BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1396 (hyfI) DE:HYDROGENASE-4 COMPONENT I (EC 1.-.-.-).
(271 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [impo... 558 e-158
pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 157 2e-37
pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Py... 153 2e-36
emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf... 152 3e-36
sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNI... 152 4e-36
dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Esche... 138 1e-31
sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||... 138 1e-31
emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri] 132 6e-30
gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogena... 131 1e-29
pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jan... 131 1e-29
pir||T51316 probable CO-induced hydrogenase complex chain CooL [... 127 1e-28
pir||C70850 probable oxidoreductase subunit - Mycobacterium tube... 120 1e-26
gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Metha... 117 1e-25
pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jan... 109 4e-23
emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobac... 108 6e-23
pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium ... 108 6e-23
sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 106 2e-22
sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 106 2e-22
gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melano... 106 3e-22
sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 106 4e-22
gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melano... 105 5e-22
gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20... 105 7e-22
sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 105 7e-22
emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobac... 104 1e-21
sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 103 2e-21
gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrifi... 103 2e-21
pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain P... 103 2e-21
gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit ... 103 2e-21
gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit... 103 2e-21
sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 103 3e-21
gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas america... 102 3e-21
sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 102 5e-21
pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium ... 102 5e-21
gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreducta... 102 5e-21
gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobu... 101 8e-21
sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.... 101 8e-21
sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUI... 101 1e-20
pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (s... 100 2e-20
gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit... 100 2e-20
sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUI... 100 2e-20
emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquino... 99 5e-20
pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 99 7e-20
pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - N... 98 9e-20
gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit... 98 2e-19
sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 97 2e-19
emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomy... 97 3e-19
sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 ... 96 4e-19
gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina] >g... 95 8e-19
pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 ... 95 1e-18
pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus ab... 91 1e-17
pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 91 1e-17
sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 90 3e-17
pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiod... 89 4e-17
sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 86 4e-16
sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 86 5e-16
pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 86 5e-16
gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 85 7e-16
gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformi... 85 9e-16
pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 AP... 85 1e-15
sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 84 1e-15
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 84 2e-15
emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B ... 84 2e-15
gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aur... 83 3e-15
sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 83 3e-15
gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P1... 83 3e-15
pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nd... 83 3e-15
sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 83 3e-15
sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 83 3e-15
gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NAD... 83 3e-15
gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum] ... 82 6e-15
sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 82 6e-15
sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 82 6e-15
emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase sub... 82 6e-15
gi|7525037 photosystem II G protein [Arabidopsis thaliana] >gi|6... 82 6e-15
gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]... 82 6e-15
pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pse... 82 1e-14
gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NU... 81 1e-14
pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 80 2e-14
pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 80 2e-14
gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesosti... 80 2e-14
gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit... 80 3e-14
gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephros... 80 4e-14
sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >g... 79 5e-14
sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 79 6e-14
sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 79 6e-14
emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120] 79 6e-14
sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 79 6e-14
gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia] 79 6e-14
sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 78 1e-13
pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 78 1e-13
sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 78 1e-13
pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B... 77 2e-13
sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 76 4e-13
gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus ... 75 1e-12
emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfat... 75 1e-12
>pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458889|emb|CAB50376.1| (AJ248287) HYDROGENASE-4
COMPONENT I (EC 1.-.-.-). [Pyrococcus abyssi]
Length = 271
Score = 558 bits (1423), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MRKFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQ 60
MRKFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQ
Sbjct: 1 MRKFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQ 60
Query: 61 TRMAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVP 120
TRMAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVP
Sbjct: 61 TRMAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVP 120
Query: 121 VDMYIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVEFTIPERGIS 180
VDMYIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVEFTIPERGIS
Sbjct: 121 VDMYIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVEFTIPERGIS 180
Query: 181 LRLWLTLREELRRIVGYFDREAVLNEFIKLVEEAEKSENPKDKLHELVSEYVLREGDSRI 240
LRLWLTLREELRRIVGYFDREAVLNEFIKLVEEAEKSENPKDKLHELVSEYVLREGDSRI
Sbjct: 181 LRLWLTLREELRRIVGYFDREAVLNEFIKLVEEAEKSENPKDKLHELVSEYVLREGDSRI 240
Query: 241 RVAMMFLENEYWRLKDEYERRKVGLAKAKVL 271
RVAMMFLENEYWRLKDEYERRKVGLAKAKVL
Sbjct: 241 RVAMMFLENEYWRLKDEYERRKVGLAKAKVL 271
>pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257858|dbj|BAA30541.1| (AP000006) 173aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 173
Score = 157 bits (392), Expect = 2e-37
Identities = 78/160 (48%), Positives = 106/160 (65%), Gaps = 19/160 (11%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
KS WV+HV++GSCNGCDIE++ LTP YD ER G+K+V +PRHAD LL+TGP+T Q+
Sbjct: 31 KSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLER 90
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K YE P P+IV+A+G+CA G +FY S + +P ++ V+PVD++
Sbjct: 91 VKLVYE-QTPDPKIVIAVGSCATGGSVFYES--PFTNAP-----------LDNVIPVDVF 136
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEG 164
+PGCPP PE ILYG+ L K +KGE +PP EEG
Sbjct: 137 VPGCPPRPEAILYGVVLALEKLAKMLKGE----IPP-EEG 171
>pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Pyrococcus abyssi
(strain Orsay) >gi|5458148|emb|CAB49637.1| (AJ248285)
CO-induced hydrogenase related, subunit L [Pyrococcus
abyssi]
Length = 170
Score = 153 bits (383), Expect = 2e-36
Identities = 76/161 (47%), Positives = 107/161 (66%), Gaps = 19/161 (11%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S WV+HV++GSCNGCDIE++ LTP YD ER G+K+V +PRHAD LL+TGP+T Q+
Sbjct: 28 RSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLER 87
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K YE P+P+IV+AIG+C G +FY S + +P ++ V+PVD++
Sbjct: 88 VKLVYE-QTPEPKIVIAIGSCPTGGSVFYES--PFTNAP-----------LDRVIPVDVF 133
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGK 165
+PGCPP PE IL+G+ L K +KGE +PP EEG+
Sbjct: 134 VPGCPPRPEAILHGVVLALEKLAKMLKGE----VPP-EEGE 169
>emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf||2104213G hycG
gene [Escherichia coli]
Length = 255
Score = 152 bits (381), Expect = 3e-36
Identities = 90/244 (36%), Positives = 136/244 (54%), Gaps = 31/244 (12%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S +VY VD G CNGC+IE+ L+P +D ER GIKVVP+PRHAD LL TG +TR R
Sbjct: 36 RSAYVYRVDCGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+A+++ P P+I ++ G C SGGIF++ Y ++ GG + +VPVD+Y
Sbjct: 96 ALRAWQS-APDPKICISYGACGNSGGIFHDLYCVW-------------GGTDKIVPVDVY 141
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVEFTIPERGISLRLW 184
IPGCPP+P LYG A LG+ E+++ A PGE + E I + L
Sbjct: 142 IPGCPPTPAATLYGFAMALGLLEQKI-----HARGPGELDEQPAE----ILHGDMVQPLR 192
Query: 185 LTLREELRRIVGYFDREAVLNEFIKLVEEAE-------KSENPKDKLHELVSEYVLREGD 237
+ + E RR+ GY + ++++ + + E ++EN +L+E+VS +
Sbjct: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN-DPRLNEIVSHLNHVVEE 251
Query: 238 SRIR 241
+RIR
Sbjct: 252 ARIR 255
>sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNIT 7) (HYDROGENASE-3
COMPONENT G) >gi|78777|pir||S08625 hydrogenase (EC
1.18.99.1) 3 chain 7 - Escherichia coli
>gi|882612|gb|AAA69229.1| (U29579) formate hydrogenlyase
subunit 7 [Escherichia coli] >gi|1789074|gb|AAC75761.1|
(AE000356) hydrogenase activity [Escherichia coli K12]
Length = 255
Score = 152 bits (380), Expect = 4e-36
Identities = 90/244 (36%), Positives = 136/244 (54%), Gaps = 31/244 (12%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S +VY VD G CNGC+IE+ L+P +D ER GIKVVP+PRHAD LL TG +TR R
Sbjct: 36 RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+A+++ P P+I ++ G C SGGIF++ Y ++ GG + +VPVD+Y
Sbjct: 96 ALRAWQS-APDPKICISYGACGNSGGIFHDLYCVW-------------GGTDKIVPVDVY 141
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVEFTIPERGISLRLW 184
IPGCPP+P LYG A LG+ E+++ A PGE + E I + L
Sbjct: 142 IPGCPPTPAATLYGFAMALGLLEQKI-----HARGPGELDEQPAE----ILHGDMVQPLR 192
Query: 185 LTLREELRRIVGYFDREAVLNEFIKLVEEAE-------KSENPKDKLHELVSEYVLREGD 237
+ + E RR+ GY + ++++ + + E ++EN +L+E+VS +
Sbjct: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN-DPRLNEIVSHLNHVVEE 251
Query: 238 SRIR 241
+RIR
Sbjct: 252 ARIR 255
>dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Escherichia coli]
Length = 251
Score = 138 bits (343), Expect = 1e-31
Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 26/177 (14%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S +VY VD G CN C+IE+ +TP +D ER GIKVV +PRHAD LL TG +TR RM
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+AYE+ P +I V+ G C GGIF++ Y+++ GG + +VP+D++
Sbjct: 92 ALRAYESAPDH-KICVSYGACGVGGGIFHDLYSVW-------------GGSDTIVPIDVW 137
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEH------------WKALPPGEEGKAENE 169
IPGCPP+P ++G A LG+ ++++ W +PP + E E
Sbjct: 138 IPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIERE 194
>sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||H65024 psbG homolog
protein b2489 - Escherichia coli (strain K-12)
>gi|1788834|gb|AAC75542.1| (AE000335) hydrogenase 4 Fe-S
subunit [Escherichia coli K12]
>gi|2668498|gb|AAB88571.1| (M63654) HyfI [Escherichia
coli]
Length = 252
Score = 138 bits (343), Expect = 1e-31
Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 26/177 (14%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S +VY VD G CN C+IE+ +TP +D ER GIKVV +PRHAD LL TG +TR RM
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+AYE+ P +I V+ G C GGIF++ Y+++ GG + +VP+D++
Sbjct: 92 ALRAYESAPDH-KICVSYGACGVGGGIFHDLYSVW-------------GGSDTIVPIDVW 137
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEH------------WKALPPGEEGKAENE 169
IPGCPP+P ++G A LG+ ++++ W +PP + E E
Sbjct: 138 IPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIERE 194
>emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri]
Length = 156
Score = 132 bits (328), Expect = 6e-30
Identities = 62/148 (41%), Positives = 89/148 (59%), Gaps = 14/148 (9%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
KS W+ HV+ SCNGCDIEV+ LTP YD ER G+ + P+ AD +++TG + +
Sbjct: 5 KSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNV 64
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K Y + P P++V+A+G CA +GGIF++ Y + GG++ V+PVD Y
Sbjct: 65 LKNIYNQI-PDPKVVLAVGACASTGGIFHDCYNVI-------------GGVDQVIPVDAY 110
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKG 152
+PGC P PE IL G+ L I E + KG
Sbjct: 111 VPGCCPRPEAILDGVVAALSILENKKKG 138
>gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogenase subunit CooL
(cooL) [Methanococcus jannaschii]
Length = 148
Score = 131 bits (325), Expect = 1e-29
Identities = 67/153 (43%), Positives = 95/153 (61%), Gaps = 19/153 (12%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S+ V V+ G CNGCDIE++ L P YD+E+ GI V NPR AD LL+TGP+T Q
Sbjct: 9 RSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAER 68
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K+ YE P+P+IVVA+G CA SGGIF + + GG++ V+PVD
Sbjct: 69 LKEIYE-KTPEPKIVVAVGACALSGGIFKEGHVV--------------GGVDKVIPVDAK 113
Query: 125 IPGCPPSPEEILYGLAQL----LGIKEKRMKGE 153
IPGCPP P EI+ + ++ + ++EKR+K +
Sbjct: 114 IPGCPPRPSEIIETILKVAPKAIAMREKRLKNK 146
>pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
Length = 153
Score = 131 bits (325), Expect = 1e-29
Identities = 67/153 (43%), Positives = 95/153 (61%), Gaps = 19/153 (12%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S+ V V+ G CNGCDIE++ L P YD+E+ GI V NPR AD LL+TGP+T Q
Sbjct: 14 RSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAER 73
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K+ YE P+P+IVVA+G CA SGGIF + + GG++ V+PVD
Sbjct: 74 LKEIYE-KTPEPKIVVAVGACALSGGIFKEGHVV--------------GGVDKVIPVDAK 118
Query: 125 IPGCPPSPEEILYGLAQL----LGIKEKRMKGE 153
IPGCPP P EI+ + ++ + ++EKR+K +
Sbjct: 119 IPGCPPRPSEIIETILKVAPKAIAMREKRLKNK 151
>pir||T51316 probable CO-induced hydrogenase complex chain CooL [imported] -
Rhodospirillum rubrum >gi|1515468|gb|AAC45118.1|
(U65510) CooL [Rhodospirillum rubrum]
Length = 142
Score = 127 bits (316), Expect = 1e-28
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 15/142 (10%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLT-PYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
KS W+Y ++AGSCNGCD+E+ P YD+ERLG + +P+HAD +L+TGPLT + +
Sbjct: 10 KSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVKD 69
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
+ + YE + P P++ VAIG C SGG+F SY++ G I+ +PVD+
Sbjct: 70 KVLRVYEEI-PDPKVTVAIGVCPISGGVFRESYSIV-------------GPIDRYLPVDV 115
Query: 124 YIPGCPPSPEEILYGLAQLLGI 145
+PGCPP P+ I+ G+A+ + I
Sbjct: 116 NVPGCPPRPQAIIEGIAKAIEI 137
>pir||C70850 probable oxidoreductase subunit - Mycobacterium tuberculosis
(strain H37RV) >gi|2808739|emb|CAA16263.1| (AL021428)
hypothetical protein Rv0082 [Mycobacterium tuberculosis]
Length = 159
Score = 120 bits (299), Expect = 1e-26
Identities = 59/139 (42%), Positives = 84/139 (59%), Gaps = 14/139 (10%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SL + HVDAGSCNGC++E+ P YD ER G ++V +P+HADALL+TG +T +
Sbjct: 34 SLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPL 93
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
+K EA P+PR+V+A G CA + G+F ++Y + G + VVPVD+ I
Sbjct: 94 RKTLEA-TPRPRVVIACGDCALNRGVFADAYGVV-------------GAVGEVVPVDVEI 139
Query: 126 PGCPPSPEEILYGLAQLLG 144
GCPP+P I+ L + G
Sbjct: 140 AGCPPTPAAIMAALRSVTG 158
>gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Methanococcus
maripaludis]
Length = 147
Score = 117 bits (291), Expect = 1e-25
Identities = 58/140 (41%), Positives = 89/140 (63%), Gaps = 8/140 (5%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLD-VLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
K++ V V G CNGCDIEV++ VL+P+YD E+ + + NPR AD L++TG +T+
Sbjct: 9 KNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSA 68
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
++KK Y+ + P+P+ VVA G CA GG+ YN N + G G +E ++PVD+
Sbjct: 69 SLKKIYDEI-PEPKAVVAAGACALMGGV-YN-----NIGADLGTSTFIDGPVENIIPVDI 121
Query: 124 YIPGCPPSPEEILYGLAQLL 143
+PGCPP PE+++ G+ + L
Sbjct: 122 KVPGCPPRPEDVITGIVKAL 141
>pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
>gi|1592007|gb|AAB99371.1| (U67576) formate
hydrogenlyase, subunit 7 [Methanococcus jannaschii]
Length = 151
Score = 109 bits (270), Expect = 4e-23
Identities = 53/140 (37%), Positives = 86/140 (60%), Gaps = 8/140 (5%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLD-VLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
K + V V G CN CDIEV++ + +P+YD E+ + + NPR AD L++TG +T+
Sbjct: 12 KCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAE 71
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
+++K YE + P+P+ VVA+G CA GG++ N + G +G +E ++PVD+
Sbjct: 72 SLRKIYEKI-PEPKAVVAVGACALMGGVY------KNIGGDLGTSDFVAGPVENIIPVDV 124
Query: 124 YIPGCPPSPEEILYGLAQLL 143
+PGC P PE+I+ G+ + L
Sbjct: 125 KVPGCAPRPEDIIAGIVKAL 144
>emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 108 bits (268), Expect = 6e-23
Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 13/131 (9%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
S+ V V+ G CNGCDIEVL +L+P YDLE+ GI V NPR AD +L+TG +T Q R +
Sbjct: 13 SIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKL 72
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
++ Y + P+P+IVVA+G C SG +F + E G + +PVD+ +
Sbjct: 73 QRIY-SKAPEPKIVVALGNCPISGDVF---------NQEGGS---VYAPVSDFIPVDVEV 119
Query: 126 PGCPPSPEEIL 136
PGCPP P EIL
Sbjct: 120 PGCPPRPFEIL 130
>pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621459|gb|AAB84903.1| (AE000824) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 108 bits (268), Expect = 6e-23
Identities = 59/131 (45%), Positives = 78/131 (59%), Gaps = 13/131 (9%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
S+ V V+ G CNGCDIEVL +L+P YDLE+ GI V NPR AD +L+TG +T Q R +
Sbjct: 13 SIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKL 72
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
++ Y P+P+IVVA+G C SG +F + E G + +PVD +
Sbjct: 73 QRIYR-KAPEPKIVVALGNCPISGDVF---------NQEGGS---VYAPVSDFIPVDAEV 119
Query: 126 PGCPPSPEEIL 136
PGCPP P EIL
Sbjct: 120 PGCPPRPSEIL 130
>sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|629601|pir||S48826 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - wild cabbage >gi|562282|emb|CAA57725.1|
(X82274) PSST subunit of NADH: ubiquinone oxidoreductase
[Brassica oleracea]
Length = 215
Score = 106 bits (263), Expect = 2e-22
Identities = 54/136 (39%), Positives = 82/136 (59%), Gaps = 14/136 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ MP +PR V
Sbjct: 91 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP-EPRWV 149
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 150 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 196
Query: 140 AQLLGIKEKRMKGEHW 155
QL +R HW
Sbjct: 197 LQLQKKINRRKDFLHW 212
>sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|1084345|pir||S52286 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - Arabidopsis thaliana
>gi|643090|emb|CAA58887.1| (X84078) NADH dehydrogenase
[Arabidopsis thaliana] >gi|7573391|emb|CAB87695.1|
(AL163814) NADH dehydrogenase (ubiquinone) [Arabidopsis
thaliana]
Length = 218
Score = 106 bits (263), Expect = 2e-22
Identities = 54/136 (39%), Positives = 82/136 (59%), Gaps = 14/136 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ MP +PR V
Sbjct: 94 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP-EPRWV 152
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 153 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 199
Query: 140 AQLLGIKEKRMKGEHW 155
QL +R HW
Sbjct: 200 LQLQKKINRRKDFLHW 215
>gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melanogaster]
Length = 221
Score = 106 bits (262), Expect = 3e-22
Identities = 52/132 (39%), Positives = 84/132 (63%), Gaps = 15/132 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD++R G+ +PR AD +++ G LT + A++K Y+ M P+PR V
Sbjct: 97 CAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM-PEPRWV 155
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR ++PVD+Y+PGCPP+ E ++YG+
Sbjct: 156 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IIPVDIYVPGCPPTAEALMYGV 202
Query: 140 AQLLGIKEKRMK 151
QL K KRMK
Sbjct: 203 LQLQK-KVKRMK 213
>sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT) >gi|108826|pir||S22371
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
- bovine >gi|599691|emb|CAA46154.1| (X65020) PSST
subunit of the NADH: ubiquinone oxidoreductase complex
[Bos taurus]
Length = 216
Score = 106 bits (261), Expect = 4e-22
Identities = 52/134 (38%), Positives = 85/134 (62%), Gaps = 18/134 (13%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD++R G+ +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 92 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 150
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
V++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 151 VSMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGI 197
Query: 140 AQLLGIKEKRMKGE 153
QL +K++K E
Sbjct: 198 LQL----QKKIKRE 207
>gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melanogaster]
Length = 212
Score = 105 bits (260), Expect = 5e-22
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 15/132 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD++R G+ +PR AD L++ G LT + A +K Y+ M P+PR V
Sbjct: 88 CAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAGTLTNKMAPAFRKIYDQM-PEPRWV 146
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YG+
Sbjct: 147 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALMYGI 193
Query: 140 AQLLGIKEKRMK 151
QL K KRM+
Sbjct: 194 LQLQK-KVKRMR 204
>gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20KD; PSST SUBUNIT
[Homo sapiens]
Length = 158
Score = 105 bits (259), Expect = 7e-22
Identities = 50/123 (40%), Positives = 79/123 (63%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD++R G+ +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 34 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 92
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
V++G+CA GG ++ SY++ RG DR +VPVD+YIPGCPP+ E +LYG+
Sbjct: 93 VSMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYIPGCPPTAEALLYGI 139
Query: 140 AQL 142
QL
Sbjct: 140 LQL 142
>sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT)
Length = 213
Score = 105 bits (259), Expect = 7e-22
Identities = 50/123 (40%), Positives = 79/123 (63%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD++R G+ +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 147
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
V++G+CA GG ++ SY++ RG DR +VPVD+YIPGCPP+ E +LYG+
Sbjct: 148 VSMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYIPGCPPTAEALLYGI 194
Query: 140 AQL 142
QL
Sbjct: 195 LQL 197
>emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 104 bits (257), Expect = 1e-21
Identities = 54/133 (40%), Positives = 80/133 (59%), Gaps = 9/133 (6%)
Query: 12 VDAGSCNGCDIEVLD-VLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYE 70
V G CNGCDIE+++ VL+P YD E+ I + NPR AD L++TGP+T+Q +K+ Y
Sbjct: 17 VYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEGPLKEIYN 76
Query: 71 AMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPP 130
A+ P+P+ V+A G CA GG++ N ++ P G ++ V+PVD +PGC
Sbjct: 77 AI-PEPKAVIAAGACALMGGVYKN---IHGDIPSEE----ICGPVDKVIPVDAKVPGCAV 128
Query: 131 SPEEILYGLAQLL 143
PE++L G L
Sbjct: 129 RPEDVLAGAVAAL 141
>sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|281482|pir||E42573 psbG homolog
protein - Paracoccus denitrificans
Length = 173
Score = 103 bits (255), Expect = 2e-21
Identities = 50/123 (40%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ P YDLER G +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 54 CAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQM-PEPRYV 112
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 113 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGI 159
Query: 140 AQL 142
QL
Sbjct: 160 LQL 162
>gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 174
Score = 103 bits (255), Expect = 2e-21
Identities = 50/123 (40%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ P YDLER G +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 54 CAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQM-PEPRYV 112
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 113 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGI 159
Query: 140 AQL 142
QL
Sbjct: 160 LQL 162
>pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor
[imported] - yellow lupine >gi|6007781|gb|AAF01037.1|
(AF185271) NADH ubiquinone oxidoreductase PSST subunit
[Lupinus luteus]
Length = 213
Score = 103 bits (255), Expect = 2e-21
Identities = 51/123 (41%), Positives = 78/123 (62%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 89 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM-PEPRWV 147
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 148 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 194
Query: 140 AQL 142
QL
Sbjct: 195 LQL 197
>gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
Length = 158
Score = 103 bits (255), Expect = 2e-21
Identities = 52/123 (42%), Positives = 78/123 (63%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 34 CAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRWV 92
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
V++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 93 VSMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 139
Query: 140 AQL 142
QL
Sbjct: 140 LQL 142
>gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 192
Score = 103 bits (255), Expect = 2e-21
Identities = 51/123 (41%), Positives = 78/123 (62%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 68 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM-PEPRWV 126
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 127 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 173
Query: 140 AQL 142
QL
Sbjct: 174 LQL 176
>sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|3282560|gb|AAC24986.1| (AF029365) NUOB
[Rhodobacter capsulatus]
Length = 177
Score = 103 bits (254), Expect = 3e-21
Identities = 49/123 (39%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ P YD+ER G +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 57 CAVEMMHTAMPRYDVERYGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 115
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPPS E ++YG+
Sbjct: 116 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPSAEALMYGI 162
Query: 140 AQL 142
QL
Sbjct: 163 LQL 165
>gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas americana]
>gi|6647649|sp|O21272|NUKM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 20 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 10) >gi|7443157|pir||S78166 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 10 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258365|gb|AAD11899.1| (AF007261) NADH
dehydrogenase, subunit 10 [Reclinomonas americana]
Length = 182
Score = 102 bits (253), Expect = 3e-21
Identities = 53/136 (38%), Positives = 82/136 (59%), Gaps = 14/136 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ M +PR V
Sbjct: 58 CAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMS-EPRWV 116
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
V++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 117 VSMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 163
Query: 140 AQLLGIKEKRMKGEHW 155
QL ++ K +W
Sbjct: 164 LQLQKKIKRSRKTLYW 179
>sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|7443153|pir||T07603 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 22K chain -
potato >gi|1235607|emb|CAA65451.1| (X96671)
NADH-ubiquinone oxidoreductase [Solanum tuberosum]
Length = 213
Score = 102 bits (252), Expect = 5e-21
Identities = 50/123 (40%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R GI P+PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 89 CAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRWV 147
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SYA+ RG DR +VPVD+Y+PGCPP+ E +LYG+
Sbjct: 148 ISMGSCANGGGYYHYSYAVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGI 194
Query: 140 AQL 142
QL
Sbjct: 195 LQL 197
>pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622351|gb|AAB85728.1| (AE000891) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 102 bits (252), Expect = 5e-21
Identities = 53/133 (39%), Positives = 78/133 (57%), Gaps = 9/133 (6%)
Query: 12 VDAGSCNGCDIEVLD-VLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYE 70
V G CNGCDIE+++ V +P YD E+ I + NPR AD L++TGP+T+Q +K Y
Sbjct: 17 VYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEEPLKAIYN 76
Query: 71 AMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPP 130
A+ P+P+ V+A G CA GG++ N ++ P G ++ V+PVD +PGC
Sbjct: 77 AI-PEPKAVIAAGACALMGGVYKN---IHGDIPSEE----ICGPVDKVIPVDAKVPGCAV 128
Query: 131 SPEEILYGLAQLL 143
PE++L G L
Sbjct: 129 RPEDVLAGAVAAL 141
>gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 210
Score = 102 bits (252), Expect = 5e-21
Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 86 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM-PEPRWV 144
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY + RG DR +VPVD+Y+PGCPP+ E +LYGL
Sbjct: 145 ISMGSCANGGGYYHYSYYVV-----RGCDR--------IVPVDIYVPGCPPTAEALLYGL 191
Query: 140 AQL 142
QL
Sbjct: 192 LQL 194
>gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus]
Length = 201
Score = 101 bits (250), Expect = 8e-21
Identities = 54/140 (38%), Positives = 80/140 (56%), Gaps = 22/140 (15%)
Query: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
+S ++Y +D+G+C GC++E+ + +P YD+ R I PRHADAL++ G +T + +
Sbjct: 83 RSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEV 142
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+KKAYEAM P+P++V+ +G CA SGGI L E VV
Sbjct: 143 LKKAYEAM-PEPKVVILLGACAISGGIIGEGVPL-----------------EAVVE---- 180
Query: 125 IPGCPPSPEEILYGLAQLLG 144
IPGCPP+P IL L ++ G
Sbjct: 181 IPGCPPNPFTILEALMKVKG 200
>sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.3 KDA SUBUNIT PRECURSOR
(COMPLEX I-19.3KD) (CI-19.3KD)
>gi|2764632|emb|CAA04802.1| (AJ001520) 19.3kD
iron-sulfur subunit of mitochondrial complex I
[Neurospora crassa]
Length = 226
Score = 101 bits (250), Expect = 8e-21
Identities = 49/123 (39%), Positives = 79/123 (63%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + TP YD +RLGI +PR +D +++ G LT + A+++ Y+ M P PR V
Sbjct: 102 CAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQM-PDPRWV 160
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YG+
Sbjct: 161 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDIYVPGCPPTSEALMYGI 207
Query: 140 AQL 142
QL
Sbjct: 208 FQL 210
>sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 2) >gi|5650745|emb|CAB51630.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 167
Score = 101 bits (248), Expect = 1e-20
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 18/142 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE++ YDL+R G+ P+PR +D ++I G +TR+ +++ Y+ M P+PR V
Sbjct: 39 CAIEMISAGCARYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQM-PEPRWV 97
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+A+GTCA SGG+ YN+YA+ G E VPVD+++PGCPP PE +++G
Sbjct: 98 IAMGTCAISGGV-YNTYAVVQ-------------GSETFVPVDVHVPGCPPRPEALMHG- 142
Query: 140 AQLLGIKEKRMKGEHWKALPPG 161
L ++EK K P G
Sbjct: 143 --FLLLQEKIKKSRALTGTPLG 162
>pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (strain MSB8)
>gi|4981767|gb|AAD36289.1|AE001778_10 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 178
Score = 100 bits (247), Expect = 2e-20
Identities = 62/169 (36%), Positives = 87/169 (50%), Gaps = 24/169 (14%)
Query: 5 KSLWVYHVDAGSCNGCD-IEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
+S+W+ H C GC +E+ +T +D+ER GI + PR AD LLITG L +T
Sbjct: 17 RSIWMLHY----CTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLR 72
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
+ YE M P P+ VV G+C +GGI+++SYA N ++ +PVD+
Sbjct: 73 RVIYTYEQM-PDPKYVVGFGSCTINGGIYFDSYATVNR-------------LDYYIPVDV 118
Query: 124 YIPGCPPSPEEILYGLAQLLGIKEKRMKGE--HWKALPPGEEGKAENEV 170
YI GC P PE IL L+ EK KGE WK E +N++
Sbjct: 119 YIAGCMPRPEAILEAFNYLM---EKIRKGEADGWKRYRENYEWYKQNQI 164
>gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit NuoB
[Sinorhizobium meliloti]
Length = 165
Score = 100 bits (246), Expect = 2e-20
Identities = 49/123 (39%), Positives = 76/123 (60%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD ER G +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 45 CAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 103
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR VVPVD+Y+PGCPP+ E +LYG+
Sbjct: 104 ISMGSCANGGGYYHYSYSVV-----RGCDR--------VVPVDIYVPGCPPTAEALLYGV 150
Query: 140 AQL 142
L
Sbjct: 151 LLL 153
>sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 1) >gi|5650735|emb|CAB51621.1| (AJ245398) nuoB1
[Sinorhizobium meliloti]
Length = 192
Score = 100 bits (246), Expect = 2e-20
Identities = 49/123 (39%), Positives = 76/123 (60%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ + P YD ER G +PR +D +++ G LT + A++K Y+ M P+PR V
Sbjct: 72 CAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM-PEPRYV 130
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR VVPVD+Y+PGCPP+ E +LYG+
Sbjct: 131 ISMGSCANGGGYYHYSYSVV-----RGCDR--------VVPVDIYVPGCPPTAEALLYGV 177
Query: 140 AQL 142
L
Sbjct: 178 LLL 180
>emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquinone Oxidoreductase
(Complex I) [Yarrowia lipolytica]
Length = 210
Score = 99.1 bits (243), Expect = 5e-20
Identities = 48/123 (39%), Positives = 78/123 (63%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ V P YD +RLGI +PR +D +++ G LT + +++ Y+ M P+PR V
Sbjct: 86 CAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQM-PEPRWV 144
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YG+
Sbjct: 145 ISMGSCANGGGYYHFSYSVV-----RGCDR--------IVPVDVYVPGCPPTSEALMYGV 191
Query: 140 AQL 142
QL
Sbjct: 192 FQL 194
>pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B NMA0018
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378796|emb|CAB83338.1| (AL162752) NADH
dehydrogenase I chain B [Neisseria meningitidis Z2491]
Length = 160
Score = 98.7 bits (242), Expect = 7e-20
Identities = 49/123 (39%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR AD +++ G LT + A+++ Y+ + +PR V
Sbjct: 38 CAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMASALRRVYDQLA-EPRWV 96
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR VVPVD+Y+PGCPP+ E ++YGL
Sbjct: 97 LSMGSCANGGGYYHYSYSVV-----RGADR--------VVPVDVYVPGCPPTAEALIYGL 143
Query: 140 AQL 142
QL
Sbjct: 144 IQL 146
>pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225464|gb|AAF40696.1| (AE002381) NADH dehydrogenase
I, B subunit [Neisseria meningitidis MC58]
Length = 160
Score = 98.3 bits (241), Expect = 9e-20
Identities = 49/123 (39%), Positives = 77/123 (61%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P+PR AD +++ G LT + A+++ Y+ + +PR V
Sbjct: 38 CAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLA-EPRWV 96
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR VVPVD+Y+PGCPP+ E ++YGL
Sbjct: 97 LSMGSCANGGGYYHYSYSVV-----RGADR--------VVPVDVYVPGCPPTAEALIYGL 143
Query: 140 AQL 142
QL
Sbjct: 144 IQL 146
>gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei]
Length = 184
Score = 97.5 bits (239), Expect = 2e-19
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 18/151 (11%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SLW G C +E++ +YD +R GI +PRHAD ++I+G +T++ A+
Sbjct: 51 SLWFMTQPMGCCG---VEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPAL 107
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
K+ ++ M P P+ V+A+G CA SGG FY SY+ I+ + P+D+YI
Sbjct: 108 KRLWDQM-PAPKWVIAMGDCAISGGPFYESYSTVQ-------------NIDEIFPIDVYI 153
Query: 126 PGCPPSPEEILYGLAQLL-GIKEKRMKGEHW 155
PGCPP PE ++ G +L IK ++ +G +
Sbjct: 154 PGCPPRPEALIQGFVELQEKIKARKDRGTEY 184
>sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443155|pir||F71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B RP356 - Rickettsia
prowazekii >gi|3860916|emb|CAA14816.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
Length = 174
Score = 97.1 bits (238), Expect = 2e-19
Identities = 46/123 (37%), Positives = 77/123 (62%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD++R G+ P+PR +D +++ G LT + A++K Y+ M +P+ V
Sbjct: 48 CAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMT-EPKWV 106
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YGL
Sbjct: 107 LSMGSCANGGGYYHFSYSVV-----RGCDR--------IVPVDVYVPGCPPTAEALIYGL 153
Query: 140 AQL 142
QL
Sbjct: 154 MQL 156
>emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 232
Score = 96.7 bits (237), Expect = 3e-19
Identities = 51/155 (32%), Positives = 85/155 (53%), Gaps = 18/155 (11%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLG-IKVVPNPRHADALLITGPLTRQTRMA 64
SLWV++ C IE + +D RLG I P PR AD ++++G +T + A
Sbjct: 42 SLWVFNFGLACCA---IEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPA 98
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
+K+ YE MP +P+ V++ G C+ GG +++SY++ + G++ ++PVD+Y
Sbjct: 99 VKRLYEQMP-EPKYVISFGACSNCGGPYWDSYSV-------------TKGVDQIIPVDVY 144
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALP 159
+PGCPP PE +L G+ +L + GE + P
Sbjct: 145 VPGCPPRPEALLQGILKLQEKIARESLGERYGVSP 179
>sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR
(COMPLEX I-20KD) (CI-20KD) >gi|7509195|pir||T26329
hypothetical protein W10D5.2 - Caenorhabditis elegans
>gi|3880584|emb|CAB02132.1| (Z79758) Similarity to
Bovine NADH-ubiquinone oxidoreductase 20 KD subunit
(SW:NUKM_BOVIN), contains similarity to Pfam domain:
PF01058 (NADH ubiquinone oxidoreductase, 20 Kd subunit),
Score=224.4, E-value=5.4e-64, N=1~cDNA EST yk98a6.3
comes from this>
Length = 199
Score = 96.0 bits (235), Expect = 4e-19
Identities = 45/136 (33%), Positives = 82/136 (60%), Gaps = 14/136 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ P YD++R G+ +PR AD + + G +T + A+++ Y+ MP + + V
Sbjct: 75 CAVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMP-EAKWV 133
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ +Y++ RG DR V+PVD+Y+PGCPP+ E +LYG+
Sbjct: 134 ISMGSCANGGGYYHYAYSVL-----RGCDR--------VIPVDIYVPGCPPTAEALLYGV 180
Query: 140 AQLLGIKEKRMKGEHW 155
QL +++ + + W
Sbjct: 181 LQLQKKIKRKREAQLW 196
>gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina]
>gi|10444179|gb|AAG17753.1|AF288090_29 (AF288090) NADH
dehydrogenase subunit 10 [Rhodomonas salina]
Length = 158
Score = 95.2 bits (233), Expect = 8e-19
Identities = 44/123 (35%), Positives = 74/123 (59%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R GI +PR +D +++ G LT + A++K Y+ MP +PR V
Sbjct: 34 CAVEMMHAGASRYDFDRFGIIFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMP-EPRWV 92
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ G + +VPVD+++PGCPP+ E +LYG+
Sbjct: 93 ISMGSCANGGGYYHFSYSVVR-------------GCDKIVPVDVFVPGCPPTAEALLYGI 139
Query: 140 AQL 142
QL
Sbjct: 140 LQL 142
>pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105129|gb|AAF83117.1|AE003884_2 (AE003884)
NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella
fastidiosa]
Length = 191
Score = 94.8 bits (232), Expect = 1e-18
Identities = 46/123 (37%), Positives = 75/123 (60%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ DL+R GI P+PR +D +++ G L + A++K Y+ MP P+ V
Sbjct: 71 CAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD-PKWV 129
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ RG DR +VPVD+Y+PGCPP+ E ++YG+
Sbjct: 130 ISMGSCANGGGYYHYSYSVV-----RGCDR--------IVPVDVYVPGCPPTAEALVYGI 176
Query: 140 AQL 142
QL
Sbjct: 177 LQL 179
>pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus abyssi (strain
Orsay) >gi|5458137|emb|CAB49626.1| (AJ248285) NADH
dehydrogenase I, subunit B [Pyrococcus abyssi]
Length = 195
Score = 91.3 bits (223), Expect = 1e-17
Identities = 57/168 (33%), Positives = 88/168 (51%), Gaps = 20/168 (11%)
Query: 5 KSLWVYHVDAGSCNGCD-IEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
KSLW+ C GC IE+ ++T YD+ER G+ P+PR D LITG +T +T
Sbjct: 20 KSLWI----VSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLK 75
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
I YE + P P+ V+A G+C +GGI+++SY ++ +PVD+
Sbjct: 76 RIIITYE-LSPDPKYVLAHGSCPLNGGIYWDSYNAIK-------------HLDKYIPVDV 121
Query: 124 YIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVE 171
+I GC P PE +L G+ +L+ + E + + WK E +N+ E
Sbjct: 122 FIAGCMPRPEAVLDGIYKLMEMIENG-EADGWKRYKENYEWYRKNQDE 168
>pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257873|dbj|BAA30556.1| (AP000006) 195aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 195
Score = 90.9 bits (222), Expect = 1e-17
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 5 KSLWVYHVDAGSCNGCD-IEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
KSLW+ C GC IE+ ++T YD+ER G+ P+PR D LITG +T +T
Sbjct: 20 KSLWI----VAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYVTPKTLK 75
Query: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
I YE + P P+ V+A G+C +GG++++S YNT ++ +PVD+
Sbjct: 76 RIIITYE-LSPDPKYVLAHGSCPINGGVYWDS---YNTVKH----------LDKYIPVDV 121
Query: 124 YIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVE 171
+I GC P PE ++ G+ +L+ + E + + W+ E +N+ E
Sbjct: 122 FIAGCMPRPEAVMDGIYKLMDMIESG-EADGWRRYKENYEWYKKNQDE 168
>sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|7443162|pir||T11899 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Thermus aquaticus thermophilus
>gi|1279862|gb|AAA97939.1| (U52917) NADH dehydrogenase
I, subunit NQO6 [Thermus thermophilus]
Length = 181
Score = 89.7 bits (219), Expect = 3e-17
Identities = 51/146 (34%), Positives = 84/146 (56%), Gaps = 24/146 (16%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ DL R G +V +PR AD +++ G L+++ +++ +E MP P+
Sbjct: 46 CAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPD-PKW 104
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
V+++G CA SGG+F N+YA+ ++ VVPVD+Y+PGCPP PE ++Y
Sbjct: 105 VISMGACASSGGMF-NNYAIVQN-------------VDSVVPVDVYVPGCPPRPEALIYA 150
Query: 139 LAQLLGIKEKRMKG----EHWKALPP 160
+ QL +K+++G E + LPP
Sbjct: 151 VMQL----QKKVRGQAYNERGERLPP 172
>pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiodurans (strain
R1) >gi|6459265|gb|AAF11070.1|AE001994_6 (AE001994) NADH
dehydrogenase I, B subunit [Deinococcus radiodurans]
Length = 181
Score = 89.3 bits (218), Expect = 4e-17
Identities = 47/140 (33%), Positives = 82/140 (58%), Gaps = 20/140 (14%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ D+ R G +V +PR AD +++ G L+++ +++ Y+ MP P+
Sbjct: 46 CAIEMMSSTNARNDMSRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPD-PKW 104
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
V+++G CA SGG+F N+YA+ ++ VVPVD+++PGCPP PE ++Y
Sbjct: 105 VISMGACASSGGMF-NNYAVVQN-------------VDSVVPVDIFVPGCPPRPEALIYA 150
Query: 139 LAQLLGIKEKRMKGEHWKAL 158
+ QL +K+++GE + L
Sbjct: 151 VMQL----QKKVRGEAFDQL 166
>sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443158|pir||C70413 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoB - Aquifex
aeolicus >gi|2983736|gb|AAC07297.1| (AE000734) NADH
dehydrogenase I chain B [Aquifex aeolicus]
Length = 179
Score = 86.2 bits (210), Expect = 4e-16
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 15/123 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE++ +DL+RLG+ +PR AD L++ G + + +K ++ MP P+
Sbjct: 36 CAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPD-PKWC 94
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G CA +GG F Y+T G++ ++PVD+YIPGCPP+P+ ++YG+
Sbjct: 95 ISMGGCASAGGPF----PTYSTLQ----------GVDRIIPVDVYIPGCPPTPQGLIYGI 140
Query: 140 AQL 142
QL
Sbjct: 141 LQL 143
>sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443159|pir||C70647 probable nuoB protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781222|emb|CAB06270.1| (Z83867) nuoB [Mycobacterium
tuberculosis]
Length = 184
Score = 85.8 bits (209), Expect = 5e-16
Identities = 48/143 (33%), Positives = 81/143 (56%), Gaps = 24/143 (16%)
Query: 20 CDIEVLDVLTPYYDLERLGI-KVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ P +D+ R G+ + PR AD +++ G ++++ +++ Y+ M +P+
Sbjct: 38 CAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQIYDQMA-EPKW 96
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
V+A+G CA SGG+F N+YA+ G++ VVPVD+Y+PGCPP PE +L+
Sbjct: 97 VLAMGVCASSGGMF-NNYAIVQ-------------GVDHVVPVDIYLPGCPPRPEMLLHA 142
Query: 139 LAQL--------LGIKEKRMKGE 153
+ +L LGI +R E
Sbjct: 143 ILKLHEKIQQMPLGINRERAIAE 165
>pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoB -
Streptomyces coelicolor >gi|5042276|emb|CAB44530.1|
(AL078618) nuo, NADH dehydrogenase subunit [Streptomyces
coelicolor]
Length = 184
Score = 85.8 bits (209), Expect = 5e-16
Identities = 44/124 (35%), Positives = 75/124 (60%), Gaps = 16/124 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVP-NPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ YDL R G++V +PR AD +++ G ++++ +++ Y+ MP P+
Sbjct: 38 CAIEMMTTGAGRYDLARFGMEVFRGSPRQADLMIVAGRVSQKMAPVLRQVYDQMP-NPKW 96
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
V+++G CA SGG+F N+YA+ G++ VVPVD+Y+PGCPP PE ++
Sbjct: 97 VISMGVCASSGGMF-NNYAIVQ-------------GVDHVVPVDIYLPGCPPRPEMLMDA 142
Query: 139 LAQL 142
+ +L
Sbjct: 143 ILKL 146
>gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG1 [Halobacterium
sp. NRC-1]
Length = 235
Score = 85.4 bits (208), Expect = 7e-16
Identities = 47/135 (34%), Positives = 75/135 (54%), Gaps = 18/135 (13%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ + +DL+R V +PR AD +++ G + + +K+ Y+ MP +P+
Sbjct: 73 CSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMP-EPKF 131
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
VV +G C+ SGG F Y + G E V+PVD++IPGCPP PE ++YG
Sbjct: 132 VVNMGNCSTSGGPFQEGYNVVK-------------GAEEVIPVDIHIPGCPPRPEALVYG 178
Query: 139 LAQLLGIKEKRMKGE 153
+A+L +E+ GE
Sbjct: 179 VAKL---QERIANGE 190
>gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
>gi|5306137|gb|AAD41921.1|AF160864_9 (AF160864) NADH
dehydrogenase subunit 10 [Tetrahymena pyriformis]
Length = 162
Score = 85.0 bits (207), Expect = 9e-16
Identities = 39/123 (31%), Positives = 68/123 (54%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R G+ PR AD +L+ G LT + +++ YE P+ V
Sbjct: 32 CAVEMMHATVSRYDFDRFGVIFRATPRQADLILVAGTLTNKMAPGLRRLYE-QTLDPKWV 90
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SY++ G ++PVD+Y+PGCPP+ E +++G+
Sbjct: 91 LSMGSCANGGGYYHYSYSVVR-------------GCNRIIPVDIYVPGCPPTAEALMFGV 137
Query: 140 AQL 142
QL
Sbjct: 138 LQL 140
>pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 APE1428 -
Aeropyrum pernix (strain K1) >gi|5105111|dbj|BAA80425.1|
(AP000061) 202aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 10 [Aeropyrum pernix]
Length = 202
Score = 84.7 bits (206), Expect = 1e-15
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SLW H+ SC C E P D E+ G PR + ++I G +T++ A+
Sbjct: 45 SLWPVHLTT-SC--CSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTVTKKMACAV 101
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
+ +E MP P+ +A+G CA GG+FYNSY + V+P+D+YI
Sbjct: 102 RLTWEQMP-HPKFAIAMGACALDGGLFYNSYNIVKPW--------------QVLPIDIYI 146
Query: 126 PGCPPSPEEILYGLAQL 142
PGCPP PE + + +L
Sbjct: 147 PGCPPRPEGVARAIVEL 163
>sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG
>gi|79727|pir||S04437 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhK - Synechocystis sp. (strain PCC
6803) >gi|48047|emb|CAA35485.1| (X17439) PSII-G protein
(AA 1 - 248) [Synechocystis PCC6803]
>gi|1653370|dbj|BAA18284.1| (D90913) NADH-ubiquinone
oxidoreductase subunit PsbG [Synechocystis sp.]
Length = 248
Score = 84.3 bits (205), Expect = 1e-15
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
K SLW + +C C IE ++ +D +R G+ +PR AD ++ G +T +
Sbjct: 49 KLSSLWPL-LYGTAC--CFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMA 105
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
A+ + YE MP +P+ V+A+G C +GG+F + +T+ RG D+L +PVD
Sbjct: 106 PALVRLYEEMP-EPKYVIAMGACTITGGMFSSD----STTAVRGVDKL--------IPVD 152
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+YIPGCPP PE I + +L
Sbjct: 153 VYIPGCPPRPEAIFDAIIKL 172
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7483897|pir||D69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa
subunit homolog - Archaeoglobus fulgidus
>gi|2648716|gb|AAB89421.1| (AE000976) F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 353
Score = 83.9 bits (204), Expect = 2e-15
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 18/137 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SLW H+ C E+ YD ER+G R + +++ G +TR+ +
Sbjct: 27 SLWPVHLVTACCGA---ELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRKMAKVL 83
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
+ +E MP P+ V+ +G C GGIF+N Y + S VVPVD +I
Sbjct: 84 RITWEQMPD-PKFVIVMGACGLQGGIFWNGYHMVKPSD--------------VVPVDFFI 128
Query: 126 PGCPPSPEEILYGLAQL 142
PGCPP+PE +L G+ QL
Sbjct: 129 PGCPPTPEALLRGIRQL 145
>emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B [Thermoplasma
acidophilum]
Length = 149
Score = 83.9 bits (204), Expect = 2e-15
Identities = 43/135 (31%), Positives = 76/135 (55%), Gaps = 19/135 (14%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPN-PRHADALLITGPLTRQTRMAIKKAYEAMPPKPRI 78
C IE++ + D+ R G ++ N PR +D ++++G +T++ +++ Y+ MP P+
Sbjct: 30 CAIEMMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMP-YPKY 88
Query: 79 VVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYG 138
V+A G C GG + Y++ G++ VVPVD+YIPGCPP+PE + G
Sbjct: 89 VIAQGVCVIQGGPYNQGYSVVL-------------GVDRVVPVDVYIPGCPPTPEALTNG 135
Query: 139 LAQLLGIKEKRMKGE 153
+ L +K+++GE
Sbjct: 136 IILL----QKKIRGE 146
>gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aurelia]
Length = 156
Score = 83.5 bits (203), Expect = 3e-15
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R G+ PR AD +++ G +T + A+++ Y+ P+ V
Sbjct: 34 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYD-QTADPKWV 92
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SYA+ G + ++PVD+++PGCPP+ E + +G+
Sbjct: 93 LSMGSCANGGGYYHYSYAVVK-------------GCDKIIPVDIFVPGCPPTAEALFFGV 139
Query: 140 AQL 142
QL
Sbjct: 140 LQL 142
>sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443163|pir||T09637
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- yellow lupine chloroplast >gi|881443|gb|AAB86906.1|
(U27654) NADH-ubiquinone oxidoreductase subunit [Lupinus
luteus]
Length = 226
Score = 83.5 bits (203), Expect = 3e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 30 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+AIG C +GG+F + S RG D+L +PVD
Sbjct: 87 PSLVRLYEQMP-EPKYVIAIGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 133
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 134 VYLPGCPPKPEAVIDAITKL 153
>gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P12159|NUKC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72688|pir||F2RZG psbG protein - rice chloroplast
>gi|11988|emb|CAA34000.1| (X15901) psbG; PSII G protein
[Oryza sativa] >gi|226609|prf||1603356AF photosystem II
G protein [Oryza sativa]
Length = 246
Score = 83.1 bits (202), Expect = 3e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 51 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 107
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 108 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 154
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ L +L
Sbjct: 155 VYLPGCPPKPEAVIDALTKL 174
>pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - maize
chloroplast >gi|12427|emb|CAA35482.1| (X17438) PSII-G
protein (AA 1 - 248) [Zea mays]
>gi|552735|gb|AAA84484.1| (M12704) PSII-G [Zea mays]
Length = 248
Score = 83.1 bits (202), Expect = 3e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 51 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 107
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 108 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 154
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ L +L
Sbjct: 155 VYLPGCPPKPEAVIDALTKL 174
>sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG 2
>gi|72691|pir||F2YBG2 hypothetical ndhK homolog -
Synechocystis sp. (strain PCC 6803)
>gi|48068|emb|CAA35236.1| (X17359) put. psbG2 product
(AA 1-219) [Synechocystis PCC6803]
Length = 219
Score = 83.1 bits (202), Expect = 3e-15
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E + P +DLER G PR AD ++ G +T + A+ + YE +P +P+ V
Sbjct: 54 CFMEFMAAFGPRFDLERFGSIPRATPRQADLMITAGTITMKYAPALVQLYEQIP-EPKYV 112
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+A+G C + G+F SP R G++ ++PVD+YIPGCPP PE ++ G+
Sbjct: 113 IAMGACTITAGMFSAD------SPTAVR------GVDKLIPVDVYIPGCPPRPEAVIDGI 160
Query: 140 AQLLGIKEKRMKGE 153
+L K++ GE
Sbjct: 161 IKL----RKKVAGE 170
>sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|100799|pir||S09666
psbG protein - wheat chloroplast
>gi|556460|gb|AAA84731.1| (J04954) thylakoid membrane
protein [Triticum aestivum]
Length = 245
Score = 83.1 bits (202), Expect = 3e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 50 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 106
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 107 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 153
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ L +L
Sbjct: 154 VYLPGCPPKPEAVIDALTKL 173
>gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|902226|emb|CAA60290.1|
(X86563) ndhK [Zea mays]
Length = 248
Score = 83.1 bits (202), Expect = 3e-15
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 51 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 107
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 108 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 154
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ L +L
Sbjct: 155 VYLPGCPPKPEAVIDALTKL 174
>gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
>gi|11837|emb|CAA77357.1| (Z00044) NADH dehydrogenase
27kD subunit [Nicotiana tabacum]
>gi|225205|prf||1211235AK bhpB gene [Nicotiana tabacum]
Length = 284
Score = 82.3 bits (200), Expect = 6e-15
Identities = 47/140 (33%), Positives = 76/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 89 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 145
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 146 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 192
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 193 VYLPGCPPKPEAVIDAITKL 212
>sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|72687|pir||F2NTG
psbG protein - common tobacco chloroplast
Length = 247
Score = 82.3 bits (200), Expect = 6e-15
Identities = 47/140 (33%), Positives = 76/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 52 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 108
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 109 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 155
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 156 VYLPGCPPKPEAVIDAITKL 175
>sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|162168|gb|AAA30217.1| (L00585)
NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
Length = 202
Score = 82.3 bits (200), Expect = 6e-15
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YDL+R GI P PR A+ ++++G +T + ++ Y M P+ V
Sbjct: 78 CAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQM-VNPKWV 136
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SYA+ G E +PVD +IPGCPPS E +++ L
Sbjct: 137 ISMGSCANGGGYYHFSYAVLR-------------GCERAIPVDFWIPGCPPSAESLVFCL 183
Query: 140 AQL 142
L
Sbjct: 184 HTL 186
>emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum
sativum]
Length = 227
Score = 82.3 bits (200), Expect = 6e-15
Identities = 47/140 (33%), Positives = 76/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 30 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 87 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 133
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 134 VYLPGCPPKPEAVIDAITKL 153
>gi|7525037 photosystem II G protein [Arabidopsis thaliana]
>gi|6685682|sp|P56756|NUKC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|5881698|dbj|BAA84389.1|
(AP000423) photosystem II G protein [Arabidopsis
thaliana]
Length = 225
Score = 82.3 bits (200), Expect = 6e-15
Identities = 47/140 (33%), Positives = 76/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 30 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMA 86
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 87 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 133
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 134 VYLPGCPPKPEAVIDAITKL 153
>gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
>gi|7636113|emb|CAB88733.1| (AJ400848) NADH
dehydrogenase 32kDa subunit [Spinacia oleracea]
Length = 281
Score = 82.3 bits (200), Expect = 6e-15
Identities = 47/140 (33%), Positives = 76/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 84 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMKMA 140
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 141 PSLLRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 187
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE ++ + +L
Sbjct: 188 VYLPGCPPKPEAVIDAITKL 207
>pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948706|gb|AAG06026.1|AE004692_5 (AE004692) NADH
dehydrogenase I chain B [Pseudomonas aeruginosa]
Length = 225
Score = 81.5 bits (198), Expect = 1e-14
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 28/178 (15%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
SLW Y+ SC C +E+ T +D+ R G +V+ +PR AD ++I G +
Sbjct: 58 SLWPYNFGL-SC--CYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPV 114
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ YE M +P+ V+++G+CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 115 IQRLYEQML-EPKWVISMGSCANSGGM-YDIYSVVQ-------------GVDKFLPVDVY 159
Query: 125 IPGCPPSPEEILYGLAQL---LGIKEKRM------KGEHWKALPPGEEGKAENEVEFT 173
IPGCPP PE L GL L +G + + + +G + +P ++ K E ++ T
Sbjct: 160 IPGCPPRPEAFLQGLMLLQESIGQERRPLSWVVGDQGVYRAEMPAQKDLKREQRIQVT 217
>gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NUKC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72690|pir||F2LVG psbG protein - liverwort
(Marchantia polymorpha) chloroplast
>gi|11676|emb|CAA28088.1| (X04465) psbG [Marchantia
polymorpha]
Length = 243
Score = 81.1 bits (197), Expect = 1e-14
Identities = 45/141 (31%), Positives = 76/141 (52%), Gaps = 18/141 (12%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD ++ G +T +
Sbjct: 52 RLSSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMA 108
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFY-NSYALYNTSPERGRDRLRSGGIEMVVPV 121
++ + YE MP +P+ V+A+G C +GG+F +SY G++ ++PV
Sbjct: 109 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTDSYTTVR-------------GVDKLIPV 154
Query: 122 DMYIPGCPPSPEEILYGLAQL 142
D+Y+PGCPP PE I+ + +L
Sbjct: 155 DIYLPGCPPKPEAIIDAIIKL 175
>pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain 26695)
>gi|2314428|gb|AAD08307.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori
26695]
Length = 159
Score = 80.4 bits (195), Expect = 2e-14
Identities = 43/123 (34%), Positives = 70/123 (55%), Gaps = 15/123 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE++ +D +R G +PR +D ++I G LT++ +++ Y+ MP +P+ V
Sbjct: 33 CAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLTKKHAEFMRRLYDQMP-EPKWV 91
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA +GG+F N+YA G + VVPVD+Y+PGC P PE + Y L
Sbjct: 92 ISMGSCANTGGMF-NTYATVQ-------------GADRVVPVDIYLPGCAPRPETLQYAL 137
Query: 140 AQL 142
L
Sbjct: 138 MVL 140
>pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain J99)
>gi|4155792|gb|AAD06768.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 80.4 bits (195), Expect = 2e-14
Identities = 43/123 (34%), Positives = 70/123 (55%), Gaps = 15/123 (12%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE++ +D +R G +PR +D ++I G LT++ +++ Y+ MP +P+ V
Sbjct: 33 CAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLTKKHAEFMRRLYDQMP-EPKWV 91
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA +GG+F N+YA G + VVPVD+Y+PGC P PE + Y L
Sbjct: 92 ISMGSCANTGGMF-NTYATVQ-------------GADRVVPVDIYLPGCAPRPETLQYAL 137
Query: 140 AQL 142
L
Sbjct: 138 MVL 140
>gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
>gi|7259539|gb|AAF43840.1|AF166114_52 (AF166114) subunit
K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
Length = 247
Score = 80.4 bits (195), Expect = 2e-14
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE +L +D +R G+ +PR AD ++ G +T +
Sbjct: 51 RLSSLWPL-LYGTSC--CFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMA 107
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 108 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 154
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE I+ + +L
Sbjct: 155 VYLPGCPPKPEAIIDAVIKL 174
>gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
Length = 224
Score = 80.0 bits (194), Expect = 3e-14
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 19/138 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
SLW Y+ SC C +E+ T +D+ R G +V+ +PR AD ++I G +
Sbjct: 57 SLWPYNFGL-SC--CYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPI 113
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ YE M +P+ V+++G+CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 114 IQRLYEQML-EPKWVISMGSCANSGGM-YDIYSVVQ-------------GVDKFLPVDVY 158
Query: 125 IPGCPPSPEEILYGLAQL 142
+PGCPP PE L GL L
Sbjct: 159 VPGCPPRPEAFLQGLMLL 176
>gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
>gi|5880743|gb|AAD54836.1|AF137379_59 (AF137379) subunit
K of NADH-ubiquinone oxidoreductase [Nephroselmis
olivacea]
Length = 237
Score = 79.6 bits (193), Expect = 4e-14
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD ++ G +T +
Sbjct: 42 RLSSLWPL-LYGTSC--CFIEFACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMA 98
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 99 PSLVRLYEQMPD-PKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 145
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCPP PE I+ + +L
Sbjct: 146 VYLPGCPPKPEAIIDAVIKL 165
>sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >gi|282904|pir||S27978
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- soybean chloroplast (fragment)
>gi|11304|emb|CAA45612.1| (X64329) ndhK [Glycine max]
Length = 224
Score = 79.2 bits (192), Expect = 5e-14
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 3 KFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTR 62
+ SLW + SC C IE ++ +D +R G+ +PR AD +L G +T +
Sbjct: 27 RLPSLWPL-LYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTVGTVTMKMA 83
Query: 63 MAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVD 122
++ + YE MP +P+ V+A+G C +GG+F + S RG D+L +PVD
Sbjct: 84 PSLVRLYEQMP-EPKYVIAMGACTITGGMFSTD----SYSTVRGVDKL--------IPVD 130
Query: 123 MYIPGCPPSPEEILYGLAQL 142
+Y+PGCP PE I+ + +L
Sbjct: 131 VYLPGCPTKPEAIIDAITKL 150
>sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT >gi|72692|pir||F2PPG
psbG protein - Paramecium tetraurelia mitochondrion
>gi|578753|emb|CAA34045.1| (X15917) psbG protein (AA
1-156) [Paramecium aurelia]
Length = 156
Score = 78.8 bits (191), Expect = 6e-14
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R G+ PR AD +++ G +T + A+++ Y+ P+ V
Sbjct: 34 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYD-QTADPKWV 92
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SYA+ G + ++PVDM P CPP+ E + +G+
Sbjct: 93 LSMGSCANGGGYYHYSYAVVK-------------GCDKIIPVDMLCPRCPPTAEALFFGV 139
Query: 140 AQL 142
QL
Sbjct: 140 LQL 142
>sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443152|pir||S74216
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- Anabaena sp. (PCC 7120) >gi|1173548|gb|AAC44353.1|
(U31208) NADH dehydrogenase type 1 subunit [Anabaena
sp.]
Length = 245
Score = 78.8 bits (191), Expect = 6e-14
Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 13/123 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE ++ +D +R G+ +PR AD ++ G +T + + + YE MP +P+ V
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMP-EPKYV 117
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+A+G C +GG+F ++ + + RG D+L +PVD+Y+PGCPP PE I+ +
Sbjct: 118 IAMGACTITGGMF----SVESPTAVRGVDKL--------IPVDVYLPGCPPRPEAIIDAM 165
Query: 140 AQL 142
+L
Sbjct: 166 IKL 168
>emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120]
Length = 245
Score = 78.8 bits (191), Expect = 6e-14
Identities = 41/123 (33%), Positives = 68/123 (54%), Gaps = 13/123 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE ++ +D +R G+ +PR AD ++ G +T + + + YE MP +P+ V
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMP-EPKYV 117
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+A+G C +GG+F SP R G++ ++PVD+Y+PGCPP PE I+ +
Sbjct: 118 IAMGACTITGGMFSVD------SPTAVR------GVDKLIPVDVYLPGCPPRPEAIIDAM 165
Query: 140 AQL 142
+L
Sbjct: 166 IKL 168
>sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K (NDH-K)
>gi|5139342|emb|CAB45647.1| (AJ012181) NDH-K protein
[Anabaena variabilis]
Length = 245
Score = 78.8 bits (191), Expect = 6e-14
Identities = 41/123 (33%), Positives = 68/123 (54%), Gaps = 13/123 (10%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE ++ +D +R G+ +PR AD ++ G +T + + + YE MP +P+ V
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMP-EPKYV 117
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+A+G C +GG+F SP R G++ ++PVD+Y+PGCPP PE I+ +
Sbjct: 118 IAMGACTITGGMFSVD------SPTAVR------GVDKLIPVDVYLPGCPPRPEAIIDAI 165
Query: 140 AQL 142
+L
Sbjct: 166 IKL 168
>gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia]
Length = 154
Score = 78.8 bits (191), Expect = 6e-14
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 14/123 (11%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C +E++ YD +R G+ PR AD +++ G +T + A+++ Y+ P+ V
Sbjct: 32 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYD-QTADPKWV 90
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA GG ++ SYA+ G + ++PVDM P CPP+ E + +G+
Sbjct: 91 LSMGSCANGGGYYHYSYAVVK-------------GCDKIIPVDMLCPRCPPTAEALFFGV 137
Query: 140 AQL 142
QL
Sbjct: 138 LQL 140
>sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|3273736|gb|AAC38641.1| (AF057063) NADH
dehydrogenase chain B [Pectobacterium carotovorum subsp.
carotovorum]
Length = 224
Score = 78.0 bits (189), Expect = 1e-13
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
SLW Y+ SC C +E++ T +D+ R G +V+ +PR AD +++ G +
Sbjct: 57 SLWPYNFGL-SC--CYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPV 113
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ YE M +P+ V+++G CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 114 IQRLYEQML-EPKWVISMGACANSGGM-YDIYSVVQ-------------GVDKFLPVDVY 158
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEG 164
IPGCPP PE + L L K + W GE+G
Sbjct: 159 IPGCPPRPEAYMQALLLLKESIGKERRPLSWVV---GEQG 195
>pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B Cj1578c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968995|emb|CAB73566.1| (AL139079) NADH
dehydrogenase I chain B [Campylobacter jejuni]
Length = 167
Score = 77.6 bits (188), Expect = 1e-13
Identities = 41/134 (30%), Positives = 74/134 (54%), Gaps = 19/134 (14%)
Query: 20 CDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAIKKAYEAMPPKPRIV 79
C IE++ YD +R G +PRH++ ++I G L ++ ++ Y+ MP P+ V
Sbjct: 41 CAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPD-PKWV 99
Query: 80 VAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYIPGCPPSPEEILYGL 139
+++G+CA +GG+F N+Y+ G++ ++PVD+Y+PGC P PE + L
Sbjct: 100 ISMGSCANTGGMF-NTYSTVQ-------------GVDRIIPVDIYVPGCAPRPESFQFAL 145
Query: 140 AQLLGIKEKRMKGE 153
I +K+++ E
Sbjct: 146 M----ILQKKIRKE 155
>sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|10038838|dbj|BAB12873.1| (AP001118) NADH
dehydrogenase I chain B [Buchnera sp. APS]
Length = 224
Score = 77.6 bits (188), Expect = 1e-13
Identities = 51/160 (31%), Positives = 84/160 (51%), Gaps = 22/160 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
SLW Y+ SC C +E++ T +D+ R G +V+ +PR AD ++I G +
Sbjct: 57 SLWPYNFGL-SC--CYVEMVSAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPV 113
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ Y+ M +P+ V+++G CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 114 IQRLYDQML-EPKWVISMGACANSGGM-YDIYSVVQ-------------GVDKFLPVDIY 158
Query: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEG 164
IPGCPP PE + L L + + + W GE+G
Sbjct: 159 IPGCPPRPEAYMQALILLQKLINEERRPLSWVI---GEQG 195
>pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B - Escherichia
coli >gi|397899|emb|CAA48361.1| (X68301) NADH
dehydrogenase I, subunit nuoB [Escherichia coli]
Length = 220
Score = 77.3 bits (187), Expect = 2e-13
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 19/138 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
S+W Y+ SC C +E++ + T +D+ R G +V+ +PR AD +++ G +
Sbjct: 53 SIWPYNFGL-SC--CYVEMVTLFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPV 109
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ Y+ M +P+ V+++G CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 110 IQRLYDQML-EPKWVISMGACANSGGM-YDIYSVVQ-------------GVDKFIPVDVY 154
Query: 125 IPGCPPSPEEILYGLAQL 142
IPGCPP PE + L L
Sbjct: 155 IPGCPPRPEAYMQALMLL 172
>sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|7428919|pir||E65000 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B - Escherichia coli
>gi|1788624|gb|AAC75347.1| (AE000318) NADH dehydrogenase
I chain B [Escherichia coli K12]
Length = 220
Score = 76.1 bits (184), Expect = 4e-13
Identities = 45/138 (32%), Positives = 76/138 (54%), Gaps = 19/138 (13%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVV-PNPRHADALLITGPLTRQTRMA 64
S+W Y+ SC C +E++ T +D+ R G +V+ +PR AD +++ G +
Sbjct: 53 SIWPYNFGL-SC--CYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPV 109
Query: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
I++ Y+ M +P+ V+++G CA SGG+ Y+ Y++ G++ +PVD+Y
Sbjct: 110 IQRLYDQML-EPKWVISMGACANSGGM-YDIYSVVQ-------------GVDKFIPVDVY 154
Query: 125 IPGCPPSPEEILYGLAQL 142
IPGCPP PE + L L
Sbjct: 155 IPGCPPRPEAYMQALMLL 172
>gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus]
Length = 170
Score = 74.9 bits (181), Expect = 1e-12
Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 17/137 (12%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SLW H SC C E +D ER G+ + R ++ L++ G L+R+ A
Sbjct: 39 SLWPPHFTT-SC--CGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTLSRKMGRAA 95
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
+ Y+ MP +P+ V+A+G C GGIF+NSY S ++ +PVD+Y+
Sbjct: 96 RIVYDQMP-EPKYVIALGACILEGGIFWNSYNTVLPS-------------DIGIPVDLYV 141
Query: 126 PGCPPSPEEILYGLAQL 142
PGCP PE + + L
Sbjct: 142 PGCPIRPEAVARAVLML 158
>emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 170
Score = 74.9 bits (181), Expect = 1e-12
Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 17/137 (12%)
Query: 6 SLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMAI 65
SLW H SC C E +D ER G+ + R ++ L++ G L+R+ A
Sbjct: 39 SLWPPHFTT-SC--CGTEFGAFAAARFDAERYGMLPFSSARQSNILILEGTLSRKMGRAA 95
Query: 66 KKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMYI 125
+ Y+ MP +P+ V+A+G C GGIF+NSY S ++ +PVD+Y+
Sbjct: 96 RIVYDQMP-EPKYVIALGACILEGGIFWNSYNTVLPS-------------DIGIPVDLYV 141
Query: 126 PGCPPSPEEILYGLAQL 142
PGCP PE + + L
Sbjct: 142 PGCPIRPEAVARAVLML 158
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109261773
Number of Sequences: 2977
Number of extensions: 4801801
Number of successful extensions: 13206
Number of sequences better than 1.0e-10: 95
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 13004
Number of HSP's gapped (non-prelim): 95
length of query: 271
length of database: 189,106,746
effective HSP length: 53
effective length of query: 218
effective length of database: 157,386,935
effective search space: 34310351830
effective search space used: 34310351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)