BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1394 (hyfG) DE:HYDROGENASE-4 COMPONENT G (EC 1.-.-.-)
(588 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyr... 1220 0.0
sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (... 453 e-126
dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURS... 440 e-122
sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||... 440 e-122
pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 297 2e-79
pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Py... 291 2e-77
emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri] 267 3e-70
pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jan... 243 3e-63
sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|112... 242 9e-63
pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jan... 241 2e-62
pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium ... 235 1e-60
emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobac... 229 5e-59
pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium ... 219 1e-55
gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit... 213 4e-54
emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobac... 208 1e-52
pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 200 4e-50
gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus ... 200 4e-50
pir||G70749 probable hycE protein - Mycobacterium tuberculosis (... 198 2e-49
pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 196 8e-49
emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D ... 196 8e-49
sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUI... 187 2e-46
gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 186 5e-46
sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 183 3e-45
pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE... 182 1e-44
pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 4... 180 3e-44
pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 180 3e-44
gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)... 180 3e-44
pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chai... 177 3e-43
gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays] >gi|1288... 175 1e-42
pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyroc... 175 2e-42
emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 ... 174 2e-42
gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa] >gi|... 174 3e-42
sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SU... 174 3e-42
sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUB... 173 4e-42
gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|... 173 4e-42
gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thalian... 172 1e-41
gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma vir... 169 6e-41
sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUI... 168 1e-40
sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 168 1e-40
gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum] ... 167 4e-40
pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolo... 166 7e-40
gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea] ... 162 7e-39
pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - P... 161 3e-38
sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 159 6e-38
gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase ... 159 8e-38
pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 159 8e-38
pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain ... 159 1e-37
pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (s... 159 1e-37
sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 157 4e-37
pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 152 1e-35
gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica] >gi... 151 2e-35
pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - N... 150 4e-35
emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica] 149 7e-35
sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 148 1e-34
gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melan... 148 2e-34
gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melano... 145 1e-33
gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas american... 143 4e-33
sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 143 4e-33
gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina] >gi... 142 9e-33
gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7... 141 2e-32
gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castella... 141 2e-32
sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 141 2e-32
gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroid... 141 2e-32
gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensi... 141 2e-32
dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.... 140 4e-32
emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Esc... 140 4e-32
sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 139 6e-32
gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi] >gi... 139 8e-32
gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]... 139 1e-31
dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella pa... 138 1e-31
pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli 138 2e-31
gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit... 137 3e-31
sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUI... 137 4e-31
sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 134 2e-30
emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA)... 134 2e-30
pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 134 3e-30
dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physaru... 133 5e-30
pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 133 6e-30
gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideu... 132 8e-30
sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 132 1e-29
pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 ... 132 1e-29
sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 132 1e-29
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)... 132 1e-29
sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 132 1e-29
pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 132 1e-29
gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Protothe... 131 2e-29
sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 ... 129 7e-29
pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegan... 124 2e-27
gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris] >gi|9087... 120 4e-26
sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 119 1e-25
pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum... 118 2e-25
sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 116 9e-25
emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum] 114 3e-24
sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 113 6e-24
sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 107 4e-22
gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia] 107 4e-22
gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobu... 106 6e-22
gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis... 84 5e-15
emb|CAA43500.1| (X61202) F420-reducing hydrogenase subunit [Meth... 76 8e-13
>pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyrococcus abyssi
(strain Orsay) >gi|5458891|emb|CAB50378.1| (AJ248287)
HYDROGENASE-4 COMPONENT G (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 588
Score = 1220 bits (3123), Expect = 0.0
Identities = 588/588 (100%), Positives = 588/588 (100%)
Query: 1 MECKACEKGKCRNANLEEVLSEREGLLEFYEEFKEHIHECKRMSYGQYMFVIDKEVLPKA 60
MECKACEKGKCRNANLEEVLSEREGLLEFYEEFKEHIHECKRMSYGQYMFVIDKEVLPKA
Sbjct: 1 MECKACEKGKCRNANLEEVLSEREGLLEFYEEFKEHIHECKRMSYGQYMFVIDKEVLPKA 60
Query: 61 VLWWHNHPKFKETHLSTAVGTDETPLNGKFAYMPFLSVQVEPFNMDRNYWVFLKAYLDPE 120
VLWWHNHPKFKETHLSTAVGTDETPLNGKFAYMPFLSVQVEPFNMDRNYWVFLKAYLDPE
Sbjct: 61 VLWWHNHPKFKETHLSTAVGTDETPLNGKFAYMPFLSVQVEPFNMDRNYWVFLKAYLDPE 120
Query: 121 NPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYPLRKCMDYRYS 180
NPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYPLRKCMDYRYS
Sbjct: 121 NPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYPLRKCMDYRYS 180
Query: 181 PMAEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKI 240
PMAEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKI
Sbjct: 181 PMAEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKI 240
Query: 241 GEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHN 300
GEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHN
Sbjct: 241 GEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHN 300
Query: 301 HLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKE 360
HLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKE
Sbjct: 301 HLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKE 360
Query: 361 EILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDA 420
EILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDA
Sbjct: 361 EILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDA 420
Query: 421 RLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP 480
RLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP
Sbjct: 421 RLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP 480
Query: 481 VGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVAD 540
VGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVAD
Sbjct: 481 VGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVAD 540
Query: 541 APLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEMV 588
APLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEMV
Sbjct: 541 APLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEMV 588
>sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE-3 COMPONENT E) >gi|78775|pir||S08623
hydrogenase (EC 1.18.99.1) 3 chain 5 precursor -
Escherichia coli >gi|41684|emb|CAA35550.1| (X17506) hycE
[Escherichia coli] >gi|882614|gb|AAA69231.1| (U29579)
formate hydrogenlyase subunit 5 [Escherichia coli]
>gi|1789076|gb|AAC75763.1| (AE000356) large subunit of
hydrogenase 3 (part of FHL complex) [Escherichia coli
K12] >gi|1093498|prf||2104213E hycE gene [Escherichia
coli]
Length = 569
Score = 453 bits (1153), Expect = e-126
Identities = 225/515 (43%), Positives = 331/515 (63%), Gaps = 14/515 (2%)
Query: 75 LSTAVGTDETPLNGKFAYMPFLSVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAA 134
LS G DE LNG +A LS++ W+ ++ +D PE+PSV +PAA
Sbjct: 57 LSVLFGNDERKLNGHYAVYYVLSME-----KGTKCWITVRVEVDANKPEYPSVTPRVPAA 111
Query: 135 LWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYPLRK-CMDYRYSPMAEPKIELKK-- 191
+W EREV+D+ G + PD RRLVLP+DWPD +YPLRK MDYR P E +
Sbjct: 112 VWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFI 171
Query: 192 ---PPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYN 248
+ + VP+GPLH+ +EP HF+LFV GE I+D DYR FY HRG+EK+ E R+ YN
Sbjct: 172 NELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYN 231
Query: 249 QVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIA 308
+V FL++R+CGICG+ HS +Y ++E +++P+RA+ IR +LLE+ER+H+HLL +G+A
Sbjct: 232 EVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLA 291
Query: 309 AHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVRE 368
H G+D+GFM +R+RE M + E LTG RK YG+N++GG+RRD+L + ++ ++
Sbjct: 292 CHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQ 351
Query: 369 IREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKT 428
+R EV+ ++V+L+T +R G+G L ++A++FS +GP RASG D R D
Sbjct: 352 MRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADH---P 408
Query: 429 ATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYE 488
Y L +V + DV++R+ VR++E++ ++ +++ +D +PGG +MV +
Sbjct: 409 FVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHR 468
Query: 489 EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASI 548
ALGF EA RG+ +H+ MTG+ K+YRW+ RA TY N P + ML+G V+DAPLII S+
Sbjct: 469 FALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSL 528
Query: 549 DPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKR 583
DPCYSCT+R+ +VDVR K KV+ E SI+R
Sbjct: 529 DPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563
>dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE 3, SUBUNIT 5). [Escherichia coli]
Length = 570
Score = 440 bits (1119), Expect = e-122
Identities = 232/562 (41%), Positives = 344/562 (60%), Gaps = 38/562 (6%)
Query: 32 EFKEHIHECKRMSYGQYMFVIDKEVLPKAVLW-WHNHPKFKETHLSTAVGTDETPLNGKF 90
+F + + +R + Q + +LP V + ++ H + L G DE LNG +
Sbjct: 35 QFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW----LPVLFGNDERTLNGHY 90
Query: 91 AYMPFLSVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAI 150
A LS++ W+ +KA +D ++ EFPSV +PAA+W ERE++D+ G +
Sbjct: 91 AVYYALSMEGA-----EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 145
Query: 151 NHPDPRRLVLPEDWPDGVYPLRK-CMDYRYSPMAEPKIELKKPP---EGTS---TVPMGP 203
PD RRLVLP+DWP+ ++PLRK MDYR P EP + + P EG S +P+GP
Sbjct: 146 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP--EPTTDSETYPFINEGNSDARVIPVGP 203
Query: 204 LHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGY 263
LH+ +EP HF+LFV GE+IVD DYR FY HRG+EK+ E R+ YN+V FL++R+CGICG+
Sbjct: 204 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 263
Query: 264 QHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWR 323
HSV+Y ++E +E+P RA IR++LLE+ER+H+HLL +G++ H VG+DTGFM +R
Sbjct: 264 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 323
Query: 324 IREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNT 383
+RE M + E L G+RK YG+N++GGVRRDIL ++ + L++VRE+R +V +E++L T
Sbjct: 324 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 383
Query: 384 NTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYK 443
+R +G+GIL ++A++ P A Y + + +
Sbjct: 384 PNMEQRTQGIGILDRQIARDLRFDHPYA-------------------DYGNIPKTLFTFT 424
Query: 444 EGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEAHRGEVVH 503
GDV +RV+VR+ E F+S+ ++E +D MP ++ + ALGF EA RGE VH
Sbjct: 425 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVH 484
Query: 504 YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQIVDV 563
+ M G+ K++RW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+RV +VDV
Sbjct: 485 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDV 544
Query: 564 RSGKVKVLTESEFNELSIKRSK 585
R + K + E I R++
Sbjct: 545 RKRQSKTVPYKEIERYGIDRNR 566
>sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||F65024 hypothetical
protein b2487 - Escherichia coli (strain K-12)
>gi|1616956|gb|AAB88569.1| (M63654) HyfG [Escherichia
coli] >gi|1788832|gb|AAC75540.1| (AE000335) hydrogenase
4 subunit [Escherichia coli K12]
Length = 555
Score = 440 bits (1119), Expect = e-122
Identities = 232/562 (41%), Positives = 344/562 (60%), Gaps = 38/562 (6%)
Query: 32 EFKEHIHECKRMSYGQYMFVIDKEVLPKAVLW-WHNHPKFKETHLSTAVGTDETPLNGKF 90
+F + + +R + Q + +LP V + ++ H + L G DE LNG +
Sbjct: 20 QFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW----LPVLFGNDERTLNGHY 75
Query: 91 AYMPFLSVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAI 150
A LS++ W+ +KA +D ++ EFPSV +PAA+W ERE++D+ G +
Sbjct: 76 AVYYALSMEGA-----EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130
Query: 151 NHPDPRRLVLPEDWPDGVYPLRK-CMDYRYSPMAEPKIELKKPP---EGTS---TVPMGP 203
PD RRLVLP+DWP+ ++PLRK MDYR P EP + + P EG S +P+GP
Sbjct: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP--EPTTDSETYPFINEGNSDARVIPVGP 188
Query: 204 LHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGY 263
LH+ +EP HF+LFV GE+IVD DYR FY HRG+EK+ E R+ YN+V FL++R+CGICG+
Sbjct: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248
Query: 264 QHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWR 323
HSV+Y ++E +E+P RA IR++LLE+ER+H+HLL +G++ H VG+DTGFM +R
Sbjct: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308
Query: 324 IREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNT 383
+RE M + E L G+RK YG+N++GGVRRDIL ++ + L++VRE+R +V +E++L T
Sbjct: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368
Query: 384 NTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYK 443
+R +G+GIL ++A++ P A Y + + +
Sbjct: 369 PNMEQRTQGIGILDRQIARDLRFDHPYA-------------------DYGNIPKTLFTFT 409
Query: 444 EGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEAHRGEVVH 503
GDV +RV+VR+ E F+S+ ++E +D MP ++ + ALGF EA RGE VH
Sbjct: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVH 469
Query: 504 YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQIVDV 563
+ M G+ K++RW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+RV +VDV
Sbjct: 470 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDV 529
Query: 564 RSGKVKVLTESEFNELSIKRSK 585
R + K + E I R++
Sbjct: 530 RKRQSKTVPYKEIERYGIDRNR 551
>pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257861|dbj|BAA30544.1| (AP000006) 427aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 427
Score = 297 bits (753), Expect = 2e-79
Identities = 171/417 (41%), Positives = 252/417 (60%), Gaps = 26/417 (6%)
Query: 189 LKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYN 248
+ K E +P GP+H G+EEP F L + GE IV+VD + Y+ RGI+ I R Y
Sbjct: 1 MSKKVEYWVKIPFGPIHPGLEEPEKFILTLDGERIVNVDIKLGYNLRGIQWIAFRR-NYV 59
Query: 249 QVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIA 308
Q+++LAERICGIC + H+ +Y A+E +A +E+P+RA YIR ++ ELERIH+HLL +G+
Sbjct: 60 QLMYLAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVV 119
Query: 309 AHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVRE 368
H +GYDT W RE VM +E +TGNR Y M +GGVRRDI + K +L +++
Sbjct: 120 GHDIGYDTVLHLTWLAREKVMDALEAITGNRVNYSMMTIGGVRRDIEEKHKRLLLDMIKY 179
Query: 369 IREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKT 428
RE + + +V L+ +T R ++P K+A E +GPT R SG K DAR ++
Sbjct: 180 YREIMPQIEDVFLHDSTIEARLRNCAVVPRKLAIEMGAVGPTGRGSGIKDDARW---SEK 236
Query: 429 ATAYNELDWKVPVYKE--------GDVLARVLVRMDELFESIWIVEQVIDQMPGG----- 475
Y +L K PV E GDV R VR+ E+++S+ ++E +DQMP G
Sbjct: 237 LGVYPDLGIK-PVMPEDVTGEKARGDVYDRTAVRIGEIYQSLELIEHALDQMPEGKIKAF 295
Query: 476 ---DVMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNK--VYRWKVRAPTYNNLPAVP 530
+++V +L E +G EA RGE++HYV G+K + RWK+R PT+ NL +
Sbjct: 296 PKDNILVAKLKLLGDGEGIGRYEAPRGELIHYV-KGKKGRDGPVRWKMREPTFPNLFTIA 354
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEM 587
+ L+G +AD + IASIDPC SCT+RV + V+ GK +LTE + +LSI++++E+
Sbjct: 355 KGLEGNQLADVVVAIASIDPCLSCTDRVAV--VKEGKKIILTEKDLLKLSIQKTREI 409
>pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Pyrococcus abyssi
(strain Orsay) >gi|5458146|emb|CAB49635.1| (AJ248285)
CO-induced hydrogenase related, subunit H [Pyrococcus
abyssi]
Length = 426
Score = 291 bits (736), Expect = 2e-77
Identities = 167/407 (41%), Positives = 249/407 (61%), Gaps = 26/407 (6%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
VP GP+H G+EEP F L + GE IV+VD + Y+ RGI+ I R Y Q++++AERIC
Sbjct: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRR-NYVQLMYVAERIC 68
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC + H+ +Y A+E +A +E+P+RA YIR ++ ELERIH+HLL +G+ H +GYDT
Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
W RE VM ++E +TGNR Y M +GGVRRDI + + +L +++ RE + + +
Sbjct: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
V L+ +T R I+P K+A E +GPT R SG + DAR ++ Y +L K
Sbjct: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARW---SEKLGVYPDLGIK 245
Query: 439 VPVYKE--------GDVLARVLVRMDELFESIWIVEQVIDQMPGG--------DVMVPVG 482
P+ E GDV R VR+ E+++S+ ++E +DQ+P G +V+V
Sbjct: 246 -PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKL 304
Query: 483 RLPEYEEALGFTEAHRGEVVHYVMTGEKNK--VYRWKVRAPTYNNLPAVPEMLKGYHVAD 540
+L E +G EA RGE+VHYV G+K + RWK+R PT+ NL A+ + L+G +AD
Sbjct: 305 KLLGDGEGIGRYEAPRGELVHYV-KGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLAD 363
Query: 541 APLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEM 587
+ IASIDPC SCT+RV + + K +LTE + +LSI++++E+
Sbjct: 364 VVVAIASIDPCLSCTDRVAV--ITGDKKVILTEKDLLKLSIQKTREI 408
>emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri]
Length = 358
Score = 267 bits (675), Expect = 3e-70
Identities = 143/362 (39%), Positives = 209/362 (57%), Gaps = 5/362 (1%)
Query: 196 TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
T+ +P GP H + EP KL + +V V Y HRG+E + +NQ ++ E
Sbjct: 2 TTVIPFGPQHPVLPEPVSLKLEIDDNVVVGVLPSLGYVHRGLETFINTK-DFNQTTYVCE 60
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
RICGIC H ++Y +E+L D EIP+RA+YIR ++ EL R+H+HLLW+G+ A G++
Sbjct: 61 RICGICSALHGITYTRTVEKLFDTEIPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFE 120
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKR 375
+ F W+ RE V+ + ER+ GNR + ++ VGGV RD+ + +L++ + E+K
Sbjct: 121 SLFYECWKYREEVLDVAERICGNRVIHSISKVGGVTRDLTKEHIDMLLKMCDSLETEIKN 180
Query: 376 FLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNEL 435
+V +N T +R G+ L +VA E GPT R SG ID R T Y +L
Sbjct: 181 IEKVFVNNYTVKQRLVGLATLSKQVAYEVGTAGPTLRGSGNAIDVR---ETPDWDIYKDL 237
Query: 436 DWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTE 495
+K V K+GD AR VR+ EL S+ I+ I +MP G++ V V P EA+ TE
Sbjct: 238 GFKTAVEKDGDCYARTKVRITELLNSLTIIRNAISKMPEGEIEVRVKGFPT-GEAIMRTE 296
Query: 496 AHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCT 555
RGEV++YV K+ R KVR PT+ N+P++ ML G +AD P+++ +IDPC SCT
Sbjct: 297 QPRGEVIYYVKGNGTKKLERLKVRTPTFANIPSLLLMLPGVKLADVPIVVLTIDPCVSCT 356
Query: 556 ER 557
ER
Sbjct: 357 ER 358
>pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1499869|gb|AAB99031.1| (U67545) formate
hydrogenlyase, subunit 5 [Methanococcus jannaschii]
Length = 377
Score = 243 bits (615), Expect = 3e-63
Identities = 135/367 (36%), Positives = 213/367 (57%), Gaps = 8/367 (2%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ +GP+H + EP +LF++ E I + + ++RGIE I EG L ++ L+E+IC
Sbjct: 10 IAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKIC 68
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC + H ER D+E+P+RA YIR ++ ELER+H+H+L G A ++G++T
Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRR--DILDYRKEEILRVVREIREEVKRF 376
A+ IREP+M ++ +TG R QY I+GG+R +I + + +L + + E +K+
Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188
Query: 377 LEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
LE +N + R + VG+L K AK+ LGPTAR SG D R Y+ +
Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMR---KMGQVPVYDNFE 245
Query: 437 WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--PVGRLPEYEEALGFT 494
++ V+ +GDV +R+ VR E FES+ I+ Q + +P D + P L E++ +
Sbjct: 246 FEEIVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYN 305
Query: 495 EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSC 554
EA RG+V + E +V + K+R PT NL + +L G+HV+DA LIIAS DPC++C
Sbjct: 306 EAQRGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTC 365
Query: 555 TERVQIV 561
T+R+ +V
Sbjct: 366 TDRMIVV 372
>sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|11254539|pir||T51319
carbon-monoxide dehydrogenase (EC 1.2.99.2) cooH chain
[similarity] - Rhodospirillum rubrum
>gi|1498746|gb|AAC45121.1| (U65510) CooH [Rhodospirillum
rubrum]
Length = 361
Score = 242 bits (611), Expect = 9e-63
Identities = 131/367 (35%), Positives = 207/367 (55%), Gaps = 13/367 (3%)
Query: 196 TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
T T+P+GPLH+ +EEP +F++ V GE++V VD + HRGIE + R Y ++ L E
Sbjct: 3 TYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-LTE 61
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
R+C +C H +Y MA+E + + +P RA+Y+R + E +R+ +H+ V I AH+VG+D
Sbjct: 62 RVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFD 121
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDI----LDYRKEEILRVVREIRE 371
+ FMH RE + E + GNR +GGV+ D+ DY ++ ++ +R+
Sbjct: 122 SLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRD 181
Query: 372 EVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATA 431
E+ + + + + R G+G+L ++ ++GP AR SG D R
Sbjct: 182 EI---IPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVR---KQAPYAV 235
Query: 432 YNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV-PVGRLPEYEEA 490
Y+ LD+++ + + GDV +R +VR E SI ++ Q + MP G PV +P EA
Sbjct: 236 YDRLDFEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPA-GEA 294
Query: 491 LGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDP 550
+ TEA RGE+++Y+ T ++ R K R PTY N A+ M+ G ++D PLI+ SIDP
Sbjct: 295 VAKTEAPRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDP 354
Query: 551 CYSCTER 557
C SCTER
Sbjct: 355 CISCTER 361
>pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1591218|gb|AAB98504.1| (U67501) carbon monoxide
dehydrogenase, hydrogenase subunit CooH (cooH)
[Methanococcus jannaschii]
Length = 380
Score = 241 bits (608), Expect = 2e-62
Identities = 148/381 (38%), Positives = 215/381 (55%), Gaps = 19/381 (4%)
Query: 194 EGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFL 253
E +T+P+GP+H ++EP KL + GE+ VD + Y HRGIEKI EG+ + + L
Sbjct: 3 ENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGI-HL 61
Query: 254 AERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVG 313
AER+CGIC Y H++++A IE ++ +EIPD+A+Y+R + ELERIH+HL+ + +
Sbjct: 62 AERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIE 121
Query: 314 YDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEV 373
++T M +RE +M LME +TGNR G N++GGVRRDI +EI + + +E+
Sbjct: 122 HETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDEL 181
Query: 374 KRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASG-RKIDARLDQATKTATAY 432
K +EV R++ +GILPY +GP R SG + D RL +T Y
Sbjct: 182 KNIIEVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHST-----Y 236
Query: 433 NELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMP--GGDVMVPV---GRLPEY 487
EL +K +EGD AR++VR +E+ ES+ ++ + ++ GD+ V G E+
Sbjct: 237 QELKFKPVWREEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEW 296
Query: 488 EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGY-HVADAPLIIA 546
EA RGEV + + + + R +R PT NL A MLK VADA
Sbjct: 297 R-----NEAPRGEVTYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYT 351
Query: 547 SIDPCYSCTERVQIVDVRSGK 567
SIDPC SCTER IV V+ GK
Sbjct: 352 SIDPCVSCTERC-IVAVKDGK 371
>pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621460|gb|AAB84904.1| (AE000824) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 235 bits (593), Expect = 1e-60
Identities = 138/375 (36%), Positives = 214/375 (56%), Gaps = 10/375 (2%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+P+GP+H G +EP K+ +GE+++ + Y HRGIE++ + T+ + ++L+ER+C
Sbjct: 3 LPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNK-TWQKAIYLSERVC 61
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC Y H+ ++A A E +++VE P RA+++R L EL+RI +HL+ + ++T F
Sbjct: 62 GICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMF 121
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
M+ +REPVM +E LTGNR G N+VGGVR D + I ++ ++ E R++E
Sbjct: 122 MYMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASESHLSMIREIIVDLEREFDRYVE 181
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
+ + R+ VG + + A++ +GP RASG + D R D T + LD++
Sbjct: 182 MFEHGPLIGLRSREVGYMSQEEAEKARAVGPIGRASGIRYDFREDHPTYR----DHLDFR 237
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEAHR 498
+GD ARV+ R DE+ SI +++QVID MPGG V V Y E EA R
Sbjct: 238 TIWRDDGDNFARVMNRFDEIRVSIDLIKQVIDDMPGGPVRTKVDVKAGYGE--WRNEAPR 295
Query: 499 GEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE-MLKGY-HVADAPLIIASIDPCYSCTE 556
GEV + + T N + +R P+ N+ A + ML+ VADA AS DPC +C E
Sbjct: 296 GEVAYMIET-NGNLIKNISIRTPSIMNIDACAKYMLRDVATVADAVATYASADPCIACAE 354
Query: 557 RVQIVDVRSGKVKVL 571
RV +VD SG+ ++L
Sbjct: 355 RVMVVDEESGEREIL 369
>emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 229 bits (579), Expect = 5e-59
Identities = 136/375 (36%), Positives = 212/375 (56%), Gaps = 10/375 (2%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+P+GP+H G +EP K+ +GE+++ + Y HRGIE++ + T+ + ++L+ER+C
Sbjct: 3 LPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNK-TWQKAIYLSERVC 61
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC Y H+ ++A A E +++VE P RA+++R L EL+RI +HL+ + ++T F
Sbjct: 62 GICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMF 121
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
M+ +REPVM +E LTGNR G N+VGGVR D + I ++ ++ E R++E
Sbjct: 122 MYMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASEDHLSRIREIIVDLEREFDRYVE 181
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
+ + R+ VG + + A++ +GP RASG + D R D T + LD++
Sbjct: 182 MFEHGPLIGLRSRDVGYMSREEAEKARAVGPIGRASGIRYDFREDHPTYR----DHLDFR 237
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEAHR 498
EGD ARV+ R DE+ SI +++QVID +P G V V Y E EA R
Sbjct: 238 TIWRDEGDNFARVMNRFDEIRVSIDLIKQVIDSIPSGPVRRKVDVKAGYGE--WRNEAPR 295
Query: 499 GEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE-MLKGY-HVADAPLIIASIDPCYSCTE 556
GEV + + T N + +R P+ N+ A + ML+ VADA AS DPC +C E
Sbjct: 296 GEVAYMIET-NGNLIKNISIRTPSIMNIDACAKYMLRDVATVADAVATYASADPCIACAE 354
Query: 557 RVQIVDVRSGKVKVL 571
RV ++D GK ++L
Sbjct: 355 RVVVLDENEGKREIL 369
>pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622350|gb|AAB85727.1| (AE000891) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 381
Score = 219 bits (551), Expect = 1e-55
Identities = 131/369 (35%), Positives = 207/369 (55%), Gaps = 12/369 (3%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ MGP+H EP +LFV+ E + D + +HRGIE+I EG L + L E++C
Sbjct: 15 IAMGPVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEG-LPVEKANSLTEKVC 73
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC H + + E+ VEIP+RA YIR ++ ELER+H+HLL++ ++G++T
Sbjct: 74 GICSGVHLWNSVLVAEKGLGVEIPERASYIRIIIGELERLHSHLLYLAHGNEVLGHETFS 133
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGV--RRDILDYRKEEILRVVREIREEVKRF 376
M + IRE VM L+ + GNR QYG+ I+GG+ R D+ + + + I + I E+V+ F
Sbjct: 134 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKVQRIREGIDLIEEKVEAF 193
Query: 377 LEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
E + + R GV + K A V GPT RA+G +D R + Y+ +
Sbjct: 194 AERFTSDPMIMSRITGVCPISRKDALRLHVTGPTLRATGVDLDIR-----REMPCYDPFE 248
Query: 437 WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEA 496
++V EGDV A +L+R+ E+FES+ I+ Q + +PGG V+ + + + EA
Sbjct: 249 FEVITQDEGDVRANLLMRVLEIFESVKIIRQALRDLPGGKVVDRSWEMQDTGIIKSYVEA 308
Query: 497 HRGEVVH-YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCT 555
RG + H Y + E +V +R P+ +N+ A+ G+H+ DA L I DPC++CT
Sbjct: 309 PRGRLYHSYAI--EDGRVRGSVIRTPSMSNIGAMQYACIGHHITDAQLGIVQCDPCFTCT 366
Query: 556 ER-VQIVDV 563
+R ++IVD+
Sbjct: 367 DRAIEIVDL 375
>gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit FpoD [Methanosarcina mazei]
Length = 374
Score = 213 bits (537), Expect = 4e-54
Identities = 129/368 (35%), Positives = 202/368 (54%), Gaps = 14/368 (3%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V +GP H P L +KGE I+D + Y H+GIEKI E R TY Q + + +RIC
Sbjct: 12 VHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENR-TYLQGITIVDRIC 70
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ + Y +E+L D+E P+RA+YIR +L EL R+ +HLL +G +G+ + F
Sbjct: 71 YLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIGFVSMF 130
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
M+ + RE ++ L++ +TG R + GGVR D+ + KE+ + V+ ++++ ++ + E
Sbjct: 131 MYTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLPEGFKEKTIPVLNKLKKVIRDYEE 190
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
+ + + +R G+G+L AK V GP RA+G D R ++ Y +LD+K
Sbjct: 191 MFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLRATGVPFDIRKNE---PYLVYRDLDFK 247
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVM---------VPVGRLPEYEE 489
V GD ARV VR++E+ ESI+I+EQ +D +P G + PV R+P E
Sbjct: 248 VCTETAGDCFARVQVRLNEMRESIYIIEQCLDMIPNGPIFPEGTPYGKRTPVMRVPA-GE 306
Query: 490 ALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASID 549
E RGE+ Y+++ ++ YR KVR P Y L A+P ++ G VAD I S+D
Sbjct: 307 VFHRVEDPRGEMGMYMVSDGSDRPYRVKVRGPYYPTLQALPPLIIGTTVADMVSISGSMD 366
Query: 550 PCYSCTER 557
C S +R
Sbjct: 367 GCTSEVDR 374
>emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 376
Score = 208 bits (524), Expect = 1e-52
Identities = 129/371 (34%), Positives = 204/371 (54%), Gaps = 12/371 (3%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ MG +H EP +LFV+ E + D + +HRGIE+I EG L + L E++C
Sbjct: 12 ITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEG-LPVEKANSLTEKVC 70
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
GIC H + + E+ VEIP+RA YIR ++ ELERIH+HLL++ ++G++T
Sbjct: 71 GICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFS 130
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGV--RRDILDYRKEEILRVVREIREEVKRF 376
M + IRE VM L+ + GNR QYG+ I+GG+ R D+ + + + I + I E+V+ F
Sbjct: 131 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFIEEKVEAF 190
Query: 377 LEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
E + + R GV + K A V GPT RA+G + D R + Y+ +
Sbjct: 191 AERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLRTEM-----PCYDPFE 245
Query: 437 WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEALGFTEA 496
+ V GDV A +L+R+ E+FESI I+ Q + +P G V+ + + + EA
Sbjct: 246 FDVITQDGGDVRANLLMRVLEIFESINIIRQALRDLPDGRVVDRNWEMQDTGIVKSYVEA 305
Query: 497 HRGEVVH-YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCT 555
RG + H Y + E +V +R P+ +N+ A+ G+H+ DA L I DPC++CT
Sbjct: 306 PRGRLYHSYAI--EDGRVRGSIIRTPSMSNIGAMQYACIGHHITDAQLGIVQCDPCFTCT 363
Query: 556 ER-VQIVDVRS 565
+R ++I+D+ +
Sbjct: 364 DRAIEIIDLNA 374
>pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD1
[similarity] - Aquifex aeolicus
>gi|2983187|gb|AAC06787.1| (AE000695) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 593
Score = 200 bits (503), Expect = 4e-50
Identities = 155/514 (30%), Positives = 245/514 (47%), Gaps = 76/514 (14%)
Query: 103 FNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPE 162
+N+D V +K N + P++ A W ERE D+ G + H + R + +
Sbjct: 97 YNVDERKRVIVKTRT---NGKLPTIEKLWFAGKWAERECYDMFGIEYEGHENLVRAFMWD 153
Query: 163 DWPDGVYPLRK--------------------------CMDYRYSPMAEPKIE-------- 188
+P +PLRK M+Y P +E
Sbjct: 154 TYP--YFPLRKDFPLEGIPEQELPSLNEVVFGDNLEGLMNYDRMHTRVPTLEDLEVTEKK 211
Query: 189 -LKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTY 247
LKK + + GPLH G F ++GE IV D HRG+EK+ E + Y
Sbjct: 212 RLKKKAQ--IVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEM-Y 268
Query: 248 NQVLFLAERICGICGYQHSVSYAMAIERLADV--EIPDRARYIRTLLLELERIHNHLLWV 305
NQ L +R+ + + ++ +AIERL + ++P +A+YIRT++ EL+RI++HLLW+
Sbjct: 269 NQFLVYTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWL 328
Query: 306 GIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRV 365
G A +G T F++A++ RE +M ++E +TG R +GGVR D+ + E I
Sbjct: 329 GTYALDLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLPEGALEVIKAF 388
Query: 366 VREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQA 425
+++ EE+K + ++ +++R + VGI+ + A V GP R SG D R
Sbjct: 389 IKKFPEELKDWETILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIRGSGIPYDIR---K 445
Query: 426 TKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQ-------------- 471
+ AY+E+++ +PV + GD R LVR++E+ +SI I+EQ + +
Sbjct: 446 FEPYDAYDEVEFDIPVGEIGDCYDRYLVRIEEMKQSIRIIEQCVAKLEKMSKNEPFFYEG 505
Query: 472 --------MPGGDVMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTY 523
+ G V PVG E E RGE+ YV++ YR K+R P+Y
Sbjct: 506 EGKKLKLSLDGIGVKAPVG------EIYSSGENPRGELGFYVVSTGGTSPYRVKIRPPSY 559
Query: 524 NNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
NL P ++K +VADA I+ASIDP T+R
Sbjct: 560 YNLCIYPHLMKDRYVADAVTILASIDPVVGETDR 593
>gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus solfataricus]
Length = 410
Score = 200 bits (503), Expect = 4e-50
Identities = 127/379 (33%), Positives = 206/379 (53%), Gaps = 35/379 (9%)
Query: 202 GPLHMGIEEPA--HFKLFVK--GEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
G L++G + P H ++FVK G+ I DVD Y HR +EK+ E R Y ++ L ER
Sbjct: 28 GELNVGPQHPGSGHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENR-NYMHLIPLVERP 86
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ ++ Y +A+E++ V++P+RA+Y+R+ E+ RI +HL +GI A +G+ TG
Sbjct: 87 AILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTG 146
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
FM + RE + ++E LTG R I GGVR+DI KE ++ + R+ ++ +
Sbjct: 147 FMWGFGDREVWVTILEALTGARVTNSYVIPGGVRKDITQEIKEMTIKAIAYQRKRLEDWK 206
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
++ + R E VG++ + A ++ +GP RASG D R + AY++LD+
Sbjct: 207 KIFFYNPSIRARLENVGVMSRENAIKWGAVGPNLRASGVYYDVR---KIEPYGAYDKLDF 263
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVM-------VPVGRLPEY--- 487
++PVYKEGD LAR LVR++E+ +S+ I+EQ+I +P G+++ +P RL +Y
Sbjct: 264 EIPVYKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPIRLKKYWET 323
Query: 488 -----------------EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
EA+ EA RGE+ +YV++ K YR ++ P+Y +
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELAYYVVSDGSPKPYRLRMITPSYRLIYVFK 383
Query: 531 EMLKGYHVADAPLIIASID 549
E+ KG AD I S+D
Sbjct: 384 ELCKGSRYADLVSIYGSLD 402
>pir||G70749 probable hycE protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405757|emb|CAA98923.1| (Z74410) hycE [Mycobacterium
tuberculosis]
Length = 492
Score = 198 bits (497), Expect = 2e-49
Identities = 148/452 (32%), Positives = 218/452 (47%), Gaps = 29/452 (6%)
Query: 111 VFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYP 170
V L+ + +NPE S+A A ERE+ DL G + + HP PRRLV WPD +P
Sbjct: 57 VELEYVVPADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWPDW-HP 115
Query: 171 LRKCMDYRYSPM-----AEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVD 225
+R D +P A P + ++ P G +P+GP+H G+ EP HF+ V GE IV
Sbjct: 116 MRT--DAGPAPEFTDTGAFPFLAVEGP--GVYEIPVGPVHAGLIEPGHFRFSVAGETIVR 171
Query: 226 VDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRA 285
+ R ++ HRGIEK+ GR + LAERI G H++++++AIE +E+P
Sbjct: 172 LKARLWFVHRGIEKLFHGRPA-TAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEV 230
Query: 286 RYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMN 345
+R L++ELER++NH +G A+ VGY HA RIRE ++ +TG+R G
Sbjct: 231 HRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAI 290
Query: 346 IVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFS 405
GGV L E + + ++ + L + R G +L A
Sbjct: 291 RAGGVALRALPDTDE-----LAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALG 345
Query: 406 VLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIV 465
LG ARASG + DAR++ T E+ +GDVLAR VR DE S +
Sbjct: 346 CLGYVARASGLRSDARVEHPT-IVLPITEIG-----APDGDVLARYTVRRDEFAASAALA 399
Query: 466 EQVIDQMPG----GDVMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAP 521
+ +++ G + PVG +G E RG +VH V ++ R KV P
Sbjct: 400 QHIVESHTGPIEYAATLHPVG---APSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDP 456
Query: 522 TYNNLPAVPEMLKGYHVADAPLIIASIDPCYS 553
++ N PA+P + V D PL S + Y+
Sbjct: 457 SWFNWPALPVAMADTIVPDFPLANKSFNQSYA 488
>pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD2
[similarity] - Aquifex aeolicus
>gi|2983737|gb|AAC07298.1| (AE000734) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 586
Score = 196 bits (492), Expect = 8e-49
Identities = 146/521 (28%), Positives = 245/521 (47%), Gaps = 76/521 (14%)
Query: 103 FNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPE 162
+N + N V +K++ ++ + P+V P A W ERE D+ G H + RR+ + E
Sbjct: 76 YNPEENERVIVKSWA--KDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMWE 133
Query: 163 DWPDGVYPLRKCMDYRYSPMAE-----------------------------------PKI 187
+ YPLRK + P E K
Sbjct: 134 GYEH--YPLRKDFPLQGIPEVELPSLTEVLHGRTDPPSHDFELVHTKLPTLEDLERTEKA 191
Query: 188 ELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTY 247
LKK E + GPLH G F ++GE++V D HRG+EK+ E L Y
Sbjct: 192 RLKKKAE--LVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAEN-LHY 248
Query: 248 NQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGI 307
Q + +R+ I + ++Y +ERL VE+P++ARYIRT+ EL+RI++HLLW+G
Sbjct: 249 FQFIPYTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGT 308
Query: 308 AAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVR 367
A +G T F++A+R RE +M ++E G R +GGV D+ + + + ++
Sbjct: 309 GALDLGALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIK 368
Query: 368 EIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATK 427
+ +K + ++ +++R + VG++ + + + GP AR SG D R +
Sbjct: 369 DFPNRLKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLR---KLQ 425
Query: 428 TATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM--------------- 472
AY+E+++ +PV + GDV R LVRM+E+ +S+ I+EQ + ++
Sbjct: 426 PYAAYDEVEFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHP 485
Query: 473 ----PGGDV------MVPVGRLPEYEEALGFTEAH------RGEVVHYVMTGEKNKVYRW 516
P DV MV R+ + E E + RGE+ ++ + K YR
Sbjct: 486 AVIPPKEDVFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRT 545
Query: 517 KVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
++R+ NL P++++G +ADA ++ S+DP T+R
Sbjct: 546 RIRSGALYNLSIFPKLIQGRTIADAIALLGSLDPVVGETDR 586
>emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D [Thermoplasma
acidophilum]
Length = 369
Score = 196 bits (492), Expect = 8e-49
Identities = 116/365 (31%), Positives = 198/365 (53%), Gaps = 10/365 (2%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V GP H + ++ + GE + +V+ Y HR EKIGE + + +++ +R+
Sbjct: 9 VNFGPQHPSMHGVLRLRVKLDGEIVKEVEPIIGYLHRNAEKIGELQFYCDNMIYF-DRMD 67
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ V Y A E+L D+E+P+RA++IR ++ EL RI +HL+W+G +G T F
Sbjct: 68 YVAAMNMEVGYLEAAEKLLDIEVPERAQWIRVMMAELNRIASHLVWLGAFGLDLGMLTPF 127
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ ++ RE ++ + ++G+R+Q +GGV +D+ D + I +RE +E+ +
Sbjct: 128 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKTFIREFPKELNKIES 187
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
+ + + FI R +G+GIL ++A ++ V GP RASG + D R Q Y+++++
Sbjct: 188 LFVKNDVFISRTKGIGILSKEMAIDYGVTGPMLRASGVEYDVRKAQ---PYLVYDKVNFD 244
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVG------RLPEYEEALG 492
+PV +GD LAR LVR++E+ +S+ IVEQ I ++P G RL E
Sbjct: 245 IPVSFKGDNLARFLVRVEEMRQSVKIVEQTIQKLPAGPYFNQKAKKPLMIRLRGQGEVYA 304
Query: 493 FTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCY 552
TE+ +GE Y++ + YR +VR+PT+ NL +P + K +AD I SID +
Sbjct: 305 RTESPKGEFGVYLIGDGSLRPYRVRVRSPTFKNLSVLPALAKDQMIADLISIGGSIDLVF 364
Query: 553 SCTER 557
+R
Sbjct: 365 GEVDR 369
>sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 2) >gi|5650747|emb|CAB51632.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 404
Score = 187 bits (471), Expect = 2e-46
Identities = 124/378 (32%), Positives = 192/378 (49%), Gaps = 32/378 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H L + GE + VD Y HRG EK+ E TY Q+ L +R+ +
Sbjct: 24 LGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAES-FTYTQIFPLTDRLDYL 82
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
C +++++A+A+E+L +E P RA+YIR ++ EL RI HLL G +G T ++
Sbjct: 83 CPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTALLY 142
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
A R RE +M L+E +TG R VGGVR D+ D +I ++ + ++
Sbjct: 143 AMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDGFLPKIREFCEIFPNRIRDYERLI 202
Query: 381 LNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVP 440
N F+ R +GVG++ A + + GP RASG D R D+ + Y+ LD+ V
Sbjct: 203 ENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYE---IYDRLDFDVI 259
Query: 441 VYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGG--DVMVPVGRLPEYEE--------- 489
+EGD +R L R+DE+ ESI ++EQ ++QMP G V +P P +E
Sbjct: 260 TREEGDCYSRWLCRVDEMRESIRLIEQCMEQMPEGAFQVDIPTIAFPVDKERVHCSMEAL 319
Query: 490 -------ALGF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
A GF EA +GE+ Y+++ K +R KVRAP++ NL A+ +
Sbjct: 320 IQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQALFGV 379
Query: 533 LKGYHVADAPLIIASIDP 550
++AD ++ S+DP
Sbjct: 380 TNARYLADMIAVLGSLDP 397
>gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG5 [Halobacterium
sp. NRC-1]
Length = 562
Score = 186 bits (468), Expect = 5e-46
Identities = 143/454 (31%), Positives = 222/454 (48%), Gaps = 31/454 (6%)
Query: 120 ENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPRRLVLPEDWPDGVYPLRKCMDYRY 179
+NP + A W ERE DL+G + +HP+ R++LP+ W +PL +DY
Sbjct: 108 DNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLERILLPDTWQG--HPLG--LDYNQ 163
Query: 180 S-PMAEPKIELKKPPEG---------TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYR 229
+ P E K P EG T + +GP H H + + GE++ DV+
Sbjct: 164 NKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHHPATHGVLHVETVLDGEQVADVNPD 223
Query: 230 GFYSHRGIEKIGEGRLTYNQVLFLAERI-CGICGYQHSVSYAMAIERLADVEIPDRARYI 288
Y HR E++ + +Q++ +R G G + +YA E LAD+++P+ A+ +
Sbjct: 224 IGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGILNEWAYARTAEDLADIDVPEYAQIL 283
Query: 289 RTLLLELERIHNHLLWVG-IAAHLVGYDTG-FMHAWRIREPVMWLMERLTGNRKQYGMNI 346
RT+ EL RI H+L +G + G T FM+A R RE V ++E LTG R
Sbjct: 284 RTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAMRDREVVQNILEDLTGQRMMLNYLR 343
Query: 347 VGGVRRDILDYRKE---EILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKE 403
+GGV DI + R E + + E+ E + + +++ + F R G+L Y+ AK+
Sbjct: 344 LGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDLITSNEIFQARTVNTGVLDYETAKD 403
Query: 404 FSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIW 463
+ V GP AR SG D R D Y ELDW V GD +R+LVRM+E+ +S
Sbjct: 404 YGVTGPVARGSGVDYDVRRDD---PYGYYPELDWDVVTEDGGDNYSRLLVRMEEVEQSAR 460
Query: 464 IVEQVIDQMPG-----GDVMVPVGRLPEYE---EALGFTEAHRGEVVHYVMTGEKNKVYR 515
I+EQ +D + G D+ V R + E E E +GE+ Y+ K R
Sbjct: 461 IIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTVEGAKGELGVYIRADGTEKPGR 520
Query: 516 WKVRAPTYNNLPAVPEMLKGYHVADAPLIIASID 549
+K+R+P ++NL A+ EM G ++ D + S+D
Sbjct: 521 FKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLD 554
>sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|7432634|pir||T11901 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Thermus aquaticus thermophilus
>gi|1279864|gb|AAA97941.1| (U52917) NADH dehydrogenase
I, subunit NQO4 [Thermus thermophilus]
Length = 409
Score = 183 bits (461), Expect = 3e-45
Identities = 122/404 (30%), Positives = 201/404 (49%), Gaps = 31/404 (7%)
Query: 181 PMAEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKI 240
P+ P E K+ T+ +GP H + + GEE+++V Y H G EK
Sbjct: 10 PLDAPPEEAKELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKT 69
Query: 241 GEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHN 300
E R TY Q + R+ + + H ++YA+A+E+L +P RA IR +L EL R+ +
Sbjct: 70 MEHR-TYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLAS 128
Query: 301 HLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKE 360
HL+++G +G T F +A+R RE ++ L E +TG R + +GGV+ D+ +
Sbjct: 129 HLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVP 188
Query: 361 EILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDA 420
E+ +++ + + + + + F +RA GVG++P +VA + + G + RASG D
Sbjct: 189 ELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDV 248
Query: 421 RLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP 480
R + Y + VP+ + GDV R+LVR+ E+ ES+ I++Q ++++ G V P
Sbjct: 249 R---KAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDP 305
Query: 481 ---------------------------VGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKV 513
G P E TE+ RGE+ +Y+++ +
Sbjct: 306 NPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMP 365
Query: 514 YRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
YR KVRAP++ NL ++P KG V D IIAS+DP +R
Sbjct: 366 YRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
>pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE1422 -
Aeropyrum pernix (strain K1) >gi|5105105|dbj|BAA80419.1|
(AP000061) 414aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 7 [Aeropyrum pernix]
Length = 414
Score = 182 bits (456), Expect = 1e-44
Identities = 135/395 (34%), Positives = 196/395 (49%), Gaps = 40/395 (10%)
Query: 187 IELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVK--GEEIVDVDYRGFYSHRGIEKIGEGR 244
I KK + + +GP H G H ++ ++ G+ IV+ D Y HR +EK+GE R
Sbjct: 20 IPSKKVAKDLYEIYIGPQHPG---SGHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIR 76
Query: 245 LTYNQV-LFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLL 303
+ LF I C ++ Y +A+E+L VE P RA+Y+RTLL E+ RI HL
Sbjct: 77 GWIKPIPLFERMAIHDACNI--TLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLY 134
Query: 304 WVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEIL 363
I +G+ T +M A RE + L E LTG R + I GG RRDI +
Sbjct: 135 GFAIFGVFLGHSTMYMWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPADFPDMAR 194
Query: 364 RVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLD 423
R VR +R+ + + ++ LN R EGVG++P K A E ++GP AR SG D RL
Sbjct: 195 RAVRYMRKRLDEYAKIFLNNPVIRSRLEGVGVIPKKAAAEMGIVGPNARGSGIDYDVRL- 253
Query: 424 QATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQ------------VIDQ 471
AY E+D++VPV++EGD LAR VR++E+ +S+ I+EQ ++D+
Sbjct: 254 --VHPYDAYPEIDFEVPVFEEGDALARTYVRVEEIKQSLRIIEQAVEWLEKHPREPIVDK 311
Query: 472 MPGG-------DVMVPVGR---LPEYE-------EALGFTEAHRGEVVHYVMTGEKNKVY 514
G V+ GR LP A+G E RGE V+YV + Y
Sbjct: 312 YLYGKYPPLHKKVLEAEGRAKLLPTVAAMKVPPGRAIGRAETGRGETVYYVESDGGVNPY 371
Query: 515 RWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASID 549
R ++ + N+ A +L G+ V D P I S+D
Sbjct: 372 RVRIVTASARNVIAFKYVLPGHRVMDIPAIYGSLD 406
>pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 45K chain nuoD -
Archaeoglobus fulgidus
Length = 410
Score = 180 bits (453), Expect = 3e-44
Identities = 133/411 (32%), Positives = 202/411 (48%), Gaps = 52/411 (12%)
Query: 176 DYRYSPMAEPKIELKK-----PPEGTST--------VPMGPLHMGIEEPAHFKLFVK--G 220
+Y EP EL+ PPE V +GP H G H +L V+ G
Sbjct: 3 EYALDIPVEPPRELRSLFIPIPPEYVEDTYRSDDFLVLVGPQHPG---SGHMRLIVRVRG 59
Query: 221 EEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVE 280
+ I +V Y HR +EK+ E RL Y Q + L ER + ++ Y AIE D+E
Sbjct: 60 DIIQEVIPDPGYVHRSMEKLAENRL-YIQNIPLVERPAIMDAPNFNLGYVRAIEEALDIE 118
Query: 281 IPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRK 340
+P+RA+++RT+L EL R+ HL I A +G+ TGFM+ + +RE + + RLTG R
Sbjct: 119 VPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICEALVRLTGARF 178
Query: 341 QYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKV 400
I GGVRRD D + I + + +K F + +N T I R + VG+L +
Sbjct: 179 TSSFIIPGGVRRDADDATLKWIYDMTLAMERRLKSFERIFINNPTVIARLQDVGVLSKEE 238
Query: 401 AKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFE 460
A ++ V+GP RASG + D R + AY++L W++PV GD AR LVR++E+ +
Sbjct: 239 AIKYGVVGPFLRASGVEYDVR---KVEPYEAYDDLTWEMPVSDAGDGYARFLVRVNEVGQ 295
Query: 461 SIWIVEQVIDQMPGG-----------------------DVMVPVGRLPEYEEALGFTEAH 497
S+ I+ Q I +MP G ++++P G E TE
Sbjct: 296 SLSIIRQCIKEMPEGRVISEQVAENEKDIRGSFFDSLSNIVLPSG------EYTTLTEGA 349
Query: 498 RGEVVHYVMT-GEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIAS 547
RG +++ +++ GE N YR ++ +P + L E +KG +AD I S
Sbjct: 350 RGTIIYSIISDGESNVPYRLRIVSPGWLYLRGFMESMKGERLADLQAIYGS 400
>pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257871|dbj|BAA30554.1| (AP000006) 394aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 394
Score = 180 bits (453), Expect = 3e-44
Identities = 123/362 (33%), Positives = 188/362 (50%), Gaps = 19/362 (5%)
Query: 202 GPLHMGIEEPAHFKLFVK--GEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICG 259
GP HM E +F + +K G +V + HRG EK+ E R Y + L RIC
Sbjct: 34 GPQHMATE---NFSIILKMDGNRVVKAIANPGFLHRGFEKLAEFRPWYTNIALLL-RICV 89
Query: 260 ICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFM 319
Y+MA++ + E+P+RA++IRTL+LEL R+ +L W+ + +G T
Sbjct: 90 PESDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLELARVSAYLFWIMGLSFKLGVYTAGQ 149
Query: 320 HAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDIL-DYRKEEILRVVREIREEVKRFLE 378
A RE +M + E LTG R + I GGVRRDI D ++ V IR ++ F
Sbjct: 150 WAAAYRERIMRIFEELTGARVYHIFTIPGGVRRDIPGDKWLRQVRDTVEYIRSKLPDFDN 209
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ +R EG+G++ K A V GP RA+G D R D Y+E++++
Sbjct: 210 ILFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDD---PYLFYSEVEFE 266
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQ-MPGGDVMVPVGR---LPEYE----EA 490
VP KEGD LAR LVR EL + ++I+EQ+++ P G V R LP ++ +A
Sbjct: 267 VPTLKEGDALARALVRRYELEQDLYIIEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDA 326
Query: 491 LGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTY-NNLPAVPEMLKGYHVADAPLIIASID 549
E+ +G+ YV++ NK YR VR P+ + + + ++L G +AD P+I+ S+D
Sbjct: 327 FAHVESTKGDFGAYVVSDGGNKPYRVHVRGPSIAHGIRVLEKLLVGARIADVPIILMSLD 386
Query: 550 PC 551
C
Sbjct: 387 NC 388
>gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD) [Archaeoglobus
fulgidus] >gi|2648715|gb|AAB89420.1| (AE000976)
F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)
[Archaeoglobus fulgidus]
Length = 413
Score = 180 bits (453), Expect = 3e-44
Identities = 133/411 (32%), Positives = 202/411 (48%), Gaps = 52/411 (12%)
Query: 176 DYRYSPMAEPKIELKK-----PPEGTST--------VPMGPLHMGIEEPAHFKLFVK--G 220
+Y EP EL+ PPE V +GP H G H +L V+ G
Sbjct: 6 EYALDIPVEPPRELRSLFIPIPPEYVEDTYRSDDFLVLVGPQHPG---SGHMRLIVRVRG 62
Query: 221 EEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVE 280
+ I +V Y HR +EK+ E RL Y Q + L ER + ++ Y AIE D+E
Sbjct: 63 DIIQEVIPDPGYVHRSMEKLAENRL-YIQNIPLVERPAIMDAPNFNLGYVRAIEEALDIE 121
Query: 281 IPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRK 340
+P+RA+++RT+L EL R+ HL I A +G+ TGFM+ + +RE + + RLTG R
Sbjct: 122 VPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICEALVRLTGARF 181
Query: 341 QYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKV 400
I GGVRRD D + I + + +K F + +N T I R + VG+L +
Sbjct: 182 TSSFIIPGGVRRDADDATLKWIYDMTLAMERRLKSFERIFINNPTVIARLQDVGVLSKEE 241
Query: 401 AKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFE 460
A ++ V+GP RASG + D R + AY++L W++PV GD AR LVR++E+ +
Sbjct: 242 AIKYGVVGPFLRASGVEYDVR---KVEPYEAYDDLTWEMPVSDAGDGYARFLVRVNEVGQ 298
Query: 461 SIWIVEQVIDQMPGG-----------------------DVMVPVGRLPEYEEALGFTEAH 497
S+ I+ Q I +MP G ++++P G E TE
Sbjct: 299 SLSIIRQCIKEMPEGRVISEQVAENEKDIRGSFFDSLSNIVLPSG------EYTTLTEGA 352
Query: 498 RGEVVHYVMT-GEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIAS 547
RG +++ +++ GE N YR ++ +P + L E +KG +AD I S
Sbjct: 353 RGTIIYSIISDGESNVPYRLRIVSPGWLYLRGFMESMKGERLADLQAIYGS 403
>pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chain C-D -
Escherichia coli >gi|1788622|gb|AAC75346.1| (AE000317)
NADH dehydrogenase I chain C, D [Escherichia coli K12]
Length = 600
Score = 177 bits (444), Expect = 3e-43
Identities = 149/511 (29%), Positives = 235/511 (45%), Gaps = 57/511 (11%)
Query: 97 SVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPR 156
SV ++DRN + LK L + P+ P A W ERE DL G HP+ R
Sbjct: 97 SVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLR 156
Query: 157 RLVLPEDWPDGVYPLRKCMDYR---YSPM----AEPKIELK----KPPE-----GTST-- 198
R+++P+ W +PLRK R +SP A+ +E++ KP E GT
Sbjct: 157 RIMMPQTWKG--HPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENED 214
Query: 199 ---VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
+ +GP H L + GEEIVD Y HRG EK+GE R +++ + +
Sbjct: 215 FMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTD 273
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
RI + G + + Y +A+E+LA + +PDR IR +L EL RI++HLL++ VG
Sbjct: 274 RIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAM 333
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKR 375
T A+ R+ + L+E +TG R +GGV D L + +LR + +
Sbjct: 334 TPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHD-LPRGWDRLLREFLDWMPKRLA 392
Query: 376 FLEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNE 434
E NT +K R++GV K A E+ G RA+G D R + + Y
Sbjct: 393 SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVR---KARPYSGYEN 449
Query: 435 LDWKVPV-YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD----------------- 476
D+++PV D RV+++++EL +S+ I+EQ ++ MP G
Sbjct: 450 FDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTL 509
Query: 477 ----------VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNL 526
+ V G + E+ EA +G +Y+ + YR +VR P++ +L
Sbjct: 510 QHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHL 569
Query: 527 PAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
+P ++G V+D + + SID S +R
Sbjct: 570 QQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays]
>gi|128833|sp|P25709|NUCC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST
>gi|100954|pir||S13600 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K chain - maize chloroplast
>gi|14301|emb|CAA39868.1| (X56521) ndhH subunit of NADH
dehydrogenase [Zea mays] >gi|902290|emb|CAA60354.1|
(X86563) NADH dehydrogenase 49KDa protein [Zea mays]
Length = 393
Score = 175 bits (440), Expect = 1e-42
Identities = 118/377 (31%), Positives = 188/377 (49%), Gaps = 30/377 (7%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE+++D + Y HRG+EKI E R + ++
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLPYVTRWDY 72
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ +++ A E L +++IP RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 73 LATMFTEAIT-VNAPEFLENIQIPKRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE + L E +TG R + +GGV D+ ++ L + V + E
Sbjct: 132 FYIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQGVVEYQE 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R EGVG + + A + + GP RASG + D R +YN+ DWK
Sbjct: 192 LITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLR---KIDPYESYNQFDWK 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGRLPEY----- 487
V KEGD LAR LVR+ E+ ESI I++Q ++++PGG + PE+
Sbjct: 249 VQWQKEGDSLARYLVRVGEMRESIKIIQQAVEKIPGGPYENLEARRFKKAKNPEWNDFEY 308
Query: 488 ---------------EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
+E EA +GE+ Y++ + +RWK+R P + NL +P++
Sbjct: 309 RFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQL 368
Query: 533 LKGYHVADAPLIIASID 549
+K +AD I+ SID
Sbjct: 369 VKKMKLADIMTILGSID 385
>pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyrococcus abyssi
(strain Orsay) >gi|5458139|emb|CAB49628.1| (AJ248285)
NADH dehydrognease I, subunit D (nuoD) [Pyrococcus
abyssi]
Length = 394
Score = 175 bits (438), Expect = 2e-42
Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 19/377 (5%)
Query: 187 IELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVK--GEEIVDVDYRGFYSHRGIEKIGEGR 244
+EL + T + GP HM E +F + +K G +V + HRG EK+ E R
Sbjct: 19 MELYPIEKDTYELFFGPQHMATE---NFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYR 75
Query: 245 LTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLW 304
Y + L RIC Y++A++ + E+P+RA++IRT +LE+ R+ +L W
Sbjct: 76 PWYTNIALLL-RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFW 134
Query: 305 VGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDIL-DYRKEEIL 363
+ + +G T A RE +M L E LTG R + I GGVRRDI D ++
Sbjct: 135 IMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLK 194
Query: 364 RVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLD 423
V I+ ++ F +V +R EG+G++ K A V GP RA+G D R D
Sbjct: 195 DTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD 254
Query: 424 QATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQ-MPGGDVMVPVG 482
Y ELD++VP +EGD LAR LVR EL + ++I+EQ+++ P G V
Sbjct: 255 D---PYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDP 311
Query: 483 R---LPEYE----EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTY-NNLPAVPEMLK 534
R LP ++ +A E+ +G+ YV++ +K YR VR P+ + + + ++L
Sbjct: 312 RLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
Query: 535 GYHVADAPLIIASIDPC 551
G +AD P+I+ S+D C
Sbjct: 372 GARIADVPVILMSLDNC 388
>emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 kD subunit
[Oenothera elata subsp. hookeri]
Length = 393
Score = 174 bits (437), Expect = 2e-42
Identities = 118/378 (31%), Positives = 185/378 (48%), Gaps = 32/378 (8%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + L + GE+++D + Y HRG+EKI E R + ++
Sbjct: 13 VNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDY 72
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ +++ E+L ++++P RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 73 LATMFTEAITIN-GPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE V L E TG R + +GGV D+ ++ L V + +
Sbjct: 132 FYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQK 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R EGVGI+ + A + + GP RASG + D R Y ELDW+
Sbjct: 192 LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLR---KVDRYECYGELDWE 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV--------------------- 477
+ KEGD LAR LVRM E+ ESI I++Q ++ +PGG
Sbjct: 249 IRWQKEGDSLARYLVRMSEMTESIKIIQQALEGIPGGPYENLEIRCFDREKDPEWDGFEY 308
Query: 478 ------MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
P LP+ +E EA +GE+ +++ + +RWK+R P + NL +P+
Sbjct: 309 RFISKKPSPTFELPK-QELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPQ 367
Query: 532 MLKGYHVADAPLIIASID 549
++K +AD I+ SID
Sbjct: 368 LVKRMKLADIMTILGSID 385
>gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa]
>gi|128835|sp|P12132|NUCC_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|66200|pir||DERZ49 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K protein - rice chloroplast
>gi|12056|emb|CAA33911.1| (X15901) NADH dehydrogenase
49kDa protein [Oryza sativa] >gi|226677|prf||1603356DE
NADH dehydrogenase 49kD protein [Oryza sativa]
Length = 393
Score = 174 bits (436), Expect = 3e-42
Identities = 123/377 (32%), Positives = 185/377 (48%), Gaps = 30/377 (7%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE+++D + Y HRG+EKI E R T Q L R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR-TIIQYLPYVTRWD 71
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ A E L +++IP RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 72 YLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE + L E TG R + +GGV D+ ++ L V + +
Sbjct: 132 FYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQ 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R EGVG + + A + + GP RASG + D R +YN+ DWK
Sbjct: 192 LITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLR---KVDLYESYNQFDWK 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV-MVPVGRL------------- 484
V KEGD LAR LVR+ E+ ESI I++Q ++++PGG + V R
Sbjct: 249 VQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRRFKKAKNSEWNDFEY 308
Query: 485 --------PEYE----EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
P +E E EA +GE+ Y++ + +RWK+R P + NL +P++
Sbjct: 309 RFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQL 368
Query: 533 LKGYHVADAPLIIASID 549
+K +AD I+ SID
Sbjct: 369 VKKMKLADIMTILGSID 385
>sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|4150868|emb|CAA09811.1| (AJ011848) ndhH protein
[Hordeum vulgare]
Length = 393
Score = 174 bits (436), Expect = 3e-42
Identities = 124/377 (32%), Positives = 185/377 (48%), Gaps = 30/377 (7%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE+++D + Y HRG+EKI E R T Q L R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENR-TIIQYLPYVTRWD 71
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ A E L +++IP RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 72 YLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE + L E TG R + +GGV D+ ++ L V + +
Sbjct: 132 FYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVVEYQQ 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R EGVG + + A + + GP RASG + D R +YN+ DWK
Sbjct: 192 LITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLR---KVDPYESYNQFDWK 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV-MVPVGRL------------- 484
V KEGD LAR LVR+ E+ ESI I++Q I+++PGG + V R
Sbjct: 249 VQWQKEGDSLARYLVRVGEMSESIKIIQQAIEKIPGGPYENLEVRRFKKEKNSEWNDFEY 308
Query: 485 --------PEYE----EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
P +E E EA +GE+ Y++ + +RWK+R P + NL +P++
Sbjct: 309 KFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPGFINLQILPQL 368
Query: 533 LKGYHVADAPLIIASID 549
+K +AD I+ SID
Sbjct: 369 VKKMKLADIMTILGSID 385
>sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT
>gi|66201|pir||QXYBNH NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhH - Synechocystis sp. (strain PCC
6803) >gi|48042|emb|CAA43057.1| (X60650) NDH-H
[Synechocystis PCC6803] >gi|1653022|dbj|BAA17939.1|
(D90910) NADH dehydrogenase subunit 7 [Synechocystis
sp.]
Length = 394
Score = 173 bits (435), Expect = 4e-42
Identities = 127/400 (31%), Positives = 189/400 (46%), Gaps = 36/400 (9%)
Query: 186 KIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRL 245
KIE + P + MGP H + + + GE++VD + Y HRG+EKI E R
Sbjct: 3 KIETRTEP---MVLNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAESRT 59
Query: 246 TYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWV 305
V +++ R G + A E+LAD+E+P RA+YIR ++LEL RI NHLLW+
Sbjct: 60 NIMYVPYVS-RWDYAAGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWL 118
Query: 306 GIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRK-QYGMNIVGGVRRDILDYRKEEILR 364
G VG T F + +R RE + L E +G R VGGV D+ ++
Sbjct: 119 GPFMADVGAQTPFFYIFREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYGWNDKCED 178
Query: 365 VVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQ 424
+V + +++ N F +R EGVG + + A + + GP R SG K D R
Sbjct: 179 FCDYFLPKVDEYEKLITNNPIFRRRVEGVGTVTREEAINWGLSGPMLRGSGVKWDLR--- 235
Query: 425 ATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------- 477
Y+ELDW+V GD AR LVR+ E+ ES+ I+ Q + MPGG
Sbjct: 236 KVDHYECYDELDWEVQYETAGDCFARYLVRIREMRESVKIIRQALKAMPGGPYENLEAKR 295
Query: 478 --------------------MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWK 517
+ P ++P E + E+ +GE+ ++ + +RWK
Sbjct: 296 LQEGKKSEWNDFQYQYIAKKVAPTFKIPAGEHYVRL-ESGKGELGIFIQGNDDVFPWRWK 354
Query: 518 VRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
+R+ +NNL +P +LKG VAD I+ SID +R
Sbjct: 355 IRSADFNNLQILPHILKGVKVADIMAILGSIDIIMGSVDR 394
>gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|NUCC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT,
CHLOROPLAST (ORF 392) >gi|81368|pir||A05025 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 392 -
liverwort (Marchantia polymorpha) chloroplast
>gi|11729|emb|CAA28140.1| (X04465) ORF392 [Marchantia
polymorpha]
Length = 392
Score = 173 bits (435), Expect = 4e-42
Identities = 119/378 (31%), Positives = 186/378 (48%), Gaps = 32/378 (8%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE+++D + Y HRG+EKI E R T Q L R
Sbjct: 12 VSMGPHHPSMHGVLRLIVTLDGEDVLDCEPVLGYLHRGMEKIAENR-TIVQYLPYVTRWD 70
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ A E+L ++++P RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 71 YLATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPF 130
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE + L E TG R + +GGV D+ ++ L ++ +
Sbjct: 131 FYIFREREMIYDLFESATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYFLPKINEYER 190
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ N F+KR EG+G + + A + + GP RASG + D R Y+ELDWK
Sbjct: 191 LITNNPIFLKRVEGIGTVTREEAINWGLSGPMLRASGVQWDLR---KVDHYECYDELDWK 247
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV--------------------- 477
+ KEGD LAR LVR+ E+ ES+ I++Q + +PGG
Sbjct: 248 IQWQKEGDSLARYLVRIGEMKESVKIIQQALKAIPGGPFENLEARRLNQGKNSEWNLFEY 307
Query: 478 ------MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
P +LP+ E + EA +GE+ +++ + +R K+R+P + NL +P+
Sbjct: 308 QFISKKPSPTFKLPKQEHYVR-VEAPKGELGIFLIGDDSVFPWRLKIRSPGFINLQILPQ 366
Query: 532 MLKGYHVADAPLIIASID 549
++KG +AD I+ SID
Sbjct: 367 LVKGMKLADIMTILGSID 384
>gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thaliana]
>gi|6685679|sp|P56753|NUCC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|5881752|dbj|BAA84443.1| (AP000423) NADH
dehydrogenase 49KDa protein [Arabidopsis thaliana]
Length = 393
Score = 172 bits (431), Expect = 1e-41
Identities = 119/389 (30%), Positives = 194/389 (49%), Gaps = 32/389 (8%)
Query: 189 LKKPPEGTST--VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLT 246
+K+P G V MGP H + + + GE++VD + Y HRG+EKI E R
Sbjct: 1 MKRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAI 60
Query: 247 YNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVG 306
+ ++ + +++ E+L ++++P RA YIR ++LEL RI +HLLW+G
Sbjct: 61 IQYLPYVTRWDYLATMFTEAIT-VNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLG 119
Query: 307 IAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVV 366
+G T F + +R RE V L E TG R + +GG+ D+ ++ L
Sbjct: 120 PFMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFC 179
Query: 367 REIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQAT 426
EV + +++ F++R EGVGI+ + A + + GP RASG D R
Sbjct: 180 DYFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLR---KI 236
Query: 427 KTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGG--DVMVPVG-- 482
+Y+E +W++ K+GD LAR LVR+ E+ ESI I++Q ++ +PGG + + G
Sbjct: 237 DRYESYDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFD 296
Query: 483 --RLPEY--------------------EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRA 520
R PE+ +E EA +GE+ +++ + +RWK+R
Sbjct: 297 RKRNPEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRP 356
Query: 521 PTYNNLPAVPEMLKGYHVADAPLIIASID 549
P + NL +PE++K +AD I+ SID
Sbjct: 357 PGFINLQILPELVKRMKLADIMTILGSID 385
>gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma viride]
>gi|7259587|gb|AAF43888.1|AF166114_100 (AF166114) 49 kDa
subunit of NADH-plastoquinone [Mesostigma viride]
Length = 391
Score = 169 bits (425), Expect = 6e-41
Identities = 117/378 (30%), Positives = 179/378 (46%), Gaps = 32/378 (8%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ MGP H + + + GE ++D + Y HR +EKI E R T Q L R
Sbjct: 11 ISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRAMEKIAENR-TIVQYLPYVTRWD 69
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ A E+LA++E+P RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 70 YLATMFTEAITVNAPEKLANIEVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPF 129
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ R RE + L E TG R + +GGV D+ ++ L +V +
Sbjct: 130 FYILREREMIYDLFEAATGMRMMHNYFRIGGVASDLPYGWVDKCLDFSDYFLPKVDEYER 189
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ N F+KR VG + + A + + GP RASG + D R Y ELDW
Sbjct: 190 LITNNPIFLKRVRDVGFISREEAINWGLSGPMLRASGVQWDLR---KVDNYECYGELDWN 246
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV--------------------- 477
V +GD LAR LVR+ E+ ES I++Q + +PGG
Sbjct: 247 VQWQSDGDCLARYLVRLGEMRESTKIIQQALKAIPGGPYENLEARRLSKGRKSEWNNFEY 306
Query: 478 ------MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
P ++P+ E + EA +GE+ ++M + +RWK+R+P + N+ +PE
Sbjct: 307 QFVGKKPSPTFKIPKQEHYVR-VEAPKGELGVFLMGDDNVFPWRWKIRSPGFINVQILPE 365
Query: 532 MLKGYHVADAPLIIASID 549
+++G +AD I+ SID
Sbjct: 366 LVRGMKLADIMTILGSID 383
>sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C/D) >gi|10038839|dbj|BAB12874.1| (AP001118) NADH
dehydrogenase I chain C / D [Buchnera sp. APS]
Length = 600
Score = 168 bits (422), Expect = 1e-40
Identities = 132/512 (25%), Positives = 234/512 (44%), Gaps = 59/512 (11%)
Query: 97 SVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPR 156
SV +++RN + +K L + P+ P A W ERE D+ G NHP+
Sbjct: 97 SVFYHLISIERNSDIMIKVPLLENDLILPTFTGLFPNANWYERETWDMFGIIFNNHPNLT 156
Query: 157 RLVLPEDWPDGVYPLRKCMDYR---YSP--MAEPKIELKKPPEGTSTVP----------- 200
R+++P W +PLRK R Y P + E K +L+ EG P
Sbjct: 157 RIIMPSTWKG--HPLRKNYSARATEYEPFFLNEQKEDLEM--EGLKFKPELWGMKRKNDN 212
Query: 201 -------MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFL 253
+GP H L + GE IVD Y HRG EK+ E R +++ +
Sbjct: 213 VEFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAE-RQSWHSYIPY 271
Query: 254 AERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVG 313
+RI + G + + Y +A+E+LA++ +P++A IR ++ EL RI++HLL++ VG
Sbjct: 272 TDRIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVG 331
Query: 314 YDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEV 373
T A+ R+ + L+E +TG R +GGV D+ + + + + +
Sbjct: 332 CMTPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRL 391
Query: 374 KRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYN 433
K ++ L + I R++G+ K A ++ V G RA+G D R + + Y
Sbjct: 392 KYYINTALKNSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVR---KWRPYSGYQ 448
Query: 434 ELDWKVPVYKE-GDVLARVLVRMDELFESIWIVEQVIDQMPGGD---------------- 476
++VPV D +RV+++++E+++S++I++Q + MP G
Sbjct: 449 NYTFEVPVGSGISDCYSRVMIKVEEIYQSLFILKQCLCNMPSGPFKSEDSLTTPPSKECV 508
Query: 477 -----------VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNN 525
+ V G + E+ EA +G +Y+++ YR ++R P++ +
Sbjct: 509 LQNIETMITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMSYRTRIRTPSFPH 568
Query: 526 LPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
L +P +++G ++D + + SID S +R
Sbjct: 569 LQQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 600
>sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7473200|pir||A75388 NADH dehydrogenase I, D
subunit - Deinococcus radiodurans (strain R1)
>gi|6459264|gb|AAF11069.1|AE001994_5 (AE001994) NADH
dehydrogenase I, D subunit [Deinococcus radiodurans]
Length = 401
Score = 168 bits (422), Expect = 1e-40
Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 31/384 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H + + GE + V+ Y H G EK E R TY Q + A R +
Sbjct: 22 VGPQHPSTHGVLRLVVDMDGEYVTRVEPHMGYLHTGFEKTMEHR-TYQQNVTYAPRTDYL 80
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
+ H ++Y +++E+L E+P+RA +R +L EL RIH+HL++VG +G T F +
Sbjct: 81 HSFSHELAYVLSVEKLLGAEVPERANVVRVILHELGRIHSHLVFVGTGLLDLGALTPFFY 140
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
A+R +E L E + G R G VGG+ RD+ + + + ++ V+ + +
Sbjct: 141 AFREKEACQDLFEAVCGYRMNQGYFRVGGLARDLPEGWTARVEAFLNQMERGVEEYTTLF 200
Query: 381 LNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVP 440
F+ RA+GVG++P A + + GP RASG +D R D + + D+ V
Sbjct: 201 AANPIFLDRAKGVGVIPADAALDLGLTGPNLRASGVPLDNRKDH---PYCGFEDYDFNVI 257
Query: 441 VYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV----------------------- 477
+GD LAR +R+ E ESI I+ Q + ++ G +
Sbjct: 258 SSPDGDSLARFNMRLLEFSESIKIIRQGLQKLRPGPIKDPNRKISLPPRHELETSMEAVI 317
Query: 478 ----MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEML 533
+V G P EA E+ RGEV +YV++ + YR K+RAP++ NL A+
Sbjct: 318 HHFKLVTEGFHPPLGEAYVPIESARGEVGYYVISDGGSMPYRVKIRAPSFVNLQALEYAC 377
Query: 534 KGYHVADAPLIIASIDPCYSCTER 557
G AD I+A+IDP +R
Sbjct: 378 VGVQFADLITILATIDPVLGDVDR 401
>gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum]
>gi|128838|sp|P12133|NUCC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|82215|pir||A05216 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 393 - common tobacco chloroplast
>gi|1223674|emb|CAA77398.1| (Z00044) NADH dehydrogenase
49kD subunit [Nicotiana tabacum]
>gi|225262|prf||1211235CX ORF 393 [Nicotiana tabacum]
Length = 393
Score = 167 bits (418), Expect = 4e-40
Identities = 119/377 (31%), Positives = 185/377 (48%), Gaps = 30/377 (7%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE++VD + Y HRG+EKI E R T Q L R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENR-TIIQYLPYVTRWD 71
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ E+L ++++P RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 72 YLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ +R RE + L E TG R + +GGV D+ ++ L V + +
Sbjct: 132 FYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQK 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R EGVGI+ A + + GP RASG + D R +Y+E DW+
Sbjct: 192 LITRNPIFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLR---KVDHYESYDEFDWQ 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV-MVPVGRL-----PEY----- 487
V +EGD LAR LVR+ E+ ESI I++Q ++ +PGG + + R PE+
Sbjct: 249 VQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEIRRFDRLKDPEWNDFEY 308
Query: 488 ---------------EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
+E EA +GE+ +++ + +RWK+R P + NL +P++
Sbjct: 309 RFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQL 368
Query: 533 LKGYHVADAPLIIASID 549
+K +AD I+ SID
Sbjct: 369 VKRMKLADIMTILGSID 385
>pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolor
>gi|4585838|emb|CAB40932.1| (AL049630) putative NADH
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 383
Score = 166 bits (416), Expect = 7e-40
Identities = 122/382 (31%), Positives = 188/382 (48%), Gaps = 22/382 (5%)
Query: 180 SPMAEPKIELKKPPEGTSTV-PMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIE 238
+P E + + E T V +GP H KL + GE I + Y HRG E
Sbjct: 2 TPTTETTVGIGGAAESTDMVLNIGPQHPSTHGVLRLKLVLDGERITSAEPVIGYMHRGAE 61
Query: 239 KIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERI 298
K+ E R Y Q++ LA R + + + + +A+ER+ +E+P RA + RTLL EL R+
Sbjct: 62 KLFEAR-DYRQIIMLANRHDWLSAFSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRV 120
Query: 299 HNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYR 358
NHL+++G +G T +A+R RE + +ME ++G R Y N VGG++ D+
Sbjct: 121 LNHLMFLGSYPLELGGITPVFYAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGW 180
Query: 359 KEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKI 418
V +R + F ++VL F R GVG L + + V GP ARASG
Sbjct: 181 TTRARGAVAAVRSRMDVFDDLVLGNEIFRGRTRGVGALSAEAVHAYGVSGPVARASGVDF 240
Query: 419 DARLDQATKTATAYNELD--WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM---- 472
D R D+ AY EL KV +GD LAR + + ++ + + +D++
Sbjct: 241 DLRRDE---PYLAYGELQDTLKVVTRTDGDCLARFECLLAQTHNALDLADACLDRLAELA 297
Query: 473 PGGDVMVPVG-RLPEYEEA-----LGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNL 526
PG PV RLP+ +A +TE G +Y+++ + YR K+R+ +YNN+
Sbjct: 298 PG-----PVNQRLPKVLKAPEGHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSASYNNI 352
Query: 527 PAVPEMLKGYHVADAPLIIASI 548
A+ E+L G VAD I+ S+
Sbjct: 353 QALAELLPGTLVADMVAILGSL 374
>gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea]
>gi|7636168|emb|CAB88790.1| (AJ400848) NADH
dehydrogenase 49kD subunit [Spinacia oleracea]
Length = 393
Score = 162 bits (407), Expect = 7e-39
Identities = 115/377 (30%), Positives = 181/377 (47%), Gaps = 30/377 (7%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H + + + GE+++D + Y HRG+EKI E R T Q L R
Sbjct: 13 VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPIVGYLHRGMEKIAENR-TIIQYLPYVTRWD 71
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ E+L ++++P RA YIR ++LEL RI +HLLW+G +G T F
Sbjct: 72 YLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPF 131
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ R RE + L E TG R + +GGV D+ ++ L + + +
Sbjct: 132 FYILRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLIGLTEYQK 191
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F++R E VGI+ + A + + GP RASG + D R Y+E DW+
Sbjct: 192 LITRNPIFLERVENVGIIGGEEAINWGLSGPMLRASGIQWDLR---KVDHYECYDEFDWE 248
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD-----------VMVPVGRLPEY 487
V KEGD LAR L+R+ E+ ES+ I++Q ++ +PGG + P EY
Sbjct: 249 VQWQKEGDSLARYLIRIGEMAESVKIIQQALEGIPGGPYENLEIRRFNRIKYPEWNDFEY 308
Query: 488 ---------------EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEM 532
+E EA +GE+ +++ + +RWK+R P + NL +P++
Sbjct: 309 RFISKKPSPAFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFINLQILPQL 368
Query: 533 LKGYHVADAPLIIASID 549
+K +AD I+ SID
Sbjct: 369 VKKMKLADIMTILGSID 385
>pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948707|gb|AAG06027.1|AE004692_6 (AE004692) NADH
dehydrogenase I chain C,D [Pseudomonas aeruginosa]
Length = 593
Score = 161 bits (402), Expect = 3e-38
Identities = 130/501 (25%), Positives = 217/501 (42%), Gaps = 54/501 (10%)
Query: 97 SVQVEPFNMDRNYWVFLKAYLDPENPEFPSVAAELPAALWIEREVQDLLGFKAINHPDPR 156
SV +++RN V +K L + P+ P A W EREV D+ G HP
Sbjct: 91 SVFYHLMSLERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLT 150
Query: 157 RLVLPEDWPDGVYPLRKCMDYR---YSP--MAEPKIELK------KPP----------EG 195
R+++P W +PLRK R + P ++ K +L+ KP E
Sbjct: 151 RMLMPPTWQG--HPLRKDYPARATEFDPYSLSAAKQDLEQEALRFKPEDWGMKRHGENED 208
Query: 196 TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
+ +GP H L + GEEI+D Y HRG EK+ E R +++ + +
Sbjct: 209 YMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAE-RQSWHSFIPYTD 267
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
RI + G +++ Y +++E+LA +++P R IR ++ E RI NHLL++G VG
Sbjct: 268 RIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAM 327
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKR 375
T + R+ ++E +TG R +GGV D+ + + + + + +
Sbjct: 328 TPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDE 387
Query: 376 FLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNEL 435
+ L + R GV K A E+ G RA+G D R + + Y
Sbjct: 388 YETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLR---KARPYSGYENF 444
Query: 436 DWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD------------------- 476
+++VP+ GD R +V+M E+ +S+ I+EQ + MP G
Sbjct: 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQH 504
Query: 477 --------VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPA 528
+ V G + EA EA +G +Y+ + YR ++R P++ +L
Sbjct: 505 IETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQ 564
Query: 529 VPEMLKGYHVADAPLIIASID 549
+P ++ G +AD + SID
Sbjct: 565 IPSVINGSMIADLIAYLGSID 585
>sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|101862|pir||S13801 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 49K chain -
Neurospora crassa >gi|3048|emb|CAA38368.1| (X54508) NADH
dehydrogenase 49 kD subunit [Neurospora crassa]
Length = 478
Score = 159 bits (399), Expect = 6e-38
Identities = 121/387 (31%), Positives = 187/387 (48%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
TV GP H L +KGEEIV D HRG EK+ E R TY Q L +R+
Sbjct: 96 TVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYR-TYLQALPYFDRL 154
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + +A+A+E+L +VEIP+RA++IRT+ E+ RI NHL+ V A VG T
Sbjct: 155 DYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVGALTP 214
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ + RE +M ER++G R GGV +DI ++I + + +
Sbjct: 215 FLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYMWATQFGDRIDETE 274
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + +I R G+G++ A S G R SG D R Q AY+++++
Sbjct: 275 EMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQ---PYDAYDQVEF 331
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--------PVGRLPEYEE 489
VPV GD R L RM+E +S+ I+ Q +++MP G V V P + E E
Sbjct: 332 DVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMPAGPVRVEDYKISPPPRSAMKENME 391
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
AL G+ E +GE+ YV++ + YR +RAP + +L
Sbjct: 392 ALIHHFLLYTKGYAVPPGDTYSAIEGPKGEMGVYVVSDGSERPYRVHIRAPGFAHLGGFD 451
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
+ +G+ +ADA +I ++D + +R
Sbjct: 452 HLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase [Nephroselmis
olivacea] >gi|5880798|gb|AAD54891.1|AF137379_114
(AF137379) 49 kDa subunit of NADH-plastoquinone
oxidoreductase [Nephroselmis olivacea]
Length = 391
Score = 159 bits (398), Expect = 8e-38
Identities = 119/390 (30%), Positives = 178/390 (45%), Gaps = 35/390 (8%)
Query: 187 IELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLT 246
IE K P V MGP H + + + GE ++D + Y HRG+EKI E R T
Sbjct: 2 IEAKTDP---MIVSMGPHHPSMHGVLRLIVTLDGENVLDCEPVVGYLHRGMEKIAENR-T 57
Query: 247 YNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVG 306
Q L R + A ERLA++E+P RA Y+R ++LEL RI +HLLW+G
Sbjct: 58 IVQYLPYVTRWDYLATMFTEAITVNAPERLANIEVPRRASYLRVIMLELSRIASHLLWLG 117
Query: 307 IAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVV 366
+G T F + R RE + L E TG R + VGGV D+ ++ L
Sbjct: 118 PFMADLGAQTPFFYILREREMIYDLFEAATGMRMMHNYFRVGGVAADVPYGWIDKCLDFC 177
Query: 367 REIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQAT 426
+V + ++ F+KR +GVG + + A + + GP RASG D R
Sbjct: 178 EYFLPKVDEYEALITRNPIFLKRVKGVGTISPQQAINWGLSGPMLRASGVSWDLR---KV 234
Query: 427 KTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV--------- 477
Y + W V + GD LAR LVR+ E+ S IV+Q + +PGG
Sbjct: 235 DRYECYEDFHWSVESEETGDCLARYLVRIREMRTSTKIVQQALKSIPGGPTENLEARQLS 294
Query: 478 ------------------MVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVR 519
P ++P E + EA +GE+ +++ + +RWK+R
Sbjct: 295 QGRTSPWNEFDYQFLGKKASPTFKMPRQEHYVR-VEAPKGELGVFLIGDDHVFPWRWKIR 353
Query: 520 APTYNNLPAVPEMLKGYHVADAPLIIASID 549
P + N+ +P +++G +AD I+ SID
Sbjct: 354 PPGFINVQILPNLVQGMKLADIMTILGSID 383
>pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Helicobacter pylori (strain 26695)
>gi|2314430|gb|AAD08309.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO4 subunit (NQO4){Triticum aestivum}
[Helicobacter pylori 26695]
Length = 409
Score = 159 bits (398), Expect = 8e-38
Identities = 114/386 (29%), Positives = 196/386 (50%), Gaps = 35/386 (9%)
Query: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
GP H L ++GE+I+ Y HRG EK+GE +TYN+ + +R+
Sbjct: 29 GPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGEN-MTYNEYMPTTDRLDYTS 87
Query: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
++ +YA A+E L ++EIP RA+ IRT+LLEL R+ +H+ ++ + A VG + F++A
Sbjct: 88 STSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFLYA 147
Query: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
++ RE + LME G R + +GGV D+ E + + + E+R E K+ ++ +L
Sbjct: 148 FKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMR-ECKKLIQGLL 206
Query: 382 NTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVP 440
+ N + R E VG++ K+A+ + + G R +G D R ++ + Y ELD+ VP
Sbjct: 207 DKNRIWRMRLENVGVVTQKMAQSWGMSGIMLRGTGIAYDIRKEEPYE---LYKELDFDVP 263
Query: 441 VYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD------------------------ 476
V GD R + M E+ ES+ I+EQ+I D
Sbjct: 264 VGNYGDSYDRYCLYMLEIDESVRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQNYA 323
Query: 477 -----VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
V+V G P E TE+ +GE+ ++ + + +R K+RAP++ ++ A+ +
Sbjct: 324 LMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSFYHIGALSD 383
Query: 532 MLKGYHVADAPLIIASIDPCYSCTER 557
+L G ++ADA +I S + + +R
Sbjct: 384 ILVGQYLADAVTVIGSTNAVFGEVDR 409
>pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain J99)
>gi|4155794|gb|AAD06770.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 159 bits (397), Expect = 1e-37
Identities = 115/386 (29%), Positives = 196/386 (49%), Gaps = 35/386 (9%)
Query: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
GP H L ++GE+I+ Y HRG EK+GE +TYN+ + +R+
Sbjct: 29 GPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGEN-MTYNEYMPTTDRLDYTS 87
Query: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
++ +YA A+E L ++EIP RA+ IRT+LLEL R+ +H+ ++ + A VG + F++A
Sbjct: 88 STSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFLYA 147
Query: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
++ RE + LME G R + +GGV D+ E + + + E+R E K+ ++ +L
Sbjct: 148 FKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMR-ECKKLIQGLL 206
Query: 382 NTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVP 440
+ N + R E VG++ K+A+ + + G R +G D R ++ + Y ELD+ VP
Sbjct: 207 DKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYE---LYKELDFDVP 263
Query: 441 VYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD------------------------ 476
V GD R + M E+ ESI I+EQ+I D
Sbjct: 264 VGNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQNYA 323
Query: 477 -----VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
V+V G P E TE+ +GE+ ++ + + +R K+RAP++ ++ A+ +
Sbjct: 324 LMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSFYHIGALSD 383
Query: 532 MLKGYHVADAPLIIASIDPCYSCTER 557
+L G ++ADA +I S + + +R
Sbjct: 384 ILVGQYLADAVTVIGSTNAVFGEVDR 409
>pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (strain MSB8)
>gi|4981769|gb|AAD36291.1|AE001778_12 (AE001778) NADH
dehydrogenase, 49 kDa subunit, putative [Thermotoga
maritima]
Length = 368
Score = 159 bits (397), Expect = 1e-37
Identities = 112/365 (30%), Positives = 184/365 (49%), Gaps = 12/365 (3%)
Query: 195 GTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLA 254
G + + GP H G+ ++V+G+ + + HRG EK+ E R Y+ + L
Sbjct: 2 GETKLFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNIS-LI 60
Query: 255 ERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGY 314
RIC + + YAMAIE++A VE+P+RA++IR ++LEL RI NH+ VG +G
Sbjct: 61 PRICVPEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGL 120
Query: 315 DTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVK 374
T R+ ++ + E L+G R + I GGVR+++ +E I + + I +
Sbjct: 121 YTASHWGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMTPKIEEMIWKTLDYIESRLP 180
Query: 375 RFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNE 434
+ ++ R G IL + A E V G RA+G + D R Y+
Sbjct: 181 DYENLIFKNRIVHSRLRGRLILTREQAVEMGVTGVGLRATGVEYDIR---KVDPYLFYDR 237
Query: 435 LDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD-VMVPVG------RLPEY 487
++++VP +GD +RV ++ E+ +SI I+ Q +++MP D V VP+G R+
Sbjct: 238 VEFEVPTATDGDAFSRVYLKFKEIPQSIKIIRQALEKMPQADRVNVPIGRGNGLRRIVPK 297
Query: 488 EEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTY-NNLPAVPEMLKGYHVADAPLIIA 546
A E+ RGE +V++ KNK YR VR +Y L + + L G + D P+ +A
Sbjct: 298 GMAYAHVESTRGEYGFFVVSDGKNKPYRVAVRGASYPQGLYGIEKYLPGTRIEDVPIWLA 357
Query: 547 SIDPC 551
++D C
Sbjct: 358 TMDVC 362
>sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432629|pir||D71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D RP354 - Rickettsia
prowazekii >gi|3860914|emb|CAA14814.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii]
Length = 389
Score = 157 bits (392), Expect = 4e-37
Identities = 120/390 (30%), Positives = 194/390 (48%), Gaps = 33/390 (8%)
Query: 196 TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
T T+ +GP H L + GE + + D HRG EK+ E + TY Q + +
Sbjct: 5 TITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHK-TYLQAIPYFD 63
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
R+ + ++A+A+E L + +P RA++IR L EL RI NH L +G A +G
Sbjct: 64 RLDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGAT 123
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKR 375
T + + RE +M ER++G+R GGV D+ + E+I + + + ++
Sbjct: 124 TPLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPENLLEDINKFIEQFPSKLND 183
Query: 376 FLEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNE 434
+E +LN N K R +G++ K A ++ GP R SG D R + Y+E
Sbjct: 184 -IENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLR---KSNPYDVYDE 239
Query: 435 LDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPV--GRLPE 486
+D++VP+ K GD R LVR+ E++ESI I++Q I +MP G V + P G++ E
Sbjct: 240 MDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQCIVKMPKGQVKTDDPKLTPPTRGKMKE 299
Query: 487 YEEAL---------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLP 527
EA+ G+ EA +GE Y+ + NK YR +++AP + +L
Sbjct: 300 SMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAHLQ 359
Query: 528 AVPEMLKGYHVADAPLIIASIDPCYSCTER 557
+ M KG+ +AD IIA++D + +R
Sbjct: 360 GLNFMSKGHLIADVITIIATLDIVFGEIDR 389
>pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain D NMA0016
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378794|emb|CAB83336.1| (AL162752) NADH
dehydrogenase I chain D [Neisseria meningitidis Z2491]
Length = 418
Score = 152 bits (379), Expect = 1e-35
Identities = 124/415 (29%), Positives = 195/415 (46%), Gaps = 60/415 (14%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE+IV D HRG EK+ E + TY Q L +R+
Sbjct: 9 TINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETK-TYLQALPYMDRL 67
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + +Y +A+E+LA +++P RA+YIR + E+ RI NHL+ +G A +G T
Sbjct: 68 DYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTA 127
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILD---------YRKEEILRVVRE 368
++A+R RE +M L E ++G R GGV RD+ D +R ++L+ + E
Sbjct: 128 ILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNE 187
Query: 369 IREEV---------KRF------LEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTAR 412
RE +RF LE +L N K R G+G++ + A + G R
Sbjct: 188 SREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLR 247
Query: 413 ASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM 472
SG + D R T+ Y+++D+ +PV GD R L RM+E+ +S+ I++Q + +
Sbjct: 248 GSGVEWDVR---KTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEWL 304
Query: 473 ---PGGDV-----MVPVGR----------------------LPEYEEALGFTEAHRGEVV 502
PG + P R +PE E E +GE
Sbjct: 305 RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPE-GETYTAVEHPKGEFG 363
Query: 503 HYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
Y+++ NK YR K+RAP + +L + EM KG+ +AD II + D + +R
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica]
>gi|10505202|gb|AAG18384.1|AF287134_9 (AF287134) NADH
dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 151 bits (377), Expect = 2e-35
Identities = 114/388 (29%), Positives = 189/388 (48%), Gaps = 33/388 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + TY Q L +R+
Sbjct: 16 TINFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIEFK-TYLQALPYFDRL 74
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++AIE++ ++ IP+RA+ IRT+ E+ R+ NHLL VG A VG T
Sbjct: 75 DYVSMMAQEHTYSLAIEKIGNIVIPERAKIIRTIFAEITRLLNHLLAVGCHAMDVGAMTP 134
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE +M ER++G R GGV DI +++ V + +
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSMDIPLGLLDDLYIFVNQFNYRLDEME 194
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + + +R +G++ A E+ G R SG D R +Q + Y+E+D+
Sbjct: 195 EMLTKSRIWKERLVDIGVVSAAKAIEWGFSGVMLRGSGISWDLRKNQPYE---IYSEIDF 251
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGRLPEYEEAL 491
+PV GD R LVR++E+ +SI+I+ + + ++ G + + P RL E + ++
Sbjct: 252 SIPVGNSGDCYDRYLVRVEEMRQSIYIISKCLTKIKEGPIKSNNYKISPPSRL-EMKNSM 310
Query: 492 ------------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAV 529
GF TEA +GE Y+++ K YR K++AP + +L A+
Sbjct: 311 EAVIHHFKYFSEGFVLPCGETYTSTEAPKGEFGVYLVSNNTEKPYRCKIKAPGFGHLQAL 370
Query: 530 PEMLKGYHVADAPLIIASIDPCYSCTER 557
+M KG+ +AD II + D + +R
Sbjct: 371 NDMSKGHLIADVVTIIGTQDIVFGEIDR 398
>pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225466|gb|AAF40698.1| (AE002381) NADH dehydrogenase
I, D subunit [Neisseria meningitidis MC58]
Length = 418
Score = 150 bits (375), Expect = 4e-35
Identities = 123/415 (29%), Positives = 194/415 (46%), Gaps = 60/415 (14%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE+IV D HRG EK+ E + TY Q L +R+
Sbjct: 9 TINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETK-TYLQALPYMDRL 67
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + +Y +A+E+L +++P RA+YIR + E+ RI NHL+ +G A +G T
Sbjct: 68 DYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTA 127
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILD---------YRKEEILRVVRE 368
++A+R RE +M L E ++G R GGV RD+ D +R ++L+ + E
Sbjct: 128 ILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNE 187
Query: 369 IREEV---------KRF------LEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTAR 412
RE +RF LE +L N K R G+G++ + A + G R
Sbjct: 188 SREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLR 247
Query: 413 ASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM 472
SG + D R T+ Y+++D+ +PV GD R L RM+E+ +S+ I++Q + +
Sbjct: 248 GSGVEWDVR---KTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEWL 304
Query: 473 ---PGGDV-----MVPVGR----------------------LPEYEEALGFTEAHRGEVV 502
PG + P R +PE E E +GE
Sbjct: 305 RVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPE-GETYTAVEHPKGEFG 363
Query: 503 HYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
Y+++ NK YR K+RAP + +L + EM KG+ +AD II + D + +R
Sbjct: 364 VYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica]
Length = 466
Score = 149 bits (373), Expect = 7e-35
Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GEEI+ D HRG EK+ E + TY Q L +R+
Sbjct: 84 TINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYK-TYMQALPYFDRL 142
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + +++A+E+L +VE+P R +YIRT+ E+ R+ NHL+ V A VG T
Sbjct: 143 DYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTP 202
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ + RE +M ER++G R GGV +D+ ++I + + +
Sbjct: 203 FLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIE 262
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + + R +G + + A + GP R SG D R AY+++D+
Sbjct: 263 ELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIR---KNAPYDAYDKVDF 319
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--------PVGRLPEYEE 489
VPV GD R L+RM E +S+ I+EQ + MP G V V P + E E
Sbjct: 320 DVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKEDME 379
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
AL G++ EA +GE+ YV++ + Y+ K+RAP + +L A
Sbjct: 380 ALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAHLGAFD 439
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
+ +G+ + DA II ++D + +R
Sbjct: 440 HIARGHFLPDAVAIIGTMDLVFGEVDR 466
>sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|11254570|pir||F81252 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D Cj1576c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968993|emb|CAB73564.1| (AL139079) NADH
dehydrogenase I chain D [Campylobacter jejuni]
Length = 408
Score = 148 bits (371), Expect = 1e-34
Identities = 108/380 (28%), Positives = 183/380 (47%), Gaps = 33/380 (8%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ +GP H L + GE++V Y HRG+EK+ E + Y + + +R+
Sbjct: 25 INLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMI-YQEFIPTTDRMD 83
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
I ++ +Y A+E+L +EIP RA IR +LLEL RI +HLLW+ A +G + F
Sbjct: 84 YIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVF 143
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
++ +R RE V+ L+E+ G R + +GGV D+ + EE+L + ++K + +
Sbjct: 144 LYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYED 203
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ + + R E VG++ + A + G R SG K D R ++ YNE+++
Sbjct: 204 LLDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEE---PYLLYNEVEFG 260
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIV--------------------------EQVIDQ- 471
VP +GD AR V M E ES+ I+ EQ++ Q
Sbjct: 261 VPYATQGDSYARYKVYMQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQN 320
Query: 472 --MPGGDVMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAV 529
+ V++ G P E TE+ +GE+ ++ + + YR K R P+Y +
Sbjct: 321 YSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFF 380
Query: 530 PEMLKGYHVADAPLIIASID 549
EML G ++AD I+ +++
Sbjct: 381 EEMLVGTYLADVVAIMGNVN 400
>gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melanogaster]
Length = 502
Score = 148 bits (370), Expect = 2e-34
Identities = 111/389 (28%), Positives = 182/389 (46%), Gaps = 31/389 (7%)
Query: 196 TSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAE 255
T + GP H L + E +++ D HRG EK+ E + TY Q L +
Sbjct: 118 TKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYK-TYTQALPYFD 176
Query: 256 RICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYD 315
R+ + + ++Y +A+E+L +VE+P RA+YIRT+ E+ R+ NH + +G + G
Sbjct: 177 RLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAI 236
Query: 316 TGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKR 375
T + RE + ER +G R GGV DI ++ + + + E +
Sbjct: 237 TPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINQFNERLDE 296
Query: 376 FLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNEL 435
+VV + + R G+G++ A + GP RA+G K D R Q AY+E+
Sbjct: 297 VEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQ---PYDAYDEM 353
Query: 436 DWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--------PVGRLPEY 487
D+ V V GD R LVRM E+ ES+ I++Q ID MP G++ V ++ E
Sbjct: 354 DFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAMPPGEIKVDDLKICPPQRSKMKEG 413
Query: 488 EEAL---------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPA 528
E L GF E+ +GE ++++ ++ YR K+R +Y +L
Sbjct: 414 MEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLAL 473
Query: 529 VPEMLKGYHVADAPLIIASIDPCYSCTER 557
+ +M + +AD II S+D + +R
Sbjct: 474 MAKMAPAHLLADVVAIIGSLDIVFGEIDR 502
>gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melanogaster]
Length = 452
Score = 145 bits (362), Expect = 1e-33
Identities = 115/388 (29%), Positives = 188/388 (47%), Gaps = 49/388 (12%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE ++ D HRG EK+ E + TY Q L +R+
Sbjct: 86 TLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYK-TYTQALPYFDRL 144
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + Y++A+E+L ++++P RA+YIRTL E+ RI NH++ VG A VG T
Sbjct: 145 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGALTP 204
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F + RE +M ER++G R GGV + R +E+
Sbjct: 205 FFWLFEEREKMMEFYERVSGARMHAAYIRPGGV--SLFAERLDEV--------------- 247
Query: 378 EVVLNTN-TFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
E VL TN +++R E +GI+ + A + G R SG K D R Q AYN ++
Sbjct: 248 EDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQ---PYDAYNLVN 304
Query: 437 WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR------- 483
+ VP+ +GD R L R++E+ +S+ I++Q ++QMP G++ + P R
Sbjct: 305 FDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPAGEIKTDDAKVAPPSRSEMKTSM 364
Query: 484 ----------LPEYEEALGFT----EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAV 529
Y+ G T EA +GE Y+++ ++ YR K++AP + +L A+
Sbjct: 365 EALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGFAHLAAL 424
Query: 530 PEMLKGYHVADAPLIIASIDPCYSCTER 557
++ K + +AD II ++D + +R
Sbjct: 425 EKIGKQHMLADVVAIIGTLDVVFGEIDR 452
>gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas americana]
>gi|6647647|sp|O21270|NUCM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432630|pir||S78164 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258363|gb|AAD11897.1| (AF007261) NADH
dehydrogenase, subunit 7 [Reclinomonas americana]
Length = 396
Score = 143 bits (358), Expect = 4e-33
Identities = 109/387 (28%), Positives = 184/387 (47%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + Y Q L +R+
Sbjct: 14 TMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYK-NYLQALPYFDRL 72
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++A+E+L E+P RA+YIR L E+ RI NHL+ V A VG T
Sbjct: 73 DYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVGAMTP 132
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ + RE +M ER++G R GGV +D+ E+I + ++ +
Sbjct: 133 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPMGLSEDIYKFAKQFGSRIDEIE 192
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
+V+ + + +R +G + + A ++ G R SG D R T+ Y+EL++
Sbjct: 193 DVLSSNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLR---KTQPYDVYDELEF 249
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV------PVGRL------- 484
+PV +GD R L+R++E+ +S+ ++ Q +++MP G + V P R+
Sbjct: 250 DIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNKMPTGVIKVDDKKISPPSRVDMKDSME 309
Query: 485 ----------PEYEEALGFT----EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
Y +G T EA +GE Y+++ +K YR K++AP +++L +
Sbjct: 310 ALIHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGFSHLQGLN 369
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M KG+ +AD II + D + +R
Sbjct: 370 FMSKGHMIADVVTIIGTQDIVFGEVDR 396
>sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6066183|gb|AAF03201.1|AF110138_33
(AF110138) NADH dehydrogenase subunit 7 [Nephroselmis
olivacea]
Length = 398
Score = 143 bits (358), Expect = 4e-33
Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + TY Q L +R+
Sbjct: 16 TLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYK-TYTQALPYFDRL 74
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++A+E+L E+P+RA+YIR L E+ RI NHLL + A VG T
Sbjct: 75 DYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVGALTP 134
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G+R GGV D+ E+I ++ +
Sbjct: 135 FLWAFEEREKLIEFYERVSGSRMHAAYIRPGGVACDLPANLCEDIYLFCQQFASRIDEME 194
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ N + +R +GI+ + A + G R SG D R T+ YN + +
Sbjct: 195 EMLTNNRIWKQRLVDIGIVTAENAFAWGFSGVLLRGSGVAWDLR---KTQPYDVYNRMIF 251
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR--LPEYEE 489
VPV +GD R L R++E+ +SI I+ Q ++Q+P G + + P R + + E
Sbjct: 252 DVPVGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQLPKGMIKADDKKITPPSRSQMKQSME 311
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
+L G+T EA +GE Y+++ N+ YR K+RAP + +L +
Sbjct: 312 SLIHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFLHLQGLD 371
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M K + +AD II + D + +R
Sbjct: 372 MMSKNHMLADVVTIIGTQDIVFGEVDR 398
>gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina]
>gi|10444182|gb|AAG17756.1|AF288090_32 (AF288090) NADH
dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 142 bits (355), Expect = 9e-33
Identities = 111/387 (28%), Positives = 184/387 (46%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
TV GP H L + GE I+ D HRG EK+ E + TY Q L +R+
Sbjct: 17 TVNFGPQHPAAHGVLRLILELNGETIIKADPHIGLLHRGTEKLIENK-TYIQGLPYFDRL 75
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + ++ +AIERL ++E+P RA++IR + E+ RI NHLL + A VG T
Sbjct: 76 DYVSMMINEHAFCLAIERLLNIEVPLRAQFIRVIFSEITRILNHLLAICCHAMDVGALTP 135
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
+ + RE +M ER++G R GGV +D+ +I + + +
Sbjct: 136 ILWGFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPLGLCADIFKFCEQFSSRIDELE 195
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + +R VG++ ++ A + GP R++G D R T Y++LD+
Sbjct: 196 ELLTENRIWKQRLVDVGVITFEQALNLGLTGPLLRSTGFSWDLR---RTHPYEIYDKLDF 252
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV------PVGR--LPEYEE 489
+P+ K GD R +R++E+ +S+ I+ Q ++ MP G V P R + E
Sbjct: 253 DIPIGKNGDSYDRYCIRIEEMRQSLSIIVQCLNNMPQGSFKVNNMKISPPSRVDMKRSME 312
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
+L GFT E +GE ++T NK YR K++AP + +L A+
Sbjct: 313 SLIHHFKYFSEGFTIPKGIVYAAVEHPKGEFGVSLVTDGTNKPYRCKIKAPGFIHLQALD 372
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
+ +G+ +AD II ++D + +R
Sbjct: 373 FLSRGHLLADLVTIIGTLDIVFGEIDR 399
>gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 141 bits (353), Expect = 2e-32
Identities = 114/387 (29%), Positives = 181/387 (46%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + TY Q L +R+
Sbjct: 15 TLNFGPQHPAAHGVLRLVLELDGEVVRKADPHVGLLHRGTEKLVEQK-TYLQALPYFDRL 73
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++ +E L D+ IP R+++IR + LE+ RI NHLL V A VG T
Sbjct: 74 DYVSIIAQEHTYSIGVETLLDLSIPLRSQFIRVIFLEITRILNHLLAVSCHALDVGAITP 133
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F + RE ++ ER++G R GGV DI +I + + F
Sbjct: 134 FFWGFEEREKLIEFYERVSGARMHAAYVRPGGVSFDIPKGLLNDIFYFCESFKVRLDEFE 193
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ N + +R +G++ +K + G R SG D R + + YN+L +
Sbjct: 194 ELLTNNRIWKQRLVNIGVVSAADSKNWGFSGVMLRGSGIPWDLRQNFPYE---VYNQLSF 250
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV-------PVGRLPEYE-E 489
++PV GD R L+R++E+ +SI I+ Q I+ MP G V P ++ + E
Sbjct: 251 EIPVGSNGDCYDRYLIRIEEIRQSISIIVQAINLMPEGPVKSFNYKFSNPSKKMMKNSIE 310
Query: 490 AL---------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
AL GF TEA +GE ++++ NK YR K++AP +++L +
Sbjct: 311 ALIHHFKYFTEGFPVNRGEVYVATEAPKGEFGVFLVSDGSNKPYRCKIKAPGFSHLQGLD 370
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M KG+ +AD II + D + +R
Sbjct: 371 FMSKGHLIADVVTIIGTQDIVFGEVDR 397
>gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
>gi|3914189|sp|Q37384|NUCM_ACACA NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1078746|pir||S53862 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Acanthamoeba
castellanii mitochondrion >gi|562066|gb|AAD11854.1|
(U12386) NADH dehydrogenase, subunit 7 [Acanthamoeba
castellanii]
Length = 401
Score = 141 bits (353), Expect = 2e-32
Identities = 115/388 (29%), Positives = 180/388 (45%), Gaps = 33/388 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + TY Q L +R+
Sbjct: 19 TMNFGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYK-TYIQALPYFDRL 77
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++AIE+L + +P RA+YIR + EL RI NH+L V A VG T
Sbjct: 78 DYVSMMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAMDVGALTP 137
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ + RE +M ER++G R GGV +D +I++ V + +
Sbjct: 138 FLWLFEEREKLMEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVE 197
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + +R VGI+ + A G R SG D R + + YN+L++
Sbjct: 198 ELLNGNRIWKQRLVDVGIVTAEEALSHGFSGVMLRGSGIAWDLRKNNPYE---VYNKLNF 254
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV------PVGR-------- 483
+P+ K GD R L+R+ E++ES+ I++Q + MP G + V P R
Sbjct: 255 NIPIGKNGDCYDRYLIRVYEMYESLNIIKQCLTAMPAGLIKVNDKKITPPERTDMKYSME 314
Query: 484 --------------LPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAV 529
+PE E EA +GE YV++ NK YR K++AP + +L ++
Sbjct: 315 SLIHHFKLYSEGFNVPE-NETYACVEAPKGEFGVYVVSDGSNKPYRCKIKAPGFLHLQSL 373
Query: 530 PEMLKGYHVADAPLIIASIDPCYSCTER 557
M KG+ +AD II + D + +R
Sbjct: 374 NSMSKGHMIADVVTIIGTQDIVFGEIDR 401
>sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
4) (NUO4) >gi|431018|gb|AAA03535.1| (L25055) NADH
dehydrogenase [Escherichia coli]
Length = 407
Score = 141 bits (352), Expect = 2e-32
Identities = 111/386 (28%), Positives = 181/386 (46%), Gaps = 34/386 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H L + GEEIVD Y HRG EK+GE R +++ + +RI +
Sbjct: 27 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTDRIEYL 85
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
G + + Y +A+E+LA + +PDR IR +L EL RI++HLL++ VG T
Sbjct: 86 GGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFF 145
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
A+ R+ + L+E +TG R +GGV D L + +LR + + E
Sbjct: 146 AFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHD-LPRGWDRLLREFLDWMPKRLASYEKA 204
Query: 381 LNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKV 439
NT +K R++GV + K A E+ G RA+G D R + + Y D+++
Sbjct: 205 ALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVR---KARPYSGYENFDFEI 261
Query: 440 PV-YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD---------------------- 476
PV D RV+++++EL +S+ I+EQ ++ MP G
Sbjct: 262 PVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET 321
Query: 477 -----VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
+ V G + E+ EA +G +Y+ + YR +VR P++ +L +P
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPA 381
Query: 532 MLKGYHVADAPLIIASIDPCYSCTER 557
++G V+D + + SID S +R
Sbjct: 382 AIRGSLVSDLIVYLGSIDFVMSDVDR 407
>gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
>gi|7110469|gb|AAF36941.1|AF222718_15 (AF222718) NADH
dehydrogenase subunit 7 [Chrysodidymus synuroideus]
Length = 398
Score = 141 bits (352), Expect = 2e-32
Identities = 108/387 (27%), Positives = 179/387 (45%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE IV+ D HRG EK+ E + TY Q L +R+
Sbjct: 16 TINFGPQHPAAHGVLRLILELDGEIIVNSDPHIGLLHRGTEKLIEYK-TYLQALPYFDRL 74
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++AIE+L +++IP RA+ IR L E+ R+ NHL+ VG A VG +
Sbjct: 75 DYVSMMAQEHTYSLAIEKLMNIKIPRRAQIIRVLFCEITRLLNHLVAVGCHALDVGAMSP 134
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
FM + RE +M ER++G R GGV D+ ++I +++ + +
Sbjct: 135 FMWGFEEREKLMEFYERVSGARMHAAYFRPGGVASDLPIGLLDDIFIFIKQFKIRLDEME 194
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + + +R +GI+ A + G R SG D R + YNEL++
Sbjct: 195 EMLTSNRIWKERLVDIGIVSAFDAINWGFSGVLLRGSGVPWDLR---KSNPYEIYNELNF 251
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV------------------ 479
PV GD R L+R++E+ +S+ ++ Q ++ + G +
Sbjct: 252 SYPVGTNGDCYDRYLIRIEEMRQSLSLISQCLNIINDGPIKTTNSKLTSPSLFELKNSME 311
Query: 480 ---------PVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
G +P + E TEA +GE Y+++ K YR K++AP + +L A+
Sbjct: 312 SLIHHFKYYTEGLIPGFGETYTATEAPKGEFGVYLISNNTEKPYRCKIKAPGFGHLQALN 371
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M G+ +AD II + D + +R
Sbjct: 372 FMASGHMIADVVTIIGTQDIVFGEVDR 398
>gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
>gi|11134161|sp|Q9TAJ7|NUCM_CAFRO NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6180092|gb|AAF05789.1|AF193903_12
(AF193903) NADH dehydrogenase subunit 7 [Cafeteria
roenbergensis]
Length = 398
Score = 141 bits (352), Expect = 2e-32
Identities = 113/400 (28%), Positives = 188/400 (46%), Gaps = 33/400 (8%)
Query: 186 KIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRL 245
K +LK+ T+ GP H L + GE I + D HRG EK+ E R
Sbjct: 4 KRKLKETEIKDFTLNFGPQHPAAHGVLRLILELNGETIKNADPHIGLLHRGTEKLIENR- 62
Query: 246 TYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWV 305
Y Q L +R+ + +Y++A+ERL + IP RA++IR L E+ RI NHLL +
Sbjct: 63 NYLQALPYFDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQWIRVLFSEITRILNHLLAI 122
Query: 306 GIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRV 365
G + VG T + + RE +M ER++G R GGV +D+ E++
Sbjct: 123 GCHSMDVGAMTPLLWGFEEREKLMEFYERVSGARMHASYIRPGGVAQDLPSGFVEDVYSF 182
Query: 366 VREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQA 425
+ + + E++ N + +R VGI+ K A + G R++G D R Q
Sbjct: 183 ILDFSVRLDEIEELLTNNRIWKQRLVNVGIVTAKQAIQNGFSGVLLRSTGIPWDLRRSQP 242
Query: 426 TKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MV 479
+ Y+++ +++PV GD R L+RM E+ +S+ I+ + +PGG + V
Sbjct: 243 YE---IYDKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMACLKYLPGGSIKSDDKKFV 299
Query: 480 PVGRLPEYEEAL------------GF----------TEAHRGEVVHYVMTGEKNKVYRWK 517
P R E + ++ GF EA +GE+ ++++ N+ +R K
Sbjct: 300 PPLRW-EMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGEMGVFLISDGSNQPFRCK 358
Query: 518 VRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
++AP + +L +PEM K + +AD II + D + +R
Sbjct: 359 IKAPGFFHLQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398
>dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4) (NUO4). [Escherichia coli]
>gi|1799653|dbj|BAA16120.1| (D90860) NADH DEHYDROGENASE
I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 4) (NUO4). [Escherichia coli]
Length = 407
Score = 140 bits (350), Expect = 4e-32
Identities = 111/386 (28%), Positives = 180/386 (45%), Gaps = 34/386 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H L + GEEIVD Y HRG EK+GE R +++ + +RI +
Sbjct: 27 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTDRIEYL 85
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
G + + Y +A+E+LA + +PDR IR +L EL RI++HLL++ VG T
Sbjct: 86 GGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFF 145
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
A+ R+ + L+E +TG R +GGV D L + +LR + + E
Sbjct: 146 AFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHD-LPRGWDRLLREFLDWMPKRLASYEKA 204
Query: 381 LNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKV 439
NT +K R++GV K A E+ G RA+G D R + + Y D+++
Sbjct: 205 ALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVR---KARPYSGYENFDFEI 261
Query: 440 PV-YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD---------------------- 476
PV D RV+++++EL +S+ I+EQ ++ MP G
Sbjct: 262 PVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET 321
Query: 477 -----VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
+ V G + E+ EA +G +Y+ + YR +VR P++ +L +P
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPA 381
Query: 532 MLKGYHVADAPLIIASIDPCYSCTER 557
++G V+D + + SID S +R
Sbjct: 382 AIRGSLVSDLIVYLGSIDFVMSDVDR 407
>emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Escherichia coli]
Length = 407
Score = 140 bits (350), Expect = 4e-32
Identities = 111/386 (28%), Positives = 181/386 (46%), Gaps = 34/386 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H L + GEEIVD Y HRG EK+GE R +++ + +RI +
Sbjct: 27 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTDRIEYL 85
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
G + + Y +A+E+LA + +PDR IR +L EL RI++HLL++ VG T
Sbjct: 86 GGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFF 145
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
A+ R+ + L+E +TG R +GGV D L + +LR + + E
Sbjct: 146 AFTDRQKIYDLVEAITGFRMHPAWFRIGGVADD-LPRGWDRLLREFLDWMPKRLASYEKA 204
Query: 381 LNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKV 439
NT +K R++GV + K A E+ G RA+G D R + + Y D+++
Sbjct: 205 ALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVR---KARPYSGYENFDFEI 261
Query: 440 PV-YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD---------------------- 476
PV D RV+++++EL +S+ I+EQ ++ MP G
Sbjct: 262 PVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKRDHPLTTPPPKERTLQHIET 321
Query: 477 -----VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPE 531
+ V G + E+ EA +G +Y+ + YR +VR P++ +L +P
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPA 381
Query: 532 MLKGYHVADAPLIIASIDPCYSCTER 557
++G V+D + + SID S +R
Sbjct: 382 AIRGSLVSDLIVYLGSIDFVMSDVDR 407
>sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1076191|pir||S53054 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - brown alga
(Pylaiella littoralis) >gi|728615|emb|CAA88557.1|
(Z48623) NADH dehydrogenase (ubiquinone), subunit 7
[Pilayella littoralis]
Length = 398
Score = 139 bits (348), Expect = 6e-32
Identities = 107/387 (27%), Positives = 182/387 (46%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + D HRG EK+ E + TY Q L +R+
Sbjct: 16 TINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAK-TYFQALPYFDRL 74
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +YA+++E L V IP RA++IR L E+ RI NHLL VG A VG T
Sbjct: 75 DYVSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE +M ER++G R GGV +DI ++I V + + +
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIE 194
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + + +R +G++ + A ++ G R SG + D R ++ + Y++L++
Sbjct: 195 EMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYE---IYSDLNF 251
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYE--------- 488
+ V K GD R L R++E+ +S+ I+ Q +++MP G V + ++
Sbjct: 252 QGVVGKTGDCYDRYLARVEEMRQSLSIIYQCLNKMPRGSVKIDDAKISPPSRSEVKQSME 311
Query: 489 ------------------EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
E TEA +GE Y+++ ++ YR K++AP +++L +
Sbjct: 312 SLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPYRCKIKAPGFSHLQGLN 371
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M + +AD II + D + +R
Sbjct: 372 FMACSHMLADVVTIIGTQDIVFGEVDR 398
>gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi]
>gi|10444250|gb|AAG17816.1|AF288092_41 (AF288092) NADH
dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 139 bits (347), Expect = 8e-32
Identities = 110/395 (27%), Positives = 177/395 (43%), Gaps = 31/395 (7%)
Query: 190 KKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQ 249
KK + GP H + + GE I + D HRG EK+ E + TY Q
Sbjct: 5 KKQTFNNFILNFGPQHPAAHGVLRLIVELDGEIIKNADPHIGLLHRGTEKLLEYK-TYIQ 63
Query: 250 VLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAA 309
L +R+ + +Y +AIERL E+P RA+YIR L E+ R+ NHLL + A
Sbjct: 64 GLPYFDRLDYVSMMCQEHTYCLAIERLLKCEVPLRAQYIRVLFSEITRLLNHLLSITTHA 123
Query: 310 HLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREI 369
VG T F+ A+ RE +M ER++G R GGV D+ +I +
Sbjct: 124 MDVGALTPFLWAFEEREKLMEFYERVSGARMHANYFRPGGVSYDLPKGLLHDIYDFIYSF 183
Query: 370 REEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTA 429
+ E++ + +R +G++ Y+ A + G R SG D R +
Sbjct: 184 ASRIDEMEELLTTNRIWKQRLVDIGVVNYRDALDMGFTGVMLRGSGIPWDLR---KCEPY 240
Query: 430 TAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRL-PEYE 488
Y +L++ +PV GD R LVRM E+ +SI I+ Q ++++P G V V ++ P Y
Sbjct: 241 EIYKQLNFYIPVGIYGDCYDRYLVRMSEMRQSISIIHQCLNKIPNGLVRVDNHKITPPYR 300
Query: 489 EAL--------------------------GFTEAHRGEVVHYVMTGEKNKVYRWKVRAPT 522
+ + G EA +GE +++ N YR K+R+P
Sbjct: 301 KQIKTSMESLIHHFKFYSEGINVPQGISYGGVEAPKGETGALLVSNGSNMPYRCKIRSPG 360
Query: 523 YNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
Y +L + ++ G+ +AD +I ++D + +R
Sbjct: 361 YAHLQGINHVISGHMIADLVTVIGTLDIVFGEVDR 395
>gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]
>gi|6692638|gb|AAF24781.1|U17009_13 (U17009) NADH
dehydrogenase subunit 7 [Phytophthora infestans]
Length = 392
Score = 139 bits (346), Expect = 1e-31
Identities = 107/387 (27%), Positives = 176/387 (44%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
++ GP H L + GE + D HRG EK+ E + Y Q L +R+
Sbjct: 10 SINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYK-NYLQALPYFDRL 68
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y +AIE+L + +IP RA+YIR L E+ RI NHLL V A VG T
Sbjct: 69 DYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVGAMTP 128
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
+ + RE +M ER++G R GGV +D+ +I + +
Sbjct: 129 YFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPKGLLNDIYIFCDQFNTRLDEIE 188
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ N + +R +GI+ K A G R SG D R T+ Y++LD+
Sbjct: 189 EMLTNNRIWKQRLVDIGIVSAKDALNLGFSGVMLRGSGISWDLR---KTQPYEIYDQLDF 245
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP----------------- 480
+PV GD R L+R++E+ +SI I+ Q+++++P G + +
Sbjct: 246 DIPVGTNGDCYDRYLIRIEEMRQSIRIILQILNKIPNGPIKLDDKKITNPNRIQIKNSME 305
Query: 481 --VGRLPEYEEALGFT--------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
+ Y E + EA +GE Y+++ NK YR K+++P + +L A+
Sbjct: 306 SLIHHFKYYSENISINSGETYTVIEAPKGEYGVYLVSDGTNKPYRCKIKSPGFLHLQALD 365
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
+ K + +AD II ++D + +R
Sbjct: 366 FLAKNHMIADVVTIIGTLDVVFGEIDR 392
>dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella patens]
Length = 393
Score = 138 bits (345), Expect = 1e-31
Identities = 111/387 (28%), Positives = 183/387 (46%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + + HRG EK+ E + TY Q L +R+
Sbjct: 11 TLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYK-TYLQALPYFDRL 69
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++A+E+L + E+P RA+YIR L E+ RI NHLL + A VG T
Sbjct: 70 DYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 129
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G R GGV +D+ E+I ++ +
Sbjct: 130 FLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIE 189
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ N + +R +G + + A ++ G R SG D R + YN+L +
Sbjct: 190 EMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLR---KSAPYDVYNQLSF 246
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR--LPEYEE 489
VPV GD R +R++E+ +SI I+ Q ++QMP G + + P R + + E
Sbjct: 247 DVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPSGMIKADDRKLCPPSRSQMKQSME 306
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
+L GF+ EA +GE ++++ N+ YR K+RAP + +L +
Sbjct: 307 SLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLD 366
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M K + +AD II + D + +R
Sbjct: 367 FMSKHHMLADVVTIIGTQDIVFGEVDR 393
>pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli
Length = 406
Score = 138 bits (344), Expect = 2e-31
Identities = 113/389 (29%), Positives = 184/389 (47%), Gaps = 41/389 (10%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H + L + GEEIVD Y HRG EK+GE R +++ + +RI +
Sbjct: 27 LGPNHRRADGAFRTVLQLDGEEIVDCVPDIGYHHRGAEKMGE-RQSWHSYIPYTDRIEYL 85
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
G + + Y +A+E+LA + +PDR IR +L EL RI++HLL++ VG T
Sbjct: 86 GGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFF 145
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDI--LDYRKEEILR-VVREIREEVKRFL 377
A+ R+ + L+E +TG R +GGVRR L E L + + + K L
Sbjct: 146 AFTDRQKIYDLVEAITGFRMHPAWFRIGGVRRPAARLGSPAAEFLDWMPKRLASYEKAAL 205
Query: 378 EVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
+ NT +K R++GV + K A E+ G RA+G D R + + Y D
Sbjct: 206 Q-----NTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVR---KARPYSGYENFD 257
Query: 437 WKVPV-YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD------------------- 476
+++PV D RV+++++EL +S+ I+EQ ++ MP G
Sbjct: 258 FEIPVGGGVSDCYTRVMLKVEELGQSLRILEQCLNNMPEGPFNRDHPLTTPPPKERTLQH 317
Query: 477 --------VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPA 528
+ V G + E+ EA +G +Y+ + YR +VR P++ +L
Sbjct: 318 IETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQ 377
Query: 529 VPEMLKGYHVADAPLIIASIDPCYSCTER 557
+P ++G V+D + + SID S +R
Sbjct: 378 IPAAIRGSLVSDLIVYLGSIDFVMSDVDR 406
>gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit D [Pseudomonas fluorescens]
Length = 409
Score = 137 bits (342), Expect = 3e-31
Identities = 99/376 (26%), Positives = 173/376 (45%), Gaps = 31/376 (8%)
Query: 201 MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGI 260
+GP H L + GEEIVD Y HRG EK+ E R +++ + +RI +
Sbjct: 30 LGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAE-RQSWHSFIPYTDRIDYL 88
Query: 261 CGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMH 320
G +++ Y +++E+LA +++P++ IR ++ E RI +HLL++G VG T
Sbjct: 89 GGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFF 148
Query: 321 AWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV 380
+ R+ ++E +TG R +GGV D+ ++ + V + + + + +
Sbjct: 149 TFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWMPKRLDEYTKAA 208
Query: 381 LNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVP 440
L + R GV K A E+ V G R++G D R + + Y +++VP
Sbjct: 209 LQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLR---KARPYSGYENFEFEVP 265
Query: 441 VYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGD------------------------ 476
+ GD R +VR++E+ +SI I++Q + MP G
Sbjct: 266 LAANGDAYDRCMVRVEEMRQSIKIIDQCMRNMPEGPYKADHPLTTPPPKERTLQHIETLI 325
Query: 477 ---VMVPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEML 533
+ V G + E+ EA +G +Y+ + YR ++R P+Y +L +P ++
Sbjct: 326 THFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQQIPSVI 385
Query: 534 KGYHVADAPLIIASID 549
KG VAD + SID
Sbjct: 386 KGSMVADLIAYLGSID 401
>sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 1) >gi|5650737|emb|CAB51623.1| (AJ245398) nuoD1
[Sinorhizobium meliloti]
Length = 396
Score = 137 bits (341), Expect = 4e-31
Identities = 109/390 (27%), Positives = 175/390 (43%), Gaps = 35/390 (8%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ GP H L + GE + VD HRG EK+ E + TY Q + +R+
Sbjct: 11 INFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAK-TYLQAIPYFDRLD 69
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ ++A+A+ERL ++P R + IR L E+ RI +HLL V A VG T
Sbjct: 70 YVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPP 129
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ + RE +M ER G R GGV +D+ E+I + + V E
Sbjct: 130 LWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPHQLVEDIGNWIDPFLKTVDDIDE 189
Query: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
++ F +R +G++ + A + G R SG D R Q + Y++L++
Sbjct: 190 LLTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYE---CYSDLEFD 246
Query: 439 VPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPV------------GRLPE 486
+P+ K GD R L+RM E+ +S I+ Q +D++ G + PV G +
Sbjct: 247 IPIGKNGDCFDRYLIRMIEMRQSARIMRQCVDRLLGDAKIGPVSSLDGKIVPPKRGEMKR 306
Query: 487 YEEAL-------------------GFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLP 527
EAL EA +GE Y+++ NK YR K+RAP Y +L
Sbjct: 307 SMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQ 366
Query: 528 AVPEMLKGYHVADAPLIIASIDPCYSCTER 557
A+ + +G+ +AD ++ S+D + +R
Sbjct: 367 AMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (COMPLEX I-49KD)
(CI-49KD) >gi|89676|pir||S04104 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 49K chain - bovine
Length = 430
Score = 134 bits (335), Expect = 2e-30
Identities = 107/421 (25%), Positives = 193/421 (45%), Gaps = 40/421 (9%)
Query: 168 VYPLRKCMDYRYSPMAEPKIELKKPPEGTS----TVPMGPLHMGIEEPAHFKLFVKGEEI 223
+YP ++ ++ P + PP+ T T+ GP H + + GE +
Sbjct: 19 MYPTKETAHWKPPPWNDVD-----PPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMV 73
Query: 224 VDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPD 283
D HRG EK+ E + TY Q L +R+ + + +Y++A+E+L ++ P
Sbjct: 74 RKCDPHIGLLHRGTEKLIEYK-TYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPP 132
Query: 284 RARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYG 343
RA++IR L E+ R+ NH++ V A +G T F + RE + ER++G R
Sbjct: 133 RAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAA 192
Query: 344 MNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKE 403
GGV +D+ ++I + + E++ N + R +GI+ + A
Sbjct: 193 YVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALN 252
Query: 404 FSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIW 463
+ G R SG + D R T+ Y+++++ VP+ GD R L R++E+ +SI
Sbjct: 253 YGFSGVMLRGSGIQWDLR---KTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIR 309
Query: 464 IVEQVIDQMPGGDVMVPVGRLPE-----------------------YEEALGFT----EA 496
I+ Q +++MP G++ V ++ Y+ G T EA
Sbjct: 310 IISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEA 369
Query: 497 HRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTE 556
+GE Y+++ ++ YR K++AP + +L + +M KG+ +AD II + D + +
Sbjct: 370 PKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVD 429
Query: 557 R 557
R
Sbjct: 430 R 430
>emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 134 bits (335), Expect = 2e-30
Identities = 107/421 (25%), Positives = 193/421 (45%), Gaps = 40/421 (9%)
Query: 168 VYPLRKCMDYRYSPMAEPKIELKKPPEGTS----TVPMGPLHMGIEEPAHFKLFVKGEEI 223
+YP ++ ++ P + PP+ T T+ GP H + + GE +
Sbjct: 17 MYPTKETAHWKPPPWNDVD-----PPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMV 71
Query: 224 VDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPD 283
D HRG EK+ E + TY Q L +R+ + + +Y++A+E+L ++ P
Sbjct: 72 RKCDPHIGLLHRGTEKLIEYK-TYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPP 130
Query: 284 RARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYG 343
RA++IR L E+ R+ NH++ V A +G T F + RE + ER++G R
Sbjct: 131 RAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAA 190
Query: 344 MNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKE 403
GGV +D+ ++I + + E++ N + R +GI+ + A
Sbjct: 191 YVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALN 250
Query: 404 FSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIW 463
+ G R SG + D R T+ Y+++++ VP+ GD R L R++E+ +SI
Sbjct: 251 YGFSGVMLRGSGIQWDLR---KTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIR 307
Query: 464 IVEQVIDQMPGGDVMVPVGRLPE-----------------------YEEALGFT----EA 496
I+ Q +++MP G++ V ++ Y+ G T EA
Sbjct: 308 IISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEA 367
Query: 497 HRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTE 556
+GE Y+++ ++ YR K++AP + +L + +M KG+ +AD II + D + +
Sbjct: 368 PKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVD 427
Query: 557 R 557
R
Sbjct: 428 R 428
>pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wheat
mitochondrion
Length = 394
Score = 134 bits (334), Expect = 3e-30
Identities = 108/387 (27%), Positives = 176/387 (44%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + + HRG EK+ E + TY Q L +R+
Sbjct: 12 TLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYK-TYLQALPYFDRL 70
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++A+ERL + E+P RA+YIR L E+ RI NHLL + A VG T
Sbjct: 71 DYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 130
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G R GGV +D+ +I ++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELE 190
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + +R +G + + AK++ G R SG D R Y++LD+
Sbjct: 191 EMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLR---RAAPYDVYDQLDF 247
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR-------- 483
VPV GD R +R++E+ +S+ I+ Q ++QMP G + + P R
Sbjct: 248 DVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMKLSME 307
Query: 484 -----LPEYEEALGF--------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
Y E EA +GE ++++ N+ YR K+RAP + +L +
Sbjct: 308 SLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLD 367
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M K + +AD II + D + +R
Sbjct: 368 FMSKHHMLADVVTIIGTQDIVFGEVDR 394
>dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physarum polycephalum]
Length = 401
Score = 133 bits (332), Expect = 5e-30
Identities = 110/397 (27%), Positives = 180/397 (44%), Gaps = 42/397 (10%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ GP H + + GE I + D HRG EK+ E + + Q L +R+
Sbjct: 9 INFGPQHPAAHGVLRMVVELNGEVIQNCDPHIGLLHRGTEKLIEHK-NFLQSLPYFDRLD 67
Query: 259 GICGYQHSVSYAMAIERLAD----------VEIPDRARYIRTLLLELERIHNHLLWVGIA 308
+ +Y++A+E L + ++IP+RARYIR L LE+ RI NHLL V
Sbjct: 68 YVSMMAQEHAYSLAVENLFNDLCAKALLPYIDIPERARYIRVLFLEITRILNHLLAVTTH 127
Query: 309 AHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVRE 368
A VG T F+ A+ RE ++ ER++G R GGV D+ +I +
Sbjct: 128 AMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAYIRPGGVAYDLPIGLLNDIYEFLTP 187
Query: 369 IREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKT 428
+++ E++ + F R +G + Y VAK+ + G R SG D R
Sbjct: 188 FSKKLNDMEELLTDNRIFKDRVVNIGKVTYDVAKDHAFSGVMVRGSGIPYDLR---KIYN 244
Query: 429 ATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPE-- 486
YNE ++K+PV GD R ++R+ E+ ES I+ QV +++ G + VP +
Sbjct: 245 YENYNEFNFKIPVGLNGDCYDRFMIRVTEMRESCSIIAQVCERITDGFITVPFAKFVNPT 304
Query: 487 -----------------------YEEALGFT--EAHRGEVVHYVMTGEKN-KVYRWKVRA 520
EA+ +T EA +GE + + + N K YR +RA
Sbjct: 305 RSDMKHLMEALIQHFKFFSNGIIVPEAIMYTSVEAPKGEFGTLIASYQNNTKPYRCHIRA 364
Query: 521 PTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
P +++L A+ + + + +AD II ++D + +R
Sbjct: 365 PGFHHLAAINRVSQNHSLADVVAIIGTLDIVFGEVDR 401
>pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoD -
Streptomyces coelicolor >gi|5042274|emb|CAB44528.1|
(AL078618) nuoD, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 440
Score = 133 bits (331), Expect = 6e-30
Identities = 107/404 (26%), Positives = 180/404 (44%), Gaps = 49/404 (12%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H L + GE + + Y H GIEK E R T+ Q R+
Sbjct: 41 VNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYR-TWTQGTTFVTRMD 99
Query: 259 GICGYQHSVSYAMAIERLA--DVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDT 316
+ + + +Y + +E+L D +IPDRA IR LL+EL R+ +HL+ + +G T
Sbjct: 100 YLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGGMELGATT 159
Query: 317 GFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRF 376
++ +R RE ++ + E +TG R + GG+ +D+ ++I V+++ + + +
Sbjct: 160 IMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMNKNLPEY 219
Query: 377 LEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELD 436
++ F R + VG L GP R++G D R T+ Y D
Sbjct: 220 DKLATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSTGLPHDLR---KTQPYCGYETYD 276
Query: 437 WKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--------------PVG 482
+ VP D R L+R++E+ +S+ IVEQ +D++ G VMV P G
Sbjct: 277 FDVPTADTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQPGPVMVADKKIAWPAQLALGPDG 336
Query: 483 ---RLPEYEEALGFT--------------------------EAHRGEVVHYVMTGEKNKV 513
L ++ +G + E+ +GE+ +V++ +
Sbjct: 337 LGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPAQVYTAVESPKGELGVHVVSDGGTRP 396
Query: 514 YRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
+R R P++ NL A+ M +G VAD + +ASIDP +R
Sbjct: 397 FRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
>gi|6647670|sp|Q23883|NUCM_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|11254566|pir||T43763 NADH dehydrogenase
chain 7 [imported] - slime mold (Dictyostelium
discoideum) mitochondrion >gi|1088421|dbj|BAA04731.1|
(D21196) 49kd subunit of iron-sulphur subcomplex of
NADH-ubiquinone reductase [Dictyostelium discoideum]
>gi|4958890|dbj|BAA78067.1| (AB000109) NADH
dehydrogenase subunit 7 [Dictyostelium discoideum]
Length = 406
Score = 132 bits (330), Expect = 8e-30
Identities = 102/393 (25%), Positives = 184/393 (45%), Gaps = 37/393 (9%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H + ++ E +V V+ HRG EK+ EG+ TY Q L +R+
Sbjct: 18 TLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGK-TYTQALPYFDRL 76
Query: 258 CGICGYQHSVSYAMAIERL------ADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHL 311
+ +Y++A+ERL ++EIP RA+ IR L E+ R+ NH++ A
Sbjct: 77 DYVSMNVQEHAYSLAVERLYLDSLDIELEIPQRAKVIRVLFSEITRVLNHIMATTTHAMD 136
Query: 312 VGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIRE 371
VG T F+ A+ RE +M ER++G R GGV D+ E+I + V + R+
Sbjct: 137 VGALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAFDLPMNISEDIYKFVIQYRK 196
Query: 372 EVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATA 431
++ ++++N + +R +GI+ + A + GP R +G D R +
Sbjct: 197 RLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGFTGPLLRGAGIVYDIRKNYPYDD--- 253
Query: 432 YNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVID-------QMPGGDVMVP---- 480
Y++ D+K+ + +E + R ++RM E+++S+ I+EQ ++ ++ G ++ P
Sbjct: 254 YDKYDFKIIIGEENNSYTRFIIRMKEMYQSLSIIEQALNNLRPGLIKLEGVNITAPDRAF 313
Query: 481 ----------------VGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTYN 524
G + E EA +GE Y+ + K YR +++AP +
Sbjct: 314 VKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFGIYLNANDTAKPYRCRIKAPGFL 373
Query: 525 NLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
+L + M K + +AD +I + D + +R
Sbjct: 374 HLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406
>sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|281484|pir||F42573 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 48K chain -
Paracoccus denitrificans >gi|150623|gb|AAA03038.1|
(M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 132 bits (329), Expect = 1e-29
Identities = 117/398 (29%), Positives = 173/398 (43%), Gaps = 53/398 (13%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ GP H L + GE + D HRG EK+ E R TY Q L +R+
Sbjct: 29 INFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESR-TYLQNLPYLDRLD 87
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ ++ +AIERL IP RA IR L E+ RI NHL+ V A VG T
Sbjct: 88 YVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPP 147
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRF-- 376
+ + RE +M ER G R GGV +D+ ++L + E E +
Sbjct: 148 LWGFEAREELMIFYERACGARLHAAYFRPGGVHQDL----PPDLLDDIEEWCERFPKLVD 203
Query: 377 -LEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNE 434
L+ +L N K R +GI+ A ++ G R SG D R Q + Y+E
Sbjct: 204 DLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYE---CYDE 260
Query: 435 LDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM---PGGDVM------------- 478
D+++PV + GD R L RM E+ ES I++Q + ++ P GDV+
Sbjct: 261 FDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEM 320
Query: 479 -------------------VPVGRLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWKVR 519
VP G E E +GE Y++ NK +R K+R
Sbjct: 321 KRDMESLIHHFKLYTEGFKVPAG------EVYAAVEGPKGEFGVYLVADGTNKPWRAKLR 374
Query: 520 APTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
AP + +L ++ M +G+ +AD P IIA++D + +R
Sbjct: 375 APGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105131|gb|AAF83119.1|AE003884_4 (AE003884)
NADH-ubiquinone oxidoreductase, NQO4 subunit [Xylella
fastidiosa]
Length = 435
Score = 132 bits (329), Expect = 1e-29
Identities = 111/414 (26%), Positives = 188/414 (44%), Gaps = 58/414 (14%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE +V D HRG EK+ E + +NQ + +R+
Sbjct: 26 TMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESK-PFNQSIGYMDRL 84
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ + +Y AIE L ++ P+RA+YIRT+ E+ RI NHL+W+G A +G
Sbjct: 85 DYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAV 144
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILD---------YRKEEILRVVRE 368
++A+R RE +M + E ++G R GGV RD+ D + K + L+ +
Sbjct: 145 MLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALKRLNA 204
Query: 369 IRE----------------EVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTAR 412
RE + + ++ + + +R GVG++ VAK + + G R
Sbjct: 205 AREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLR 264
Query: 413 ASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVID-- 470
SG D R Q Y+ +D+ +P+ GD R L R+ E+ ES I++Q +
Sbjct: 265 GSGVAWDLRKKQ---PYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWL 321
Query: 471 QMPGGDVMVPVGRL--PEYE-------------------------EALGFTEAHRGEVVH 503
++ G VMV ++ P+ E E EA +GE
Sbjct: 322 KVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGC 381
Query: 504 YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
Y+++ NK +R +RAP + +L ++ +++GY +AD +I + D + +R
Sbjct: 382 YLISDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432633|pir||E70647 probable nuoD protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781220|emb|CAB06291.1| (Z83867) nuoD [Mycobacterium
tuberculosis]
Length = 440
Score = 132 bits (329), Expect = 1e-29
Identities = 112/405 (27%), Positives = 181/405 (44%), Gaps = 51/405 (12%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V MGP H L ++GE +V+ Y H GIEK E R V F+ R+
Sbjct: 41 VNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVT-RMD 99
Query: 259 GICGYQHSVSYAMAIERLADV--EIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDT 316
+ + + +Y + +E+L + EIP+R IR L++EL RI +HL+ + +G T
Sbjct: 100 YLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMT 159
Query: 317 GFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRF 376
+R RE V+ L E++TG R GGV +D+ EI ++++R+ ++
Sbjct: 160 PMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLREM 219
Query: 377 LEVVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNEL 435
E +LN N K R +GVG L + GP R++G D R ++ Y
Sbjct: 220 GE-LLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLR---KSEPYCGYQHY 275
Query: 436 DWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVP--------------- 480
++ V D R ++R+ E++ES+ IVEQ +D++ G M+
Sbjct: 276 EFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQVGPD 335
Query: 481 -VGRLPEY--------EEAL-------------------GFTEAHRGEVVHYVMTGEKNK 512
+G P++ EAL E+ RGE+ ++++ +
Sbjct: 336 GLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTR 395
Query: 513 VYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
YR R P++ NL +V M +G VAD +ASIDP +R
Sbjct: 396 PYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)
(NADH-coenzyme Q reductase); NADH-ubiquinone
oxidoreductase Fe-S protein 2 [Homo sapiens]
>gi|7432632|pir||JE0193 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain NDUFS2 precursor - human
>gi|3337443|gb|AAC27453.1| (AF050640) NADH-ubiquinone
oxidoreductase NDUFS2 subunit [Homo sapiens]
Length = 463
Score = 132 bits (328), Expect = 1e-29
Identities = 103/397 (25%), Positives = 185/397 (45%), Gaps = 35/397 (8%)
Query: 192 PPEGTS----TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTY 247
PP+ T T+ GP H + + GE + D HRG EK+ E + TY
Sbjct: 71 PPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYK-TY 129
Query: 248 NQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGI 307
Q L +R+ + + +Y++A+E+L ++ P RA++IR L E+ R+ NH++ V
Sbjct: 130 LQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTT 189
Query: 308 AAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVR 367
A +G T F + RE + ER++G R GGV +D+ ++I + +
Sbjct: 190 HALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSK 249
Query: 368 EIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATK 427
+ E++ N + R +G++ + A + G R SG + D R T+
Sbjct: 250 NFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLR---KTQ 306
Query: 428 TATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPE- 486
Y+++++ VPV GD R L R++E+ +S+ I+ Q +++MP G++ V ++
Sbjct: 307 PYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPP 366
Query: 487 ----------------------YEEALGFT----EAHRGEVVHYVMTGEKNKVYRWKVRA 520
Y+ G T EA +GE Y+++ ++ YR K++A
Sbjct: 367 KRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKA 426
Query: 521 PTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
P + +L + +M KG+ +AD II + D + +R
Sbjct: 427 PGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|3540239|gb|AAC34362.1| (AF013160)
NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor
[Homo sapiens]
Length = 463
Score = 132 bits (328), Expect = 1e-29
Identities = 103/397 (25%), Positives = 185/397 (45%), Gaps = 35/397 (8%)
Query: 192 PPEGTS----TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTY 247
PP+ T T+ GP H + + GE + D HRG EK+ E + TY
Sbjct: 71 PPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYK-TY 129
Query: 248 NQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGI 307
Q L +R+ + + +Y++A+E+L ++ P RA++IR L E+ R+ NH++ V
Sbjct: 130 LQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTT 189
Query: 308 AAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVR 367
A +G T F + RE + ER++G R GGV +D+ ++I + +
Sbjct: 190 HALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSK 249
Query: 368 EIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATK 427
+ E++ N + R +G++ + A + G R SG + D R T+
Sbjct: 250 NFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLR---KTQ 306
Query: 428 TATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPE- 486
Y+++++ VPV GD R L R++E+ +S+ I+ Q +++MP G++ V ++
Sbjct: 307 PYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPP 366
Query: 487 ----------------------YEEALGFT----EAHRGEVVHYVMTGEKNKVYRWKVRA 520
Y+ G T EA +GE Y+++ ++ YR K++A
Sbjct: 367 KRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKA 426
Query: 521 PTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
P + +L + +M KG+ +AD II + D + +R
Sbjct: 427 PGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood tobacco
mitochondrion
Length = 394
Score = 132 bits (328), Expect = 1e-29
Identities = 107/387 (27%), Positives = 178/387 (45%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H L + GE + + HRG EK+ E + TY Q L +R+
Sbjct: 12 TLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYK-TYLQALPYFDRL 70
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y++A+ERL + E+P RA+YIR L E+ RI NHLL + A VG T
Sbjct: 71 DYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 130
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G R GGV +D+ +I ++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASRIDELE 190
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E++ + +R +G + + AK++ G R SG D R Y++LD+
Sbjct: 191 EMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLR---KAAPYDVYDQLDF 247
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV--------PVGRLPEYEE 489
+PV GD R +R++E+ +S+ I+ Q ++QMP G + R+ E
Sbjct: 248 DIPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMKTSME 307
Query: 490 AL---------GFT----------EAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
+L GF+ EA +GE ++++ N+ YR K+RAP + +L +
Sbjct: 308 SLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPCFAHLQGLD 367
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M K + +AD I + D + +R
Sbjct: 368 FMSKHHMLADVVTTIGTQDIVFGEVDR 394
>gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
>gi|6647672|sp|Q37619|NUCM_PROWI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432635|pir||T11921 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Prototheca
wickerhamii mitochondrion >gi|467853|gb|AAD12640.1|
(U02970) NADH dehydrogenase (ubiquinone), subunit 7
[Prototheca wickerhamii]
Length = 400
Score = 131 bits (326), Expect = 2e-29
Identities = 117/405 (28%), Positives = 188/405 (45%), Gaps = 34/405 (8%)
Query: 182 MAEPKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIG 241
MA KI + P T+ GP H L + GE + D HRG EK+
Sbjct: 1 MALEKI-ITAPKYKNFTINFGPQHPAAHGVLRLVLEMNGEVVQRSDPHIGLLHRGTEKLI 59
Query: 242 EGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADV--EIPDRARYIRTLLLELERIH 299
E + Y Q L +R+ + +Y++A+E+L ++ +IP RA+YIR L E+ RI
Sbjct: 60 EYK-NYLQALPYFDRLDYVSMMCQEHAYSLAVEKLLNISKDIPLRAQYIRVLFSEITRIL 118
Query: 300 NHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRK 359
NHLL V A VG T F+ + RE +M ER++G R GGV D+
Sbjct: 119 NHLLAVTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVALDLPLGLC 178
Query: 360 EEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKID 419
E+I + ++ + E++ + + +R VG++ + A ++S G R SG D
Sbjct: 179 EDIYKFSKQFASRIDEIEEMLTSNRIWKQRLVDVGVVSAEQALDWSFSGVLLRGSGIAWD 238
Query: 420 ARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV-- 477
R T+ Y+ + + +PV GD R L+R+ E+ ES+ IV Q I++M G +
Sbjct: 239 LR---KTQPYEVYDRMKFNIPVGTRGDCYDRYLIRVQEMRESLRIVMQTINEMSKGIIRL 295
Query: 478 ----MVPVGR--LPEYEEAL---------GF----------TEAHRGEVVHYVMTGEKNK 512
+ P R + + E+L GF EA +GE Y+++ +K
Sbjct: 296 DDRKITPPTRDQMKQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSK 355
Query: 513 VYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
YR K+RAP + +L + M + + +AD II + D + +R
Sbjct: 356 PYRCKIRAPGFAHLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400
>sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR
(COMPLEX I-49KD) (CI-49KD) >gi|7505618|pir||T23532
hypothetical protein K09A9.5 - Caenorhabditis elegans
>gi|3878424|emb|CAB01886.1| (Z79601) predicted using
Genefinder~Similarity to Bovine NADH-ubiquinone
oxidoreductase 49 KD subunit (SW:NUCM_BOVIN), contains
similarity to Pfam domain: PF00346 (Respiratory-chain
NADH dehydrogenase, 49 Kd subunit), Score=595.8,
E-value=6.4e-215, N=1>
Length = 482
Score = 129 bits (322), Expect = 7e-29
Identities = 106/383 (27%), Positives = 180/383 (46%), Gaps = 31/383 (8%)
Query: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
GP H L ++GE I+ HR EK+ E + TY Q L +R+ +
Sbjct: 104 GPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHK-TYTQALPYFDRLDYVS 162
Query: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
+ ++++A+E+L ++IP RA+YIRTL+ EL RI NH++ + A VG T F
Sbjct: 163 MMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFFWM 222
Query: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
+ RE + ER++G R GGV D+ ++I + E + +++
Sbjct: 223 FEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWAIKFPERIDELEDMLT 282
Query: 382 NTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPV 441
+ R +G++ A + G R SG K D R T+ AY ++++ VP+
Sbjct: 283 ENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVR---KTEPYDAYADMEFDVPI 339
Query: 442 YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR--LPEYEEAL-- 491
+GD R L R++E+ +S+ IV Q +++MP G++ +VP R + E E+L
Sbjct: 340 GTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMPAGEIKVDDHKVVPPKRAEMKENMESLIH 399
Query: 492 -------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLK 534
GF EA +GE Y++ K YR +RAP + +L A+ ++
Sbjct: 400 HFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCY 459
Query: 535 GYHVADAPLIIASIDPCYSCTER 557
+AD +I ++D + +R
Sbjct: 460 MSLIADIVAVIGTMDIVFGEVDR 482
>pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegans
>gi|470339|gb|AAC77506.1| (U00043) similar to
NADH-ubiquinone oxidoreductase [Caenorhabditis elegans]
Length = 474
Score = 124 bits (309), Expect = 2e-27
Identities = 104/383 (27%), Positives = 177/383 (46%), Gaps = 31/383 (8%)
Query: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
GP H L ++GE I+ HR EK+ E + TY Q L +R+ +
Sbjct: 96 GPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHK-TYTQALPYFDRLDYVS 154
Query: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
+ ++++AIE+L +++P RA+YIR L EL RI NH++ + A VG T F
Sbjct: 155 MMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGELTRIQNHIMGITTHALDVGAMTPFFWM 214
Query: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
+ RE + ER++G R GGV D+ ++I + + +++
Sbjct: 215 FEEREKLFEFSERVSGARMHANYVRPGGVAWDLPVGLMDDIYDWAVKFPARIDELEDMLT 274
Query: 382 NTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPV 441
+ R +G++ A + G R SG K D R T+ AY ++++ VP+
Sbjct: 275 ENRIWKARTVDIGLVSASDALNWGFSGVMVRGSGIKQDVR---KTEPYDAYADMEFDVPI 331
Query: 442 YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR--LPEYEEAL-- 491
+GD R L R++E+ +S+ IV Q +++MP G++ +VP R + E E+L
Sbjct: 332 GTKGDCYDRYLCRVEEMRQSLNIVHQCLNKMPTGEIKSDDHKVVPPKRAEMKENMESLIH 391
Query: 492 -------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLK 534
GF EA +GE Y++ K YR +RAP + +L A+ ++
Sbjct: 392 HFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCY 451
Query: 535 GYHVADAPLIIASIDPCYSCTER 557
+AD +I ++D + +R
Sbjct: 452 MSLIADIVAVIGTMDIVFGEVDR 474
>gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris]
>gi|9087303|dbj|BAA99447.1| (AP000397) NADH
dehydrogenase subunit 7 [Beta vulgaris]
Length = 391
Score = 120 bits (298), Expect = 4e-26
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 31/379 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T+ GP H + L + GE + + HRG EK+ E + TY Q L +R+
Sbjct: 9 TLNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYK-TYLQALPYFDRL 67
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +++ A+ERL + E+P RA+YIR L E+ RI NH L + A VG T
Sbjct: 68 DYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTP 127
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER+ G R GGV +D+ +I ++ +
Sbjct: 128 FLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELE 187
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E+ + +R +G + + AK++ G R G D R Y++LD+
Sbjct: 188 EMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLR---RAAPYDVYDQLDF 244
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR-------- 483
VPV GD R +R++E+ +S+ I+ Q ++QMP G + + P R
Sbjct: 245 DVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRYRMKLSME 304
Query: 484 -----LPEYEEALGF--------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
Y E EA +GE ++++ N+ YR K+RAP + +
Sbjct: 305 SSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLD 364
Query: 531 EMLKGYHVADAPLIIASID 549
M K + AD II + D
Sbjct: 365 SMSKHHMPADVVTIIGTQD 383
>sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|3282562|gb|AAC24988.1| (AF029365) NUOD
[Rhodobacter capsulatus]
Length = 413
Score = 119 bits (295), Expect = 1e-25
Identities = 116/390 (29%), Positives = 169/390 (42%), Gaps = 36/390 (9%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
+ GP H L + GE + D HRG EK+ E R TY Q +R+
Sbjct: 29 INFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESR-TYLQNTPYFDRLD 87
Query: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
+ ++ +AIE+L +P RA IR L E+ RI NHLL V A VG T
Sbjct: 88 YVAPMNQEHAWCLAIEKLTGTAVPRRASIIRVLFSEIGRILNHLLNVTTQAMDVGALTPP 147
Query: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
+ + RE +M ER G R GGV +D+ ++I + + +V +E
Sbjct: 148 LWGFEEREKLMIFYERACGARLHANYFRPGGVHQDLPPDLIDDI-EIWAKAFPQVLDDIE 206
Query: 379 VVLNTNTFIK-RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
+L N K R + I+ +++ G R SG D R Q + Y+E D+
Sbjct: 207 GLLTENRIFKQRNADICIITEAEIEKWGYSGVMVRGSGLAWDLRRAQPYE---CYDEFDF 263
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPG----GDVMVPVGRLPEYE----- 488
KV V K GD R LVRM E+ ES I+ Q ++ GD++ P
Sbjct: 264 KVAVGKNGDCYDRYLVRMAEMRESTKIILQACAKLRAPDGQGDILARGKLTPPKRAEMKT 323
Query: 489 --EAL---------GF----------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLP 527
EAL GF EA +GE Y++ NK YR K+RAP Y +L
Sbjct: 324 SMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKIRAPGYAHLQ 383
Query: 528 AVPEMLKGYHVADAPLIIASIDPCYSCTER 557
++ + KG+ +AD II ++D + +R
Sbjct: 384 SIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413
>pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum rubrum
(fragment)
Length = 188
Score = 118 bits (293), Expect = 2e-25
Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 385 TFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKE 444
+ + R G+G+L ++ ++GP AR SG D R Y+ LD+++ + +
Sbjct: 19 SIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPY---AVYDRLDFEMALGEH 75
Query: 445 GDVLARVLVRMDELFESIWIVEQVIDQMPGGDVMV-PVGRLPEYEEALGFTEAHRGEVVH 503
GDV +R +VR E SI ++ Q + MP G PV +P EA+ TEA RGE+++
Sbjct: 76 GDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPA-GEAVAKTEAPRGELIY 134
Query: 504 YVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
Y+ T ++ R K R PTY N A+ M+ G ++D PLI+ SIDPC SCTER
Sbjct: 135 YLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTER 188
>sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|805002|emb|CAA60392.1| (X86706)
NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana
sylvestris]
Length = 394
Score = 116 bits (287), Expect = 9e-25
Identities = 101/379 (26%), Positives = 166/379 (43%), Gaps = 31/379 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T GP H + L + GE + + RG EK+ E + TY Q L ++R
Sbjct: 12 TSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKLIEYK-TYLQALPYSDRS 70
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +++ A+ERL + E+P RA+YIR L E+ RI NH L + A VG T
Sbjct: 71 EYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTP 130
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G R GGV +D+ +I ++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCIDIDSFTQQFASRIDELE 190
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E+ + +R +G + + AK++ G R SG D R +++LD
Sbjct: 191 EMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLR---KAAPYDVHDQLDP 247
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR-------- 483
+PV GD R +R++E+ +S+ I+ Q ++QMP G + + P R
Sbjct: 248 DIPVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMKLSME 307
Query: 484 -----LPEYEEALGF--------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
Y E EA +GE ++++ N+ YR K+RAP + + +
Sbjct: 308 SSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFAHSQGLD 367
Query: 531 EMLKGYHVADAPLIIASID 549
M K + AD II + D
Sbjct: 368 SMSKHHMPADVVTIIGTQD 386
>emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum]
Length = 394
Score = 114 bits (283), Expect = 3e-24
Identities = 101/383 (26%), Positives = 165/383 (42%), Gaps = 31/383 (8%)
Query: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
GP H + L + GE + + HRG EK+ E + TY Q L +R+ +
Sbjct: 16 GPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYK-TYLQALPYFDRLDYVS 74
Query: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
+++ A+ERL + E+P RA+YIR L E+ RI NH L A VG T F+ A
Sbjct: 75 TMAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWA 134
Query: 322 WRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLEVVL 381
+ RE ++ ER+ G R GGV +D+ +I ++ + E+
Sbjct: 135 FEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMST 194
Query: 382 NTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPV 441
+ +R +G + + AK++ G R G D+R +++ D VPV
Sbjct: 195 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSR---RAAPYDVHDQSDLDVPV 251
Query: 442 YKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR------------ 483
GD R +R++E+ +S+ I+ Q +QMP G + + P R
Sbjct: 252 GTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIH 311
Query: 484 -LPEYEEALGF--------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLK 534
Y E EA +GE ++++ N+ YR K+RAP + + + M K
Sbjct: 312 HFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSK 371
Query: 535 GYHVADAPLIIASIDPCYSCTER 557
+ AD II + D + +R
Sbjct: 372 HHMPADVVTIIGTQDIVFGEVDR 394
>sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6851019|emb|CAA69735.3| (Y08501) NADH
dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 113 bits (280), Expect = 6e-24
Identities = 101/387 (26%), Positives = 168/387 (43%), Gaps = 31/387 (8%)
Query: 198 TVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERI 257
T GP H + L + GE + + HRG EK+ E + TY Q L ++R
Sbjct: 12 TSNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYK-TYLQALPYSDRS 70
Query: 258 CGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +++ A+E+L + E+P RA+YIR L E+ RI NH L + A VG T
Sbjct: 71 DYVSMMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTP 130
Query: 318 FMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFL 377
F+ A+ RE ++ ER++G R GGV +D+ +I ++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELE 190
Query: 378 EVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDW 437
E+ + +R +G + + AK++ G R G D+R +++ D
Sbjct: 191 EMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSR---RAAPYDVHDQSDL 247
Query: 438 KVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV------MVPVGR-------- 483
VPV GD R +R++E+ +S+ I+ Q ++QMP G + + P R
Sbjct: 248 DVPVGTRGDRYDRYCIRIEEMRQSLRIIVQCLNQMPSGMIKADDRKLCPPSRCRMKLSME 307
Query: 484 -----LPEYEEALGF--------TEAHRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVP 530
Y E EA +GE ++++ N+ YR K+RAP + +
Sbjct: 308 SSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLD 367
Query: 531 EMLKGYHVADAPLIIASIDPCYSCTER 557
M K + AD II + D + +R
Sbjct: 368 SMSKHHMPADVVTIIGTQDIVFGEVDR 394
>sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|84291|pir||S07733 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 46K chain - Paramecium
tetraurelia mitochondrion >gi|578751|emb|CAA34042.1|
(X15917) ORF400 protein (AA 1-400) [Paramecium aurelia]
>gi|1019629|gb|AAA79254.1| (M26930) ORF 400 [Paramecium
aurelia]
Length = 400
Score = 107 bits (264), Expect = 4e-22
Identities = 110/403 (27%), Positives = 173/403 (42%), Gaps = 52/403 (12%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V GP H L + GE + +D HRG EK+ E + Y Q + +R+
Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPYFDRLD 64
Query: 259 GICGYQHSVSYAMAIERLADV-EIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y +AIE L + +RT+ EL RI NH+L + A +G +
Sbjct: 65 YVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSS 124
Query: 318 FMHAWRIREPVMWLMERLTGNRKQ---YGMNIVGGVRRDILDYRKEEILRVVREIREEVK 374
A+ RE +M ER+ G R Y N V L++ ++L + E
Sbjct: 125 IFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVN------LNFLSVKLLTDILEFNNNCL 178
Query: 375 RFLEVVLNTNTFIK----RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTAT 430
L + N T+ K R +G + YK +F + G AR++G K D R+D A T
Sbjct: 179 TTLSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMD-AFDTYA 237
Query: 431 AYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM-PGGDVMVPVGRLP---- 485
Y L+++ + GD R L+RM+E+ ESI I+ Q I ++ + P L
Sbjct: 238 NYYYLNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNK 297
Query: 486 ----------EYEE-----------ALGF----------TEAHRGEVVHYVMTGEKNKVY 514
EY + GF E+ +GE +++ NK Y
Sbjct: 298 KKFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPY 357
Query: 515 RWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
R KVR+P Y++L +P+M KG+ +AD +I +ID + +R
Sbjct: 358 RCKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400
>gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia]
Length = 422
Score = 107 bits (264), Expect = 4e-22
Identities = 110/403 (27%), Positives = 173/403 (42%), Gaps = 52/403 (12%)
Query: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
V GP H L + GE + +D HRG EK+ E + Y Q + +R+
Sbjct: 28 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPYFDRLD 86
Query: 259 GICGYQHSVSYAMAIERLADV-EIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTG 317
+ +Y +AIE L + +RT+ EL RI NH+L + A +G +
Sbjct: 87 YVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSS 146
Query: 318 FMHAWRIREPVMWLMERLTGNRKQ---YGMNIVGGVRRDILDYRKEEILRVVREIREEVK 374
A+ RE +M ER+ G R Y N V L++ ++L + E
Sbjct: 147 IFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVN------LNFLSVKLLTDILEFNNNCL 200
Query: 375 RFLEVVLNTNTFIK----RAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTAT 430
L + N T+ K R +G + YK +F + G AR++G K D R+D A T
Sbjct: 201 TTLSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMD-AFDTYA 259
Query: 431 AYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM-PGGDVMVPVGRLP---- 485
Y L+++ + GD R L+RM+E+ ESI I+ Q I ++ + P L
Sbjct: 260 NYYYLNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNK 319
Query: 486 ----------EYEE-----------ALGF----------TEAHRGEVVHYVMTGEKNKVY 514
EY + GF E+ +GE +++ NK Y
Sbjct: 320 KKFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPY 379
Query: 515 RWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTER 557
R KVR+P Y++L +P+M KG+ +AD +I +ID + +R
Sbjct: 380 RCKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 422
>gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobus solfataricus]
Length = 391
Score = 106 bits (263), Expect = 6e-22
Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 22/328 (6%)
Query: 182 MAEPKIELKKP----PEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGI 237
+ E K E KP G+ GP G+ E F + GE+I+ +D Y +R I
Sbjct: 28 ITEEKCEENKPNITQTYGSFKFIYGPSAGGLLETIKFIITTNGEKILGIDAE-VYKNREI 86
Query: 238 EKIGEGRLTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELER 297
G LT + L ERI H++S+ +A+E ++E + R +ELER
Sbjct: 87 VISG---LTVDDALLRVERINAPFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELER 143
Query: 298 IHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDY 357
I NHL + + H + E V L+ ++ G+R +G+N + GV D
Sbjct: 144 IRNHLFVISRLTETTSLNVPTYHLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--- 200
Query: 358 RKEEILRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRK 417
+LR++ +I +E K+ + +L + FI R + G K+ E S+ GP ARA+G
Sbjct: 201 --GNLLRII-DITKEFKQIFDGLLESRIFIDRLQENG----KIIDENSI-GPAARAAGLA 252
Query: 418 IDARLDQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQMPGGDV 477
DAR D A Y +L ++ + +E D R LVR E+ ES I+ ++ D++ +
Sbjct: 253 YDARKD---FKALPYEDLGFRTVITQEADSFGRFLVRGMEIIESAKILVELHDEIKNSNN 309
Query: 478 MVPVGRLPEYEEALGFTEAHRGEVVHYV 505
E L E+ G++ +YV
Sbjct: 310 ERGKNHKQGGGEGLARVESPSGDLAYYV 337
>gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis]
>gi|5306140|gb|AAD41924.1|AF160864_12 (AF160864) NADH
dehydrogenase subunit 7 [Tetrahymena pyriformis]
Length = 442
Score = 83.9 bits (204), Expect = 5e-15
Identities = 81/290 (27%), Positives = 124/290 (41%), Gaps = 4/290 (1%)
Query: 185 PKIELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGR 244
P+ ++ T V GP H L + GE D HRG EK+ E R
Sbjct: 14 PRSQVNAKQIKTMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDR 73
Query: 245 LTYNQVLFLAERICGICGYQHSVSYAMAIERL-ADVEIPDRARYIRTLLLELERIHNHLL 303
Y Q + +R + +Y + IE L IRT+ EL RI NHLL
Sbjct: 74 -PYLQGMPYFDRFDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLL 132
Query: 304 WVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRD-ILDYRKEEI 362
V A VG + A+ RE +M ER+ G R V + + + E+I
Sbjct: 133 AVACHALDVGSMSSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAVSSFLLEDI 192
Query: 363 LRVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARL 422
L R + V+ + +R +G ++ ++ + G AR+ G K D RL
Sbjct: 193 LEFSRNFFTTLNEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGIKRDLRL 252
Query: 423 DQATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQM 472
+ T+T Y L+++ V + GD R L+RM+E+ ES+ IV Q I+++
Sbjct: 253 SK-TETYANYYYLNFRSYVGQHGDCYDRFLIRMNEMCESLNIVNQSINKI 301
>emb|CAA43500.1| (X61202) F420-reducing hydrogenase subunit [Methanococcus voltae]
Length = 411
Score = 76.5 bits (185), Expect = 8e-13
Identities = 82/372 (22%), Positives = 161/372 (43%), Gaps = 45/372 (12%)
Query: 235 RGIEKIGEGR-LTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLL 293
RG E + +G+ + + + RICGIC H ++ AIE EIP +R LL
Sbjct: 41 RGFETMLQGKPAAFGPIAVM--RICGICQATHGIASCEAIENAIGAEIPQDGAILRELLG 98
Query: 294 ELERIHNH----LLWVGIAAHLVGYDT----GFMHAWRIREPVMWLMERLTGNRKQYGMN 345
R+H+H LL V DT G ++R+ +++ + G
Sbjct: 99 LGNRMHSHPLHHLLIVDDLLKPEEADTLRIDGIKLIQKMRKEGQLIVDIVGGEGIHPPNL 158
Query: 346 IVGGVRRDILDYRKEEILRVVREIREEVKRFLEVV-LNTNTFIKRAEGVGI-------LP 397
++GG+R +I + K ++ +E +E+ ++ +++ + T ++ + +GI LP
Sbjct: 159 VIGGMRNNITERAKSKLYYASKEYQEDARQMYDLIKMLTERYL---DEIGIPDLGRHDLP 215
Query: 398 YKVA------KEFSVLGPTARASGRKIDARLDQATKTATAYNELDWKVPVYKEGDVLARV 451
Y ++ L A + + + + +TAT N++ + EG AR+
Sbjct: 216 YIATDTTFGNRDNLKLDDIAELTAQNYYSNYPEIAQTAT--NQIPLYLGTPAEGGPRARM 273
Query: 452 L-------------VRMDELFESIWIVEQVIDQMPGGDVMVPVGRLPEYEEA--LGFTEA 496
+ V + E++ VE+ ++ + ++ PEY++ +G EA
Sbjct: 274 VKFGSFRTDGGVMDVNLARALENLGAVERSLELLEELNIEGATKITPEYKDGFGVGVHEA 333
Query: 497 HRGEVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTE 556
R H G ++ +++ A + N+P V + ++GYH A +I+ + D SC
Sbjct: 334 PRATNTHMAEMGADGRIKNYRIIAASTWNMPVVEKAIEGYHHKYAEVIMRAYDIXASCAT 393
Query: 557 RVQIVDVRSGKV 568
+ + D ++ KV
Sbjct: 394 HIIVKDEQTKKV 405
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234831229
Number of Sequences: 2977
Number of extensions: 10608766
Number of successful extensions: 21990
Number of sequences better than 1.0e-10: 99
Number of HSP's better than 0.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 21561
Number of HSP's gapped (non-prelim): 180
length of query: 588
length of database: 189,106,746
effective HSP length: 54
effective length of query: 534
effective length of database: 156,788,448
effective search space: 83725031232
effective search space used: 83725031232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)