BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1400 (PAB1400) DE:Hypothetical protein
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75059 hypothetical protein PAB1400 - Pyrococcus abyssi (st...   239  8e-63
pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyss...    70  1e-11
pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii ...    68  4e-11

>pir||H75059 hypothetical protein PAB1400 - Pyrococcus abyssi (strain Orsay)
           >gi|5458886|emb|CAB50373.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 123
           
 Score =  239 bits (604), Expect = 8e-63
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MIWEIIVFTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPI 60
           MIWEIIVFTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPI
Sbjct: 1   MIWEIIVFTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPI 60

Query: 61  LPNLSKEALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILRG 120
           LPNLSKEALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILRG
Sbjct: 61  LPNLSKEALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILRG 120

Query: 121 DAQ 123
           DAQ
Sbjct: 121 DAQ 123


>pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458133|emb|CAB49622.1| (AJ248285) LONG
           HYPOTHETICAL PROTEIN [Pyrococcus abyssi]
           Length = 114
           
 Score = 69.9 bits (168), Expect = 1e-11
 Identities = 44/112 (39%), Positives = 63/112 (55%), Gaps = 8/112 (7%)

Query: 8   FTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPILPNLSKE 67
           F  IA + I LY +  K NL+K LI L+I     NLL++ +GY     V+    P LS+ 
Sbjct: 7   FGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGY-----VSGRSAPILSEG 61

Query: 68  ALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILR 119
             P   + AVDP+PQA V+TA+VIG+A   +     I +Y  YGT++   +R
Sbjct: 62  IGP---NQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIR 110


>pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii
           >gi|3257877|dbj|BAA30560.1| (AP000006) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score = 67.9 bits (163), Expect = 4e-11
 Identities = 43/112 (38%), Positives = 62/112 (54%), Gaps = 8/112 (7%)

Query: 8   FTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPILPNLSKE 67
           F  I+ + I LY +  K NL+K LI L+I     NLL++ +GY     V+    P LS+ 
Sbjct: 7   FGAISLVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGY-----VSGRSAPILSEG 61

Query: 68  ALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILR 119
             P   S AVDP+PQA V+TA+VIG+A   +     I +Y  Y T++   +R
Sbjct: 62  ITP---SQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYRTLNIEEIR 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.148    0.427 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40777987
Number of Sequences: 2977
Number of extensions: 1416130
Number of successful extensions: 5629
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5626
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 189,106,746
effective HSP length: 49
effective length of query: 74
effective length of database: 159,780,883
effective search space: 11823785342
effective search space used: 11823785342
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 160 (66.7 bits)