BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1399 (PAB1399) DE:Hypothetical protein
         (239 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (st...   462  e-129
pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii ...    99  4e-20
pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st...    93  3e-18
pir||G72280 conserved hypothetical protein - Thermotoga maritima...    84  1e-15

>pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (strain Orsay)
           >gi|5458887|emb|CAB50374.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score =  462 bits (1177), Expect = e-129
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY 60
           MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY
Sbjct: 1   MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY 60

Query: 61  RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA 120
           RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA
Sbjct: 61  RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA 120

Query: 121 LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI 180
           LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI
Sbjct: 121 LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI 180

Query: 181 PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA 239
           PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA
Sbjct: 181 PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA 239


>pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii
           >gi|3257878|dbj|BAA30561.1| (AP000006) 241aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 241
           
 Score = 99.1 bits (243), Expect = 4e-20
 Identities = 71/239 (29%), Positives = 125/239 (51%), Gaps = 7/239 (2%)

Query: 1   MKRFIPLIIMLIAIISLAY-YVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWD 59
           +KR + +I++LI    +A     +P   +   +GK+YL++         +   VT+++ +
Sbjct: 8   LKRLLSIILILIIGYWIAQGLANVPFGEDRMLVGKYYLQHV---KEQTGAVNAVTAVVVN 64

Query: 60  YRGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASI 119
           YRG DTL E +V F+A  G  AL   +RRER  K++G +L++   +K++   I+     I
Sbjct: 65  YRGFDTLGEVTVLFIASTGVAALLWRKRRERTAKTEG-SLVLTTGSKLLFPFIMLFGMYI 123

Query: 120 ALHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVAL 179
            +HGHLTPGGGF GG+ +A   LL+  A+  Y +   G + T  L   S  L+G+  +A+
Sbjct: 124 FIHGHLTPGGGFPGGATIATGFLLMYLAFIVYEIPHRGFEVTEGLAGMSYVLVGLIGLAI 183

Query: 180 IPLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVR 238
                  +I Q      + + G+L SG  I   I+  + +  G     ++ ++ ++EV+
Sbjct: 184 GGYFLFDWIWQTWHFGTSNL-GRLFSGGFIPV-IYTLIGIKVGTELSGIIDNMLKEEVK 240


>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
           >gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 235
           
 Score = 93.2 bits (228), Expect = 3e-18
 Identities = 59/187 (31%), Positives = 98/187 (51%), Gaps = 14/187 (7%)

Query: 8   IIMLIAIISLAYYV-----KLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDYRG 62
           ++ +I I+ + Y++      +P   +   +G++YL +         +   VT+++ +YRG
Sbjct: 5   VLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHV---KEQTGAVNAVTAVVVNYRG 61

Query: 63  VDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIALH 122
            DTL E +V F+A  G  AL    +RER  K+ G ++++   +K++   I+     I +H
Sbjct: 62  FDTLGEVTVLFIASTGVAALLWRRKRERTAKTPG-SVVLTTGSKLLFPFIVLFGMYIFIH 120

Query: 123 GHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALIPL 182
           GHLTPGGGF GG+ +A A LL+  A+  Y +   G + T  L   S       LV LI L
Sbjct: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMS-----YVLVGLIGL 175

Query: 183 LEGGFIM 189
             GG+ +
Sbjct: 176 AIGGYFL 182


>pir||G72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981762|gb|AAD36284.1|AE001778_5 (AE001778)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 254
           
 Score = 84.3 bits (205), Expect = 1e-15
 Identities = 80/259 (30%), Positives = 114/259 (43%), Gaps = 47/259 (18%)

Query: 1   MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAK------------ 48
           M+RF  ++I    +     YV L   T L P GK  L      +Y AK            
Sbjct: 1   MRRFFAILISAAFV-----YVMLSFITTLEPFGKIDLSRRVSVHYLAKDVNTVDSRKWIE 55

Query: 49  --------------------SPEVVTSILWDYRGVDTLFETSVFFLAIIGSLALFSLERR 88
                               S  VVTSI+ +YR  DTL E +V   A IG   +    RR
Sbjct: 56  GNLQVPSERRIYGESNLEDGSANVVTSIVVNYRSFDTLGEVTVLLAAAIGVGTILRGSRR 115

Query: 89  ERKRKSQGLTLIVRDVTKVIVAMIITVSASIALHGHLTPGGGFQGGSALAVAPLLIIAAY 148
            + R+     L V   T +++ +I+     I +HGHL+PGGGF GG+ +A A LL+  + 
Sbjct: 116 MKYRREPNFILKVS--TGILLPLILMFGVYIFVHGHLSPGGGFPGGTVIAAAILLLYLSN 173

Query: 149 SKYVLEEHGLDKTRALVLR-SIGLLGITLVALIPLLEGGFIMQNQPIFPAEIGGQLLSGS 207
                EE  L++ RA +L  S+G L + LV LI LL GG  + N  +    +G    +G 
Sbjct: 174 -----EEFTLNEGRAKLLEGSMGALYV-LVGLIGLLTGGAFLYNF-LSTGRVGDLFSAGV 226

Query: 208 LIYYNIFEFLAVGAGFTAV 226
           +    I   L VG+  + V
Sbjct: 227 VPVVYIIIGLKVGSELSGV 245


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.144    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81923417
Number of Sequences: 2977
Number of extensions: 3258089
Number of successful extensions: 10500
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10495
Number of HSP's gapped (non-prelim): 5
length of query: 239
length of database: 189,106,746
effective HSP length: 54
effective length of query: 185
effective length of database: 156,788,448
effective search space: 29005862880
effective search space used: 29005862880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)