BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1401 (PAB1401) DE:Hypothetical protein
(161 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (st... 331 4e-90
pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii ... 101 4e-21
pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (st... 92 5e-18
pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj... 91 6e-18
pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (st... 91 6e-18
pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii ... 83 1e-15
pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (st... 81 7e-15
pir||C72280 conserved hypothetical protein - Thermotoga maritima... 80 2e-14
>pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (strain Orsay)
>gi|5458885|emb|CAB50372.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 161
Score = 331 bits (839), Expect = 4e-90
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MRGFIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLW 60
MRGFIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLW
Sbjct: 1 MRGFIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLW 60
Query: 61 GVVYFLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPGTV 120
GVVYFLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPGTV
Sbjct: 61 GVVYFLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPGTV 120
Query: 121 VVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
VVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE
Sbjct: 121 VVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
>pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii
>gi|3257850|dbj|BAA30533.1| (AP000006) 167aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 167
Score = 101 bits (250), Expect = 4e-21
Identities = 57/167 (34%), Positives = 97/167 (57%), Gaps = 15/167 (8%)
Query: 4 FIPTFILAFLTYVLFTGSIRTF-----DLITGLIVGIIVGLLMGNYLVKDDSKALNPVRW 58
FI FI ++ +++ T + +LI GLI IVG N + + S+ LNPV+W
Sbjct: 3 FITAFIWSYFMWLILTAGSKGLLWNSQELIAGLIFSAIVGYATRNIIGERASRFLNPVKW 62
Query: 59 LWGVVY---FLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITN 115
+ + Y W M+ +A+LDV R +TG PGIVKVP++++ D T+++ SIT
Sbjct: 63 ILFIAYAPVLFWGMI----KANLDVAYRVITGKIRPGIVKVPVNLENDAQYTILSNSITL 118
Query: 116 TPGTVVVDL--DDKFMYVNWINVTT-TEPEEAKKVICEDFERYAKKI 159
TPGT+ ++ ++K +YV+WIN+ E E+ + + FE++A+++
Sbjct: 119 TPGTLTIEASPEEKVLYVHWINIPKGLEWPESSEPVSGPFEKWARRL 165
>pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (strain Orsay)
>gi|5458155|emb|CAB49644.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 167
Score = 91.7 bits (224), Expect = 5e-18
Identities = 53/169 (31%), Positives = 96/169 (56%), Gaps = 15/169 (8%)
Query: 4 FIPTFILAFLTYVLFTGSIRTF-----DLITGLIVGIIVGLLMGNYLVKDDSKALNPVRW 58
FI FI ++ +++ T + +LI GLI IVG N + + + LNP++
Sbjct: 3 FIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKL 62
Query: 59 LWGVVY---FLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITN 115
+ + Y W M+ +A+LDV R +TG PGIV+VP++++ D T+++ SIT
Sbjct: 63 VLFIAYAPVLFWGMV----KANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118
Query: 116 TPGTVVVDL--DDKFMYVNWINVTT-TEPEEAKKVICEDFERYAKKIFE 161
TPGT+ ++ ++K +YV+WIN+ E ++ + + FE++A+++ E
Sbjct: 119 TPGTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
>pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj|BAA30563.1|
(AP000006) 174aa long hypothetical phaE product
[Pyrococcus horikoshii]
Length = 174
Score = 91.3 bits (223), Expect = 6e-18
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 4 FIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLWGVV 63
++ TFI+ + ++ T S+ +LI G+I IV + L+P R + ++
Sbjct: 16 YLYTFIVVLIIWLFLTASLDPQELIVGIIFSAIVAGFTYDIFTTRGLSNLHPRRIAYAII 75
Query: 64 Y---FLWYMLVAETRAHLDVIVRTLTGN--YNPGIVKVPIDVKTDYAKTLIATSITNTPG 118
Y FLW M+ +A+LDV R L NPGIV+ ++K + K +A SIT TPG
Sbjct: 76 YIPYFLWAMI----KANLDVAYRVLHPKRPINPGIVECKTELKNEVGKLALANSITLTPG 131
Query: 119 TVVVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
T+ +D+D +++WI+V + E A + I + FE++ K IFE
Sbjct: 132 TITLDIDGDRYFIHWIDVKDSSIEGASEHITKPFEKFLKVIFE 174
>pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (strain Orsay)
>gi|5458129|emb|CAB49618.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 168
Score = 91.3 bits (223), Expect = 6e-18
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 4 FIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLWGVV 63
F+ TFI+ F+ ++ T S+ +L G I IV L + L+P R + ++
Sbjct: 10 FLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRIAYAII 69
Query: 64 Y---FLWYMLVAETRAHLDVIVRTLTGN--YNPGIVKVPIDVKTDYAKTLIATSITNTPG 118
Y FLW M+ +A+LDV R L NPGIV+ +K + K +A SIT TPG
Sbjct: 70 YVPYFLWAMI----KANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTPG 125
Query: 119 TVVVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
T+ +D+D +++WI+V + E A + I FE++ K IFE
Sbjct: 126 TITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
>pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii
>gi|3257360|dbj|BAA30043.1| (AP000004) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 83.5 bits (203), Expect = 1e-15
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 4 FIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKD--DSKALNPVRWLWG 61
F T+++ + ++ TG + LI G I+ + ++L +D SK L W
Sbjct: 35 FAITWLILLVFWLGITGDLSYRGLILGFPTTAIISYYLRDFLTEDIRHSKHL-----AWK 89
Query: 62 VVYFLW-----YMLVAETR---AHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSI 113
++YF + Y+++ R ++L V L + NPGIVK+ D+ +D T++A SI
Sbjct: 90 ILYFAFIYLPQYLIIMGFRLLESNLKVAKHALLMDINPGIVKIRTDLHSDTGITILANSI 149
Query: 114 TNTPGTVVVD----LDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIF 160
T TPGT+ +D LD ++YV+WI+V T E+A ++I D E + KK+F
Sbjct: 150 TLTPGTLTLDVVKKLDGTYLYVHWIDVETLNVEKAGEIIKGDIEEWLKKMF 200
>pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (strain Orsay)
>gi|5458625|emb|CAB50113.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 81.1 bits (197), Expect = 7e-15
Identities = 51/166 (30%), Positives = 88/166 (52%), Gaps = 13/166 (7%)
Query: 8 FILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYL---VKDDSKALNPVRW---LWG 61
F+L ++T + F I G+ +G I ++ YL + DD + + W +
Sbjct: 35 FVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYFA 94
Query: 62 VVYFLWYMLVAETR---AHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITNTPG 118
++YF Y+++ R +++ V + + NPGIVK+ + +D T++A SIT TPG
Sbjct: 95 LIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITLTPG 154
Query: 119 TVVVD----LDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIF 160
T+ +D LD ++YV+WI+V T E A ++I D E + KK+F
Sbjct: 155 TLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
>pir||C72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981758|gb|AAD36280.1|AE001778_1 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 155
Score = 80.0 bits (194), Expect = 2e-14
Identities = 53/156 (33%), Positives = 88/156 (55%), Gaps = 10/156 (6%)
Query: 12 FLTYVLFTGSIRTF---DLITGLIVGIIVGLLMGNYL-VKDDSKALNPVRWLWGVVYFLW 67
FLT ++ I F +L+ G++V + V L+ Y ++ D+K P+R + V FL
Sbjct: 4 FLTSLILWLVITRFSYSELLAGIVVSLAVSLIFRKYHGIRFDAKL--PLRIVRYAVMFLP 61
Query: 68 YMLVAETRAHLDVIVRTLTGNY--NPGIVKVPIDVKTDYAKTLIATSITNTPGTVVVDLD 125
++ +A++DV +R L PG V++ ++K D ++ +A SIT TPGT+ VD+
Sbjct: 62 IFIIEMVKANIDVALRVLNPRLPLKPGFVELKTNLKKDASRLFLANSITLTPGTLSVDVK 121
Query: 126 DKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
D ++V+WI V +T EE ++ I FER K +FE
Sbjct: 122 DDRIFVHWIEVKST--EEKERYISGKFERLIKGVFE 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62618841
Number of Sequences: 2977
Number of extensions: 2519525
Number of successful extensions: 10604
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10590
Number of HSP's gapped (non-prelim): 8
length of query: 161
length of database: 189,106,746
effective HSP length: 49
effective length of query: 112
effective length of database: 159,780,883
effective search space: 17895458896
effective search space used: 17895458896
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 162 (67.5 bits)