BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1409 (PAB1409) DE:Hypothetical protein
         (423 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75058 hypothetical protein PAB1409 - Pyrococcus abyssi (st...   821  0.0
sp|P37781|RFBE_SHIFL PUTATIVE O-ANTIGEN TRANSPORTER >gi|1084131|...    74  3e-12

>pir||H75058 hypothetical protein PAB1409 - Pyrococcus abyssi (strain Orsay)
           >gi|5458878|emb|CAB50365.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 423
           
 Score =  821 bits (2098), Expect = 0.0
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MNVFKYLSNKLNEVREMLEILMQEIKNVRTSFYRESIYISASTVMNATAGFIFWNIATNL 60
           MNVFKYLSNKLNEVREMLEILMQEIKNVRTSFYRESIYISASTVMNATAGFIFWNIATNL
Sbjct: 1   MNVFKYLSNKLNEVREMLEILMQEIKNVRTSFYRESIYISASTVMNATAGFIFWNIATNL 60

Query: 61  YSLPEVGIASTLVSAMNLIVMVSFLGLNFSLIRFYPRYREKTIGTTIIVTLIASVIFSTM 120
           YSLPEVGIASTLVSAMNLIVMVSFLGLNFSLIRFYPRYREKTIGTTIIVTLIASVIFSTM
Sbjct: 61  YSLPEVGIASTLVSAMNLIVMVSFLGLNFSLIRFYPRYREKTIGTTIIVTLIASVIFSTM 120

Query: 121 YLLIVGNSESFRGVFSTKLLAIFVFFSMIGTTYNVLFTYGIAKKRAKHSFILSIFFSLRF 180
           YLLIVGNSESFRGVFSTKLLAIFVFFSMIGTTYNVLFTYGIAKKRAKHSFILSIFFSLRF
Sbjct: 121 YLLIVGNSESFRGVFSTKLLAIFVFFSMIGTTYNVLFTYGIAKKRAKHSFILSIFFSLRF 180

Query: 181 LFLVFLISFGALGIVTAFGLGLTLGVIYGLIALDDIKLGLDFEYLKISFKFSLTNYIAHL 240
           LFLVFLISFGALGIVTAFGLGLTLGVIYGLIALDDIKLGLDFEYLKISFKFSLTNYIAHL
Sbjct: 181 LFLVFLISFGALGIVTAFGLGLTLGVIYGLIALDDIKLGLDFEYLKISFKFSLTNYIAHL 240

Query: 241 ANITPKYIMPTIVLAMLGKEDAAYLYIAFAVGDLILFVPNAINTSLFVEGSHGVEYFRKT 300
           ANITPKYIMPTIVLAMLGKEDAAYLYIAFAVGDLILFVPNAINTSLFVEGSHGVEYFRKT
Sbjct: 241 ANITPKYIMPTIVLAMLGKEDAAYLYIAFAVGDLILFVPNAINTSLFVEGSHGVEYFRKT 300

Query: 301 LRKAMIFAYLYLVLATVFIWLFGGYVLRFFGEKYINSLPLLKLIILGGFSAVLVDFFTTI 360
           LRKAMIFAYLYLVLATVFIWLFGGYVLRFFGEKYINSLPLLKLIILGGFSAVLVDFFTTI
Sbjct: 301 LRKAMIFAYLYLVLATVFIWLFGGYVLRFFGEKYINSLPLLKLIILGGFSAVLVDFFTTI 360

Query: 361 LNIKSKLNKVLIINLSRAVLFLLLSYLLIQKFGILGVGIGWNIGNAIVALKIILFERHRY 420
           LNIKSKLNKVLIINLSRAVLFLLLSYLLIQKFGILGVGIGWNIGNAIVALKIILFERHRY
Sbjct: 361 LNIKSKLNKVLIINLSRAVLFLLLSYLLIQKFGILGVGIGWNIGNAIVALKIILFERHRY 420

Query: 421 FFK 423
           FFK
Sbjct: 421 FFK 423


>sp|P37781|RFBE_SHIFL PUTATIVE O-ANTIGEN TRANSPORTER >gi|1084131|pir||JC4069 rfbX protein
           - Shigella flexneri >gi|454902|emb|CAA50771.1| (X71970)
           rfbE [Shigella flexneri]
           Length = 418
           
 Score = 74.1 bits (179), Expect = 3e-12
 Identities = 83/352 (23%), Positives = 156/352 (43%), Gaps = 29/352 (8%)

Query: 85  LGLNFSLIRFYPRYREKTIGTTIIVTLIASVI-----FSTMYLLI----VGNSESFRGV- 134
           +GL  S+IR    +R+     T +++   S +     F    LLI    + N     GV 
Sbjct: 55  VGLTRSVIREIAIHRDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVE 114

Query: 135 -----FSTKLLAIFVFFSMIGTTYNVLFT----YGIAKKRAKHSFILSIFFSLRFLFLVF 185
                 + KLLAI +   ++   ++ +      +GI   +   S          F+F   
Sbjct: 115 HSDIQLAFKLLAICIPLFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIPAIFVFYSA 174

Query: 186 LISFGALGIVTAFGLGLTLGVIYGLIALDDIKL-GLDFEY--LKISFKFSLTNYIAHLAN 242
            +S    G++ A  + + +   Y     +DIK+ G+ F Y   K  F F     ++++ +
Sbjct: 175 TLSAAVAGLIFARVISILVSAYY---VRNDIKISGVHFCYKTFKRLFFFGGWMTVSNIIS 231

Query: 243 ITPKYIMPTIVLAMLGKEDAAYLYIAFAVGDLILFVPNAINTSLFVEGSHGVEY--FRKT 300
               Y    IV  ++G E  A+      V   +  +P AI  ++F   S+  ++  F++ 
Sbjct: 232 PVMVYFDRFIVSNIMGAEKVAFYSAPAEVILKLGIIPAAIGRAVFPRLSNIKDFKAFKRN 291

Query: 301 LRKAMIFAYLYLVLATVFIWLFGGYVLR-FFGEKY-INSLPLLKLIILGGFSAVLVDFFT 358
           + K+++  +L  +   +   L+ G VL+ +FGE Y INS  +L ++++G F   L     
Sbjct: 292 VNKSLLLMFLICLPVIIIGLLYSGLVLKIWFGENYQINSFNILNVLLIGFFFNALAMIPF 351

Query: 359 TILNIKSKLNKVLIINLSRAVLFLLLSYLLIQKFGILGVGIGWNIGNAIVAL 410
           + +    K     +I+ +  V +L L Y +++K+G+LG  I W+I   + AL
Sbjct: 352 SAIQALGKSKITALIHCAELVPYLALLYFMVEKYGLLGAAISWSIRVILDAL 403


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.148    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134636471
Number of Sequences: 2977
Number of extensions: 5450341
Number of successful extensions: 23872
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23871
Number of HSP's gapped (non-prelim): 2
length of query: 423
length of database: 189,106,746
effective HSP length: 54
effective length of query: 369
effective length of database: 156,788,448
effective search space: 57854937312
effective search space used: 57854937312
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 166 (69.1 bits)