 ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLL-YLFAISSLGVYGIIIAGWS 127
Query: 115 VQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS-------NLHLTPSL 167
+ ++ LG+ R +++ E + ++ + GS ++ EI+ + L P L
Sbjct: 128 SNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIWFGIPLFPVL 187
Query: 168 IVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA--IHIKRFA 222
++ + S E+ PFD+ EAE E++ G EYS +F+ YA I +
Sbjct: 188 VMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLC 243
Query: 223 LLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNV 282
L F + + +PI+ + + +++LL L LY + A R R DQ+ +
Sbjct: 244 TLLFLGGWLPILDLPISKKIPCSIWFSIKVLLFLFLY---IWVRAAFPRYRYDQLMGLGR 300
Query: 283 RLF 285
++F
Sbjct: 301 KVF 303
>pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion (fragment)
>gi|393384|emb|CAA52038.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 332
Score = 79.2 bits (192), Expect = 6e-14
Identities = 79/299 (26%), Positives = 138/299 (45%), Gaps = 23/299 (7%)
Query: 1 MIAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKL 48
M+A L +++ L P L +A RKV A +Q R GP ++Q + D +KL
Sbjct: 1 MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60
Query: 49 LSIPSVIPTR--NWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSV 106
+ +VIP + LF L P + +++ ++P+G + L I++ AI V V
Sbjct: 61 VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LH 162
+ ++ AG+S + ++ LGS R +++ E +L+ + GS +I II N +
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAIW 180
Query: 163 LTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIF----YYAIHI 218
L+ + I S E+ PFD+ EAE+E++ G E+SG + F Y +I +
Sbjct: 181 FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFFLGEYCSIVL 240
Query: 219 KRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
F +P + + L +++L L + + + AT RLR DQ+
Sbjct: 241 MSTLTAILFFGGYNMPELFVNDTFINLQSIVLGLKTCMFCF-LFVWFRATLPRLRYDQL 298
>gb|AAK40660.1| NADH dehydrogenase subunit H (NuoH) [Sulfolobus solfataricus]
Length = 352
Score = 79.2 bits (192), Expect = 6e-14
Identities = 63/254 (24%), Positives = 115/254 (44%), Gaps = 16/254 (6%)
Query: 37 PLMQTWYDLVKLLSIP-SVIPTRNWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLI 95
P++ + + + IP S IPT+ + +Y + + + I +L+PY + YNLI
Sbjct: 92 PVLVLIFAFLPMALIPISTIPTQGSILSVYHGIFYDTQIHQGILVPYF------IEYNLI 145
Query: 96 VFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIG 155
+ + ++ ++ N F+ +GS RE L ++ + L+ I L +LD+
Sbjct: 146 GIIALESLYPILVIFLAWNTNNRFAIVGSIREAYLSVSYDVLIIISTLALGLEYHTLDVA 205
Query: 156 EIISNLHLTPSLI---VAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIF 212
+I+++ P I +A + +M + S PF++ EAETE++ GP EYSG L +
Sbjct: 206 KIVTSG--IPGFIANPIAAFVFLVAMLIGSSRFPFEIVEAETELVIGPYTEYSGFLFVLT 263
Query: 213 YYAIHIKRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARL 272
++ FV L + +P T A+ + ++ L A R
Sbjct: 264 MAGSYVANLVYAILFVDLFLGGWLPFTGFVGAIFTVFKAAIVVF----FAVFLRAVYGRY 319
Query: 273 RIDQVAKVNVRLFF 286
RIDQ + + + FF
Sbjct: 320 RIDQALRGSWKYFF 333
>sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66136|pir||DNOBU1 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
evening primrose mitochondrion
Length = 331
Score = 78.8 bits (191), Expect = 7e-14
Identities = 84/325 (25%), Positives = 154/325 (46%), Gaps = 39/325 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 9 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 65
Query: 50 SIPSVIPTR-NW-LFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSV 106
+ P+ N+ LF++ P F ++VA ++P+ G++ L L+ + +AI + V
Sbjct: 66 LKEPISPSSANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLL-YLFAISSLGV 124
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS------ 159
+ +++AG+S + ++ LG+ R +++ E + ++ + GS ++ EI+
Sbjct: 125 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIW 184
Query: 160 -NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA 215
+ L P L++ + S E+ PFD+ EAE E++ G EYS +F+ YA
Sbjct: 185 FGIPLFPVLVMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYA 240
Query: 216 --IHIKRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
I + L F + + +PI + + ++++ L LY + A R R
Sbjct: 241 NMILMSGLCTLLFLGGWLPILDLPIFKKIPGSIWFSIKVIFFLFLY---IWVRAAFPRYR 297
Query: 274 IDQVAKVNVRLFFASIIVFAMSFLG 298
DQ+ + ++F + + +S G
Sbjct: 298 YDQLMGLGWKVFLPLSLAWVVSVSG 322
>gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU1C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66138|pir||DELVN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
chloroplast >gi|456521|emb|CAA28139.1| (X04465) ndh1
[Marchantia polymorpha]
Length = 368
Score = 78.8 bits (191), Expect = 7e-14
Identities = 64/238 (26%), Positives = 112/238 (46%), Gaps = 25/238 (10%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
+ + IL LG+ + + L + RK+ A IQ R GP ++Q D +KL +
Sbjct: 31 IFSILILMLGVTIGVL-VLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDI 89
Query: 55 IPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLML 110
+P + WLF + P L ++ L++P+ + L +++ VFF+ + +V + L++
Sbjct: 90 VPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILA-NFSIGVFFWIAVSSVVPLGLLM 148
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS----------N 160
AG+ N +S LG R ++ E LA+ +A + SL +I+ N
Sbjct: 149 AGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIALLSNSLSTVDIVEAQSKYGFLSWN 208
Query: 161 LHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHI 218
L P + + + + E +PFD+ EAE E++ G EYSG FY A ++
Sbjct: 209 LWRQP---IGFIVFFIASLAECERLPFDLPEAEEELVAGYQTEYSGMKFAFFYLASYL 263
>pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion
>gi|393383|emb|CAA52037.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 328
Score = 78.8 bits (191), Expect = 7e-14
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 18/231 (7%)
Query: 1 MIAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKL 48
M+A L +++ L P L +A RKV A +Q R GP ++Q + D +KL
Sbjct: 1 MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60
Query: 49 LSIPSVIPTR--NWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSV 106
+ +VIP + LF L P + +++ ++P+G + L I++ AI V V
Sbjct: 61 VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LH 162
+ ++ AG+S + ++ LGS R +++ E +L+ + GS +I II N +
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAIW 180
Query: 163 LTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
L+ + I S E+ PFD+ EAE+E++ G E+SG + F+
Sbjct: 181 FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFF 231
>gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7431961|pir||F69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 AF1831
[similarity] - Archaeoglobus fulgidus
>gi|2648714|gb|AAB89419.1| (AE000976) F420H2:quinone
oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 369
Score = 78.8 bits (191), Expect = 7e-14
Identities = 67/303 (22%), Positives = 133/303 (43%), Gaps = 26/303 (8%)
Query: 9 LGIVLFLPPYLDGIARKVKARIQHRRGP-----PL---MQTWYDLVKLLSIPSVI--PTR 58
LG++ Y+ RK+ ARIQ R GP P+ +Q D ++ +++
Sbjct: 60 LGVLTLYLLYIVWYERKLTARIQWRVGPLEVARPIRGAIQALADGIRYFFQEAIVHREAH 119
Query: 59 NWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNA 118
F P LAF ++ + +P G + + + + I ++ + ++ G++ +
Sbjct: 120 RPYFVQLPILAFIPVLLPIMFIPAGSAVGIYTPNAIQLTVTFIALIPITIVAIGWASNSR 179
Query: 119 FSHLGSAREMMLILTVEP--LLAIVYGILAYNAGSLDIG----EIISNLHLTPSLIVAYA 172
F+++GS RE + E ++A++ I Y +G + I L P + Y
Sbjct: 180 FAYIGSVREAFMYFAYEVPFIIAVISMIFLYGSGDAYVAVEKQSAIPGALLNPIAFIVYL 239
Query: 173 ILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV 232
I +M + + +PF++ EA+ E+ GP EYSG L G+ + K + + F L +
Sbjct: 240 I---AMLMATSRLPFEIPEADQEIAFGPFVEYSGILFGLVMVLAYEKLYIMTLLFTILFL 296
Query: 233 LP----LVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFAS 288
P+ L + ++ ++ +++ ++ S+ AR R+DQ ++ A
Sbjct: 297 GGWSGIYCPLLGDLNGPLWMFIKTIVVISILVIVRSI---YARYRLDQALRIGWTSMLAL 353
Query: 289 IIV 291
IV
Sbjct: 354 SIV 356
>gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea]
>gi|7431949|pir||T11227 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - red alga (Porphyra purpurea)
mitochondrion >gi|4106939|gb|AAD03106.1| (AF114794) NADH
dehydrogenase subunit 1 [Porphyra purpurea]
Length = 328
Score = 78.4 bits (190), Expect = 1e-13
Identities = 88/331 (26%), Positives = 156/331 (46%), Gaps = 39/331 (11%)
Query: 2 IAFTILA--LGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVK 47
+++TI+ + I+ + P L +A RKV A +Q R+GP L+Q D +K
Sbjct: 1 MSYTIIINIIKIITIIIPLLIAVAYMTLAERKVMAAMQRRKGPNVVGIFGLLQPLADGLK 60
Query: 48 LLSIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPY--GGVIP-LKLGYNLIVFFYAIL 102
L S +V+P+ +F P L F A++A +LP G V L +G +++ AI
Sbjct: 61 LFSKETVLPSSANISIFLAAPVLTFLLAMLAWCVLPLDEGKVFSDLNVG---VLYILAIS 117
Query: 103 MVSVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII--- 158
+ V+ ++ AG+S + ++ LG+ R +++ E + ++ + AG+L++ +I+
Sbjct: 118 SLGVYGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCAGTLNLTQIVLAQ 177
Query: 159 SNLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA 215
N+ L + + S+ E+ PFD+ EAE E++ G EYS +F+ YA
Sbjct: 178 QNIWYIVPLFPVFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYA 237
Query: 216 IHIKRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRID 275
I +L F LPL I + L TL L+ I + A R R D
Sbjct: 238 NMILMCSLTTIFFFGGWLPLFNIPPFYWIPPVIWFGLKTTLLLFGFI-WVRAAFPRYRYD 296
Query: 276 QVAKVNVRLF---------FASIIVFAMSFL 297
Q+ ++ ++F F S ++F+ ++L
Sbjct: 297 QLMRLGWKIFLPLSLGWVLFVSGVLFSFNWL 327
>gb|AAK41289.1| Formate hydrogenlyase subunit 4 (hycD) [Sulfolobus solfataricus]
Length = 320
Score = 78.0 bits (189), Expect = 1e-13
Identities = 74/309 (23%), Positives = 145/309 (45%), Gaps = 13/309 (4%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
++ TI + +V+ L P GI + KA I+ R+GP ++Q +YD++KLL +VI +
Sbjct: 11 IVVLTITQVIVVILLSPLYQGIYDRGKAIIEGRKGPSVLQPYYDIIKLLRKETVISNNSL 70
Query: 61 -LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQN 117
LF PY+ F ++ + ++P +P+ L + A+L + + ++A +
Sbjct: 71 SLFVYAPYIVFGIYLLISFVIPVVYPVPILLTPTVDFLGGALLFSLAAFIKIIASLESGS 130
Query: 118 AFSHLGSAREMMLILTVEPLLAIVYGILAYNAG------SLD-IGEIISNLHLTPSLIVA 170
F LG +R + E L V+ +A G +LD + + +S+ + V+
Sbjct: 131 NFVALGVSRILSFTFLSEATLITVFFGVALITGTNNPYVTLDYVSQSLSHYFQLDHIFVS 190
Query: 171 YAILAYSMYVESGFVPFD-VAEAETEVI-GGPLAEYSGRLLGIFYYAIHIKRFALLWFFV 228
+ ++ E+G +P + +E +I G L EYSG+LL I + +IK++ L +
Sbjct: 191 ISFFMLWLF-ETGKLPVESPGLSEMGMIDDGVLYEYSGKLLAILKWGSYIKQYLLGSVLL 249
Query: 229 SLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFAS 288
++ + P +L+ + + L L + + T A+LR+ +V F S
Sbjct: 250 NVFIFPWFLQVGIIGSLIDIAVMFGKWLLLILISVIINTTLAKLRLFKVQDYLAVAFLLS 309
Query: 289 IIVFAMSFL 297
++ ++ L
Sbjct: 310 LLSLTLTVL 318
>gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiformis]
>gi|10178680|gb|AAG13692.1|AF295546_18 (AF295546) NADH
dehydrogenase subunit 1 [Malawimonas jakobiformis]
Length = 323
Score = 78.0 bits (189), Expect = 1e-13
Identities = 72/312 (23%), Positives = 150/312 (48%), Gaps = 25/312 (8%)
Query: 7 LALGIVLFLPPYLDGIA------RKVKARIQHRRGPPL------MQTWYDLVKLLSIPSV 54
+ + I+ + P L GIA RK+ + +Q R+GP + +Q D +KL ++
Sbjct: 8 IIIKIISIIVPLLLGIAYLTLAERKILSAVQIRKGPNIIGFYGVLQPLADGLKLFLKETI 67
Query: 55 IPTRNWL--FKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVF-LML 110
+P R L F + P L F+ + + ++P+ G++ L I++ +A+ + V+ ++
Sbjct: 68 LPNRANLIIFIIAPILTFSLSFLGWAVIPFNHGLVLADLNIG-ILYLFAVSSLGVYGIIT 126
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII----SNLHLTPS 166
+G++ + ++ LGS R +++ E + ++ + +GSL++ +I+ S ++ P
Sbjct: 127 SGWASNSKYAFLGSLRSTAQMISYEVSIGLILISVLLCSGSLNLTQIVLSQKSVWYMIP- 185
Query: 167 LIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWF 226
L + + S+ E+ PFD+ E E+E++ G EYS +F+ + +
Sbjct: 186 LFPLFVLFFISILAETNRPPFDLPEGESEIVAGYNVEYSSMGSALFFLGEYGNIILMSSL 245
Query: 227 FVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFF 286
V L V + +LA +++L L L+ ++ AT R R DQ+ ++ ++F
Sbjct: 246 CVVLFVGGWLSPIFFLPNILAFSIKVLFFLFLFILV---RATYPRYRYDQLMRLGWKIFL 302
Query: 287 ASIIVFAMSFLG 298
+ F + G
Sbjct: 303 PISLAFVIFISG 314
>gi|11466917 NADH-ubiquinone oxidoreductase subunit 1 [Podospora anserina]
>gi|400638|sp|P19041|NU1M_PODAN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|1334564|emb|CAA38809.1|
(X55026) NADH-ubiquinone oxidoreductase subunit 1
[Podospora anserina]
Length = 367
Score = 77.6 bits (188), Expect = 2e-13
Identities = 65/246 (26%), Positives = 120/246 (48%), Gaps = 19/246 (7%)
Query: 6 ILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLLSIPS 53
I + +VL L P L GIA RK A +Q R GP L+Q + D +KLL
Sbjct: 7 ISLIEVVLVLVPALLGIAYVTIAERKTMASMQRRLGPNFVGYYGLLQAFADALKLLLKEY 66
Query: 54 VIPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LML 110
V PT+ LF L P + +++ ++PYG + + I + A+ ++ + ++L
Sbjct: 67 VAPTQANIILFFLGPVITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLATYGILL 126
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPS---L 167
AG+S + ++ LGS R +++ E +L+ ++ GSL++ I + + L
Sbjct: 127 AGWSANSKYAFLGSLRSTAQLISYELVLSSAILLVIMLTGSLNLSVNIESQRAIWNIFPL 186
Query: 168 IVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFF 227
+ + I E+ PFD+AEAE+E++ G + E++ ++ +F++ L+
Sbjct: 187 LPVFIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAA-VVFVFFFLAEYGSIVLMCIL 245
Query: 228 VSLVVL 233
S++ L
Sbjct: 246 TSILFL 251
>sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|1419474|emb|CAA66944.1| (X98298) ndhA [Arabidopsis
thaliana]
Length = 360
Score = 77.6 bits (188), Expect = 2e-13
Identities = 83/290 (28%), Positives = 138/290 (46%), Gaps = 40/290 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRNW--LFKLYPYLAFASA 73
+ R++ A IQ R GP ++Q D KLL ++ P+R LF + P +A S
Sbjct: 50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISI 109
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
+++ ++P+ + L N+ +F + + + + L+++G+ N +S LG R
Sbjct: 110 LLSYSVIPFSNHLVLA-DLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQS 168
Query: 132 LTVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVE 181
++ E PL V I L+ + ++DI E S NL P + + I S E
Sbjct: 169 ISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP---IGFIIFLISSLAE 225
Query: 182 SGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVL-------P 234
S +PFD+ EAE E+I G EYSG G+FY A ++ + FV+++ L P
Sbjct: 226 SERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYL-NLLISSLFVTVLYLGGWNISSP 284
Query: 235 LVPITT--QAKALLALLLQLLLTLA-----LYPVIASLEATNARLRIDQV 277
+ I Q + A + + +TLA L+ IA+ T RLR+DQ+
Sbjct: 285 YISILELFQRDQIFATTIGIFITLAKTYLFLFVSIAT-RWTLPRLRMDQL 333
>sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|10038843|dbj|BAB12878.1| (AP001118) NADH
dehydrogenase I chain H [Buchnera sp. APS]
Length = 322
Score = 77.6 bits (188), Expect = 2e-13
Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 37/294 (12%)
Query: 6 ILALGIVLFLPPYLDGIARKVKARIQHRRGPPL------MQTWYDLVKLLSIPSVIP--T 57
I L +++F L + R++ A Q+R GP +Q D++K+L IP +
Sbjct: 19 IFILLLIVFSSAMLSIVERRLLAVFQNRYGPNRVGWMGSLQLCADMIKILFKEDWIPPFS 78
Query: 58 RNWLFKLYPYLAFASAIVAALLLPYGG---VIPLKLGYNLIVFFYAILMVSVFLML-AGF 113
R ++F L P +AF S + ++P+ +I L +G I+FF + +SV+ +L AG+
Sbjct: 79 RKFIFVLSPVIAFTSLLCVIPIIPFTSHFVIIDLNIG---ILFFLMMASLSVYAILFAGW 135
Query: 114 SVQNAFSHLGSAREMMLILTVEPLLAI-VYGILAYNAGSLDIGEIISNLHLTPSLIVAYA 172
S N ++ LG+ R + L+ E L + + G++A +GS I +I+++ ++ +
Sbjct: 136 SSNNKYALLGAMRACVQTLSYEVFLGLSLMGVVA-QSGSFKISDIVNSQKYIWNVFPQF- 193
Query: 173 ILAYSMYVESGFV-----PFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFF 227
+ ++ +G PFD E+E E+ G EYSG G+F+ +I +
Sbjct: 194 -FGFLTFLIAGLAVCHRHPFDQPESEQELADGYHIEYSGMKFGLFFIGEYISIITVSSLI 252
Query: 228 VSLV----VLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
V+L + P +P + + +L+++ + L+ +I A R R DQV
Sbjct: 253 VTLFFGGWLGPWIP------SCIWFILKIIFFIFLFILI---RAALPRPRYDQV 297
>gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU1M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
>gi|282795|pir||S25993 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
mitochondrion >gi|404357|gb|AAB27398.1| NADH
dehydrogenase subunit 1=nad1 gene product [Marchantia
polymorpha=liverworts, Peptide Mitochondrial, 328 aa]
>gi|786224|gb|AAC09438.1| (M68929) nad1 [Marchantia
polymorpha]
Length = 328
Score = 77.3 bits (187), Expect = 2e-13
Identities = 79/311 (25%), Positives = 146/311 (46%), Gaps = 35/311 (11%)
Query: 1 MIAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKL 48
+I LGI++ P L G+A RKV A +Q R+GP L+Q D +KL
Sbjct: 5 LIGLVAKILGIII---PLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKL 61
Query: 49 LSIPSVIPTRN--WLFKLYPYLAFASAIVAALLLP--YGGVIP-LKLGYNLIVFFYAILM 103
+ ++P+ ++F + P L F A+ A ++P YG V L +G +++ +AI
Sbjct: 62 MIKEPILPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIG---VLYLFAISS 118
Query: 104 VSVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---S 159
+ V+ ++ AG++ + ++ LG+ R +++ E + ++ + AGS + EI+ +
Sbjct: 119 LGVYGIITAGWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVILCAGSCNFSEIVLAQT 178
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY---YA- 215
+ L + + S E+ PFD+ EAE E++ G EYS +F+ YA
Sbjct: 179 RIWFVFPLFPVFLMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYAN 238
Query: 216 -IHIKRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRI 274
I + L F + + +PI + +++L L +Y + A R R
Sbjct: 239 MILMSSLCTLLFLGGWLPILDIPIFQVIPGSIWFSIKVLFFLFVY---IWVRAAFPRYRY 295
Query: 275 DQVAKVNVRLF 285
DQ+ ++ ++F
Sbjct: 296 DQLMRLGWKVF 306
>emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [Acremonium
chrysogenum] >gi|7544703|gb|AAA32171.2| (M24233) NADH
dehydrogenase [Acremonium chrysogenum]
Length = 359
Score = 77.3 bits (187), Expect = 2e-13
Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 11 IVLFLPP-----YLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN 59
++L LP Y+ RK A +Q R GP L+Q + D +KL+ V PT+
Sbjct: 14 LILMLPALLVVAYVTVAERKTMASMQRRLGPNAVGYYGLLQAFADALKLILKEYVAPTQA 73
Query: 60 --WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LMLAGFSVQ 116
LF L P + A++ ++PYG + L I+F A+ ++ + ++LAG+S
Sbjct: 74 NIILFFLGPIVTLVFALLGYAVIPYGPGLSLSDMELGILFMLAVSSLATYGILLAGWSAN 133
Query: 117 NAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIG---EIISNLHLTPSLIVAYAI 173
+ ++ LGS R +++ E +L+ V I+ SL++ + + L L+ I
Sbjct: 134 SKYAFLGSLRSTAQLISYELVLSSVLLIIILITNSLNLNLNVQFQKIIWLALPLLCILII 193
Query: 174 LAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVL 233
E+ PFD+AEAE+E++ G + E++ ++ +F++ L+ S++ L
Sbjct: 194 FFIGSVAETNRAPFDLAEAESELVSGFMTEHAA-VIFVFFFLAEYASIVLMCILTSILFL 252
>gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile]
>gi|3122451|sp|Q37556|NU1M_METSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431940|pir||T11890 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
anemone (Metridium senile) mitochondrion
>gi|1353406|gb|AAC47100.1| (U36784) NADH dehydrogenase
subunit 1 [Metridium senile] >gi|2920991|gb|AAC04636.1|
(AF000023) NADH dehydrogensae subunit 1 [Metridium
senile]
Length = 334
Score = 76.9 bits (186), Expect = 3e-13
Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 1 MIAFTI-LALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVK 47
MI TI + L I++ + P L +A RKV +Q R+GP L+Q D +K
Sbjct: 8 MIIETIHIILKILIIVIPLLVAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPLADGIK 67
Query: 48 LLSIPSVIP--TRNWLFKLYPYLAFASAIVAALLLPYG-GVI--PLKLGYNLIVFFYAIL 102
L + VIP +++ P L+F A++A ++PY GV+ LK+G I+F A+
Sbjct: 68 LFTKELVIPHYANLFIYVAAPVLSFTLALIAWGVIPYDKGVVISDLKIG---ILFTLAVS 124
Query: 103 MVSVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII--- 158
+SV+ ++++G++ Q+ ++ LG+ R +++ E + ++ + GSL+I EI+
Sbjct: 125 SISVYAILMSGWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCVGSLNITEIVLAQ 184
Query: 159 -SNLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYA 215
S + L + S E+ PFD+ E E+E++ G EY+ +F+ A
Sbjct: 185 SSGIWFFFPLFPVAMMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLA 242
>emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120]
Length = 372
Score = 76.9 bits (186), Expect = 3e-13
Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 40/293 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ RK+ A Q R GP L+ D +KL+ ++P + WLF L P L
Sbjct: 51 LERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQADPWLFTLGPILVVLPV 110
Query: 74 IVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLIL 132
++ L++P+G ++ +G + ++ + + L++AG+S N +S LG R +
Sbjct: 111 FLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIGLLMAGYSSNNKYSLLGGLRAAAQSI 170
Query: 133 TVEPLLAIVYGILAYNAGSLDIGEIIS----------NLHLTPSLIVAYAILAYSMYVES 182
+ E LA+ + + SL +I++ N+ P + + I + E
Sbjct: 171 SYEIPLALSVLAIVMMSNSLSTVDIVNQQSGYGILGWNIWRQP---LGFMIFWIAALAEC 227
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRF--ALL--------WFF----- 227
+PFD+ EAE E++ G EYSG +FY + ++ ALL W F
Sbjct: 228 ERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLILSALLVAVLYLGGWDFPIPIN 287
Query: 228 --VSLV-VLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
+LV V P+ A L + + L+ L + L T R+RIDQ+
Sbjct: 288 VLANLVGVSEANPVLQVVSAALGITMTLVKAYFLVFIAILLRWTVPRVRIDQL 340
>sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >gi|319842|pir||QXYB1
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Synechocystis sp. (strain PCC 6803)
>gi|47555|emb|CAA44374.1| (X62517) NDHA [Synechocystis
sp.] >gi|1001395|dbj|BAA10885.1| (D64006) NADH
dehydrogenase subunit 1 [Synechocystis sp.]
Length = 372
Score = 76.5 bits (185), Expect = 4e-13
Identities = 80/326 (24%), Positives = 139/326 (42%), Gaps = 53/326 (16%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ RK+ A Q R GP ++Q D +KL+ V+P + WLF L P L
Sbjct: 51 LERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAKADPWLFTLGPVLVVLPV 110
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
++ L++P+G + + N+ +F + L + + L+++G++ N +S LG R
Sbjct: 111 FLSYLIVPFGQNLVIT-DINVGIFLWIALSSIAPIGLLMSGYASNNKYSLLGGLRAAAQS 169
Query: 132 LTVEPLLAIVYGILAYNAGSLDIGEIIS----------NLHLTPSLIVAYAILAYSMYVE 181
++ E L++ + + SL +I+ N+ P V + I + E
Sbjct: 170 ISYEIPLSLAVLAIVMMSNSLSTIDIVDQQSGYGILGWNIWRQP---VGFLIFWIAALAE 226
Query: 182 SGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV--------- 232
+PFD+ EAE E++ G EY+G +FY ++ F L +
Sbjct: 227 CERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALVFSVLYLGGWDFPIPL 286
Query: 233 ------LPLVPITTQAKALLALL---LQLLLTLALYPVIASLEATNARLRIDQ------- 276
L + P T+ + L+A L + +L + L + L T R+RIDQ
Sbjct: 287 ENVANWLGVAPTTSWLQVLMAALGITMTVLKSYFLIFIAILLRWTVPRVRIDQLLNLGWK 346
Query: 277 ----VAKVNVRLFFASIIVFAMSFLG 298
VA N+ + A + F M+F G
Sbjct: 347 FLLPVALANLLITAALKLTFPMAFGG 372
>gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae]
>gi|7431915|pir||C58931 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Cyanidioschyzon merolae
mitochondrion >gi|4115783|dbj|BAA36521.1| (D89861)
NADH-ubiquinone oxidoreductase chain 1 [Cyanidioschyzon
merolae]
Length = 330
Score = 76.5 bits (185), Expect = 4e-13
Identities = 85/331 (25%), Positives = 151/331 (44%), Gaps = 50/331 (15%)
Query: 1 MIAFTILAL--GIVLFLP-----PYLDGIARKVKARIQHRRGPP------LMQTWYDLVK 47
+I F I+ L GI++ +P YL RK+ IQ R+GP L+Q D +K
Sbjct: 2 IINFVIINLIKGILIIVPLLVSVAYLILAERKIIGAIQKRKGPNVVGMFGLLQPLADGLK 61
Query: 48 LLSIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMV 104
L +++P +++ + P + F ++ + ++P+ G + L L+ + AI +
Sbjct: 62 LFVKETILPNSANIFIYIIAPIITFFLSLASWAVIPFDEGFVLTDLSMGLL-YLLAISSL 120
Query: 105 SVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII----S 159
+V+ +++AG+S + ++ LG R I++ E + + + AGSL++ EI+ S
Sbjct: 121 AVYGIIIAGWSSNSKYAFLGGLRSAAQIISYEVSIGFIIINVLLCAGSLNLSEIVLAQQS 180
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYA---- 215
++ P L + + S E+ PFD+ EAE E++ G EYS +F+
Sbjct: 181 IWYIIP-LFPLFLLFFISSLAETNRAPFDLPEAEAELVAGYNVEYSAITFALFFLGEYTN 239
Query: 216 -IHIKRFALLWFF------VSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEAT 268
I I F FF ++++L +P T + + +TL L+ + + A
Sbjct: 240 IILISSFITTIFFGGWLPPFNMIILQWIPGT--------IWFGIKVTLLLFAFV-WVRAA 290
Query: 269 NARLRIDQVAKVNVRLFFASIIVFAMSFLGW 299
R R DQ L + S VF LGW
Sbjct: 291 FPRYRYDQ-------LIYLSWKVFLPLSLGW 314
>gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi]
>gi|10444210|gb|AAG17776.1|AF288092_1 (AF288092) NADH
dehydrogenase subunit 1 [Naegleria gruberi]
Length = 327
Score = 76.1 bits (184), Expect = 5e-13
Identities = 72/316 (22%), Positives = 146/316 (45%), Gaps = 25/316 (7%)
Query: 2 IAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPL------MQTWYDLVKLLSIPSVI 55
I F +L L +L + RK A IQ RRGP + +Q D +K V+
Sbjct: 9 IIFFLLFLVFLLLTIALTTLVERKAMASIQRRRGPNVVGFFGFLQPIADGLKAFIKEIVL 68
Query: 56 PTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVF-LMLA 111
P+ + ++F L P F +I+ +++P+G + + ++L+ + I +SV+ ++ +
Sbjct: 69 PSNSNLFIFLLAPVFTFFCSILLWVVIPFGENKVLIDFPFSLL-YLLTISSLSVYGIIFS 127
Query: 112 GFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN---LHLTPSLI 168
G+S + ++ LG R +++ E + V+ ++ S ++ +++ N + L
Sbjct: 128 GWSSNSKYAFLGGLRSAAQMISYEVCIGFVFIVMIMMTDSFNLIDVVINQEYVWFILPLF 187
Query: 169 VAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYA-----IHIKRFAL 223
+ I S E+ PFD+ EAE E++ G EYS +F+ A + +
Sbjct: 188 PLWLIFFISALAETNRAPFDLPEAEAELVAGYNVEYSSIAFALFFLAEYGNIVLMSSLLS 247
Query: 224 LWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKV--N 281
++F+ + +PL P+ L++ L + ++ + A R R DQ+ K+
Sbjct: 248 IFFWGGWLAIPL-PLFNLLPDFFTFALKVTLHVFIF---VWIRAAFPRYRYDQLMKLGWK 303
Query: 282 VRLFFASIIVFAMSFL 297
V + + + V+ +SF+
Sbjct: 304 VLMPISVLFVYLISFI 319
>emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine glutinosa]
Length = 317
Score = 75.7 bits (183), Expect = 6e-13
Identities = 81/311 (26%), Positives = 149/311 (47%), Gaps = 26/311 (8%)
Query: 2 IAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVI 55
I ++L ++L +L I RKV +Q R+GP L+Q + D +KL +
Sbjct: 4 IISSLLTFVMILIAVAFLTLIERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEPLQ 63
Query: 56 PTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLG-YNL-IVFFYAILMVSVF-LML 110
P+ +LF L P LA + A++ + LP +PL L NL ++F AI +SV+ L+
Sbjct: 64 PSYASIFLFILAPALAISLALILWISLP----LPLALSDMNLGLMFILAISSLSVYSLLT 119
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLHLTPSL 167
+G++ + ++ +G+ R + ++ E L ++ L +G D+ I + + L +
Sbjct: 120 SGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFDLKLFIDLQNKIWLLFPM 179
Query: 168 IVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFF 227
+ + S E+ PFD+ E E+E++ G E+SG L +F+ A +A + F
Sbjct: 180 WPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALFFLA----EYANILFM 235
Query: 228 VSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFF- 286
SL V+ L ++ +L + T+ L + + A+ R R DQ+ + + F
Sbjct: 236 NSLTVV-LFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLMHLMWKNFLP 294
Query: 287 --ASIIVFAMS 295
S+++F S
Sbjct: 295 ITLSLLIFQFS 305
>emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare]
Length = 362
Score = 75.3 bits (182), Expect = 8e-13
Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 37/290 (12%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ R++ A IQ R GP L+Q D KLL ++P+R LF + P +A S
Sbjct: 49 LEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISV 108
Query: 74 IVAALLLPYGGVIPLK-LGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLIL 132
+++ L++P G L L + ++ + + L++AG+S N +S G R +
Sbjct: 109 LLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSI 168
Query: 133 TVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVES 182
+ E PL V I L+ ++ ++DI E S N+ P + + + S E
Sbjct: 169 SYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGWNIWRQP---IGFLVFLISSLAEC 225
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV------LPLV 236
+PFD+ EAE E++ G EYSG G+FY ++ F L + +P +
Sbjct: 226 ERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYI 285
Query: 237 PI-----TTQAKALLALLLQLLLTLA---LYPVIA-SLEATNARLRIDQV 277
+A +L + + + +TL L+ I+ ++ T R+R+DQ+
Sbjct: 286 SFFDFFQMNKAVGILEMTMGIFITLTKAYLFLFISITIRWTLPRMRMDQL 335
>sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|7431965|pir||T13816 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Atlantic hagfish mitochondrion
>gi|2340020|emb|CAA70716.1| (Y09527) NADH dehydrogenase
subunit 1 [Myxine glutinosa]
Length = 318
Score = 74.9 bits (181), Expect = 1e-12
Identities = 81/311 (26%), Positives = 148/311 (47%), Gaps = 26/311 (8%)
Query: 2 IAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVI 55
I + L ++L +L I RKV +Q R+GP L+Q + D +KL +
Sbjct: 5 IISSFLTFVMILIAVAFLTLIERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEPLQ 64
Query: 56 PTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLG-YNL-IVFFYAILMVSVF-LML 110
P+ +LF L P LA + A++ + LP +PL L NL ++F AI +SV+ L+
Sbjct: 65 PSYASIFLFILAPALAISLALILWISLP----LPLALSDMNLGLMFILAISSLSVYSLLT 120
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLHLTPSL 167
+G++ + ++ +G+ R + ++ E L ++ L +G D+ I + + L +
Sbjct: 121 SGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFDLKLFIDLQNKIWLLFPM 180
Query: 168 IVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFF 227
+ + S E+ PFD+ E E+E++ G E+SG L +F+ A +A + F
Sbjct: 181 WPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALFFLA----EYANILFM 236
Query: 228 VSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFF- 286
SL V+ L ++ +L + T+ L + + A+ R R DQ+ + + F
Sbjct: 237 NSLTVV-LFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLMHLMWKNFLP 295
Query: 287 --ASIIVFAMS 295
S+++F S
Sbjct: 296 ITLSLLIFQFS 306
>gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum]
>gi|2924282|emb|CAA77435.1| (Z00044) NADH dehydrogenase
ND1 subunit [Nicotiana tabacum]
Length = 363
Score = 74.9 bits (181), Expect = 1e-12
Identities = 77/291 (26%), Positives = 129/291 (43%), Gaps = 39/291 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ R++ A IQ R GP ++Q D KLL ++IP+ LF + P +A S
Sbjct: 50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISI 109
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
++ ++P+G + L ++ VFF+ + + V L+++G+ N +S LG R
Sbjct: 110 FLSYSVIPFGDHLVLA-DLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQS 168
Query: 132 LTVEPLLAIVY---GILAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVE 181
++ E LA+ +L+ + ++DI E S NL P + + + S E
Sbjct: 169 ISYEIPLALCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP---IGFIVFLISSLAE 225
Query: 182 SGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL----------- 230
+PFD+ EAE E++ G EYSG G+FY A ++ F L
Sbjct: 226 CERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPY 285
Query: 231 -VVLPLVPITTQAK---ALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
V L I + K L+ + + L T + + T RLR+DQ+
Sbjct: 286 IFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQL 336
>gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana]
>gi|5881751|dbj|BAA84442.1| (AP000423) NADH
dehydrogenase ND1 [Arabidopsis thaliana]
Length = 360
Score = 74.9 bits (181), Expect = 1e-12
Identities = 80/289 (27%), Positives = 133/289 (45%), Gaps = 38/289 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRNW--LFKLYPYLAFASA 73
+ R++ A IQ R GP ++Q D KLL ++ P+R LF + P +A S
Sbjct: 50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISI 109
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
+++ ++P+ + L N+ +F + + + + L+++G+ N +S LG R
Sbjct: 110 LLSYSVIPFSNHLVLA-DLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQS 168
Query: 132 LTVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVE 181
++ E PL V I L+ + ++DI E S NL P + + I S E
Sbjct: 169 ISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP---IGFIIFLISSLAE 225
Query: 182 SGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL------VVLPL 235
+PFD+ EAE E+I G EYSG G+FY A ++ F L + +P
Sbjct: 226 CERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPY 285
Query: 236 VPITT--QAKALLALLLQLLLTLA-----LYPVIASLEATNARLRIDQV 277
+ I Q + + + +TLA L+ IA+ T RLR+DQ+
Sbjct: 286 ISILELFQRDQIFGTTIGIFITLAKTYLFLFVSIAT-RWTLPRLRMDQL 333
>emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 1 [Oenothera
elata subsp. hookeri]
Length = 363
Score = 74.9 bits (181), Expect = 1e-12
Identities = 76/312 (24%), Positives = 140/312 (44%), Gaps = 40/312 (12%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
++ L LGI L + + + R++ A IQ R GP ++Q D +KL+ ++
Sbjct: 30 LVPILSLVLGITLGVLVIV-WLEREISAGIQQRIGPEYAGPMGILQPLADGIKLIFKENL 88
Query: 55 IPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLML 110
+P+R LF + P +A S +++ ++P+ + L N+ VF + + + + L++
Sbjct: 89 LPSRGDTRLFSIGPSIAVISILLSYSVIPFSSHLVLS-DLNIGVFLWIAVSSIAPIGLLM 147
Query: 111 AGFSVQNAFSHLGSAREMMLILTVE---PLLAIVYGILAYNAGSLDIGEIIS-------N 160
+G+ N +S LG R ++ E L + +L+ + ++DI E S N
Sbjct: 148 SGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISLLSNSLSTVDIVEAQSKYGLWGWN 207
Query: 161 LHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKR 220
L P + + + S E +PFD+ EAE E++ G EYSG G+FY A ++
Sbjct: 208 LWRQP---IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 264
Query: 221 FALLWFF-----------VSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATN 269
F +S + +P + T+ + + + TLA + + T
Sbjct: 265 LVSSLFVTVLYLGGWNISISYIFVPGLFEITKVGRVFGTTIGIFTTLAKTYLFLFISITT 324
Query: 270 ----ARLRIDQV 277
RLR+DQ+
Sbjct: 325 RWTLPRLRMDQL 336
>gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroideus]
>gi|7110474|gb|AAF36946.1|AF222718_20 (AF222718) NADH
dehydrogenase subunit 1 [Chrysodidymus synuroideus]
Length = 326
Score = 74.9 bits (181), Expect = 1e-12
Identities = 63/254 (24%), Positives = 121/254 (46%), Gaps = 25/254 (9%)
Query: 1 MIAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKL 48
M F I+ + I+ + P L +A RK+ I RRGP L+Q D KL
Sbjct: 1 MYIFFIIFIKILFIIVPLLISVAYFTLAERKILGAIHRRRGPNVVGVMGLLQPLSDGFKL 60
Query: 49 LSIPSVIPTRN--WLFKLYPYLAFASAIVAALLLP---YGGVIPLKLGYNLIVFFYAILM 103
+++P+ + +F L P + F +++ ++P Y + + LG I++F AI
Sbjct: 61 FVKEAIVPSSSNKLIFILSPAVTFIISLLGWAIVPFNKYSTLAEINLG---ILYFLAISS 117
Query: 104 VSVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLH 162
+ ++ ++++G+S + ++ LGS R +++ E + + + + GS ++ EII +
Sbjct: 118 LGIYGIIMSGWSSNSKYAFLGSLRSTAQMISYEVAIGFIITTIIISVGSFNLQEIIDSQK 177
Query: 163 LTPSLIVAYAIL---AYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK 219
+I + + + S E+ PFD+ EAE+E++ G EYS +F
Sbjct: 178 FCWFIITFFPLFLMFSISGLAETNRHPFDLPEAESELVSGYNVEYSAMSFALFSLG-EYS 236
Query: 220 RFALLWFFVSLVVL 233
L+ FV+++ L
Sbjct: 237 NMLLMSSFVTILFL 250
>gi|11466852 NADH dehydrogenase ND1 [Oryza sativa]
>gi|128620|sp|P12124|NU1C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66139|pir||DERZN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - rice chloroplast
>gi|669087|emb|CAA33910.1| (X15901) NADH dehydrogenase
ND1 [Oryza sativa] >gi|226676|prf||1603356DD NADH
dehydrogenase ND1 [Oryza sativa]
Length = 362
Score = 74.1 bits (179), Expect = 2e-12
Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 37/290 (12%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRNW--LFKLYPYLAFASA 73
+ R++ A IQ R GP L+Q D KLL ++P+R LF + P +A S
Sbjct: 49 LEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISI 108
Query: 74 IVAALLLPYGGVIPLK-LGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLIL 132
+++ L++P G L L + ++ + + L++AG+S N +S G R +
Sbjct: 109 LLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSI 168
Query: 133 TVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVES 182
+ E PL V I L+ ++ ++DI E S NL P + + + S E
Sbjct: 169 SYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGWNLWRQP---IGFLVFLISSLAEC 225
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV------LPLV 236
+PFD+ EAE E++ G EYSG G+FY ++ F L + +P +
Sbjct: 226 ERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSIPYI 285
Query: 237 PI-----TTQAKALLALLLQLLLTLA---LYPVIA-SLEATNARLRIDQV 277
+ +L + + + +TL L+ I+ ++ T R+R+DQ+
Sbjct: 286 SFFGFFQMNKMVGILEMTMSIFITLTKAYLFLFISITIRWTLPRMRMDQL 335
>sp|Q60019|NQO8_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NADH DEHYDROGENASE 1, CHAIN
8) (NDH-1, CHAIN 8) >gi|7431938|pir||T11905 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Thermus aquaticus thermophilus
>gi|1279868|gb|AAA97945.1| (U52917) NADH dehydrogenase
I, subunit NQO8 [Thermus thermophilus]
Length = 365
Score = 74.1 bits (179), Expect = 2e-12
Identities = 76/284 (26%), Positives = 135/284 (46%), Gaps = 36/284 (12%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTR--NWLFKLYPYLAFASA 73
I R++ AR Q R GP L+Q D +K + ++ + +LF L P ++ A
Sbjct: 34 IERRLLARFQVRMGPNRVGPFGLLQPLADAIKSIFKEDIVVAQADRFLFVLAPLISVVFA 93
Query: 74 IVAALLLPYGG----------VIPLKLGYNLIVFFYAILMVSVF-LMLAGFSVQNAFSHL 122
++A L+P+G VI L LG I++ +A+ ++V+ + L+G++ + +S L
Sbjct: 94 LLAFGLIPFGPPGSFFGYQPWVINLDLG---ILYLFAVSELAVYGIFLSGWASGSKYSLL 150
Query: 123 GSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV-- 180
GS R +++ E L + GSL++ +I+ N + YA A+ +Y+
Sbjct: 151 GSLRSSASLISYELGLGLALLAPVLLVGSLNLNDIV-NWQKEHGWLFLYAFPAFLVYLIA 209
Query: 181 ---ESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVP 237
E+ PFD+ EAE E++GG EYS +F A +I F + ++P +
Sbjct: 210 SMAEAARTPFDLPEAEQELVGGYHTEYSSIKWALFQMAEYIH------FITASALIPTLF 263
Query: 238 ITTQAKALLAL-LLQLLLTLALYP-VIASLEATNARLRIDQVAK 279
+ +L + L + L +A + + AT RLR DQ+ +
Sbjct: 264 LGGWTMPVLEVPYLWMFLKIAFFLFFFIWIRATWFRLRYDQLLR 307
>sp|O78699|NU1M_TAMTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399737|dbj|BAA32108.1|
(AB011216) NADH dehydrogenase subunit 1 [Tamandua
tetradactyla]
Length = 318
Score = 74.1 bits (179), Expect = 2e-12
Identities = 82/317 (25%), Positives = 144/317 (44%), Gaps = 34/317 (10%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
MI L + I+L + +L + RK +Q R+GP L+Q + D VKL + +
Sbjct: 3 MINIACLIVPILLAMA-FLTLVERKTLGYMQLRKGPNIVGPHGLLQPFADAVKLFTKEPL 61
Query: 55 IP--TRNWLFKLYPYLAFASAIV--AALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLML 110
P + LF + P LA A+ A L +PY +I L LG ++F AI ++V+ +L
Sbjct: 62 RPLTSSKLLFMVAPTLALTLALTMWAPLPMPYS-LISLNLG---LLFILAISSLAVYSIL 117
Query: 111 -AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIV 169
+G++ + ++ +G+ R + ++ E LAI+ + +GS + +I+ +I
Sbjct: 118 WSGWASNSKYALIGAIRAVAQTVSYEVTLAIILLSILLMSGSFTLTNLITTQEQMWLIIP 177
Query: 170 AYAILAY---SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYA----IHIKRFA 222
A+ + S E+ PFD+ E E+E++ G EY+ +F+ A I +
Sbjct: 178 AWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMMMNAL 237
Query: 223 LLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNV 282
F+ PLVP A +L TL L + A+ R R DQ+ +
Sbjct: 238 TTLLFLGAHHTPLVPEAYTANFVLK-------TLMLTATFLWIRASYPRFRYDQL----M 286
Query: 283 RLFFASIIVFAMSFLGW 299
L + + + ++ L W
Sbjct: 287 HLLWKNFLPITLAMLMW 303
>gb|AAF13042.2|AF157639_2 (AF157639) HycD [Desulfitobacterium dehalogenans]
Length = 322
Score = 74.1 bits (179), Expect = 2e-12
Identities = 69/277 (24%), Positives = 124/277 (43%), Gaps = 18/277 (6%)
Query: 21 GIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTR-NWLFKLYPYLAFASAIVAALL 79
G+ +K K+ + G + DL K + VI +W+F + P L S +A +
Sbjct: 25 GMDKKSKSLLADASGTISSPAYRDLRKYMGKEEVISEHASWIFLVTPSLVLGSTFLACFV 84
Query: 80 LPYG-GVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVEPLL 138
+P G P+ +L ++ + FL LAG F +GS+RE+ EP
Sbjct: 85 VPGPWGWAPIHSLGSLFWLAASLGLARFFLALAGLDAGGTFGGMGSSREVFAAALAEPGF 144
Query: 139 AIVYGILAYNAGSLDIGEIISNLH-----LTPSLIVAYAILAYSMYVESGFVPFDVAEAE 193
+ +LA + + +I+ L TP ++ A+ + E G +P D +
Sbjct: 145 ILSLVVLALMTETTSLMGMITGLQGMSIFETPRVLALLALFII-VIAEMGRIPVDNPDTH 203
Query: 194 TE---VIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV---LPLVPITTQAKALLA 247
E + G L +YSGR LG +A +K+ LL L++ + L+ + Q L
Sbjct: 204 LELTMIHEGMLLDYSGRSLGFLLWAEQLKQLLLLQLLTVLILPANINLMNPSGQGIPLET 263
Query: 248 LLLQLLLTLALYPVI----ASLEATNARLRIDQVAKV 280
LL+Q +L + L ++ A+LE+ N ++R+ ++ +
Sbjct: 264 LLIQGILQIGLIVLLGAFFATLESINVKVRLFRIPNI 300
>gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P25706|NU1C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|320098|pir||JQ1671 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - maize chloroplast
>gi|12420|emb|CAA44228.1| (X62370) NADH Dehydrogenase
subunit A [Zea mays] >gi|902289|emb|CAA60353.1|
(X86563) NADH dehydrogenase ND1 [Zea mays]
Length = 362
Score = 73.7 bits (178), Expect = 2e-12
Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 37/290 (12%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRNW--LFKLYPYLAFASA 73
+ R++ A IQ R GP L+Q D KLL ++P+R LF + P +A S
Sbjct: 49 LEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISI 108
Query: 74 IVAALLLPYGGVIPLK-LGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLIL 132
+++ L++P G L L + ++ + + L++AG+S N +S G R +
Sbjct: 109 LLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSI 168
Query: 133 TVE-PLLAIVYGI--LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYSMYVES 182
+ E PL V I L+ ++ ++DI E S NL P + + + S E
Sbjct: 169 SYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGWNLWRQP---IGFLVFLISSLAEC 225
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVV------LPLV 236
+PFD+ EAE E++ G EYSG G+FY ++ F L + +P +
Sbjct: 226 ERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSIPYI 285
Query: 237 PI-----TTQAKALLALLLQLLLTLA---LYPVIA-SLEATNARLRIDQV 277
+ +L +++ + +TL L+ I+ ++ T R+R+DQ+
Sbjct: 286 SFFGFFQMNKIIGILEMVIGIFITLTKAYLFLFISITIRWTLPRMRMDQL 335
>pir||S06058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Podospora
anserina mitochondrion
Length = 368
Score = 73.0 bits (176), Expect = 4e-12
Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 20/247 (8%)
Query: 6 ILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLLSIPS 53
I + +VL L P L GIA RK A +Q R GP L+Q + D +KLL
Sbjct: 7 ISLIEVVLVLVPALLGIAYVTIAERKTMASMQRRLGPNFVGYYGLLQAFADALKLLLKEY 66
Query: 54 VIPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LML 110
V PT+ LF L P + +++ ++PYG + + I + A+ ++ + ++L
Sbjct: 67 VAPTQANIILFFLGPVITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLATYGILL 126
Query: 111 AGFSVQNA-FSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPS--- 166
AG+ N+ ++ LGS R +++ E +L+ ++ GSL++ I + +
Sbjct: 127 AGWGSANSKYAFLGSLRSTAQLISYELVLSSAILLVIMLTGSLNLSVNIESQRAIWNIFP 186
Query: 167 LIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWF 226
L+ + I E+ PFD+AEAE+E++ G + E++ ++ +F++ L+
Sbjct: 187 LLPVFIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAA-VVFVFFFLAEYGSIVLMCI 245
Query: 227 FVSLVVL 233
S++ L
Sbjct: 246 LTSILFL 252
>gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideum]
>gi|3122447|sp|Q37313|NU1M_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|2130173|pir||S68157 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - slime
mold (Dictyostelium discoideum) mitochondrion
>gi|699593|dbj|BAA03935.1| (D16466) NADH dehydrogenase
subunit 1 [Dictyostelium discoideum]
>gi|4958886|dbj|BAA78063.1| (AB000109) NADH
dehydrogenase subunit 1 [Dictyostelium discoideum]
Length = 317
Score = 72.6 bits (175), Expect = 6e-12
Identities = 66/258 (25%), Positives = 119/258 (45%), Gaps = 24/258 (9%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIP--TRNWLFKLYPYLAFASA 73
+ RKV A +Q RRGP L+Q D +KL+ ++IP ++ + P L F +
Sbjct: 32 LERKVMAAMQKRRGPNVVGFVGLLQPLADGLKLVLKETIIPIVADKLIYAIAPILTFTIS 91
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LMLAGFSVQNAFSHLGSAREMMLIL 132
IV ++ G + ++F AI + V+ ++LAG++ + ++ LG R ++
Sbjct: 92 IVLWSVIAVGVQSVFASINSGVIFILAISSIGVYGIILAGWASNSKYAFLGGLRSAAQMV 151
Query: 133 TVEPLLAIVYGILAYNAGSLDIGEIISN-------LHLTPSLIVAYAILAYSMYVESGFV 185
+ E L ++ + AG++++ EI+ N + L P ++A+ S E+
Sbjct: 152 SYEVALGLIILSIITYAGTVNLQEIMENQEKVWFIIPLLPGFLLAFI----SALTETNRP 207
Query: 186 PFDVAEAETEVIGGPLAEYSGRLLGIF----YYAIHIKRFALLWFFVSLVVLPLVPITTQ 241
PFD+ EAE E++ G EYS +F Y I + L FF+ +V + +
Sbjct: 208 PFDLPEAEAELVSGYNVEYSSTGFALFFLGEYANIILMSVLLSVFFLGGIVSNKILGAMK 267
Query: 242 AKALLALLLQLLLTLALY 259
+L + + TL Y
Sbjct: 268 GVGMLCSFIWVRATLPRY 285
>gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Prototheca wickerhamii]
>gi|7431941|pir||T11938 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Prototheca wickerhamii
mitochondrion >gi|467870|gb|AAD12657.1| (U02970) NADH
dehydrogenase (ubiquinone), subunit 1 [Prototheca
wickerhamii]
Length = 328
Score = 72.6 bits (175), Expect = 6e-12
Identities = 65/229 (28%), Positives = 113/229 (48%), Gaps = 21/229 (9%)
Query: 2 IAFTILALGIVLFLP-PYLDGIARKVKARIQHRRGPPLM------QTWYDLVKLLSIPSV 54
I ILAL + L L +L RKV A +Q R+GP ++ Q D +KL+ V
Sbjct: 8 IVLKILALTVPLILSVAFLVLAERKVLASMQRRKGPNVVGIYGIFQPIADGLKLIVKEPV 67
Query: 55 IPTRNWL--FKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LMLA 111
+P+ L F P L F + VA +P+G + + + +++ +AI + ++ ++ A
Sbjct: 68 LPSSANLVIFLFAPVLTFLLSQVAWASIPFGEGLVIADIHAGLLYVFAISSLGIYGVITA 127
Query: 112 GFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN-------LHLT 164
G+S + ++ LGS R +++ E + ++ + AGSL++ EI+ + L
Sbjct: 128 GWSSNSKYAFLGSCRSAAQMVSYEVSIGLILITVCICAGSLNLTEIVIAQTQIWYCIPLF 187
Query: 165 PSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
P LI+ + S E+ PFD+ EAE E++ G EYS +F+
Sbjct: 188 PLLIMFFI----SCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFF 232
>pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Methanococcus
jannaschii >gi|1591222|gb|AAB98508.1| (U67501)
NADH-ubiquinone oxidoreductase, subunit 1 [Methanococcus
jannaschii]
Length = 295
Score = 72.2 bits (174), Expect = 7e-12
Identities = 68/254 (26%), Positives = 118/254 (45%), Gaps = 23/254 (9%)
Query: 21 GIARKVKARIQHRRGPPLMQ----TWYDLVKLLSIPSVIPTRNWLFKLYPYLAFASAIVA 76
G+ RK+ ARIQ R GPP++Q T VK ++ P I N L+ L A + A
Sbjct: 27 GLHRKIMARIQGRPGPPIIQYLLHTLKFYVKEITFP--ITAGNPLYIFVALLDIAIWLAA 84
Query: 77 ALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLILTVEP 136
++ I K +I+ Y ++ + G S + + +G R + P
Sbjct: 85 LII-----AIDFKSSLLIIIGIY--VLQKIVEHGCGLSSGSPYGKIGGVRSVFSAAAEVP 137
Query: 137 LLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV----ESGFVPFDVAEA 192
L A+V I S+ I +I+S + SL+ I A++ ++ ++ PF + +
Sbjct: 138 LFAVVAAIYL-TTHSVLISDILSYQEIHGSLLFKMPICAFAFFILLVSKAPNSPFGIVKG 196
Query: 193 ETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLV---PITTQAKALLALL 249
+ +++ G + E+ G L I Y A I F LLW F+++ + PLV P+ T A ++ +
Sbjct: 197 K-DIVSGYMTEHYGLLGAIIYIAEAIAYFVLLWLFIAVFIGPLVINSPVLTLA-VMVVMT 254
Query: 250 LQLLLTLALYPVIA 263
+ L L P++A
Sbjct: 255 VILAFVNGLTPLLA 268
>gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima]
>gi|7431923|pir||T11116 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Florometra serratissima
mitochondrion >gi|2970423|gb|AAD05073.1| (AF049132) NADH
dehydrogenase subunit 1 [Florometra serratissima]
Length = 325
Score = 72.2 bits (174), Expect = 7e-12
Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 47/322 (14%)
Query: 6 ILALGIVLFLPPYLDGIA------RKVKARIQHRRGPPL------MQTWYDLVKL----- 48
I+ + IV + P L +A RK+ +Q R+GP + MQT D +KL
Sbjct: 6 IMLINIVNIIIPILIAVAFIVLIERKILGYMQLRKGPSIVGPSGTMQTIADGIKLFIKEN 65
Query: 49 LSIPSVIPTRNWLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNL-IVFFYAILMVSVF 107
L S PT LF L P L A++ ++P + NL ++ I +SV+
Sbjct: 66 LKPSSATPT---LFFLSPALFLLLALILWTIIPCPNP---NINVNLSLILILGISSLSVY 119
Query: 108 LMLA-GFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPS 166
+L G++ + +S +G R + ++ E ++I+ L G+ ++ II N
Sbjct: 120 SLLGTGWASNSKYSLIGGIRAVAQTISYEISISIILLSLIILTGTFNLNAII-NAQNNSW 178
Query: 167 LIVAYAILAYSMYV----ESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYA-----IH 217
LI + L+Y Y+ E+ PFD+ E E+E++ G EY+G +F+ A I
Sbjct: 179 LIFSCIPLSYIWYISSLAETNRTPFDLTEGESELVSGYNVEYAGGPFALFFLAEYANIIF 238
Query: 218 IKRFALLWFFVSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
I + + F + + + PI ++A+ +L + L+ + A+ R R DQ+
Sbjct: 239 INLLSTILFLGGNLPINIFPINI---IIIAIKTSILSSTFLW-----VRASFPRFRYDQL 290
Query: 278 AKVNVRLFFASIIVFAMSFLGW 299
+ L + S + F++SFL W
Sbjct: 291 ----MFLTWKSYLPFSISFLLW 308
>gi|9838451 NADH dehydrogenase subunit 1 [Beta vulgaris]
>gi|9087313|dbj|BAA99457.1| (AP000397) NADH
dehydrogenase subunit 1 [Beta vulgaris]
Length = 325
Score = 72.2 bits (174), Expect = 7e-12
Identities = 80/312 (25%), Positives = 144/312 (45%), Gaps = 39/312 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D KL+
Sbjct: 3 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGSKLI 59
Query: 50 SIPSVIPTR-NW-LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF 107
+ P+ N+ LF++ P F ++VA ++P+ + L +++ +AI + V+
Sbjct: 60 LKEPISPSSANFSLFRMAPVTTFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVY 119
Query: 108 -LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII-------S 159
+++AG+S + ++ LG+ R ++ E + ++ + G + EI+ S
Sbjct: 120 GIIIAGWSSNSKYAFLGALRSAAQMVPYEVSIGLILITVLICVGPRNSSEIVMAQKQIWS 179
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK 219
+ L P L++ + S E+ PFD+ EAE E++ G EYS +F+ +
Sbjct: 180 GIPLFPVLVMFFI----SCLAETNRAPFDLPEAERELVAGYNVEYSSMGSALFFLGEYAN 235
Query: 220 RFALLWFFVSL------VVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
+ SL +L L PI+ + + ++++L L LY + A R R
Sbjct: 236 MILMSGLCTSLSPGGWPPILDL-PISKRIPGSIWFSIKVILFLFLY---IWVRAAFPRYR 291
Query: 274 IDQVAKVNVRLF 285
DQ+ + ++F
Sbjct: 292 YDQLMGLGRKVF 303
>sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|83809|pir||A23431 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Neurospora crassa mitochondrion
>gi|763159|emb|CAA27029.1| (X03280) URF1 [Neurospora
crassa]
Length = 371
Score = 71.8 bits (173), Expect = 9e-12
Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 21/247 (8%)
Query: 6 ILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLLSIPS 53
I L ++L L P L +A RK A +Q R GP L+Q + D +KLL
Sbjct: 8 ISILEVLLVLVPSLLAVAYVTVAERKTMASMQRRLGPNAVGYLGLLQAFADALKLLLKEY 67
Query: 54 VIPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LML 110
V T+ LF L P + +++ ++PYG + ++ I++ A+ ++ + ++L
Sbjct: 68 VALTQANMTLFFLGPVITLIFSLLGYAVIPYGPSLVIQDVNLGILYMLAVSSLATYGILL 127
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN----LHLTPS 166
AG+S + ++ LGS R +++ E +L+ ++ GS ++G + L + P
Sbjct: 128 AGWSANSKYAFLGSLRSAAQLISYELVLSSAILLVIMLTGSFNLGVNTESQRAVLFVLP- 186
Query: 167 LIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWF 226
L+ + I E+ PFD+AEAE+E++ G + E++ ++ +F++ L+
Sbjct: 187 LLPIFIIFFIGSIAETNRAPFDLAEAESELVSGFMTEHAA-VVFVFFFLAEYGSIVLMCI 245
Query: 227 FVSLVVL 233
S++ L
Sbjct: 246 LTSILFL 252
>pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH1 -
Aquifex aeolicus >gi|2983738|gb|AAC07299.1| (AE000734)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 336
Score = 71.8 bits (173), Expect = 9e-12
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 37/261 (14%)
Query: 2 IAFTILALGIVLFLP----PYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSI 51
+AFT L + IV L YL RK+ IQ+R GP ++Q D +KL +
Sbjct: 8 LAFTFLKIVIVFSLALGIGAYLTWFERKLAGHIQNRLGPTVVGKFGILQPLADALKLATK 67
Query: 52 PSVIPTRNWLFKLYPYLAFASAIVAALLL----PYGG--------VIPLKLGYNL-IVFF 98
+IP K Y A A+V ++LL P+G + P+ N+ ++
Sbjct: 68 EVIIP--RGADKPVYYAAVVMALVPSILLLTIIPFGPGFRVGNTYIEPIIADVNIALLLA 125
Query: 99 YAILMVSVF-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAI-VYGILAYNAGSLDIGE 156
+A +SV+ + +G++ + ++ +GS R+ +++ E +L V G++ +G
Sbjct: 126 FAFGSLSVYGTIFSGWASNSKYAFIGSLRKAAVVIAYEVVLGFSVLGVILLAGTLSTVGI 185
Query: 157 IISNLHLTPSLI----VAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIF 212
+ + + I VA+ + + M ESG VPFD+ EAE E++ G EY G G F
Sbjct: 186 VEAQIQKGVWFIFYQPVAFILYLFCMLAESGRVPFDIQEAEAELVTGYNVEYGGMKFGAF 245
Query: 213 YYA------IHIKRFALLWFF 227
A I + A++ FF
Sbjct: 246 PLAEWYVNVIALSAIAVVLFF 266
>sp|Q01300|NU1M_PETHY NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1334430|emb|CAA42946.1|
(X60400) RNA editing, various c to u transitions, see
single exon entries [Petunia x hybrida]
Length = 325
Score = 71.4 bits (172), Expect = 1e-11
Identities = 80/312 (25%), Positives = 144/312 (45%), Gaps = 39/312 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 3 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 59
Query: 50 SIPSVIPTR-NW-LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF 107
+ P+ N+ LF++ P F ++VA ++P+ + L +++ +AI + V+
Sbjct: 60 LKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVY 119
Query: 108 -LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII-------S 159
+++AG+S + ++ LG+ R ++ E + ++ + GS + EI+ S
Sbjct: 120 GIIIAGWSSNSKYAFLGALRSAAQMVPYEVSIGLILITVLICVGSRNSSEIVMAQKQIWS 179
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK 219
+ L P L++ + S E+ PFD+ EAE E + G EYS + + +
Sbjct: 180 GIPLFPVLVMFFI----SRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALSFLGEYAN 235
Query: 220 RFALLWFFVSL------VVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
+ SL +L L PI+ + + ++++L L LY + A R R
Sbjct: 236 MILMSGLCTSLSPGGWPPILDL-PISKKIPGSIWFSIKVILFLFLY---IWVRAAFPRYR 291
Query: 274 IDQVAKVNVRLF 285
DQ+ + ++F
Sbjct: 292 YDQLMGLGRKVF 303
>pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH2 -
Aquifex aeolicus >gi|2983789|gb|AAC07347.1| (AE000737)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 259
Score = 71.4 bits (172), Expect = 1e-11
Identities = 66/236 (27%), Positives = 115/236 (47%), Gaps = 29/236 (12%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
++ ++ALGI FL + RKV A IQ R GP ++ W+ L++ L+ + T+
Sbjct: 15 IVVILLIALGIGAFLT----WVERKVAAHIQRRPGP-MVVGWHGLLQPLANGLKLLTKED 69
Query: 61 LFKLYP-----YLAFASAIVAALLL----PYGG--------VIPLKLGYNL-IVFFYAIL 102
LF Y +LA A+V A L+ P+G V P+ N+ ++ +A+
Sbjct: 70 LFPRYGDKFLYHLAIILALVPATLVFSVVPFGPEFEVFGYKVKPILSDVNVGLLLVFALG 129
Query: 103 MVSVFLM-LAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS-- 159
++V+ + LAG++ + + + S R+ ++++ E ++ AG+L EI+
Sbjct: 130 SMAVYAVALAGWASNSKYPLIASMRKAGVLVSYEVVITFAVMGPIMLAGTLSTYEIVQKQ 189
Query: 160 ---NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIF 212
NL +A+ + ++ E G VPFDV EAE E++ G EY G G+F
Sbjct: 190 IEQNLWYIWVQPIAFVVYMFAALAEMGRVPFDVQEAEAELVTGFTVEYGGMKFGLF 245
>gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259586|gb|AAF43887.1|AF166114_99 (AF166114) subunit
1 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 367
Score = 71.4 bits (172), Expect = 1e-11
Identities = 58/217 (26%), Positives = 103/217 (46%), Gaps = 24/217 (11%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ RK+ A +Q R GP ++Q D +KL +IP++ LF L P +
Sbjct: 51 LERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSKGDVLLFTLGPAIVVIPI 110
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
++ L++P+G + + NL +FF+ + + + L+++G+ N +S LG R
Sbjct: 111 FLSYLIVPFGENLIVS-NINLGIFFWITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQS 169
Query: 132 LTVEPLLAIVYGILAYNAGSLDIGEIIS----------NLHLTPSLIVAYAILAYSMYVE 181
L+ E LA+ + + SL +I+ N+ P +A+ I A + E
Sbjct: 170 LSYEIPLALCVLSICLLSDSLSTIDIVQKQSTYGILGWNIWRQPIGFIAFIIAALA---E 226
Query: 182 SGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHI 218
+PFD+ EAE E++ G EY+G G+FY ++
Sbjct: 227 CERLPFDLPEAEEELVAGYQTEYTGMKFGLFYIGSYV 263
>sp|P29920|NQO8_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NADH DEHYDROGENASE 1, CHAIN
8) (NDH-1, CHAIN 8) >gi|477934|pir||C45456 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Paracoccus denitrificans >gi|150608|gb|AAA25592.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 345
Score = 71.0 bits (171), Expect = 2e-11
Identities = 70/304 (23%), Positives = 143/304 (47%), Gaps = 29/304 (9%)
Query: 2 IAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVI 55
+A +G ++F+ Y D RK+ A +Q RRGP L+QT+ D +K + VI
Sbjct: 20 LAVIAFVMGSLIFMV-YGD---RKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVI 75
Query: 56 PTR--NWLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVFLMLAG 112
P +++ L P+L+ A+ A +++P+ G + + ++ F A + +++ G
Sbjct: 76 PAGADKFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGG 135
Query: 113 FSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIIS---------NLHL 163
++ + + L S R +++ E L ++ + + GS+++ I+ N +
Sbjct: 136 WASNSKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSMNLTAIVEAHGGDYGLLNWYW 195
Query: 164 TPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFAL 223
P L + + S E PFD+ EAE+E++ G + EYS +F +I + L
Sbjct: 196 LPHLPMV-VLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMY-L 253
Query: 224 LWFFVSLVVLP--LVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVN 281
+ +SL+ L P+ A +++++ ++ A ++A R R DQ+ ++
Sbjct: 254 MCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMF---AMVKAIVPRYRYDQLMRIG 310
Query: 282 VRLF 285
++F
Sbjct: 311 WKVF 314
>gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus]
>gi|1352537|sp|P48898|NU1M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431891|pir||S59101 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Chondrus crispus) mitochondrion
>gi|1334495|emb|CAA87617.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 1 [Chondrus crispus]
Length = 326
Score = 71.0 bits (171), Expect = 2e-11
Identities = 59/231 (25%), Positives = 113/231 (48%), Gaps = 19/231 (8%)
Query: 1 MIAFTILALGIVLFLP-----PYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLL 49
M ++L I + LP Y+ RKV A IQ R+GP L+Q D +KL
Sbjct: 1 MFLLSLLIKIITIILPLLVAVAYMTLAERKVMAAIQRRKGPNIVGVFGLLQPLADGLKLF 60
Query: 50 SIPSVIPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSV 106
+++P+ +F L P L F A+V+ ++P G G++ + +++ AI + V
Sbjct: 61 VKETILPSSANIIIFILAPILTFLLALVSWCVIPLGEGMVYSDINIG-VLYILAISSLGV 119
Query: 107 F-LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLH 162
+ ++ +G++ + ++ LG+ R +++ E + ++ + +GSL+ EI+ ++
Sbjct: 120 YGIITSGWASNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCSGSLNFTEIVLAQQSIW 179
Query: 163 LTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
L + + S+ E+ PFD+ EAE E++ G EYS +F+
Sbjct: 180 FVIPLFPIFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALFF 230
>pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105135|gb|AAF83123.1|AE003884_8 (AE003884)
NADH-ubiquinone oxidoreductase, NQO8 subunit [Xylella
fastidiosa]
Length = 330
Score = 71.0 bits (171), Expect = 2e-11
Identities = 67/297 (22%), Positives = 131/297 (43%), Gaps = 29/297 (9%)
Query: 24 RKVKARIQHRRGPP-----LMQTWYDLVKLLSIPSVIPTR--NWLFKLYPYLAFASAIVA 76
RK+ + R GP L Q + D+ KLL + P++ +F + P L A + A
Sbjct: 18 RKLIGWMHVRHGPMYVGMGLFQAFADVFKLLFKEVLYPSKAHKAIFVIAPLLTLAPSFAA 77
Query: 77 ALLLPYGGVIPLKLGYNLIVFFYAILMVSVF-LMLAGFSVQNAFSHLGSAREMMLILTVE 135
++P+ + L +++ A+ + V+ ++LAG++ + ++ LG+ R +++ E
Sbjct: 78 WAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYE 137
Query: 136 PLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAYAILAYSMYV--------ESGFVPF 187
+ + AGSL++ +I+ + + I + +++ E+ PF
Sbjct: 138 IAMGFALVGVMIAAGSLNLSQIVMAQAGSSGFFDWFLIPLFPLFIVYWVSGVAETNRSPF 197
Query: 188 DVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLP--LVPITTQAKAL 245
DV E E+E++ G + EYSG + +F+ A L+ F +S+ L L PI
Sbjct: 198 DVVEGESEIVAGHMVEYSGSVFALFFLA-EYANMILVSFLISIFFLGGWLSPIQGWVSGQ 256
Query: 246 LALLLQ----------LLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVF 292
++ L+ L L A+ R R DQ+ ++ ++F IV+
Sbjct: 257 VSPLIDWVWNGGWPWLLFKVLFFASAYIWFRASFPRYRYDQIMRLGWKVFIPLTIVW 313
>sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 HOMOLOG
>gi|541331|pir||JQ2135 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Plectonema boryanum
>gi|216818|dbj|BAA00814.1| (D01014) NADH-ubiquinone
oxidoreductase chain 1 homolog [Plectonema boryanum]
Length = 372
Score = 70.2 bits (169), Expect = 3e-11
Identities = 75/293 (25%), Positives = 132/293 (44%), Gaps = 40/293 (13%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTR--NWLFKLYPYLAFASA 73
+ RK+ A Q R GP ++ D +KL+ V+P + LF L P +
Sbjct: 51 LERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKADKLLFTLGPAIVVIPV 110
Query: 74 IVAALLLPYGGVIPLK-LGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGSAREMMLIL 132
++ L+LP+G + + +G + ++ +V + L+++G++ N +S LG R +
Sbjct: 111 FLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASNNKYSLLGGLRAAAQSI 170
Query: 133 TVEPLLAIVYGILAYNAGSLDIGEIIS----------NLHLTPSLIVAYAILAYSMYVES 182
+ E LA+ + + SL +I++ N+ P V + I + E
Sbjct: 171 SYELPLALSVLAVVMMSNSLSTVDIVNQQAGYGILGWNIWRQP---VGFIIFWIAALAEC 227
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK------RFALLW-----FFVSLV 231
+PFD+ EAE E++ G EYSG +FY ++ FA+L+ F +SL
Sbjct: 228 ERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLFAVLYLGGWEFPISLS 287
Query: 232 V---LPLVPITTQAKALLALLLQLLLTLA----LYPVIASLEATNARLRIDQV 277
V L VP +T L+ + + +TL L + + T R+RIDQ+
Sbjct: 288 VISGLIGVPESTPWLQLIFATIGIGMTLLKAYFLIFLAILMRWTVPRVRIDQL 340
>sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
Length = 367
Score = 69.9 bits (168), Expect = 4e-11
Identities = 78/295 (26%), Positives = 128/295 (42%), Gaps = 43/295 (14%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLAFASA 73
+ R++ A IQ R GP ++Q D KLL ++IP+ LF + P +A S
Sbjct: 50 LEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISI 109
Query: 74 IVAALLLPYGGVIPLKLGYNLIVFFYAIL--MVSVFLMLAGFSVQNAFSHLGSAREMMLI 131
++ ++P+G + L ++ VFF+ + + V L+++G+ N +S LG R
Sbjct: 110 FLSYSVIPFGDHLVLA-DLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQS 168
Query: 132 LTVE-PLLAIVYGI------LAYNAGSLDIGEIIS-------NLHLTPSLIVAYAILAYS 177
++ E PL V I L+ + ++DI E S NL P + + + S
Sbjct: 169 ISYEIPLALCVLSISLRVIRLSNSLSTVDIVEAQSKYGFWGWNLWRQP---IGFIVFLIS 225
Query: 178 MYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL------- 230
E +PFD+ EAE E++ G EYSG G+F A ++ F L
Sbjct: 226 SLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFTVASYLNLLVSSLFVTVLYLGGWNL 285
Query: 231 -----VVLPLVPITTQAK---ALLALLLQLLLTLALYPVIASLEATNARLRIDQV 277
V L I + K L+ + + L T + + T RLR+DQ+
Sbjct: 286 SIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQL 340
>gb|AAA70292.1| (M63034) NADH dehydrogenase (ubiquinone) [Oenothera berteriana]
Length = 331
Score = 69.5 bits (167), Expect = 5e-11
Identities = 80/312 (25%), Positives = 142/312 (44%), Gaps = 39/312 (12%)
Query: 2 IAFTILALGIVLFLPPYLDGIA------RKVKARIQHRRGPP------LMQTWYDLVKLL 49
IA LGI+L P L G+A RKV A +Q R+GP L+Q D +KL+
Sbjct: 9 IAVPAEILGIIL---PLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLI 65
Query: 50 SIPSVIPTR-NW-LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVF 107
+ P+ N+ LF++ P F ++VA ++P+ + L +++ +AI + V+
Sbjct: 66 LKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVY 125
Query: 108 -LMLAGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII-------S 159
++ AG S + ++ LG+ R +++ E + ++ + G + EI+ S
Sbjct: 126 GIITAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGPRNSSEIVMAQKQIWS 185
Query: 160 NLHLTPSLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIK 219
+ L P L++ + S E+ PFD+ EAE E + G EYS +F+ +
Sbjct: 186 GIPLFPVLVMFFI----SRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALFFLGEYAN 241
Query: 220 RFALLWFFVSL------VVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLR 273
+ SL +L L PI + + ++++L L LY + A R R
Sbjct: 242 MILMSGLCTSLSPGGWPPILDL-PIFKKIPGSIWFSIKVILFLFLY---IWVRAAFPRYR 297
Query: 274 IDQVAKVNVRLF 285
DQ+ + ++F
Sbjct: 298 YDQLMGLGRKVF 309
>gi|5835793 NADH dehydrogenase subunit 1 [Erinaceus europaeus]
Length = 317
Score = 69.5 bits (167), Expect = 5e-11
Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 18/307 (5%)
Query: 1 MIAFTILALGI-VLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPS 53
M+ IL L I +L +L I RKV +Q R+GP L+Q D VKL +
Sbjct: 1 MLMINILCLIIPILLAVAFLTLIERKVLGYMQLRKGPNIVGSFGLLQPIADAVKLFTKEP 60
Query: 54 VIPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLML- 110
++P + +LF P LA A++ + +P + + + NL+ F A+ ++V+ +L
Sbjct: 61 ILPITSSLFLFVAAPILAITLALMLWVPMPMPQPL-ININLNLL-FILALSSLAVYSILW 118
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLHLTPSL 167
+G++ + ++ +G R + ++ E LAI+ L GS + I NL L S
Sbjct: 119 SGWASNSKYALIGGLRAVAQTISYEVTLAIILLSLLMFNGSFSLNNFIYTQENLWLLVST 178
Query: 168 IVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFF 227
+ S E+ PFD+ E E+E++ G EY+ +F+ A + ++
Sbjct: 179 WPLMMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN---IIMMN 235
Query: 228 VSLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFA 287
V+L L P + + + + + + + + + A+ R R DQ+ + + F
Sbjct: 236 ALTVILFLAPSNSMYLPEMFTMKFMPMIILMTMLFLWVRASYPRFRYDQLMHLLWKNFLP 295
Query: 288 SIIVFAM 294
+ M
Sbjct: 296 LTLALCM 302
>gb|AAA65487.1| (M57527) NDI [Rana catesbeiana]
Length = 324
Score = 69.1 bits (166), Expect = 6e-11
Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 23/291 (7%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
M +L + +L +L I RK+ +QHR+GP L+Q D VKL +
Sbjct: 6 MYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLFIKEPI 65
Query: 55 IPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLML-A 111
P+ + LF L P LA A A++ + P+ IP I+F AI ++V+ +L +
Sbjct: 66 RPSTSSQLLFILAPTLALALAMI--MWTPFPLPIPYSNLNLSILFILAISSLTVYTILGS 123
Query: 112 GFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAY 171
G++ + ++ +G+ R + ++ E LA++ AG + + T ++ +
Sbjct: 124 GWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQEFTWFILPLW 183
Query: 172 AILAY---SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFV 228
+ S E+ PFD+ E E+E++ G EY+G +F+ A + +
Sbjct: 184 PMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN-------IL 236
Query: 229 SLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASL--EATNARLRIDQV 277
+ L + + L L LL+T A + L A+ R R DQ+
Sbjct: 237 MMNTLSTIIFLGSCMSSLTLTTSLLMTKASILSLCFLWVRASYPRFRYDQL 287
>sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
Length = 325
Score = 69.1 bits (166), Expect = 6e-11
Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 23/291 (7%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
M +L + +L +L I RK+ +QHR+GP L+Q D VKL +
Sbjct: 6 MYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLFIKEPI 65
Query: 55 IPTRN--WLFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLML-A 111
P+ + LF L P LA A A++ + P+ IP I+F AI ++V+ +L +
Sbjct: 66 RPSTSSQLLFILAPTLALALAMI--MWTPFPLPIPYSNLNLSILFILAISSLTVYTILGS 123
Query: 112 GFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISNLHLTPSLIVAY 171
G++ + ++ +G+ R + ++ E LA++ AG + + T ++ +
Sbjct: 124 GWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQEFTWFILPLW 183
Query: 172 AILAY---SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFV 228
+ S E+ PFD+ E E+E++ G EY+G +F+ A + +
Sbjct: 184 PMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN-------IL 236
Query: 229 SLVVLPLVPITTQAKALLALLLQLLLTLALYPVIASL--EATNARLRIDQV 277
+ L + + L L LL+T A + L A+ R R DQ+
Sbjct: 237 MMNTLSTIIFLGSCMSSLTLTTSLLMTKASILSLCFLWVRASYPRFRYDQL 287
>gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippiensis]
>gi|6093544|sp|O47868|NU1M_ALLMI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431951|pir||T11274 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
[similarity] - American alligator mitochondrion
>gi|2916729|emb|CAA73561.1| (Y13113) NADH dehydrogenase
subunit 1 [Alligator mississippiensis]
>gi|3219515|gb|AAD09980.1| (AF069428) NADH dehydrogenase
subunit I [Alligator mississippiensis]
Length = 321
Score = 69.1 bits (166), Expect = 6e-11
Identities = 75/283 (26%), Positives = 127/283 (44%), Gaps = 27/283 (9%)
Query: 12 VLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIP--TRNWLFK 63
+L +L + RK+ +Q R+GP L+Q + D +KL++ +P LF
Sbjct: 16 ILMAVAFLTALERKIMGHMQLRKGPNIVGPLGLLQPFADGLKLITKELTLPLLATPTLFI 75
Query: 64 LYPYLAFASAIVAALLLPYGGVIP-LKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHL 122
L P A A+ LP + L LG L++ + LMV FL +G+S + ++ +
Sbjct: 76 LAPTAALMLALAMWSPLPMPSPLADLNLGL-LLLLAMSSLMVYSFLW-SGWSSNSKYALM 133
Query: 123 GSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEIISN-------LHLTPSLIVAYAILA 175
G+ R + ++ E LAI+ + +G + + L PS+++ Y
Sbjct: 134 GAMRAVAQTISYEVTLAIIVLSIVLLSGGFSLHTLTVTQEPLYLALATWPSMMMWYT--- 190
Query: 176 YSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPL 235
S E+ PFD+ E E+E++ G EYS +F+ A + + +L + P
Sbjct: 191 -STLAETNRAPFDLTEGESELVSGFNVEYSASPFALFFLAEYANIMLMNTLTTTLFLSPS 249
Query: 236 VPITTQAKALLALLLQ-LLLTLALYPVIASLEATNARLRIDQV 277
P A +AL+ + LLLT++ V AS R R DQ+
Sbjct: 250 TPTFLPALFTIALMSKALLLTMSFLWVRASY----PRFRYDQL 288
>sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2147754|pir||S62765 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Cyanidium caldarium) mitochondrion
>gi|758181|emb|CAA88775.1| (Z48930) NADH dehydrogenase
subunit 1 [Cyanidium caldarium]
Length = 344
Score = 68.7 bits (165), Expect = 8e-11
Identities = 56/211 (26%), Positives = 104/211 (48%), Gaps = 18/211 (8%)
Query: 18 YLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTRN--WLFKLYPYLA 69
YL I RK+ IQ R+GP L+Q D +KLL + +P ++F + P L
Sbjct: 40 YLTLIERKIIGSIQKRKGPNIVGIFGLLQPIADGLKLLLKETSLPNSANIFIFIIAPILT 99
Query: 70 FASAIVAALLLPYGGV---IPLKLGYNLIVFFYAILMVSVF-LMLAGFSVQNAFSHLGSA 125
F A+ A ++P+ + L +G I++ AI + V+ ++++G++ + ++ LG
Sbjct: 100 FFLALCAWAIMPFNEINFYSNLNIG---ILYLLAISSLGVYGIIISGWASNSKYAFLGGL 156
Query: 126 REMMLILTVEPLLAIVYGILAYNAGSLDIGEII---SNLHLTPSLIVAYAILAYSMYVES 182
R I++ E + ++ + +G+L++ EI+ N+ L + + S E+
Sbjct: 157 RSAAQIISYEVSIGLIIINVLLCSGTLNLKEIVLAQQNIWYIFPLFPLFLMFFISSLAET 216
Query: 183 GFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
PFD+ EAE E++ G EYS +F+
Sbjct: 217 NRSPFDLPEAEAELVAGYNVEYSAMGFALFF 247
>gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]
>gi|6692648|gb|AAF24791.1|U17009_24 (U17009) NADH
dehydrogenase subunit 1 [Phytophthora infestans]
Length = 326
Score = 68.7 bits (165), Expect = 8e-11
Identities = 66/228 (28%), Positives = 114/228 (49%), Gaps = 19/228 (8%)
Query: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSV 54
++ F IL L +++ + Y + RKV A IQ RRGP L+Q D +KL ++
Sbjct: 5 ILKFLILVLPLLIAVA-YFTLVERKVLASIQRRRGPNVVGTFGLLQPLADGLKLFVKETI 63
Query: 55 IPTRN--WLFKLYPYLAFASAIVAALLLPYG-GVIPLKLGYNLIVFFYAILMVSVF-LML 110
+P+ LF P LAF ++++ ++P G G+ +L I++ AI + V+ +++
Sbjct: 64 LPSNADVILFIFAPILAFFLSLLSWTVIPLGFGMFFTELNIG-ILYLLAISSLGVYGIII 122
Query: 111 AGFSVQNAFSHLGSAREMMLILTVEPLLAIVYGILAYN--AGSLDIGEII---SNLHLTP 165
G+S + +S LG+ R +++ E L I + IL+ A SL++ I+ +
Sbjct: 123 GGWSSNSKYSFLGALRSTAQMISYE--LTIGFSILSVIICAKSLNLISIVLAQKTVWYCF 180
Query: 166 SLIVAYAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFY 213
L + I S E+ PFD+ EAE E++ G EYS +F+
Sbjct: 181 PLFPIFLIFFISCLAETNRHPFDLPEAEAELVSGYNVEYSAMGFALFF 228
>gb|AAF63419.1|AF150756_1 (AF150756) NADH dehydrogenase subunit 1 [Pagurus longicarpus]
Length = 310
Score = 68.7 bits (165), Expect = 8e-11
Identities = 77/294 (26%), Positives = 133/294 (45%), Gaps = 32/294 (10%)
Query: 22 IARKVKARIQHRRGPP------LMQTWYDLVKLLSIPSVIPTR-NWL-FKLYPYLAFASA 73
+ RK+ IQ R+GP L+Q + D VKL +P+ N+L + L P + +
Sbjct: 24 LERKILGYIQIRKGPNKVGYMGLLQPFADAVKLFLKEQTVPSMSNFLPYYLSPVFSLFIS 83
Query: 74 IVAALLLPY-GGVIPLKLGYNLIVFFYAILMVSVFLML-AGFSVQNAFSHLGSAREMMLI 131
++ +++PY G++ +G I+FF L + V+ L AG+S +S LGS R
Sbjct: 84 LLVWMVMPYESGMVSFNMG---ILFFLCCLSLGVYSTLSAGWSSNCKYSMLGSLRAAAQT 140
Query: 132 LTVEPLLAIVYGILAYNAGSLDIG------EIISNLHLTPSLIVAYAILAYSMYVESGFV 185
++ E LAI+ L + G ++G E L LT L + + S E+
Sbjct: 141 ISYEVSLAIILLSLIFLVGGFNLGLFNLYQENFWLLWLTFPLSMMWLA---SCLAETNRT 197
Query: 186 PFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSLVVLPLVPITTQAKAL 245
PFD AE E+E++ G EYS + + A +A + F L L + +
Sbjct: 198 PFDFAEGESELVSGFNTEYSSGGFALIFMA----EYASILFMSMLFALFFLGGSP----- 248
Query: 246 LALLLQLLLTLALYPVIASLEATNARLRIDQVAKVNVRLFFASIIVFAMSFLGW 299
L+ + T+ + V + T RLR D++ + + F + + + F+G+
Sbjct: 249 -CSLMFYIKTVFIAFVFIWVRGTLPRLRYDKLMYLAWKSFLPVSLNYLIFFMGF 301
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.146 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96869563
Number of Sequences: 2977
Number of extensions: 3831161
Number of successful extensions: 16066
Number of sequences better than 1.0e-10: 85
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 15929
Number of HSP's gapped (non-prelim): 94
length of query: 299
length of database: 189,106,746
effective HSP length: 52
effective length of query: 247
effective length of database: 157,985,422
effective search space: 39022399234
effective search space used: 39022399234
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)