BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1399 (PAB1399) DE:Hypothetical protein
(239 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (st... 462 e-129
pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii ... 99 4e-20
pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st... 93 3e-18
pir||G72280 conserved hypothetical protein - Thermotoga maritima... 84 1e-15
>pir||A75060 hypothetical protein PAB1399 - Pyrococcus abyssi (strain Orsay)
>gi|5458887|emb|CAB50374.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 462 bits (1177), Expect = e-129
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY 60
MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY
Sbjct: 1 MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDY 60
Query: 61 RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA 120
RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA
Sbjct: 61 RGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIA 120
Query: 121 LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI 180
LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI
Sbjct: 121 LHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALI 180
Query: 181 PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA 239
PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA
Sbjct: 181 PLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVRA 239
>pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii
>gi|3257878|dbj|BAA30561.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 99.1 bits (243), Expect = 4e-20
Identities = 71/239 (29%), Positives = 125/239 (51%), Gaps = 7/239 (2%)
Query: 1 MKRFIPLIIMLIAIISLAY-YVKLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWD 59
+KR + +I++LI +A +P + +GK+YL++ + VT+++ +
Sbjct: 8 LKRLLSIILILIIGYWIAQGLANVPFGEDRMLVGKYYLQHV---KEQTGAVNAVTAVVVN 64
Query: 60 YRGVDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASI 119
YRG DTL E +V F+A G AL +RRER K++G +L++ +K++ I+ I
Sbjct: 65 YRGFDTLGEVTVLFIASTGVAALLWRKRRERTAKTEG-SLVLTTGSKLLFPFIMLFGMYI 123
Query: 120 ALHGHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVAL 179
+HGHLTPGGGF GG+ +A LL+ A+ Y + G + T L S L+G+ +A+
Sbjct: 124 FIHGHLTPGGGFPGGATIATGFLLMYLAFIVYEIPHRGFEVTEGLAGMSYVLVGLIGLAI 183
Query: 180 IPLLEGGFIMQNQPIFPAEIGGQLLSGSLIYYNIFEFLAVGAGFTAVFLLLSIPEKEVR 238
+I Q + + G+L SG I I+ + + G ++ ++ ++EV+
Sbjct: 184 GGYFLFDWIWQTWHFGTSNL-GRLFSGGFIPV-IYTLIGIKVGTELSGIIDNMLKEEVK 240
>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
>gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 235
Score = 93.2 bits (228), Expect = 3e-18
Identities = 59/187 (31%), Positives = 98/187 (51%), Gaps = 14/187 (7%)
Query: 8 IIMLIAIISLAYYV-----KLPQQTELRPLGKFYLENSYFGNYSAKSPEVVTSILWDYRG 62
++ +I I+ + Y++ +P + +G++YL + + VT+++ +YRG
Sbjct: 5 VLAIITILIIGYWLAEGLANVPFGQDKMLVGQYYLNHV---KEQTGAVNAVTAVVVNYRG 61
Query: 63 VDTLFETSVFFLAIIGSLALFSLERRERKRKSQGLTLIVRDVTKVIVAMIITVSASIALH 122
DTL E +V F+A G AL +RER K+ G ++++ +K++ I+ I +H
Sbjct: 62 FDTLGEVTVLFIASTGVAALLWRRKRERTAKTPG-SVVLTTGSKLLFPFIVLFGMYIFIH 120
Query: 123 GHLTPGGGFQGGSALAVAPLLIIAAYSKYVLEEHGLDKTRALVLRSIGLLGITLVALIPL 182
GHLTPGGGF GG+ +A A LL+ A+ Y + G + T L S LV LI L
Sbjct: 121 GHLTPGGGFPGGATIATAFLLMYLAFIVYEIPHKGFETTEGLAGMS-----YVLVGLIGL 175
Query: 183 LEGGFIM 189
GG+ +
Sbjct: 176 AIGGYFL 182
>pir||G72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981762|gb|AAD36284.1|AE001778_5 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 254
Score = 84.3 bits (205), Expect = 1e-15
Identities = 80/259 (30%), Positives = 114/259 (43%), Gaps = 47/259 (18%)
Query: 1 MKRFIPLIIMLIAIISLAYYVKLPQQTELRPLGKFYLENSYFGNYSAK------------ 48
M+RF ++I + YV L T L P GK L +Y AK
Sbjct: 1 MRRFFAILISAAFV-----YVMLSFITTLEPFGKIDLSRRVSVHYLAKDVNTVDSRKWIE 55
Query: 49 --------------------SPEVVTSILWDYRGVDTLFETSVFFLAIIGSLALFSLERR 88
S VVTSI+ +YR DTL E +V A IG + RR
Sbjct: 56 GNLQVPSERRIYGESNLEDGSANVVTSIVVNYRSFDTLGEVTVLLAAAIGVGTILRGSRR 115
Query: 89 ERKRKSQGLTLIVRDVTKVIVAMIITVSASIALHGHLTPGGGFQGGSALAVAPLLIIAAY 148
+ R+ L V T +++ +I+ I +HGHL+PGGGF GG+ +A A LL+ +
Sbjct: 116 MKYRREPNFILKVS--TGILLPLILMFGVYIFVHGHLSPGGGFPGGTVIAAAILLLYLSN 173
Query: 149 SKYVLEEHGLDKTRALVLR-SIGLLGITLVALIPLLEGGFIMQNQPIFPAEIGGQLLSGS 207
EE L++ RA +L S+G L + LV LI LL GG + N + +G +G
Sbjct: 174 -----EEFTLNEGRAKLLEGSMGALYV-LVGLIGLLTGGAFLYNF-LSTGRVGDLFSAGV 226
Query: 208 LIYYNIFEFLAVGAGFTAV 226
+ I L VG+ + V
Sbjct: 227 VPVVYIIIGLKVGSELSGV 245
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.144 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81923417
Number of Sequences: 2977
Number of extensions: 3258089
Number of successful extensions: 10500
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10495
Number of HSP's gapped (non-prelim): 5
length of query: 239
length of database: 189,106,746
effective HSP length: 54
effective length of query: 185
effective length of database: 156,788,448
effective search space: 29005862880
effective search space used: 29005862880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)