BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1395 (hyfH) DE:HYDROGENASE-4 COMPONENT B (EC 1.-.-.-)
(185 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1395 - Pyr... 397 e-110
sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNI... 103 1e-21
sp|P77423|HYFH_ECOLI HYDROGENASE-4 COMPONENT H >gi|7449626|pir||... 100 1e-20
emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare] 75 5e-13
sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 74 1e-12
gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea] ... 74 1e-12
emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 73 2e-12
gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum] ... 73 3e-12
gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi... 72 4e-12
gi|11466851 18kDa protein related to a subunit of NADH dehydrogh... 72 5e-12
gi|11467259 NADH dehydrogenase subunit [Zea mays] >gi|1171861|sp... 72 5e-12
gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NU... 71 9e-12
sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 71 9e-12
emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120] 71 9e-12
pir||A71019 probable NADH-plastoquinone oxidoreductase subunit -... 70 2e-11
sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 69 3e-11
gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephr... 69 3e-11
>pir||D75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1395 - Pyrococcus abyssi
(strain Orsay) >gi|5458890|emb|CAB50377.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 185
Score = 397 bits (1008), Expect = e-110
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MVEVLPYTEKLKLWRRPEESKKRIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVN 60
MVEVLPYTEKLKLWRRPEESKKRIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVN
Sbjct: 1 MVEVLPYTEKLKLWRRPEESKKRIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVN 60
Query: 61 ACPPDALIMEWDKENGVKRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVE 120
ACPPDALIMEWDKENGVKRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVE
Sbjct: 61 ACPPDALIMEWDKENGVKRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVE 120
Query: 121 VVEHRLAKCERCGNYLDFTERQIEYMLKILPDGIFDKEGIRRRAYLCKECRMRETVEEVK 180
VVEHRLAKCERCGNYLDFTERQIEYMLKILPDGIFDKEGIRRRAYLCKECRMRETVEEVK
Sbjct: 121 VVEHRLAKCERCGNYLDFTERQIEYMLKILPDGIFDKEGIRRRAYLCKECRMRETVEEVK 180
Query: 181 KGELR 185
KGELR
Sbjct: 181 KGELR 185
>sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNIT 6) (HYDROGENASE-3
COMPONENT F) >gi|78776|pir||S08624 hydrogenase (EC
1.18.99.1) 3 chain 6 - Escherichia coli
>gi|41685|emb|CAA35551.1| (X17506) hycF [Escherichia
coli] >gi|882613|gb|AAA69230.1| (U29579) formate
hydrogenlyase subunit 6 [Escherichia coli]
>gi|1789075|gb|AAC75762.1| (AE000356) probable
iron-sulfur protein of hydrogenase 3 (part of FHL
complex) [Escherichia coli K12]
>gi|1093499|prf||2104213F hycF gene [Escherichia coli]
Length = 180
Score = 103 bits (255), Expect = 1e-21
Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Query: 27 TTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKRLTFNAAR 86
T+ YP + +RG P +P+ CIGC ACVNACP +AL +E D G FN
Sbjct: 15 TSSYPLEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGH 74
Query: 87 CIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVEVVEHRLAKCERCGNYLDFTERQIEYM 146
CI C RC EVCPT A++ + +E+A KED ++ L C C N +++I+Y
Sbjct: 75 CIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVC-NRPFAVQKEIDYA 133
Query: 147 LKILP-DGIFDKEGIRRRAYLCKECRMRETVEEVKKGEL 184
+ +L +G E R C EC+ ++ + + EL
Sbjct: 134 IALLKHNGDSRAENHRESFETCPECKRQKCLVPSDRIEL 172
>sp|P77423|HYFH_ECOLI HYDROGENASE-4 COMPONENT H >gi|7449626|pir||G65024 hypothetical
protein b2488 - Escherichia coli (strain K-12)
>gi|1616957|gb|AAB88570.1| (M63654) HyfH [Escherichia
coli] >gi|1788833|gb|AAC75541.1| (AE000335) hydrogenase
4 Fe-S subunit [Escherichia coli K12]
>gi|1805547|dbj|BAA16376.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 6 (FHL SUBUNIT 6). [Escherichia
coli]
Length = 181
Score = 100 bits (247), Expect = 1e-20
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 27 TTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKRLTFNAAR 86
T YPF +E P +RG P + P CI CGAC ACP +AL ++ D + + R
Sbjct: 15 TVKYPFAPLEVSPGFRGKPDLMPSQCIACGACACACPANALTIQTDDQQNSRTWQLYLGR 74
Query: 87 CIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVEVVEHRLAKCERCGNYLDFTERQIEYM 146
CI C RC EVCPT A+Q T FE+ +K DL L +C RC ++ I
Sbjct: 75 CIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCERPF-APQKTIALA 133
Query: 147 LKIL---PDGIFDKEGIRRRAYLCKECRMRETV 176
++L + ++E + +A +C EC+ R T+
Sbjct: 134 AELLAQQQNAPQNREMLWAQASVCPECKQRATL 166
>emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]
Length = 180
Score = 75.3 bits (182), Expect = 5e-13
Identities = 34/101 (33%), Positives = 53/101 (51%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+P+T YP+ + P +RG H + + CI C CV CP D +++W E +KR
Sbjct: 35 RLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRFEKDIKRKQL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 95 LNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHEL 135
>sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|82627|pir||S00636 iron-sulfur protein frxB - wheat
chloroplast >gi|12342|emb|CAA29900.1| (X06720) frxB gene
product (AA 1-176) [Triticum aestivum]
Length = 176
Score = 74.1 bits (179), Expect = 1e-12
Identities = 33/101 (32%), Positives = 53/101 (51%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+P+T YP+ + P +RG H + + CI C CV CP D +++W E +K+
Sbjct: 37 RLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVGVCPIDLPVVDWRFEKDIKKKQL 96
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 97 LNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHEL 137
>gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea]
>gi|7636166|emb|CAB88788.1| (AJ400848) NADH
dehydrogenase 18kD subunit [Spinacia oleracea]
Length = 170
Score = 74.1 bits (179), Expect = 1e-12
Identities = 33/101 (32%), Positives = 54/101 (52%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+PVT YP+ ++ +RG H + + CI C CV ACP D +++W E +++
Sbjct: 35 RLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDIRKKRL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 95 LNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135
>emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit I [Oenothera
elata subsp. hookeri]
Length = 165
Score = 73.4 bits (177), Expect = 2e-12
Identities = 33/101 (32%), Positives = 53/101 (51%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+PVT YP+ ++ +RG H + + CI C CV CP D +++W E GV++
Sbjct: 35 RLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETGVRKKRL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++ + +L
Sbjct: 95 LNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHEL 135
>gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
>gi|120539|sp|P06252|NUIC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65733|pir||FENTB ferredoxin 2[4Fe-4S] frxB - common
tobacco chloroplast >gi|100289|pir||S11956 iron-sulfur
protein frxB - tobacco chloroplast
>gi|1223671|emb|CAA77397.1| (Z00044) NADH dehydrogenase
18kD subunit [Nicotiana tabacum]
>gi|225259|prf||1211235CU ORF 167 [Nicotiana tabacum]
Length = 167
Score = 72.6 bits (175), Expect = 3e-12
Identities = 32/101 (31%), Positives = 53/101 (51%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+PVT YP+ ++ +RG H + + CI C CV CP D +++W E +++
Sbjct: 35 RLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 95 LNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135
>gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana]
>gi|6685681|sp|P56755|NUIC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I >gi|5881750|dbj|BAA84441.1|
(AP000423) NADH dehydrogenase subunit [Arabidopsis
thaliana]
Length = 172
Score = 72.2 bits (174), Expect = 4e-12
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+PVT YP+ ++ +RG H + + CI C CV CP D +++W E +++
Sbjct: 35 RLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETNIRKKRL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E +T + +L
Sbjct: 95 LNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHEL 135
>gi|11466851 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
sativa] >gi|120537|sp|P12099|NUIC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65735|pir||FERZB ferredoxin 2[4Fe-4S] frxB
- rice chloroplast >gi|12054|emb|CAA33909.1| (X15901)
18kDa protein related to a subunit of NADH
dehydroghenase [Oryza sativa] >gi|226675|prf||1603356DC
NADH dehydrogenase-like 18kD protein [Oryza sativa]
Length = 178
Score = 71.8 bits (173), Expect = 5e-12
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+P+T YP+ + +RG H + + CI C CV CP D +++W E +KR
Sbjct: 33 RLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQL 92
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 93 LNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 133
>gi|11467259 NADH dehydrogenase subunit [Zea mays]
>gi|1171861|sp|P46722|NUIC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|1363565|pir||S58619 ferredoxin 2[4Fe-4S] ndhI -
maize chloroplast >gi|902288|emb|CAA60352.1| (X86563)
NADH dehydrogenase subunit [Zea mays]
Length = 180
Score = 71.8 bits (173), Expect = 5e-12
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R+P+T YP+ + +RG H + + CI C CV CP D +++W E +KR
Sbjct: 35 RLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++T + +L
Sbjct: 95 LNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135
>gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NUIC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65734|pir||FELVB ferredoxin 2[4Fe-4S] frxB
- liverwort (Marchantia polymorpha) chloroplast
>gi|11727|emb|CAA28138.1| (X04465) frxB [Marchantia
polymorpha]
Length = 183
Score = 71.0 bits (171), Expect = 9e-12
Identities = 31/101 (30%), Positives = 54/101 (52%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWD-----KENGV 77
R+P T YP+ ++ +RG H + + CI C CV CP + +++W+ K+ +
Sbjct: 35 RLPTTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWELKKTIKKKQL 94
Query: 78 KRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
K + + CI C CVE CPT + T +E++T ++ +L
Sbjct: 95 KNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHEL 135
>sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65736|pir||FEYBQI NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhI - Synechocystis sp. (strain PCC
6803) >gi|47556|emb|CAA44375.1| (X62517) NDHI
[Synechocystis sp.] >gi|1001394|dbj|BAA10884.1| (D64006)
NADH dehydrogenase subunit NdhI [Synechocystis sp.]
Length = 193
Score = 71.0 bits (171), Expect = 9e-12
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWD-----KENGV 77
R P+T YP+ ++ +RG H + + CI C CV CP + +++W+ K+ +
Sbjct: 36 RRPITVQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAVKKKEL 95
Query: 78 KRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
K + + CI C CVE CPT + T +E+A + DL
Sbjct: 96 KHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHDL 136
>emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]
Length = 194
Score = 71.0 bits (171), Expect = 9e-12
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 22 KRIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKRLT 81
+R PVT YP+ ++ +RG H + + CI C CV CP + +++W+ + K+
Sbjct: 34 RRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWEFDKATKKKK 93
Query: 82 FN-----AARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
N CI C CVE CPT + T +E+AT + +L
Sbjct: 94 LNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHEL 135
>pir||A71019 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257870|dbj|BAA30553.1| (AP000006) 206aa
long hypothetical NADH-plastoquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 206
Score = 70.2 bits (169), Expect = 2e-11
Identities = 36/103 (34%), Positives = 53/103 (50%), Gaps = 4/103 (3%)
Query: 25 PVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGV----KRL 80
PVT P ++E P+YRG +D + CIGC C CP A+ M W + NG
Sbjct: 34 PVTIKIPDEKIEPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVNGKLEKRPHP 93
Query: 81 TFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVEVVE 123
+ RC C CV+VCPTGA+ + + T KE+ +++ +
Sbjct: 94 KIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGKEEELQLFD 136
>sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|541327|pir||JQ2136 ferredoxin 2[4Fe-4S] B -
Plectonema boryanum >gi|216819|dbj|BAA00815.1| (D01014)
NADH-ubiquinone oxidoreductase 23 kDa subunit homolog
[Plectonema boryanum]
Length = 194
Score = 69.5 bits (167), Expect = 3e-11
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 22 KRIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWD--KENGVKR 79
+R P+T YP+ ++ +RG H + + CI C CV CP + +++W+ KE K+
Sbjct: 34 RRRPITVQYPYEKLILSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKETKKKK 93
Query: 80 L---TFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
L + + CI C CVE CPT + T +E++T + +L
Sbjct: 94 LNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135
>gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880800|gb|AAD54893.1|AF137379_116
(AF137379) subunit I of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 173
Score = 69.5 bits (167), Expect = 3e-11
Identities = 31/101 (30%), Positives = 52/101 (50%), Gaps = 5/101 (4%)
Query: 23 RIPVTTDYPFVEVEKPPEYRGVPHIDPELCIGCGACVNACPPDALIMEWDKENGVKR--- 79
R P+T YP+ ++ +RG H + + CI C CV CP + +++WD + VK+
Sbjct: 35 RRPITIHYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWDYQKSVKKKQL 94
Query: 80 --LTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDL 118
+ + CI C CVE CPT + T +E++ + +L
Sbjct: 95 RSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHEL 135
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.449
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77492275
Number of Sequences: 2977
Number of extensions: 3313866
Number of successful extensions: 10397
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10344
Number of HSP's gapped (non-prelim): 17
length of query: 185
length of database: 189,106,746
effective HSP length: 48
effective length of query: 137
effective length of database: 160,379,370
effective search space: 21971973690
effective search space used: 21971973690
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)