BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1410 (PAB1410) DE:LPS BIOSYNTHESIS RFBU RELATED PROTEIN.
(368 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75058 probable hexosyltransferase (EC 2.4.1.-) PAB1410 [si... 745 0.0
gi|11497939 conserved hypothetical protein [Archaeoglobus fulgid... 316 2e-85
pir||F69142 probable hexosyltransferase (EC 2.4.1.-) MTH332 [sim... 309 3e-83
gi|11497659 conserved hypothetical protein [Archaeoglobus fulgid... 309 5e-83
pir||C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Me... 149 4e-35
pir||C72590 probable hexosyltransferase (EC 2.4.1.-) APE1191 [si... 123 4e-27
gi|11498225 LPS biosynthesis protein, putative [Archaeoglobus fu... 118 1e-25
pir||E69050 GlcNAc-phosphatidylinositol related biosynthetic pro... 118 1e-25
pir||G75007 lps biosynthesis rfbu related protein PAB1301 - Pyro... 102 5e-21
pir||A75033 probable hexosyltransferase (EC 2.4.1.-) PAB0827 [si... 101 1e-20
gi|11499317 galactosyltransferase [Archaeoglobus fulgidus] >gi|7... 100 3e-20
pir||D72511 probable hexosyltransferase (EC 2.4.1.-) APE2066 [si... 97 3e-19
pir||E70156 lipopolysaccharide biosynthesis-related protein homo... 95 1e-18
pir||C71154 hypothetical protein PH0434 - Pyrococcus horikoshii ... 92 7e-18
pir||F70441 capsular polysaccharide biosynthsis protein - Aquife... 89 6e-17
pir||F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 - Me... 88 2e-16
pir||E71699 capm protein (capM2) RP414 - Rickettsia prowazekii >... 88 2e-16
pir||E72354 probable hexosyltransferase (EC 2.4.1.-) TM0622 - Th... 85 9e-16
pir||F64175 hypothetical protein HI1698 (lsg locus) - Haemophilu... 82 8e-15
pir||A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 [si... 82 8e-15
pir||F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Py... 81 2e-14
pir||S76126 hypothetical protein - Synechocystis sp. (strain PCC... 80 4e-14
pir||F70346 mannosyltransferase C - Aquifex aeolicus >gi|2983151... 80 5e-14
emb|CAB09632.1| (Z96801) hypothetical protein MLCL581.14c [Mycob... 79 7e-14
pir||B75520 probable lipopolysaccharide biosynthesis protein - D... 79 9e-14
emb|CAB70927.1| (AL137778) putative sugar transferase [Streptomy... 79 9e-14
pir||A70571 probable hexosyltransferase (EC 2.4.1.-) Rv2610c [si... 78 1e-13
pir||G70961 probable hexosyltransferase (EC 2.4.1.-) Rv0225 [sim... 78 2e-13
gb|AAG18700.1| (AE004975) LPS biosynthesis protein; Lpb [Halobac... 77 3e-13
gb|AAB08106.1| (U68035) HepB [Anabaena sp.] 77 4e-13
emb|CAB57789.1| (AJ250131) HepD protein [Anabaena PCC7120] 77 4e-13
pir||H83539 probable glycosyl transferase PA0842 [imported] - Ps... 77 4e-13
gb|AAC60772.1| (U46859) WbcI [Yersinia enterocolitica (type 0:8)] 76 5e-13
gb|AAF14309.1| (U45308) SqdX [Synechococcus PCC7942] 76 6e-13
pir||C75423 probable mannosyltransferase - Deinococcus radiodura... 76 8e-13
pir||C72340 probable hexosyltransferase (EC 2.4.1.-) TM0744 - Th... 74 2e-12
pir||T34704 probable transferase - Streptomyces coelicolor >gi|3... 74 3e-12
gb|AAK41259.1| Glycogen synthase [Sulfolobus solfataricus] 73 4e-12
dbj|BAB06407.1| (AP001516) alpha-D-mannose-alpha(1-6)phosphatidy... 73 4e-12
gb|AAD46732.1|AF078736_12 (AF078736) putative glycosyl transfera... 73 5e-12
dbj|BAB07431.1| (AP001519) unknown conserved protein [Bacillus h... 73 7e-12
pir||C70859 probable hexosyltransferase (EC 2.4.1.-) Rv3032 [sim... 72 9e-12
sp|P39862|CAPM_STAAU CAPM PROTEIN >gi|506709|gb|AAA64652.1| (U10... 72 9e-12
pir||S28485 lipopolysaccharide biosynthesis protein RfbV VC0259 ... 71 2e-11
emb|CAA69126.1| (Y07788) RfbV [Vibrio cholerae] 71 2e-11
dbj|BAB05134.1| (AP001512) unknown conserved protein in others [... 71 2e-11
gb|AAD46728.1|AF078736_2 (AF078736) putative glycosyl transferas... 71 2e-11
emb|CAC12195.1| (AL445066) N-acetylglucosaminyl-phosphatidylinos... 71 2e-11
pir||B64432 capsular polysaccharide biosynthsis protein M homolo... 71 3e-11
pir||S74777 hypothetical protein slr1076 - Synechocystis sp. (st... 71 3e-11
dbj|BAB07382.1| (AP001519) lipopolysaccharide biosynthesis [Baci... 71 3e-11
dbj|BAB18471.1| (AB033991) BtrM [Bacillus circulans] 71 3e-11
pir||S77553 probable hexosyltransferase (EC 2.4.1.-) sll1971 [si... 70 4e-11
sp|P13484|TAGE_BACSU PROBABLE POLY(GLYCEROL-PHOSPHATE) ALPHA-GLU... 70 5e-11
pir||H64446 probable hexosyltransferase (EC 2.4.1.-) MJ1178 [sim... 70 5e-11
pir||F72257 lipopolysaccharide biosynthesis protein-related prot... 70 5e-11
emb|CAB75373.1| (AL139298) putative transferase [Streptomyces co... 70 5e-11
>pir||G75058 probable hexosyltransferase (EC 2.4.1.-) PAB1410 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458877|emb|CAB50364.1| (AJ248287) LPS BIOSYNTHESIS
RFBU RELATED PROTEIN. [Pyrococcus abyssi]
Length = 368
Score = 745 bits (1902), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL 60
MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL
Sbjct: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL 60
Query: 61 YSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEI 120
YSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEI
Sbjct: 61 YSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEI 120
Query: 121 WKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRI 180
WKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRI
Sbjct: 121 WKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRI 180
Query: 181 QRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVS 240
QRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVS
Sbjct: 181 QRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVS 240
Query: 241 KLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPL 300
KLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPL
Sbjct: 241 KLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPL 300
Query: 301 NASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWDNITQLTERL 360
NASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWDNITQLTERL
Sbjct: 301 NASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWDNITQLTERL 360
Query: 361 YERVLYGS 368
YERVLYGS
Sbjct: 361 YERVLYGS 368
>gi|11497939 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451323|pir||G69290 probable hexosyltransferase (EC
2.4.1.-) AF0327 [similarity] - Archaeoglobus fulgidus
>gi|2650310|gb|AAB90909.1| (AE001082) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 357
Score = 316 bits (802), Expect = 2e-85
Identities = 171/368 (46%), Positives = 236/368 (63%), Gaps = 23/368 (6%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSK-KHEVHWISLDWGGN----IPSIKLQKVG 55
M + +IYDAVYP+VKGGVEKR+YEIG RLS V W+ W G + I+L V
Sbjct: 1 MEVVFIYDAVYPWVKGGVEKRIYEIGKRLSHWGFRVKWLCAGWWGKEQRKLEGIELIPVC 60
Query: 56 RGVSLYSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVI 115
+ LYSG+RRSI AL F+ + AK + D++DCQ FPYL F R +V+
Sbjct: 61 GPLRLYSGERRSISSALSFALSLAKNAKINADVLDCQVFPYLSVFP-----FFRRRNLVL 115
Query: 116 TWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA-LIPNG 174
TWHE W +YWK+YLG G G QIE++++ L V+VS+ T + L ++G+ + +IPNG
Sbjct: 116 TWHEYWGDYWKEYLGYAGLFGRQIERIVASLDRKMVAVSETTARNLLNLGVKNVEVIPNG 175
Query: 175 IDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYR 234
IDF+ I+RV+ + DV+F GRLIKEK DLL++A+KL+ PD LI+GEGPEK
Sbjct: 176 IDFEFIRRVEASEESLDVVFAGRLIKEKGADLLIKAMKLL----PDYSCLIVGEGPEKAS 231
Query: 235 LLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVI 294
L+ ENVKF F+N Y LIA LKS+KVFVLPS+REGFGI LEANA G+PV+
Sbjct: 232 LIK-----SAPENVKFAGFMN-YGYLIATLKSAKVFVLPSRREGFGIAALEANACGLPVV 285
Query: 295 TLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWDNIT 354
T+++P+NA ++ GFI+ P+P +AE I++++ KK +R C+ AR++DW I
Sbjct: 286 TINHPMNAVVEIARE--TGFIASPSPQDIAEKIKIAMESRKKMRRRCVDYARKFDWSVIA 343
Query: 355 QLTERLYE 362
+ Y+
Sbjct: 344 KKMADFYD 351
>pir||F69142 probable hexosyltransferase (EC 2.4.1.-) MTH332 [similarity] -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621388|gb|AAB84838.1| (AE000818) LPS biosynthesis
RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 400
Score = 309 bits (784), Expect = 3e-83
Identities = 164/377 (43%), Positives = 241/377 (63%), Gaps = 15/377 (3%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDW----GGN----IPSIKL 51
MRIA++YD YP++KGGVEKRVYEIG RL+++ H+VHW + W G I IK
Sbjct: 26 MRIAFVYDGAYPWIKGGVEKRVYEIGRRLAERGHDVHWYCVGWWLPDNGERTIEIDGIKY 85
Query: 52 QKVGRGVSLYSGQRRSIREALYFSAKV---LLKAKWDYDIIDCQQFPYLPCFSSKVHSIL 108
V + +Y RRSI+ A+ FS + LL+ K +DIIDCQQFPY CFS+K+ S++
Sbjct: 86 HAVCEPLEIYVNGRRSIKAAIKFSISLTRPLLREK--FDIIDCQQFPYFSCFSAKLASLV 143
Query: 109 RNVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDS 168
++IT E W +YW +YLG +G G +E+L LTS ++++S + L
Sbjct: 144 NKSSLIITVLEYWGDYWYEYLGKVGIFGKIVERLTFNLTSDYITISSHVRNYLSFCKDSI 203
Query: 169 ALIPNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGE 228
++P+G+ F +I+++K ++ ++IFVGRLIK KNVD+LL+A+ L++DD L +IIG+
Sbjct: 204 HIVPDGVPFNKIRKIKPSSEKANLIFVGRLIKHKNVDVLLKALHLLRDDGFKLTCIIIGD 263
Query: 229 GPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANA 288
GPEK L+ + L L VKF+ + +++ Y+KS +FV PS REG G++ LEANA
Sbjct: 264 GPEKENLMKITRDLGLEAQVKFMGRVPSDDEVYKYMKSCNIFVFPSSREGAGLVTLEANA 323
Query: 289 SGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRY 348
+G+PVIT ++ LNASR+LI +G NG + +P L E I L ++ +K +++CIK A Y
Sbjct: 324 AGLPVITTNHKLNASRELI-NGKNGVLFNLDPHDLKEKIILIMNEHEKLRKDCIKFAESY 382
Query: 349 DWDNITQLTERLYERVL 365
WD I LTE +Y VL
Sbjct: 383 SWDKIADLTENVYLEVL 399
>gi|11497659 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451322|pir||F69254 probable hexosyltransferase (EC
2.4.1.-) AF0038 [similarity] - Archaeoglobus fulgidus
>gi|2650614|gb|AAB91191.1| (AE001104) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 361
Score = 309 bits (782), Expect = 5e-83
Identities = 161/368 (43%), Positives = 237/368 (63%), Gaps = 21/368 (5%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIK----LQKVGR 56
M I ++YDAVYP+ KGGVE+R++E+G RLS +H V W+ + W G I+ L V +
Sbjct: 1 MEIVFVYDAVYPWTKGGVERRLHEVGRRLSNEHNVKWLCVGWWGKEKRIQEGVELIPVCK 60
Query: 57 GVSLYSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVIT 116
LYS RR+IREA+ F+A +L K++ D+IDCQ FPYL F L V+T
Sbjct: 61 AQQLYSRGRRTIREAMIFAASLLKKSRIKADVIDCQVFPYLSVFPFATRKEL-----VLT 115
Query: 117 WHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGID 176
WHE W +YW +YLG G G +E+++++L + ++VS+ T+K L S+GI + +IPNG+D
Sbjct: 116 WHEFWGDYWYEYLGKAGFFGKAVERIVAKLKARTIAVSETTRKALESLGIRATVIPNGVD 175
Query: 177 FKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLL 236
F RI + +E+DVIFVGRLI+EKN++LL A+KL+ P+L L++G+GPE+ RL
Sbjct: 176 FPRISEIPASSEEWDVIFVGRLIREKNLELLFDAMKLL----PELNCLVVGDGPERERL- 230
Query: 237 TLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITL 296
SK+ NV F L YE++I+ +KSSKVF +PS+REGFGI LEANA G+PV+T+
Sbjct: 231 ---SKI-APANVDFGGSLG-YEEVISMMKSSKVFAIPSRREGFGISALEANACGLPVVTI 285
Query: 297 DYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWDNITQL 356
+ +NA ++ GF++ P+ AE I L+L + ++ + CI A+ +DW+ I +
Sbjct: 286 RHQMNAVVEIAEK--TGFVAEPHARDFAEKIRLALEMRREMREKCINFAKNFDWEVIARR 343
Query: 357 TERLYERV 364
E YE V
Sbjct: 344 LEEFYEGV 351
>pir||C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621216|gb|AAB84679.1| (AE000805) LPS biosynthesis
RfbU related protein [Methanobacterium
thermoautotrophicum]
Length = 382
Score = 149 bits (373), Expect = 4e-35
Identities = 122/392 (31%), Positives = 200/392 (50%), Gaps = 46/392 (11%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGG-----NIPSIKLQKV 54
MRI + D P GG E+R +EI RL ++ H V IS+ G + +++ +
Sbjct: 4 MRILIVSDFFVPHYNGGGERRYFEIARRLVERGHVVDVISMGIHGVGEYEEVSGVRVHHL 63
Query: 55 GRGVSLYSGQRRSIREALYFSAKVLLKAKW----DYDIIDCQQF-PYLPCF-SSKVHSIL 108
G + ++ +R L F + +W DYDIID Q + P LP F +S++H
Sbjct: 64 GPRI-----RKPPLRGPLDFIRFMAAAFRWVMTHDYDIIDAQTYAPLLPAFLASRIHG-- 116
Query: 109 RNVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHV-SVSKLTQKRLRSI--- 164
PMV T H++ + ++L + I +E+++ RL V +VS+ T L +
Sbjct: 117 --TPMVATIHDVSSAHGDQWLQSSKTATI-LERVLMRLPYDGVITVSRSTASALTELHGR 173
Query: 165 ---GIDSALIPNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDL 221
GI +IPNG+D + I V Y +IFVGRL K+VD L+ + D PDL
Sbjct: 174 NPDGIH--IIPNGVDPELIDSVTPATGNY-IIFVGRLAPHKHVDHLIEVFSKLVIDFPDL 230
Query: 222 KVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGI 281
++ IIG+G E+ RL +V + + ++V F L+ Y ++I+ ++ ++V VLPS REGFG+
Sbjct: 231 RLEIIGDGVERARLKAMVDECGIRDSVTFHHNLS-YPEVISRIRGARVLVLPSTREGFGM 289
Query: 282 IVLEANASGVPVITLDYPLNASRDLITHGYNGF-ISPPNPSSLAEYIELSLS-------L 333
++ EA A GVP + Y ++I G NGF + P + +L + I+L +S +
Sbjct: 290 VLAEAGACGVPAVA--YRSGGVVEVIDDGENGFLVEPCDKEALHDKIKLLISDDELRDRM 347
Query: 334 GKKFKRNCIKNARRYDWDNITQLTERLYERVL 365
G + ++ K + WD + ER Y ++
Sbjct: 348 GSQGRK---KVEEEFIWDRVVDEVERTYSFII 376
>pir||C72590 probable hexosyltransferase (EC 2.4.1.-) APE1191 [similarity] -
Aeropyrum pernix (strain K1) >gi|5104863|dbj|BAA80177.1|
(AP000061) 363aa long hypothetical capM protein
[Aeropyrum pernix]
Length = 363
Score = 123 bits (305), Expect = 4e-27
Identities = 106/364 (29%), Positives = 184/364 (50%), Gaps = 28/364 (7%)
Query: 1 MRIAYIY--DAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGV 58
MRI +I D +P GG E R+YEI RL K + + +P ++V G+
Sbjct: 1 MRILWINHRDPKHPQA-GGAEVRLYEIARRLVKMGHEVMVLCEKVSRLPG---EEVLEGI 56
Query: 59 SLY-SGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITW 117
+ SG R SI + + K +YD+I +P +S ++ P+V
Sbjct: 57 RIKRSGGRASIH---LLAPLYVRKHGHEYDVIVDDIAHAVPWYSP----LVTKTPVVAQI 109
Query: 118 HEIWKEYWKKYLGN-MGAIGIQIEKLMSRLTSHHVSVSKLTQKRL-RSIGIDS---ALIP 172
H + ++ L + I + EK ++++ ++VS+ T+K L + +GID A++P
Sbjct: 110 HHVHQDVVYIELPKPLAWIVSRAEKTIAKIYRRFIAVSQSTKKELAKRLGIDPDRIAVVP 169
Query: 173 NGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEK 232
NG+D ++ + K P+ +++ GR+ KN+D LL+A +++K ++PD +++IIG G ++
Sbjct: 170 NGVDLEKYRPGSKDPRP-TILWAGRIKMYKNLDHLLKAYRIVKQEIPDAQLIIIGTGDQE 228
Query: 233 YRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVP 292
++ L KLE +V F+ +++ EK I +++ + + V S EG+GI + EA A +P
Sbjct: 229 QKMRELAKKLE-PRDVHFLGKMSEQEK-IMWMQRAWIIVSTSMIEGWGITITEAAACKIP 286
Query: 293 VITLDYPLNASRDLITHGYNG-FISPPNPSSLAEYIELSL---SLGKKFKRNCIKNARRY 348
I + P RD + H G + P N LA+ I L SL K N A+ +
Sbjct: 287 AIAYNVP--GLRDSVKHMETGILVEPGNIEQLAKAIAWLLTDNSLRNKLSENAYNYAQSF 344
Query: 349 DWDN 352
WDN
Sbjct: 345 SWDN 348
>gi|11498225 LPS biosynthesis protein, putative [Archaeoglobus fulgidus]
>gi|7483856|pir||A69327 probable hexosyltransferase (EC
2.4.1.-) AF0617 - Archaeoglobus fulgidus
>gi|2650003|gb|AAB90623.1| (AE001062) LPS biosynthesis
protein, putative [Archaeoglobus fulgidus]
Length = 358
Score = 118 bits (292), Expect = 1e-25
Identities = 97/370 (26%), Positives = 180/370 (48%), Gaps = 25/370 (6%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL 60
M+IA + YP + GGVE VYEI +R++KK +V ++ D GG +P K++++ G+++
Sbjct: 1 MKIAQVCPRFYPHI-GGVETHVYEIASRIAKKFDVEVLTTDPGGKLP--KVEEID-GLTV 56
Query: 61 YSGQRRSIREALYFSAKV---LLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITW 117
+ + EA YFS ++ L K DYD++ + P + + + +
Sbjct: 57 RRFKSLAPSEAYYFSPELYDYLKKNSSDYDVVHAHNYHAFPALFAALTKGKNKLIFTPHY 116
Query: 118 HEIWKEYWKKYLGNMGAI-GIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGI- 175
H +++ L I G +I K + L K + + +IPNGI
Sbjct: 117 HGSGHSFFRNVLHKPYKIFGRKIFKRADAIVCVSNYEKNLVLKNFKVAEDRTYVIPNGIN 176
Query: 176 --DFKRIQRVKKLPQEY--DVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPE 231
+FK I+++K+ + + +++VGR+ K K +D +++++K + D + + ++G+G
Sbjct: 177 LDEFKDIEKIKRNKESWKKTILYVGRVEKYKGLDYVVKSLKHLPD---NFTLEVVGKGSY 233
Query: 232 KYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGV 291
K +++ + KL++ + ++F L+ E + Y K+ V VL SK E +GI+V EA A+
Sbjct: 234 KSKIVEMAKKLDVIDRIRFYQDLSRKELIDRYAKAD-VLVLLSKHEAYGIVVAEALAAKT 292
Query: 292 PVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNARRYDWD 351
P I + S + G P N S LA IE + + + DWD
Sbjct: 293 PCIVANTSA-LSEWIDNKNVFGIDYPINVSELARLIE-------RVSNVKAGDMKLLDWD 344
Query: 352 NITQLTERLY 361
++ + R+Y
Sbjct: 345 DVNERLIRIY 354
>pir||E69050 GlcNAc-phosphatidylinositol related biosynthetic protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621178|gb|AAB84644.1| (AE000802)
GlcNAc-phosphatidylinositol related biosynthetic protein
[Methanobacterium thermoautotrophicum]
Length = 384
Score = 118 bits (292), Expect = 1e-25
Identities = 104/361 (28%), Positives = 172/361 (46%), Gaps = 16/361 (4%)
Query: 14 VKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIK---LQKVGRGVSLYSGQRRSIRE 70
++GG E + +LS+KHEV ++ N + + ++ + G Q SI
Sbjct: 25 IRGGAEACAFNEALKLSEKHEVTVLTSRTPENPENYRCGNMEVICCGPVRSYVQAGSITG 84
Query: 71 ALYFSAKVLLKA-KWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWKEYWKKYL 129
L F + K D D + F P + + + RN + +H++W W + +
Sbjct: 85 RLSFMLSAYREGLKLDPDAVIGYNFITHPV--AWMIAGKRNAAALARYHDVWIGEWVRNI 142
Query: 130 GNMGAIGIQIEKL-MSRLTSHHVSVSKLTQKRL--RSIGIDSALIPNGIDFKRIQRVKKL 186
G G +G +E+ +SR V+VS+ T ++ R +++ N +DF R V+K
Sbjct: 143 GVSGILGELLERYTLSRRFDRIVAVSEYTAGKILERYPWQQVSVVHNMVDF-RTPPVRKT 201
Query: 187 PQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTE 246
+ V RL++ K + L+RA+ +I++ PD++ IIG GP + RL L +L + +
Sbjct: 202 STP-SIACVSRLVEYKRIQDLIRAVSVIREKFPDIRCRIIGTGPLEERLRGLARELAVED 260
Query: 247 NVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDL 306
NV+F+ F+ + ++ + S VF LPS EGFGI+V+EA G P + P
Sbjct: 261 NVEFMGFVEKHADVLEVIAESWVFCLPSVVEGFGIVVVEAMGCGTPFVAARIPPVMESSQ 320
Query: 307 ITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNA---RRYDWDNITQLTERLYER 363
G F P N LAE +EL LS G+ +R + A R Y D+I + ER+
Sbjct: 321 EKGGL--FFEPGNWRDLAEKLELLLSSGELHERLSSEAADVFRDYSADSIGRKLERVLTE 378
Query: 364 V 364
V
Sbjct: 379 V 379
>pir||G75007 lps biosynthesis rfbu related protein PAB1301 - Pyrococcus abyssi
(strain Orsay) >gi|5459015|emb|CAB50501.1| (AJ248288)
LPS BIOSYNTHESIS RFBU RELATED PROTEIN [Pyrococcus
abyssi]
Length = 330
Score = 102 bits (253), Expect = 5e-21
Identities = 104/359 (28%), Positives = 161/359 (43%), Gaps = 43/359 (11%)
Query: 11 YPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSLYSGQRRSIRE 70
YP +GGV + + E+ RL ++H V L +G + KV L R I
Sbjct: 9 YPPHRGGVARHLKEVVERLRRRHSVD--VLTYGTVATDVYSVKVPNVFGL-----RGISF 61
Query: 71 ALYFSAKVL-LKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWKEYWKKYL 129
+ S K++ L + +YD+I + F+ + +P+V+T H E+ K
Sbjct: 62 SFLASKKIVELHEERNYDLIHAH-YVGTTSFAGVLAKRKLGIPLVVTAHGSDLEFMSKL- 119
Query: 130 GNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA-LIPNGIDFKRIQRVKKLPQ 188
+G K R +VS KR S+G S +I NG+ + KK
Sbjct: 120 ----PLGRYFVKASLREADAVTAVSHFLAKRAISLGAKSVEVISNGVSTCGDRVSKKY-- 173
Query: 189 EYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENV 248
++F+G++ K K +D L + P+L+ LI GEG + EL NV
Sbjct: 174 ---IVFLGKVSKYKGIDEFLELARRF----PELEFLIAGEGNLR----------ELPSNV 216
Query: 249 KFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLIT 308
KF+ ++N + L L VLPSKREGFG+++LEAN+ VP L + +LI
Sbjct: 217 KFLGYVNPDDVLSRAL----ALVLPSKREGFGMVILEANSFSVP--ALGRKVGGIPELIR 270
Query: 309 HGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCI--KNARRYDWDNITQLTERLYERVL 365
G NGF+ + +++ + L L K + + A Y WD++ ERLY RVL
Sbjct: 271 DGKNGFLF-DSIDEAEKFLRVLLDLKVNAKVGALGKRVASLYSWDDVAIRYERLYRRVL 328
>pir||A75033 probable hexosyltransferase (EC 2.4.1.-) PAB0827 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458671|emb|CAB50158.1| (AJ248287)
GALACTOSYLTRANSFERASE or LPS BIOSYNTHESIS RFBU RELATED
PROTEIN [Pyrococcus abyssi]
Length = 371
Score = 101 bits (249), Expect = 1e-20
Identities = 112/387 (28%), Positives = 181/387 (45%), Gaps = 56/387 (14%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSIKLQKVGRGVS 59
++IA + D +P + GGV V+ + L K HEV ++ + N +LQK G +
Sbjct: 4 LKIALVSDWYFPKI-GGVAIHVHNLAIHLRKMGHEVSIVT-NALTNGKEGELQKYGIDLI 61
Query: 60 LYSGQRRSIREALYFS-----AKVLLKAKWDYDIIDCQQFPYLPCFSSKV---------- 104
G I++ + S + L++ +D++ Q + P +
Sbjct: 62 KVPGL---IKDGINLSMIAKSSNSLVEYLKGFDVVHAQH-AFTPLSLKSIPAGNKVGALT 117
Query: 105 ----HSI-LRNVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQK 159
HS+ N ++ + ++ Y+K YLG + +GI + K SVS L +
Sbjct: 118 LVTNHSVEFENFSILNGFSKMSYSYFKMYLGQV-KVGIGVSK---------ASVSFLRKF 167
Query: 160 RLRSIGIDSALIPNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVP 219
I IPNG++ +R + ++++VGRL K V+ L+ A+K ++
Sbjct: 168 TNAPI----VEIPNGVNIERFNGRGREWGTRNILYVGRLEPRKGVNYLISAMKFVEG--- 220
Query: 220 DLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGF 279
K+ I+G+G + L KL + + V+F+ F++ E ++ Y K S+VFVLPS E F
Sbjct: 221 --KLTIVGDGSMRKVLKMQAKKLGVEDKVEFLGFISQEELILLY-KKSEVFVLPSLSEAF 277
Query: 280 GIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPS-SLAEYIELSLSLGKKFK 338
GI++LEA AS VPVI + ++I G G I PP S +LA I LS K K
Sbjct: 278 GIVLLEAMASEVPVIGTS--VGGIPEII--GDAGIIVPPRDSKALANAINAILSNQKTAK 333
Query: 339 R----NCIKNARRYDWDNITQLTERLY 361
R + R Y WD + + TERLY
Sbjct: 334 RLGKLGRKRVERLYSWDVVAERTERLY 360
>gi|11499317 galactosyltransferase [Archaeoglobus fulgidus]
>gi|7433881|pir||G69465 probable hexosyltransferase (EC
2.4.1.-) AF1728 - Archaeoglobus fulgidus
>gi|2648819|gb|AAB89517.1| (AE000983)
galactosyltransferase [Archaeoglobus fulgidus]
Length = 356
Score = 100 bits (246), Expect = 3e-20
Identities = 104/307 (33%), Positives = 152/307 (48%), Gaps = 49/307 (15%)
Query: 83 KWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWH---EIWKEYWKKYLGNMGAIGIQI 139
K D DI P P FS LR P VIT+H EI ++Y + I +
Sbjct: 75 KIDGDIFHSHTPP--PFFSCS----LRKSPHVITYHCDIEIPEKYGRF------PIPRAL 122
Query: 140 EKLMSRLTSHHVS-----------VSKLTQKRLRSI-GIDSALIPNGIDFKRIQRVKKLP 187
KL+ R T +S +K + R + G D +IPNGI+ + V+
Sbjct: 123 SKLIIRRTDDMLSEALDRADAIVATTKSYAETSRLLAGRDYHVIPNGIELSEFEGVEA-E 181
Query: 188 QEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTEN 247
+E V+F+GRL K VD+LL+A+K + DV + + +IIG+G E+ L L +LE+ N
Sbjct: 182 KEPTVLFLGRLAATKGVDVLLKAMKHV--DV-EARCVIIGDGEERSSLERLARELEV--N 236
Query: 248 VKFISFLNDYEKLIAYLKSSKVFVLPS--KREGFGIIVLEANASGVPVITLDYPLNASRD 305
+F FL +K+I YL + + VLPS + E FGI++LEA A G PV D P RD
Sbjct: 237 AEFTGFL-PRKKVIEYLSRASLLVLPSLSRLEAFGIVLLEAMACGTPVAASDLP--GVRD 293
Query: 306 LITHGYNGFISPPNP-SSLAEYIELSLSLGKKFK------RNCIKNARRYDWDNITQLTE 358
+ + GF+ PP L+E I LS +K K R ++ +Y WD + +
Sbjct: 294 VASEA--GFVFPPGDYMRLSEIINEVLSDERKVKAIGESGRRIVR--EKYSWDVVVKSLI 349
Query: 359 RLYERVL 365
RLYE ++
Sbjct: 350 RLYESLI 356
>pir||D72511 probable hexosyltransferase (EC 2.4.1.-) APE2066 [similarity] -
Aeropyrum pernix (strain K1) >gi|5105764|dbj|BAA81076.1|
(AP000063) 392aa long hypothetical
N-acetylglucosaminyl-phosphatidylinositol biosynthetic
protein [Aeropyrum pernix]
Length = 392
Score = 97.1 bits (238), Expect = 3e-19
Identities = 72/260 (27%), Positives = 124/260 (47%), Gaps = 13/260 (5%)
Query: 111 VPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSI---GID 167
+P + T H I+ Y K L + +I + L+ + +SVS K + I +D
Sbjct: 129 LPRIATNHSIFLAYDKVALWRIASIVLPTRYLLPNAQAV-ISVSTAADKMVEGIVGDSVD 187
Query: 168 SALIPNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIG 227
+IPNG+D +R + V+F+GRL+ K +L+RA + + D++ D K+ I G
Sbjct: 188 RYIIPNGVDVERFKPSTPKADYPLVLFLGRLVWRKGAHVLVRAFRHVVDEIRDAKLYIGG 247
Query: 228 EGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPS-KREGFGIIVLEA 286
+G + + L+++ L NVK + + + EK Y S+ V +PS E FGI+ LE+
Sbjct: 248 KGEFEPIIKLLIARYGLENNVKMLGVVPESEKPSLY-SSAWVTAVPSIVNESFGIVALES 306
Query: 287 NASGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCIKNAR 346
+SG PV+ +D++ HG G + P S ++L ++ + AR
Sbjct: 307 LSSGTPVVASRQ--GGLKDVVKHGKTGLLVKPGSSKELAKALITLLQDSGLRKRMSEEAR 364
Query: 347 -----RYDWDNITQLTERLY 361
RYDW + ++Y
Sbjct: 365 KIVLERYDWRKVVPQILKVY 384
>pir||E70156 lipopolysaccharide biosynthesis-related protein homolog - Lyme
disease spirochete >gi|2688362|gb|AAC66815.1| (AE001150)
lipopolysaccharide biosynthesis-related protein
[Borrelia burgdorferi]
Length = 383
Score = 94.8 bits (232), Expect = 1e-18
Identities = 79/285 (27%), Positives = 143/285 (49%), Gaps = 34/285 (11%)
Query: 106 SILRNVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSR---LTSHHVSVSKLTQKRLR 162
++ N+P+V T H +W +Y+ YLG I+ +K+M + H + S ++R
Sbjct: 103 ALKHNIPIVHTSHTMW-DYYLHYLGIFKYF-IKPDKMMRKHYNKIKHFIYPSSKAKERYF 160
Query: 163 SIGIDSA---LIPNGIDFKRIQRVKKLPQEYD---------------VIFVGRLIKEKNV 204
+ +S+ +IPNG+D K +K L +E +IFVGR+ KEKN+
Sbjct: 161 QLSNNSSNYKIIPNGVDRKLF--IKTLSKEKKDEILKKHNIKQTDKIIIFVGRINKEKNI 218
Query: 205 DLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYL 264
+LL+ +K + + K+++IG+G E+ + K L + + I + +E++ Y
Sbjct: 219 NLLVTHLKDLLMQNNNYKLILIGKGSEEKEIKNFSIKHGLEKQILLIGTI-PWEEIYYYY 277
Query: 265 KSSKVFVLPSKREGFGIIVLEANASGVPVITL-DYPLNASRDLITHGYNGFISPPNPSSL 323
K S +F SK E + + V+EA +G+P I + DY +D+I G NGF+ +L
Sbjct: 278 KISDIFASLSKSEVYPMTVIEALTAGIPAILINDY---IYKDVIKEGINGFLI-KKYENL 333
Query: 324 AEYIELSL---SLGKKFKRNCIKNARRYDWDNITQLTERLYERVL 365
+ YI+ + + KKFK N K++ ++ T+ + Y ++
Sbjct: 334 SRYIDKVIKDDEILKKFKENAKKHSTKFSSYFFTKKIKNYYSEII 378
>pir||C71154 hypothetical protein PH0434 - Pyrococcus horikoshii
>gi|3256837|dbj|BAA29520.1| (AP000002) 336aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 336
Score = 92.4 bits (226), Expect = 7e-18
Identities = 97/363 (26%), Positives = 168/363 (45%), Gaps = 44/363 (12%)
Query: 11 YPFVKGGVEKRVYEIGTRLSKKHEVHWISLDW----GGNIPSIKLQKVGRGVSLYSGQRR 66
YP +GGV + V ++ LS++HEVH I+ G N+ +K+ + G R
Sbjct: 9 YPPHRGGVARHVKDLVDYLSREHEVHVITYGTVKGKGENVSYVKVPNI-------FGLRG 61
Query: 67 SIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWKEYWK 126
+ L V L K ++D+I + ++ + +P+V+T H ++
Sbjct: 62 TSFTLLASKLGVKLHKKLNFDLIHAH-YVGTTSYAGVLIKERTGLPLVVTAHGSDLDFTS 120
Query: 127 KY-LGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA-LIPNGIDFKRIQRVK 184
K LG+ I+ SH++ V + + +G ++ +IPN + +
Sbjct: 121 KLPLGSYYVKKSLIKANAVIAVSHYLGV------KAKMLGAENVKVIPNWVT-----KTG 169
Query: 185 KLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLEL 244
K EY + F+GRL + K V+ + KL P K ++ GEGP +L+ E
Sbjct: 170 KSRGEY-IAFIGRLTEYKGVEDFIELAKLF----PQEKFVVAGEGPLLKKLMK-----ES 219
Query: 245 TENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASR 304
+NVKF+ Y+ L +KV +LPSKREGFG+++LEAN+ VP +L + R
Sbjct: 220 PKNVKFLG----YKPSEDVLSKAKVLILPSKREGFGLVILEANSFKVP--SLGRRVGGIR 273
Query: 305 DLITHGYNGFISPPNPSSLAEYIE--LSLSLGKKFKRNCIKNARRYDWDNITQLTERLYE 362
++I G NG+ + EY++ L+ G+K + +R Y + + ++YE
Sbjct: 274 EIIRDGKNGYTFSALDEAY-EYLKELLNPKKGRKAGAISYRISRFYSMEESCKRILKVYE 332
Query: 363 RVL 365
V+
Sbjct: 333 EVV 335
>pir||F70441 capsular polysaccharide biosynthsis protein - Aquifex aeolicus
>gi|2983976|gb|AAC07522.1| (AE000749) capsular
polysaccharide biosynthsis protein [Aquifex aeolicus]
Length = 316
Score = 89.3 bits (218), Expect = 6e-17
Identities = 62/188 (32%), Positives = 108/188 (56%), Gaps = 12/188 (6%)
Query: 175 IDFKRIQRVKKLPQEYD-VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKY 233
ID R Q + + ++D +I VGRL +K +LRA KLI + DL +LIIGEG +K
Sbjct: 127 IDKIRKQADESINVDFDYIIAVGRLEDQKGYPYMLRAFKLISEKFKDLHLLIIGEGSKKN 186
Query: 234 RLLTLVSKLELTENVKFISF-LNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVP 292
++ L+ +L L V + + LN Y+ Y+K +K +++ S EGFG++++EA A G+P
Sbjct: 187 QVEKLIEELGLKNKVHLLGYQLNPYK----YIKRAKAYLMTSIYEGFGLVLVEAMALGIP 242
Query: 293 VITLDYPLNASRDLITHGYNGFISP-PNPSSLAEYIELSL---SLGKKFKRNCIKNARRY 348
VI D P A R+++ G G + P + ++ A+ +E L +L + + +N + A+ +
Sbjct: 243 VIAFDIP--AVREVLNDGKAGVLVPFGDINAFAKGLEKLLTDRNLREYYIKNGLIRAKDF 300
Query: 349 DWDNITQL 356
D + ++
Sbjct: 301 DISKLDKI 308
>pir||F64500 probable hexosyltransferase (EC 2.4.1.-) MJ1607 - Methanococcus
jannaschii >gi|1500505|gb|AAB99629.1| (U67601) LPS
biosynthesis protein, putative [Methanococcus
jannaschii]
Length = 390
Score = 87.8 bits (214), Expect = 2e-16
Identities = 65/194 (33%), Positives = 105/194 (53%), Gaps = 13/194 (6%)
Query: 175 IDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYR 234
I+F+R V+ E ++FVGRL +K ++ L+RA+ I + + K++I G G +
Sbjct: 196 INFRRSIGVQD--DEKMILFVGRLTYQKGIEYLIRAMPKILER-HNAKLVIAGSGDMRDY 252
Query: 235 LLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVI 294
L L +L + V F+ F+N + L KS+ V V+PS E FGI+ LEA A+G PV+
Sbjct: 253 LEDLCYQLGVRHKVVFLGFVNG-DTLKKLYKSADVVVIPSVYEPFGIVALEAMAAGTPVV 311
Query: 295 TLDYPLNASRDLITHGYNG-FISPPNPSSLAEYIELSLSLGKKFKRNCIKNAR-----RY 348
+ ++I H NG ++ P NP S+A ++ LS F+ + NA+ +Y
Sbjct: 312 VSS--VGGLMEIIKHEVNGIWVYPKNPDSIAWGVDRVLS-DWGFREYIVNNAKKDVYEKY 368
Query: 349 DWDNITQLTERLYE 362
WDNI + T +Y+
Sbjct: 369 SWDNIAKETVNVYK 382
>pir||E71699 capm protein (capM2) RP414 - Rickettsia prowazekii
>gi|3860971|emb|CAA14871.1| (AJ235271) CAPM PROTEIN
(capM2) [Rickettsia prowazekii]
Length = 338
Score = 87.8 bits (214), Expect = 2e-16
Identities = 60/186 (32%), Positives = 99/186 (52%), Gaps = 11/186 (5%)
Query: 170 LIPNGIDFKRIQRVKKLPQEYDVIFV-GRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGE 228
++PN I+ + K+ ++ VI V R + +K +D+ ++AIKL+KD +++V+I G
Sbjct: 142 ILPNMINITKNFVPNKIYKKVIVIGVLARFVAKKGIDVFIKAIKLLKDKQYNIQVVIGGN 201
Query: 229 GPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANA 288
G EK L+ LV KL L + + F ++ND + + K +F LPS E FGII+LEA
Sbjct: 202 GNEKDNLIALVHKLNLQDQISFTGWVNDKD---TFFKQIDIFCLPSLHEPFGIIILEAMQ 258
Query: 289 SGVPVITLDYPLNASRDLITHGYNGFISPPNP-SSLAE----YIELSLSLGKKFKRNCIK 343
+ VP+++ D ++++ H +G I LAE I+ L K K +K
Sbjct: 259 ASVPIVSTD--TEGPKEILKHLKDGLICKVGSIEDLAEKIIYLIDNPLQAAKFSKNAYLK 316
Query: 344 NARRYD 349
+ YD
Sbjct: 317 LKQNYD 322
>pir||E72354 probable hexosyltransferase (EC 2.4.1.-) TM0622 - Thermotoga
maritima (strain MSB8)
>gi|4981142|gb|AAD35706.1|AE001736_4 (AE001736)
lipopolysaccharide biosynthesis protein, putative
[Thermotoga maritima]
Length = 388
Score = 85.4 bits (208), Expect = 9e-16
Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 159 KRLRSIGIDSALIPNGIDFKR--IQRVKKLPQEYDVIF-VGRLIKEKNVDLLLRAIKLIK 215
K+L I + +I NGID ++ I + K++ ++ ++ V RL +EKN LL+RA
Sbjct: 163 KKLYGRKISTPVIYNGIDVQKFSIDQPKRVDRDKTILINVARLSREKNHALLVRAFSKAV 222
Query: 216 DDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSK 275
P+L++ ++G+G + + LV +L L E VKF +D +L L + +FVL S
Sbjct: 223 QSCPNLELWLVGDGELRRDIEELVKQLGLEEKVKFFGVRSDVPEL---LSQADIFVLSSD 279
Query: 276 REGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPP-NPSSLAE-YIELSLSL 333
EGFG++V EA A+G+PVI + +++ G G + PP + +LA+ +EL+
Sbjct: 280 YEGFGLVVAEAMAAGLPVIAT--AIGGIPEILEGGRAGILVPPKDVDALAKAIVELARDE 337
Query: 334 GKK-----FKRNCIKNARRYDWDNITQLTERLYERVL 365
K+ + R + A R+D + E+LY +L
Sbjct: 338 KKRAELSDYGRKLV--AERFDIRRTVREYEKLYLELL 372
>pir||F64175 hypothetical protein HI1698 (lsg locus) - Haemophilus influenzae
>gi|1574551|gb|AAC23344.1| (U32842) lipopolysaccharide
biosynthesis protein [Haemophilus influenzae Rd]
Length = 353
Score = 82.3 bits (200), Expect = 8e-15
Identities = 81/312 (25%), Positives = 150/312 (47%), Gaps = 27/312 (8%)
Query: 16 GGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSIKLQKVGRGVSLYSGQRR--SIREAL 72
GG E+ + L+K+ ++V +IS+ GGN P + V +++Y+ + S+++
Sbjct: 15 GGTERVSINVANALAKQGYDVSFISI--GGNKPFFQ---VDEKINIYAMNKLPYSLKKD- 68
Query: 73 YFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKV--HSILRNVPMVITWHEIWKEYWKKYLG 130
YFS L+ +++ Q L + S L V + I H +W+ Y + G
Sbjct: 69 YFSITKKLR-----ELVKELQLDTLIVVDGAIMLFSALALVNLNIK-HILWEHYSFNFTG 122
Query: 131 N--MGAIGIQIE-KLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRIQRVKKLP 187
N + +G + ++ + + L Q++ ++ I S PN + K ++ KL
Sbjct: 123 NRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIISIANPNTLLPKN--KLAKLE 180
Query: 188 QEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTEN 247
+ ++ VG L K D LL+ +++ PD + I+G G E+ L L L++ ++
Sbjct: 181 NK-TILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDS 239
Query: 248 VKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLI 307
V FI ND + Y +SS ++ LPS+ EG ++V+EA A G+P++ + + L+
Sbjct: 240 VNFIPRTND---VSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGV-KQLV 295
Query: 308 THGYNGFISPPN 319
H NGF+ N
Sbjct: 296 EHKENGFLCEQN 307
>pir||A75059 probable hexosyltransferase (EC 2.4.1.-) PAB0973 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458879|emb|CAB50366.1| (AJ248287) LPS BIOSYNTHESIS
RFBU RELATED PROTEIN [Pyrococcus abyssi]
Length = 390
Score = 82.3 bits (200), Expect = 8e-15
Identities = 104/394 (26%), Positives = 181/394 (45%), Gaps = 49/394 (12%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKH-EVHWISLDWGGN-IPSIKLQKVGRGV 58
M++ I YP GG+EK Y I L ++ EV I+ GN + +++ +V R
Sbjct: 1 MKLLMITPYFYP-EGGGLEKYAYMIARGLVERGWEVKVITASRKGNSLENLEGIEVIRLA 59
Query: 59 SLYSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQ-FPYLPCFSSKVHSILRN---VPMV 114
+ I L + K + + +I+ PY S+ V+++L+ P V
Sbjct: 60 PHFIVSNTPISFNLPLKLIKVFKEE-QFSVINAHTPVPYYADVSAWVNNVLKGSNKTPFV 118
Query: 115 ITWH-EIWKEYWK----KYLGNMGAIGIQIEKLMSRLTSHHVSVSKLT---QKRLRSIGI 166
+T+H ++ KE + YL N+ +++ + L+ ++ S K LR
Sbjct: 119 LTYHNDLVKEGFPLDKVAYLYNLS-----LQRGLLLLSDTIITPSPYCYYESKLLRRFKK 173
Query: 167 DSALIPNGIDFKR--------IQRVKKLPQEYDVI-FVGRLIK---EKNVDLLLRAIKLI 214
IP G+D +R + + LP+ ++ F+G + + K V LL+A K +
Sbjct: 174 KLIWIPPGVDTERYFPGKSYRLHSIYNLPRSAKIVMFIGTMNRGHAHKGVPYLLKAFKYV 233
Query: 215 KDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPS 274
V D ++++G G + L +++ V F ++ + + L + +SS V VLPS
Sbjct: 234 ATQVKDSYLVLVGRGDMIPEYKKMCMSLGISKRVIFTGYVEE-DILPEFYRSSDVIVLPS 292
Query: 275 K--REGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPP-NPSSLAEYI---- 327
+EGFG++++EA ASG PVI + + + +I +G G + PP +P LAE I
Sbjct: 293 TTVQEGFGMVLIEAGASGKPVIGTN--VGGIKHVIENGKTGILVPPKDPFRLAEAIVTLL 350
Query: 328 ---ELSLSLGKKFKRNCIKNARRYDWDNITQLTE 358
L+ +GK +R R Y WD I + TE
Sbjct: 351 TDDNLARKIGKTGRRLV---EREYSWDKIVEKTE 381
>pir||F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus
horikoshii >gi|3258282|dbj|BAA30965.1| (AP000007) 381aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 381
Score = 80.8 bits (196), Expect = 2e-14
Identities = 106/390 (27%), Positives = 179/390 (45%), Gaps = 40/390 (10%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSIKLQKVGR-GV 58
M+IA + D YP + GGV ++ + +L ++ HEV ++ N P+ K +++ R G+
Sbjct: 4 MKIALVSDWYYPKI-GGVATHMHNLAIKLRERGHEVGIVT----NNRPTGKEEELKRYGI 58
Query: 59 SLYS--GQRRSIREALYF----SAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVP 112
L G + S++ L + D+DII + P S K +N+
Sbjct: 59 ELIKIPGIISPFLDVNLTYGLKSSEELNEFLKDFDIIHSHH-AFTP-LSLKALKAGKNME 116
Query: 113 M--VITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSI-GIDSA 169
++T H I + K +G I + K + + ++VSK + + +
Sbjct: 117 KGTLLTTHSISFAHESKLWDTLG-FTIPLFKSYLKYSHRIIAVSKAAKSFIEHFTSVPVL 175
Query: 170 LIPNGIDFKRI------QRVK-KLPQEYDVI-FVGRLIKEKNVDLLLRAIKLIKDDVPDL 221
++PNG+D +R +++K K E +V+ +V R+ K +LL A I+D
Sbjct: 176 IVPNGVDDERFFPARDKEKIKAKFGLEGNVVLYVSRMSYRKGPHVLLNAFSKIEDAT--- 232
Query: 222 KVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPS-KREGFG 280
++++G G L L + V F+ ++ D + L + + VFVLPS E FG
Sbjct: 233 -LVMVGNGEMLPFLKAQTKFLGIENKVVFMGYVPD-DILPEVFRMADVFVLPSISSEAFG 290
Query: 281 IIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPP-NPSSLAEYIELSL---SLGKK 336
I++LEA ASGVP+I D + ++I G + PP N L E IE L L K
Sbjct: 291 IVILEAMASGVPIIATD--VGGIPEVIKENSAGLLVPPGNELKLREAIEKLLKNEELRKW 348
Query: 337 FKRNCIKNA-RRYDWDNITQLTERLYERVL 365
+ N ++ +Y W+ I ER+Y VL
Sbjct: 349 YGNNGRRSVEEKYSWNKIVVKIERIYNEVL 378
>pir||S76126 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001478|dbj|BAA10104.1| (D63999) hypothetical
protein [Synechocystis sp.]
Length = 409
Score = 80.0 bits (194), Expect = 4e-14
Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 28/275 (10%)
Query: 110 NVPMVITWHEIWKEYWKKY-LGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDS 168
++P+V ++H +Y + Y LG + + ++ KL ++ S + L + GI+
Sbjct: 138 HIPLVASYHTHLPQYLQHYGLGALEGVLWELLKLAHNQAELNLCTSSAMVQELVNHGIER 197
Query: 169 A-LIPNGID-------FKRIQRVKKLPQEYD----VIFVGRLIKEKNVDLLLRAIKLIKD 216
L G+D K Q +KL Q + ++VGR+ EK +D IK + +
Sbjct: 198 VDLWQRGVDTELFQPHLKSAQMRQKLSQGHPDDPLFLYVGRVSAEKQID----EIKPVLE 253
Query: 217 DVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR 276
+P ++ I+G+GP + L + N F ++ E L A S+ F+ PS+
Sbjct: 254 AIPQARLAIVGDGPNRKNLEAHFAGT----NTYFAGYMQGLE-LAAAFASADAFIFPSRT 308
Query: 277 EGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFI-SPPNPSSLAEYIELSLSL-- 333
E G+++LEA A+G PV+ D++T G NG++ P + + + +S
Sbjct: 309 ETLGLVLLEAMAAGCPVVAA--ASGGILDIVTDGENGYLFDPAVAGGVVQATQRLMSAPG 366
Query: 334 -GKKFKRNCIKNARRYDWDNITQLTERLYERVLYG 367
+ ++N + A R+ W T+ Y+ V YG
Sbjct: 367 DRELLRQNARQEAERWGWPAATRQLVDYYQLVAYG 401
>pir||F70346 mannosyltransferase C - Aquifex aeolicus >gi|2983151|gb|AAC06753.1|
(AE000693) mannosyltransferase C [Aquifex aeolicus]
Length = 368
Score = 79.6 bits (193), Expect = 5e-14
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 157 TQKRLRSIGIDSALIPNGIDFKRI------QRVKKLPQEYD-----VIFVGRLIKEKNVD 205
T K+L + +IP G++ KR+ ++ K + + V+ +GRL++ K
Sbjct: 148 TSKQLEGFRNKAVVIPLGLNPKRLMSDYVDEKFKDFIELKNKGRKIVLSIGRLVEYKGYK 207
Query: 206 LLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLK 265
L+ A K I +++ ++I G GP L + L L E V +N+ Y+K
Sbjct: 208 YLIEAAKYINNNI---SIVIAGSGPLFQSLEEKIETLNLKEKVFLFGRINNVS---LYMK 261
Query: 266 SSKVFVLPS--KREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGF-ISPPNPSS 322
+ VF LPS + E FG++++EA G P+IT D + + +G G + P +P +
Sbjct: 262 NCDVFCLPSITRNEAFGLVLVEALYFGKPLITTDVEGSGISYVNQNGITGLVVKPKDPKA 321
Query: 323 LAEYIELSL---SLGKKFKRNCIKNARRYDWDNITQLTERLYERVL 365
LAE I L +L K+F N K + ++ NI LYE VL
Sbjct: 322 LAEAINKILKNENLYKQFSENAKKRFKEFEISNIGDKILNLYEEVL 367
>emb|CAB09632.1| (Z96801) hypothetical protein MLCL581.14c [Mycobacterium leprae]
Length = 374
Score = 79.2 bits (192), Expect = 7e-14
Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 24/237 (10%)
Query: 140 EKLMSRLTSHHVSVSKLTQK-RLRSIGIDSALIPNGIDFKRIQRVKKLPQE----YDVIF 194
EK++ R ++VS L ++ ++ ++G D+ IPNG++ + +L V+F
Sbjct: 139 EKIIGR-----IAVSDLARRWQMEALGSDAVEIPNGVNVDSLSSAPQLAGYPRLGKTVLF 193
Query: 195 VGRLIK-EKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLE-LTENVKFIS 252
+GR + K + +LL A+ + + D+++LI+G G E+ L S+ L E+++F+
Sbjct: 194 LGRYDEPRKGMSVLLDALPGVMECFDDVQLLIVGRGDEEQ----LRSQAGGLVEHIRFLG 249
Query: 253 FLNDYEKLIAYLKSSKVFVLPS-KREGFGIIVLEANASGVPVITLDYPLNASRDLITHGY 311
++D K A ++S+ V+ P+ E FGI+++EA A+G PV+ D L+A R ++ G
Sbjct: 250 QVDDAGKAAA-MRSADVYCAPNIGGESFGIVLVEAMAAGTPVVASD--LDAFRRVLRDGE 306
Query: 312 NGFISPPNPS-SLAEYIELSLS---LGKKFKRNCIKNARRYDWDNITQLTERLYERV 364
G + P S +LA+ + L L +++ + RRYDW + R+YE V
Sbjct: 307 VGHLVPAGDSAALADALVALLRNDVLRERYVAAGAEAVRRYDWSVVASQIMRVYETV 363
>pir||B75520 probable lipopolysaccharide biosynthesis protein - Deinococcus
radiodurans (strain R1)
>gi|6458126|gb|AAF10022.1|AE001903_10 (AE001903)
lipopolysaccharide biosynthesis protein, putative
[Deinococcus radiodurans]
Length = 395
Score = 78.8 bits (191), Expect = 9e-14
Identities = 54/183 (29%), Positives = 97/183 (52%), Gaps = 11/183 (6%)
Query: 186 LPQEYD-VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLEL 244
+PQ+ V+++GRL EKN+D +L A + P+L++L++G+GP + ++
Sbjct: 203 IPQDAPLVVYLGRLAPEKNLDTMLAAFAQARTRRPELRMLVVGDGPGRED-----AEAGA 257
Query: 245 TENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASR 304
E V F + Y ++ L ++ F+ S E + ++EA A+G P++ P A+
Sbjct: 258 PEGVTFTGAV-PYVRVPEALAAADAFLTASTSEVLPMSMIEALAAGAPLVAAHSP--AAL 314
Query: 305 DLITHGYNGFISPPNPSSLAEYI--ELSLSLGKKFKRNCIKNARRYDWDNITQLTERLYE 362
DLI G+NG + P P +LA + L+ + + + ++AR+YD Q E +YE
Sbjct: 315 DLIAEGHNGTVREPTPEALATGLLQVLAPATLPRMQHEARESARQYDLPVRAQALEEVYE 374
Query: 363 RVL 365
RV+
Sbjct: 375 RVI 377
>emb|CAB70927.1| (AL137778) putative sugar transferase [Streptomyces coelicolor
A3(2)]
Length = 387
Score = 78.8 bits (191), Expect = 9e-14
Identities = 67/239 (28%), Positives = 126/239 (52%), Gaps = 19/239 (7%)
Query: 139 IEKLMSRLTSHHVSVSKLTQKRL-RSIGIDSALIPNGIDFKRIQRVKKLPQ-EYDVI-FV 195
+EK+ +R ++VS+ ++ L +G D+ +IPNG+D + P+ + D I F+
Sbjct: 138 LEKISAR-----IAVSEYARRTLVEHLGGDAVVIPNGVDVDFFADAEPKPEWQGDTIGFI 192
Query: 196 GRLIK-EKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFL 254
GR+ + K + +L+RA+ I P ++L+ G G E+ + +L EL V+F+ +
Sbjct: 193 GRIDEPRKGLPVLMRALPAILAARPQTRLLVAGRGDEEEAVESLPK--ELRSRVEFLGMI 250
Query: 255 NDYEKLIAYLKSSKVFVLPSKR-EGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNG 313
+D +K +L+S ++V P+ E FGI+++EA ++G PV+ D L+A ++ G G
Sbjct: 251 SDEDKA-RFLRSVDLYVAPNTGGESFGIVLVEAMSAGAPVLASD--LDAFAQVLDQGAAG 307
Query: 314 FISP-PNPSSLAEYIELSLSLGKK---FKRNCIKNARRYDWDNITQLTERLYERVLYGS 368
+ P + +LAE L+ ++ + + RR+DW + +YE V G+
Sbjct: 308 ELFPNEDADALAEAAVRLLADPERRAALRERGSAHVRRFDWSTVGADILSVYETVTAGA 366
>pir||A70571 probable hexosyltransferase (EC 2.4.1.-) Rv2610c [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|2104303|emb|CAB08632.1| (Z95387) hypothetical
protein Rv2610c [Mycobacterium tuberculosis]
Length = 378
Score = 78.4 bits (190), Expect = 1e-13
Identities = 90/330 (27%), Positives = 162/330 (48%), Gaps = 37/330 (11%)
Query: 55 GRGVSL-YSGQRRSIREALYFSAKVLLKAKW----DYDIIDCQQFPYLPCFSSKVHSILR 109
GR V + Y+G +R KV KW D+D++ + P P S +I
Sbjct: 55 GRAVPIPYNGSVARLRFGPATHRKV---KKWLAHGDFDVLHLHE-PNAPSLSMLALNIAE 110
Query: 110 NVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQK-RLRSIGIDS 168
P+V T+H + + G + EK++ R ++VS L ++ ++ ++G D+
Sbjct: 111 G-PIVATFHTSTTKSLTLTVFQ-GILRPMHEKIVGR-----IAVSDLARRWQMEALGSDA 163
Query: 169 ALIPNGID---FKRIQRVKKLPQE-YDVIFVGRLIK-EKNVDLLLRAIKLIKDDVPDLKV 223
IPNG+D F R+ P++ V+F+GR + K + +LL A+ + PD+++
Sbjct: 164 VEIPNGVDVDSFASAARLDGYPRQGKTVLFLGRYDEPRKGMAVLLDALPKVVQRFPDVQL 223
Query: 224 LIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR-EGFGII 282
LI+G G + +L +L +++F+ ++D K A ++S+ V+ P+ E FGI+
Sbjct: 224 LIVGHG-DADQLRGQAGRL--AAHLRFLGQVDDAGKASA-MRSADVYCAPNTGGESFGIV 279
Query: 283 VLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNP-----SSLAEYIELSLS---LG 334
++EA A+G V+ D L+A R ++ G G + P +P ++LA+ + L L
Sbjct: 280 LVEAMAAGTAVVASD--LDAFRRVLRDGEVGHLVPVDPPDLQAAALADGLIAVLENDVLR 337
Query: 335 KKFKRNCIKNARRYDWDNITQLTERLYERV 364
+++ RRYDW + R+YE V
Sbjct: 338 ERYVAAGNAAVRRYDWSVVASQIMRVYETV 367
>pir||G70961 probable hexosyltransferase (EC 2.4.1.-) Rv0225 [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|1871598|emb|CAB06992.1| (Z92669) hypothetical
protein Rv0225 [Mycobacterium tuberculosis]
Length = 384
Score = 78.0 bits (189), Expect = 2e-13
Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 14/224 (6%)
Query: 118 HEIWKEYWKKYLGNMGAIGIQIEKLMS---RLTSHHVSVSKLTQKRLRSIGIDS---ALI 171
H +E W MG +G +E ++S + +V+VS + + L ++G+DS A++
Sbjct: 121 HHCHREQWPVAGRMMGRLGWYVESMLSPRLHRRNQYVTVSLPSARDLIALGVDSERIAVV 180
Query: 172 PNGIDFKRIQRVK--KLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEG 229
NG+D + + P V+ + RL+ K ++ L A+ ++ +P L + I+G G
Sbjct: 181 RNGLDEAPSPTLSGPRAPTPR-VVVLSRLVPHKQIEDALAAVAELQPRIPGLHLDIVGGG 239
Query: 230 PEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANAS 289
+ RL+ V +L++ + V F ++D K L+SS V +LPS++EG+G+ V+EA
Sbjct: 240 WWRQRLVDHVHRLDIADAVTFHGHVDDVTK-HHVLQSSWVHLLPSRKEGWGLAVIEAAQH 298
Query: 290 GVPVITLDYPLNAS-RDLITHGYNGFISPPNPSSLAEYIELSLS 332
GVP T+ Y + D I G G I + + L ++E LS
Sbjct: 299 GVP--TIGYRSSGGLADSIVDGVTG-ILVDDRAELVAWLEQLLS 339
>gb|AAG18700.1| (AE004975) LPS biosynthesis protein; Lpb [Halobacterium sp. NRC-1]
Length = 338
Score = 77.3 bits (187), Expect = 3e-13
Identities = 64/230 (27%), Positives = 111/230 (47%), Gaps = 25/230 (10%)
Query: 76 AKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWKEYWKKYLGNMGAI 135
AK L A D+D++ Y + + L P+ IT H ++ + ++L +
Sbjct: 53 AKFLRNAD-DFDVVHAHSHLYFSTNLAALKRRLGETPLAITNHGLYSQNAPEWLFDAYL- 110
Query: 136 GIQIEKLMSRLTSHHVSV----SKLTQKRLRSIGIDSAL--IPNGIDFKRIQRVKKLPQE 189
K + R T + V + ++R+R G+DS + +PNG+D +R
Sbjct: 111 -----KTVGRWTFNQADVVFCYTDEDRERVREFGVDSRIEVVPNGVDTERFTPDGPTSDL 165
Query: 190 YD-----VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLEL 244
D V+FVGRL++ K ++A+ + +D+ D+K+ ++G+GP + L +
Sbjct: 166 IDHDGPVVLFVGRLVEGKRPQDAVKAVSRVAEDM-DVKLYVVGDGPMREELEEMSG---- 220
Query: 245 TENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVI 294
E F+ L Y+++ A ++ V VLPS+ EG VLE ASGVPV+
Sbjct: 221 -EETVFLGQL-PYDEMPAVYRAGDVLVLPSRAEGLPRTVLEGFASGVPVV 268
>gb|AAB08106.1| (U68035) HepB [Anabaena sp.]
Length = 389
Score = 76.9 bits (186), Expect = 4e-13
Identities = 60/201 (29%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 170 LIPNGIDFKRIQ---------RVKKLPQEYDVIFVGR-LIKEKNVDLLLRAIKLIKDDVP 219
+IP G++ + Q + P+ ++F R L+ VD LL+A+ +IK +P
Sbjct: 184 IIPGGVNIDKFQPNLSRQQARQQLNWPESRPILFTSRRLVHRVGVDKLLQALAIIKPKLP 243
Query: 220 DLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR-EG 278
D+ + I G G + L +L L NVKF+ FL D + IAY +++ + V+PS+ EG
Sbjct: 244 DIWLAIAGRGHLQTTLEKQAQELGLENNVKFLGFLPDEQLPIAY-QAANLTVMPSQSFEG 302
Query: 279 FGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFI-SPPNPSSLAEYIELSL--SLGK 335
FG+ + E+ A G PV+ P+ +++T I + P +++AE I L + K
Sbjct: 303 FGLAITESLACGTPVLCT--PIGGMPEILTPFSPQLITASPEATAIAEKIAQILLEQIPK 360
Query: 336 KFKRNCIKNA-RRYDWDNITQ 355
+ C + A +DW I Q
Sbjct: 361 PSREECRQYAVTNFDWQKIAQ 381
>emb|CAB57789.1| (AJ250131) HepD protein [Anabaena PCC7120]
Length = 391
Score = 76.9 bits (186), Expect = 4e-13
Identities = 60/201 (29%), Positives = 101/201 (49%), Gaps = 18/201 (8%)
Query: 170 LIPNGIDFKRIQ---------RVKKLPQEYDVIFVGR-LIKEKNVDLLLRAIKLIKDDVP 219
+IP G++ + Q + P+ ++F R L+ VD LL+A+ +IK +P
Sbjct: 184 IIPGGVNIDKFQPNLSRQQARQQLNWPESRPILFTSRRLVHRVGVDKLLQALAIIKPKLP 243
Query: 220 DLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR-EG 278
D+ + I G G + L +L L NVKF+ FL D + IAY +++ + V+PS+ EG
Sbjct: 244 DIWLAIAGRGHLQTTLEKQAQELGLENNVKFLGFLPDEQLPIAY-QAANLTVMPSQSFEG 302
Query: 279 FGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFI-SPPNPSSLAEYIELSL--SLGK 335
FG+ + E+ A G PV+ P+ +++T I + P +++AE I L + K
Sbjct: 303 FGLAITESLACGTPVLCT--PIGGMPEILTPFSPQLITASPEATAIAEKIAQILLEQIPK 360
Query: 336 KFKRNCIKNA-RRYDWDNITQ 355
+ C + A +DW I Q
Sbjct: 361 PSREECRQYAVTNFDWQKIAQ 381
>pir||H83539 probable glycosyl transferase PA0842 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946738|gb|AAG04231.1|AE004519_2 (AE004519) probable
glycosyl transferase [Pseudomonas aeruginosa]
Length = 406
Score = 76.9 bits (186), Expect = 4e-13
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 16/202 (7%)
Query: 161 LRSIGIDSALI-PNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVP 219
L S G+DS L P+ D + +R Q+ V+ VGRL EKN+ LL + + P
Sbjct: 176 LLSRGVDSQLFHPSRRDPELRRRWGLGEQDIAVLHVGRLAAEKNLGLLGGTFRALCAAHP 235
Query: 220 DLKV--LIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKRE 277
LK+ +++G+GPE+ L + +L E + + E L A+ S +F+ PS E
Sbjct: 236 QLKLRLVLVGDGPERKHL-----ERDLPEAL--FCGVQRGETLAAHYASGDLFLFPSLSE 288
Query: 278 GFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSS----LAEYIELSLSL 333
FG +VLEA A+G+ V+ D A+ I HG+NG ++ P S +A ++
Sbjct: 289 TFGNVVLEAQAAGLAVVAFDQA--AAGQHIRHGHNGVLAAPGDKSGFVEVASWLLDDQER 346
Query: 334 GKKFKRNCIKNARRYDWDNITQ 355
++ + N ++A R WD+I +
Sbjct: 347 LRRVRLNARQHASRQGWDSIVE 368
>gb|AAC60772.1| (U46859) WbcI [Yersinia enterocolitica (type 0:8)]
Length = 358
Score = 76.5 bits (185), Expect = 5e-13
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 131 NMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGI-----DFKRIQRVKK 185
N G + I + L++R + ++K + L G D L+ GI F ++KK
Sbjct: 124 NKGFLNI-LRLLLTRGVGKRIFMNKYEKNLL---GCDGDLVLGGIGVDIESFCYSYKIKK 179
Query: 186 LPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEG-PEKYRLLTLVS---- 240
++ ++++VGRL+++K + ++ IK +K D + ++G+ P LT
Sbjct: 180 CSRKIELLYVGRLVEDKGIFYIIELIKHLKLAGVDFTLNVVGDTYPANPSSLTEDDIANL 239
Query: 241 KLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPL 300
K E E++ F +L+D + A + V +L SK EGF ++V+EANA G+P I Y +
Sbjct: 240 KAEFEEDIIFHGYLSDLRHIYA---KTDVLLLLSKHEGFPVVVMEANACGIPAIC--YAV 294
Query: 301 NASRDLITHGYNGFI 315
D I HG NGF+
Sbjct: 295 PGCIDAIEHGVNGFL 309
>gb|AAF14309.1| (U45308) SqdX [Synechococcus PCC7942]
Length = 377
Score = 76.1 bits (184), Expect = 6e-13
Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 28/273 (10%)
Query: 110 NVPMVITWHEIWKEYWKKY-LGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDS 168
NVP+V ++H +Y + Y LG + + ++ KL + ++ S + L GI+
Sbjct: 107 NVPLVASYHTHLPKYLEHYGLGVLEGVLWELLKLAHNQAAINLCTSTAMVQELTDHGIEH 166
Query: 169 ALI-PNGIDFKRIQRVKKLPQEYD-----------VIFVGRLIKEKNVDLLLRAIKLIKD 216
+ G+D + + D +++VGRL EK +D L + I D
Sbjct: 167 CCLWQRGVDTETFRPDLATAAMRDRLSGGKPTAPLLLYVGRLSAEKQIDRL----RPILD 222
Query: 217 DVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR 276
P+ + ++G+GP + L L + + +FI +L+ E+L A S+ FV PS+
Sbjct: 223 ANPEACLALVGDGPHRAELEQLFAGTQ----TQFIGYLHG-EQLGAAYASADAFVFPSRT 277
Query: 277 EGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPP--NPSSLAEYIELSLSLG 334
E G+++LEA A+G PV+ + D+++ G NGF+ P ++A L +
Sbjct: 278 ETLGLVLLEAMAAGCPVVAAN--SGGIPDIVSDGINGFLFDPEDEQGAIAAIQRLLANPA 335
Query: 335 KK--FKRNCIKNARRYDWDNITQLTERLYERVL 365
++ ++ + A R+ W+ T+ + Y VL
Sbjct: 336 EREILRQAARQEAERWSWNAATRQLQDYYCEVL 368
>pir||C75423 probable mannosyltransferase - Deinococcus radiodurans (strain R1)
>gi|6458966|gb|AAF10795.1|AE001970_10 (AE001970)
mannosyltransferase, putative [Deinococcus radiodurans]
Length = 402
Score = 75.7 bits (183), Expect = 8e-13
Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 111 VPMVITWHEIWKEYWKKYLGNMGAIGIQIE---KLMSRLTSHHVSV---SKLTQKRLRSI 164
VP V T+H + Y Y+ M + + K++ RL +V + T LR
Sbjct: 107 VPHVATYHTHLEAY-THYVPGMTQLNRAVHFMPKVVGRLYGEADAVITPTAGTLDTLRQA 165
Query: 165 GI-DSALIPNGIDFKRIQRVKKL-----PQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDV 218
GI D+ +IP ID ++ + P ++ VGRL +EK DL+L + D+
Sbjct: 166 GITDAVVIPTSIDPAVLEAAPPIASPWPPGTRRLLTVGRLAREKRFDLVLDTLA----DL 221
Query: 219 PDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREG 278
P ++I+GEGPE+ L +L + E+V F+ + + ++ AY + +++FV S E
Sbjct: 222 PGAHLVILGEGPERTHLEDHAQRLGVAEHVTFVG-VRPWTEIGAYYRLAELFVFASDTET 280
Query: 279 FGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPP 318
G+++ EA GVPV+ + + + GY+G+++ P
Sbjct: 281 QGLVLQEAQLMGVPVVAVG--ARGTLTGVQSGYSGYLTAP 318
>pir||C72340 probable hexosyltransferase (EC 2.4.1.-) TM0744 - Thermotoga
maritima (strain MSB8)
>gi|4981269|gb|AAD35825.1|AE001744_15 (AE001744)
conserved hypothetical protein [Thermotoga maritima]
Length = 406
Score = 74.1 bits (179), Expect = 2e-12
Identities = 68/274 (24%), Positives = 136/274 (48%), Gaps = 27/274 (9%)
Query: 111 VPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMS----RLTSHHVSVSKLTQKRLRSIGI 166
+P V T+H + EY + Y+ ++ + S +T+ ++ ++ ++ L S G+
Sbjct: 106 LPHVHTYHTLLPEY-RHYIPKPFTPPKRLVEHFSAWFCNMTNVVIAPTEDIKRELESYGV 164
Query: 167 DSAL--IPNGIDFKR--IQRVKKLPQEYD------VIFVGRLIKEKNVDLLLRAIKLIKD 216
+ +P GI+ ++ ++ ++L ++++ V++ GR+ KEKN+D LLR + +
Sbjct: 165 KRPIEVLPTGIEVEKFEVEAPEELKRKWNPEGKKVVLYAGRIAKEKNLDFLLRVFESL-- 222
Query: 217 DVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKR 276
+ P + +++G+GPE+ + + L ++K F+ ++++ Y K VFV SK
Sbjct: 223 NAPGIAFIMVGDGPEREEVEEFAKEKGL--DLKITGFV-PHDEIPLYYKLGDVFVFASKT 279
Query: 277 EGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNG-FISPPNPSSLAEYIELSLSLGK 335
E G+++LEA ASG+PV+ L + +D++ + I N AE I+ L +
Sbjct: 280 ETQGLVLLEALASGLPVVALKW--KGVKDVLKNCEAAVLIEEENERLFAEKIKHILKNDR 337
Query: 336 KFKRNCIKNAR--RYDW--DNITQLTERLYERVL 365
+ K R +W D Q E +Y R +
Sbjct: 338 LREELSTKGREFVRKEWSVDRFVQRLEEIYTRAI 371
>pir||T34704 probable transferase - Streptomyces coelicolor
>gi|3169038|emb|CAA19236.1| (AL023702) putative
transferase [Streptomyces coelicolor A3(2)]
Length = 697
Score = 73.7 bits (178), Expect = 3e-12
Identities = 56/205 (27%), Positives = 99/205 (47%), Gaps = 16/205 (7%)
Query: 165 GIDSALIPNGIDFKRIQR---VKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDL 221
GI IPN + +Q +K+ V+ GR+ K DLL+RA + D+ PD
Sbjct: 179 GITVVGIPNSVPRPSVQPSDCTRKI-----VVSAGRMHHVKRYDLLIRAFGSLADEFPDW 233
Query: 222 KVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGI 281
++ I G+G E +L TLV++L L+ + + + + + + S E FG+
Sbjct: 234 QLRIYGDGGEAGKLRTLVTELGLSGRA---LLMGGFSPIDSEWAKGSIAAVTSSAESFGM 290
Query: 282 IVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRN- 340
++EA G+PV++ D P+ R++++ G +GF+ P S + L + +R+
Sbjct: 291 TLVEAMRCGLPVVSTDCPV-GPREILSDGEDGFLVPNGQVSGIAWGLRRLMADEVLRRDM 349
Query: 341 ---CIKNARRYDWDNITQLTERLYE 362
++NA RYD + RL+E
Sbjct: 350 GEAALRNAARYDPAAVADRYVRLFE 374
>gb|AAK41259.1| Glycogen synthase [Sulfolobus solfataricus]
Length = 566
Score = 73.4 bits (177), Expect = 4e-12
Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 11/158 (6%)
Query: 192 VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLL--TLVSKLELTENVK 249
V+F GRL+ +K VDLLLRA+K + +++ + ++LI G Y LL + E+ +N++
Sbjct: 349 VLFTGRLVYQKGVDLLLRAMKTVVNEINNARLLIFGLPSGDYNLLWDIIERASEIKDNIR 408
Query: 250 FISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLI-- 307
I D + + S VFV+PS+ E FGI +EA A G+PVI Y + R+ +
Sbjct: 409 LIVGRMDLDLYKLFHYVSSVFVIPSRWEPFGINSIEAMAMGLPVIA--YSVGGLRETVVD 466
Query: 308 -----THGYNGFISPPNPSSLAEYIELSLSLGKKFKRN 340
+ I P + LA I ++L L + + N
Sbjct: 467 IREDKNNATGLLIKPESIDELARAIRIALYLSEASELN 504
>dbj|BAB06407.1| (AP001516) alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol
monomannoside transferase [Bacillus halodurans]
Length = 381
Score = 73.4 bits (177), Expect = 4e-12
Identities = 76/283 (26%), Positives = 125/283 (43%), Gaps = 23/283 (8%)
Query: 95 PYLPCFSSKVHSILRNVPMVITWHEIWKEYWKKY-LGNMGAIGIQIEKLMSRLTSHHVSV 153
P+ S H +PMV ++H + Y Y L M A + K +
Sbjct: 94 PFNVGLSGLQHGKKYGIPMVGSYHTHFDHYLHYYKLQFMSAWLWKYVKWFHQPFERTFVP 153
Query: 154 SKLTQKRLRSIGIDS-ALIPNGIDFKRIQ--------RVKKLPQEYDVI-FVGRLIKEKN 203
S T + L+ G AL G+D +R + LP++ V+ +VGRL EK+
Sbjct: 154 SVETMRHLQKHGFQRLALWTRGVDCERFHPKQRHRSYAINLLPKDKAVLLYVGRLAPEKD 213
Query: 204 VDLLLRAIKLIKDDVPD-LKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIA 262
+ L+ + L+ ++ + ++ +I+G+GP + K + NV F +L E A
Sbjct: 214 LATLVAIMSLLPRELNEKIQWMIVGDGPSLPEM-----KKQCPSNVTFTGYLKGEELAAA 268
Query: 263 YLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSS 322
Y S+ +FV PS E FG +VLEA ASG P I D +++ HG +G I +
Sbjct: 269 YA-SADLFVFPSATETFGNVVLEAFASGTPAIVAD--RGGVTEIVEHGKSGMICKAGDAH 325
Query: 323 LAEYIELSLSLGKKFKRNCIKNARRYDWDNITQLTERLYERVL 365
L + + + AR+Y +TQ ER+++ +L
Sbjct: 326 TFIQAIEHLLMNRSKRAEMGYEARQY---ALTQSWERIFDDLL 365
>gb|AAD46732.1|AF078736_12 (AF078736) putative glycosyl transferase [Escherichia coli]
Length = 374
Score = 73.0 bits (176), Expect = 5e-12
Identities = 96/384 (25%), Positives = 167/384 (43%), Gaps = 44/384 (11%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLS-KKHEVHWISLDWGGNIPSIK-LQKVGRGV 58
M+I YI + GG E + ++ ++ + H+V+ I L I +K Q +
Sbjct: 1 MKIVYIITGL---TCGGAEHLMTQLADQMFIRGHDVNIICLT---GISEVKPTQNINIHY 54
Query: 59 SLYSGQRRSIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWH 118
RS AL+ K+++ K DII F + FS + ++ VP++ T H
Sbjct: 55 VNMDKNFRSFFRALFQVKKIIVALK--PDIIHSHMF-HANIFSRFIRMLIPAVPLICTAH 111
Query: 119 EIWKEYWKKYLGNMGAIGIQIEKLMSRLTSH------HVSVSKLTQKRLRSIGIDSALIP 172
K GN ++ ++ +T++ +++ + + + I + +
Sbjct: 112 N------KNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFINT 165
Query: 173 NGIDF-----KRIQRVKKLPQEYDVIF-VGRLIKEKNVDLLLRAIKLI----KDDVPDLK 222
N DF K+ + L V+ VGRL++ K+ LL AI + + D
Sbjct: 166 NKFDFDINVRKKTRDAFNLKDSTAVLLAVGRLVEAKDYPNLLNAINHLILSKTSNCNDFI 225
Query: 223 VLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGII 282
+LI G+G + +LL LV +L L + V F+ +D ++L+ ++ +FVL S+ EGFG++
Sbjct: 226 LLIAGDGALRNKLLDLVCQLNLVDKVFFLGQRSDIKELMC---AADLFVLSSEWEGFGLV 282
Query: 283 VLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKRNCI 342
V EA A PV+ D + + +N I N LAE I +L + ++
Sbjct: 283 VAEAMACERPVVATD---SGGVKEVVGPHNDVIPVSNHILLAEKIAETLKIDDNARKIIG 339
Query: 343 KNARRYDWDNITQLT-----ERLY 361
R Y N + T ERLY
Sbjct: 340 MKNREYIVSNFSIKTIVSEWERLY 363
>dbj|BAB07431.1| (AP001519) unknown conserved protein [Bacillus halodurans]
Length = 395
Score = 72.6 bits (175), Expect = 7e-12
Identities = 61/175 (34%), Positives = 92/175 (51%), Gaps = 22/175 (12%)
Query: 171 IPNGIDFKR-----------IQRVKKLPQEYDVI-FVGRLIKEKNVDLLLRAIKLIKDDV 218
IPNG+D KR I+R +LP E +I F G + K K + LL A++ +K
Sbjct: 181 IPNGVDDKRFAPVDCTTKRAIRRNLELPVERVLILFAGAINKRKGIVDLLDAVQKVKTK- 239
Query: 219 PDLKVLIIGEGPEKYRLLTLVSKLELT-ENVKFI--SFLNDYEKLIAYLKSSKVFVLPSK 275
++I G E V ++ T + +K I + D EK Y+ +S +FVLPS
Sbjct: 240 NHYSLVICGPILEDINFEERVQEINKTNKKIKIIYKGVVTDIEK---YMAASDIFVLPSY 296
Query: 276 REGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSS-LAEYIEL 329
EG ++LEA ++G+ +IT D + SRD++ G NGF+ P N S LA+ +EL
Sbjct: 297 SEGLPNVLLEAGSTGLALITTD--IGGSRDIVIDGRNGFVIPTNSSDLLAKKMEL 349
>pir||C70859 probable hexosyltransferase (EC 2.4.1.-) Rv3032 [similarity] -
Mycobacterium tuberculosis (strain H37RV)
>gi|2791630|emb|CAA16117.1| (AL021287) hypothetical
protein Rv3032 [Mycobacterium tuberculosis]
Length = 414
Score = 72.2 bits (174), Expect = 9e-12
Identities = 93/398 (23%), Positives = 164/398 (40%), Gaps = 45/398 (11%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSI--KLQKVGRG 57
MRI + P V GG+ + V+ + T L+ H+V +S G PS +V G
Sbjct: 1 MRILMVSWEYPPVVIGGLGRHVHHLSTALAAAGHDVVVLSRCPSGTDPSTHPSSDEVTEG 60
Query: 58 VSLYSGQR--------------------RSIREALYFSAKVLLKAKWDYDIIDCQQFPYL 97
V + + + IR L K+ W D++ +L
Sbjct: 61 VRVIAAAQDPHEFTFGNDMMAWTLAMGHAMIRAGLRLK-KLGTDRSWRPDVVHAHD--WL 117
Query: 98 PCFSSKVHSILRNVPMVITWHEIWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSV---- 153
+ + +VPMV T H ++ GA+ Q+ + S L S+
Sbjct: 118 VAHPAIALAQFYDVPMVSTIHATEAGRHSGWVS--GALSRQVHAVESWLVRESDSLITCS 175
Query: 154 SKLTQKRLRSIG---IDSALIPNGIDFKRIQRVKKLPQE--YDVIFVGRLIKEKNVDLLL 208
+ + + G + +I NGID R + P+ ++++VGRL EK V +
Sbjct: 176 ASMNDEITELFGPGLAEITVIRNGIDAARWPFAARRPRTGPAELLYVGRLEYEKGVHDAI 235
Query: 209 RAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSK 268
A+ ++ P + I GEG ++ L+ K + +F+ L D+ +L+A L +
Sbjct: 236 AALPRLRRTHPGTTLTIAGEGTQQDWLIDQARKHRVLRATRFVGHL-DHTELLALLHRAD 294
Query: 269 VFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGF-ISPPNPSSLAEYI 327
VLPS E FG++ LEA A+G P++T + + + + +G G +P + + LA +
Sbjct: 295 AAVLPSHYEPFGLVALEAAAAGTPLVTSN--IGGLGEAVINGQTGVSCAPRDVAGLAAAV 352
Query: 328 ELSLSLGKKFKRNCIKNARR----YDWDNITQLTERLY 361
L +R +R +DW + T ++Y
Sbjct: 353 RSVLDDPAAAQRRARAARQRLTSDFDWQTVATATAQVY 390
>sp|P39862|CAPM_STAAU CAPM PROTEIN >gi|506709|gb|AAA64652.1| (U10927) CapM
[Staphylococcus aureus]
Length = 380
Score = 72.2 bits (174), Expect = 9e-12
Identities = 58/197 (29%), Positives = 101/197 (50%), Gaps = 18/197 (9%)
Query: 143 MSRLTSHHVSVSKLTQK-RLRSIGIDSALIPNGIDFKRIQRVK-KLPQEYDVI------- 193
+S H + S L ++ ++ +G S+ NGI F++ Q KL ++Y +
Sbjct: 144 ISESLKHKIITSNLAKENKITVLGFGSS---NGIQFEKFQLDNNKLEEKYHKLLNDNFVI 200
Query: 194 -FVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFIS 252
+VGR++K+K + L+++ K+I ++K+L+IG E + L LT+N +
Sbjct: 201 GYVGRIVKDKGIHELIQSFKIIVSKGYNVKLLVIGS-LETENSIDESDYLFLTQNPNVV- 258
Query: 253 FLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYN 312
+ I++ + VFV P+ REGFG + +EA A VPVIT + + + D + +G
Sbjct: 259 LIKHVSDPISFYNNMNVFVFPTHREGFGNVSIEAQALEVPVITTN--VTGAIDTVVNGET 316
Query: 313 GFISPPNP-SSLAEYIE 328
GFI ++AE IE
Sbjct: 317 GFIVEKGDFKAIAEKIE 333
>pir||S28485 lipopolysaccharide biosynthesis protein RfbV VC0259 precursor
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|48400|emb|CAA42151.1| (X59554) possible outer
membrane protein [Vibrio cholerae]
>gi|9654668|gb|AAF93434.1| (AE004114) lipopolysaccharide
biosynthesis protein RfbV [Vibrio cholerae]
Length = 410
Score = 71.0 bits (171), Expect = 2e-11
Identities = 95/368 (25%), Positives = 161/368 (42%), Gaps = 46/368 (12%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL 60
M++ ++Y YP KGGVE+ + I + +K + L N S G +
Sbjct: 41 MKVLHVYRTCYPETKGGVEQVIRFIASG-TKPLGIETKILTLSDNQTS---SYYCEGTEI 96
Query: 61 YSGQRRSIREALYFSAKVLLK----AKWDYDIIDCQQFP-----YLPCFSSKVHSILRNV 111
S ++ + FS K++ + +KW DII +P +L F S +
Sbjct: 97 ISVKKSIEISSNGFSWKLIRQFKKLSKWA-DIIH-YHYPWPTGDFLSLFGS-------SN 147
Query: 112 PMVITWHE--IWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA 169
P ++T+H I ++ KK + + + ++ + + S+ + + I
Sbjct: 148 PSIVTYHSDIIRQKCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKNKVKI--- 204
Query: 170 LIPNGIDFK--------RIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDL 221
IP +D I + ++ E +FVG L K +D LL A K + L
Sbjct: 205 -IPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLRYYKGLDFLLEAAK-----INQL 258
Query: 222 KVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPS--KREGF 279
V+I G+GPE+ +L + ++K L ENVK + F+++ +K+I +L SK FV PS + E F
Sbjct: 259 PVIIAGDGPERVKLESYIAKHNL-ENVKLVGFISEEDKVILHL-LSKAFVFPSHLRSEAF 316
Query: 280 GIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKR 339
GI ++EA +I+ D +S I +G G + PP S L + K
Sbjct: 317 GISLIEAQMYCKAIISSDIGTGSSYVNI-NGETGLVVPPADSQSFSDAMLKIEHDTKLCE 375
Query: 340 NCIKNARR 347
NAR+
Sbjct: 376 KLGINARK 383
>emb|CAA69126.1| (Y07788) RfbV [Vibrio cholerae]
Length = 370
Score = 71.0 bits (171), Expect = 2e-11
Identities = 95/368 (25%), Positives = 161/368 (42%), Gaps = 46/368 (12%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKKHEVHWISLDWGGNIPSIKLQKVGRGVSL 60
M++ ++Y YP KGGVE+ + I + +K + L N S G +
Sbjct: 1 MKVLHVYRTCYPETKGGVEQVIRFIASG-TKPLGIETKILTLSDNQTS---SYYCEGTEI 56
Query: 61 YSGQRRSIREALYFSAKVLLK----AKWDYDIIDCQQFP-----YLPCFSSKVHSILRNV 111
S ++ + FS K++ + +KW DII +P +L F S +
Sbjct: 57 ISVKKSIEISSNGFSWKLIRQFKKLSKWA-DIIH-YHYPWPTGDFLSLFGS-------SN 107
Query: 112 PMVITWHE--IWKEYWKKYLGNMGAIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSA 169
P ++T+H I ++ KK + + + ++ + + S+ + + I
Sbjct: 108 PSIVTYHSDIIRQKCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKNKVKI--- 164
Query: 170 LIPNGIDFK--------RIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDL 221
IP +D I + ++ E +FVG L K +D LL A K + L
Sbjct: 165 -IPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLRYYKGLDFLLEAAK-----INQL 218
Query: 222 KVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPS--KREGF 279
V+I G+GPE+ +L + ++K L ENVK + F+++ +K+I +L SK FV PS + E F
Sbjct: 219 PVIIAGDGPERVKLESYIAKHNL-ENVKLVGFISEEDKVILHL-LSKAFVFPSHLRSEAF 276
Query: 280 GIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSSLAEYIELSLSLGKKFKR 339
GI ++EA +I+ D +S I +G G + PP S L + K
Sbjct: 277 GISLIEAQMYCKAIISSDIGTGSSYVNI-NGETGLVVPPADSQSFSDAMLKIEHDTKLCE 335
Query: 340 NCIKNARR 347
NAR+
Sbjct: 336 KLGINARK 343
>dbj|BAB05134.1| (AP001512) unknown conserved protein in others [Bacillus
halodurans]
Length = 923
Score = 71.0 bits (171), Expect = 2e-11
Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 48/381 (12%)
Query: 12 PFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSIKLQKVG-RGVSLYSGQRR--- 66
P V GG+ + V + L+KK HE+H ++ G K +V VS +R
Sbjct: 548 PHVVGGLSRHVDALSQALAKKGHEIHVVTAAMDGAPEYEKNGEVHIHRVSGLQPEREPFL 607
Query: 67 ----SIREALYFSAKVLLKAKWDYDIIDCQQFPYLPCFSSKVHSILRNVPMVITWHEIWK 122
S+ A++ K L + + +D+I + + H L ++ T H
Sbjct: 608 DWVASLNLAMFEHVKKLYRFR-PFDVIHAHDWLVSGAALALKH--LFQTSLMATIHAT-- 662
Query: 123 EYWKKYLGNMG-------AIGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDS----ALI 171
++ N G AI Q KL++ + S+ ++ ++S+ + + A+I
Sbjct: 663 ----EHGRNQGIHTELQQAIHEQEMKLVTE-ADQIIVCSQFMKEHVQSLFVPNPDKVAVI 717
Query: 172 PNGIDFKRIQRVKKL---PQEYDVIF-VGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIG 227
NG+ ++I+ + P+ ++F VGR+++EK LL+ A K+ ++ ++ G
Sbjct: 718 ANGVAREQIEAARLQTISPENRFIVFSVGRIVQEKGFSLLIEAAAKCKELGEPIQFVVAG 777
Query: 228 EGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEAN 287
GP V + L + F+ +++D E+ Y ++ V + PS E FGI+ LEA
Sbjct: 778 HGPLLADYQQQVKERHLEAWISFVGYISDSERNEWYHRAD-VCIFPSLYEPFGIVALEAM 836
Query: 288 ASGVPVITLDYPLNASRDLITHGYNGFISPPNP--------SSLAEYIELSLSLGKKFKR 339
A+G P I D +++ HG NG P SL L +G K +
Sbjct: 837 AAGTPTIVSD--TGGLAEIVEHGDNGLKVPTGDVDAIVAQLLSLYHKPLLRAQIGFKGSQ 894
Query: 340 NCIKNARRYDWDNITQLTERL 360
+ I+ +Y W+ I TE +
Sbjct: 895 DVIE---QYSWETIADQTEAI 912
>gb|AAD46728.1|AF078736_2 (AF078736) putative glycosyl transferase [Escherichia coli]
Length = 397
Score = 71.0 bits (171), Expect = 2e-11
Identities = 45/146 (30%), Positives = 71/146 (47%), Gaps = 3/146 (2%)
Query: 174 GIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKY 233
G+D + ++ IF+ RL++EK + + A K +K P + +I+G
Sbjct: 200 GLDLNEFSYKEPPKEKITFIFIARLLREKGIFEFIEAAKFVKTTYPSSEFVILGGFESNN 259
Query: 234 RLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLP-SKREGFGIIVLEANASGVP 292
+++E + + E + +L+ S VFVLP S REG ++ EA A G P
Sbjct: 260 PFSLQKNEIESLRKEHDLIYPGHVENVQDWLEKSSVFVLPTSYREGVPRVIQEAMAIGRP 319
Query: 293 VITLDYPLNASRDLITHGYNGFISPP 318
VIT + P RD+I G NGF+ PP
Sbjct: 320 VITTNVP--GCRDIINDGVNGFLIPP 343
>emb|CAC12195.1| (AL445066) N-acetylglucosaminyl-phosphatidylinositol biosynthetic
protein related protein [Thermoplasma acidophilum]
Length = 381
Score = 71.0 bits (171), Expect = 2e-11
Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 21/319 (6%)
Query: 1 MRIAYIYDAVYPFVKGGVEKRVYEIGTRLSKK-HEVHWISLDWGGNIPSIKLQKVGRGVS 59
MRI Y D YP GV + E+ +L + HEV S+ ++ + K
Sbjct: 1 MRILYFTDTYYP-TPDGVSVYLKEVKQKLEDEGHEVMIFSVTGDSREHNVYVPKYTAPFL 59
Query: 60 LYSGQRRSIREALYFSAKVLLKA-KWDYDIIDCQQFPYLPCFSSKVHSILRN--VPMVIT 116
Y R + + +V +A +++ DI+ Y+ SS + + R VP V T
Sbjct: 60 PYPQYRVPVS---FIPFRVFRRALEFNPDIVHLHNAFYM---SSVGYLVARRIGVPPVAT 113
Query: 117 WH---EIWKEYWKKYLGNMGA-IGIQIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSAL-I 171
+H KE N+ +G + + R ++ S ++ L+ G+ + + +
Sbjct: 114 FHTDVSRMKESINMPFKNLAFDLGERYSLFLYRKCRMVMAPSATVEEYLKIRGVKNVVTL 173
Query: 172 PNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPE 231
P +D + + V E ++++GR+ +K + +L + +K + D++ I G GPE
Sbjct: 174 PLFVDTDKYRYVPADSGERYILYLGRITVDKGIYRVLDLAEAMKSE--DVRFKIAGVGPE 231
Query: 232 KYRLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGV 291
R+ +V K +NV+ + +++D K+ + ++ +FV PS + FGI V EA ASGV
Sbjct: 232 LDRIRRIV-KYHGMKNVEILGYVDDQRKM-DLMANASLFVYPSSADTFGISVFEALASGV 289
Query: 292 PV-ITLDYPLNASRDLITH 309
PV ++ D+P+ + + I++
Sbjct: 290 PVMVSEDFPVKENTEAISY 308
>pir||B64432 capsular polysaccharide biosynthsis protein M homolog -
Methanococcus jannaschii >gi|1591712|gb|AAB99063.1|
(U67549) capsular polysaccharide biosynthsis protein M
[Methanococcus jannaschii]
Length = 406
Score = 70.6 bits (170), Expect = 3e-11
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 155 KLTQKRLRSIGIDSALIPNGIDFKRIQRVKKLPQE--YDVIF--------VGRLIKEKNV 204
K+ + +S+ + ++PN + ++Q++ P E Y IF +GRL ++K
Sbjct: 158 KIIESHFKSLKNKTKIVPNVYEIDKLQQLSNEPLEKQYRNIFKDSFVFINIGRLTEQKGQ 217
Query: 205 DLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAYL 264
L+R+ K + + P+ K++I+G+G K +L L++KL L NV + + K +L
Sbjct: 218 WFLIRSFKRVTEKYPNAKLIILGDGELKNKLQELINKLNLQNNVYLLGMQKNPFK---FL 274
Query: 265 KSSKVFVLPSKREGFGIIVLEANASGVPVITLD 297
K S FV S EG V+EA + +PVI+ D
Sbjct: 275 KHSNCFVFSSLWEGLPNTVIEALSLNLPVISTD 307
>pir||S74777 hypothetical protein slr1076 - Synechocystis sp. (strain PCC 6803)
>gi|1652002|dbj|BAA16928.1| (D90901) hypothetical
protein [Synechocystis sp.]
Length = 381
Score = 70.6 bits (170), Expect = 3e-11
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 22/192 (11%)
Query: 151 VSVSKLTQKRL-RSIGIDS---ALIPNGIDFKRIQRVKK----------LPQEYDVIFVG 196
++VS T+ RL + +D ++PN D R Q K P + ++ +
Sbjct: 144 LAVSHYTRDRLLQEQALDPEKVVVLPNTFDTSRFQIAPKPQSLLEKYNLTPDQQVILTIA 203
Query: 197 RLIKE---KNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISF 253
RL E K D ++RA+ I +P++ LI G+G ++ R+ L+ L+L + V F
Sbjct: 204 RLAGEERYKGYDQIIRALPEIIKTIPNIHYLIGGKGGDRPRIEKLIQDLDLEDYVTLAGF 263
Query: 254 LNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNG 313
+ D E+L + VF +PSK EGFGI+ LEA A G P T+ + + D + +G G
Sbjct: 264 IPD-EELADHYNLCDVFAMPSKGEGFGIVYLEAMACGKP--TIGGNQDGAIDALCNGELG 320
Query: 314 FISPPNPSSLAE 325
+ NP L E
Sbjct: 321 VL--VNPDDLDE 330
>dbj|BAB07382.1| (AP001519) lipopolysaccharide biosynthesis [Bacillus halodurans]
Length = 373
Score = 70.6 bits (170), Expect = 3e-11
Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 25/257 (9%)
Query: 128 YLGNMGAIGI-QIEKLMSRLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRIQ----- 181
++ N+ +G + KL ++ S V + +R + G +I N +D +RI
Sbjct: 120 FVVNLQLLGFGAVYKLAHQIVSLSEGVKENLVRRYKIRGSRIQVIYNPVDLQRISDKMDH 179
Query: 182 -----RVKKLPQEYD--VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYR 234
+ K+L D +I GRL+ +K+ LL+A + + K++++GEGP K
Sbjct: 180 GIMEPKHKELFHTDDKVIITAGRLVPQKDQRTLLQAFAKVNEQTKS-KLVLLGEGPLKEE 238
Query: 235 LLTLVSKLELTENVKFISFL-NDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPV 293
L ++LE+ + V F+ F N Y Y K + VFVL S EGF ++ EA A+G PV
Sbjct: 239 LQQEAARLEVADRVHFLGFQSNPY----VYFKHADVFVLSSIHEGFSHVIAEALATGTPV 294
Query: 294 ITLDYPLNASRDLITHGYNGFI-SPPNPSSLAEYIELSLSLGKKFKRNCI----KNARRY 348
++ + + +++ G GF+ + +A I+ L+L + + + I + + +
Sbjct: 295 VSTNCK-SGPEEVLDKGKYGFLCEVGDVDEMASKIQHVLTLSPEQRASLIERGLERVQDF 353
Query: 349 DWDNITQLTERLYERVL 365
D I + E L+ L
Sbjct: 354 DAKQIVKQYETLFLHTL 370
>dbj|BAB18471.1| (AB033991) BtrM [Bacillus circulans]
Length = 389
Score = 70.6 bits (170), Expect = 3e-11
Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 4/179 (2%)
Query: 145 RLTSHHVSVSKLTQKRLRSIGIDSALIPNGIDFKRIQRVK-KLPQEYDVIFVGRLIKEKN 203
RL S++ + ++ S I S + + ID R+K +L + V+F+GR+ EK
Sbjct: 160 RLDSYNRLLEDSSKMTAISDCIGSNHLSHSIDCPFCSRLKTELLGKKTVLFLGRIAHEKG 219
Query: 204 VDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFISFLNDYEKLIAY 263
+ K + D + DL+ ++ G+GP++ + + L + F++ ++ + Y
Sbjct: 220 WSTFVSVAKELADKIGDLQFIVCGDGPQREAMEEQIKAANLQNQFRITGFIS-HKFVSCY 278
Query: 264 LKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHGYNGFISPPNPSS 322
L +++F+LPS E FG ++EA +GVP+I+ + D+ THG + P S
Sbjct: 279 LHHAQLFLLPSHHEEFGGSLIEAAIAGVPIISTNN--GGPADIFTHGETAILKDPGDVS 335
>pir||S77553 probable hexosyltransferase (EC 2.4.1.-) sll1971 [similarity] -
Synechocystis sp. (strain PCC 6803)
>gi|1652478|dbj|BAA17400.1| (D90905) hypothetical
protein [Synechocystis sp.]
Length = 404
Score = 70.2 bits (169), Expect = 4e-11
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 176 DFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIKLIKDDVPD-LKVLIIGEGPEKYR 234
D++ +R E V +VGR+ EK + +LL A + + + D +K +IIG G R
Sbjct: 205 DYRNFRRKFAEDGEKIVYYVGRMTYEKGISVLLTAAPQVLEALNDQVKFVIIG-GGNTDR 263
Query: 235 LLTLVSKLELTENVKFISFLNDYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVI 294
L L L + E+ F F++D E L + + V PS E FGI+ LE+ A+ VPV+
Sbjct: 264 LKQLAWNLGIWEHCFFTGFMSD-EDLDKFQTIADCAVFPSLYEPFGIVALESFAARVPVV 322
Query: 295 TLDYPLNASRDLITHGYNGFISPP-NPSSLAEYIELSL---SLGKKFKRNCIKN-ARRYD 349
+ +++ H G ++ NP SLA I L SL K+ K+ R++
Sbjct: 323 VSN--TGGLAEVVRHHSTGIVTQTNNPDSLAHGILEILSNPSLAKQLVEAAYKDLGIRFN 380
Query: 350 WDNITQLTERLYERVL 365
W + + T +YERV+
Sbjct: 381 WSKLAKETAAIYERVV 396
>sp|P13484|TAGE_BACSU PROBABLE POLY(GLYCEROL-PHOSPHATE) ALPHA-GLUCOSYLTRANSFERASE
(TEICHOIC ACID BIOSYNTHESIS PROTEIN E)
>gi|80353|pir||S06048 poly(glycerol-phosphate)
alpha-glucosyltransferase (EC 2.4.1.52) tagE - Bacillus
subtilis >gi|580920|emb|CAA33270.1| (X15200) rodD (gtaA)
polypeptide (AA 1-673) [Bacillus subtilis]
>gi|2636099|emb|CAB15590.1| (Z99122)
UDP-glucose:polyglycerol phosphate glucosyltransferase
[Bacillus subtilis]
Length = 673
Score = 69.9 bits (168), Expect = 5e-11
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 172 PNGIDFKRIQRVKKLPQE-YDVIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGP 230
P+ ID V +P E Y + + RL KN+ ++A L+ ++P+ K+ I G G
Sbjct: 329 PHTIDKPLDPAVLNVPSEKYKAVIISRLASMKNLIHAVKAFSLVVKEIPEAKLDIFGSGE 388
Query: 231 EKYRLLTLVSKLELTENVKFISFLNDY-EKLIAYLKSSKVFVLPSKREGFGIIVLEANAS 289
+ ++ + +L NV FL Y + + + + + + S EGFG+ +EA ++
Sbjct: 389 DFEKIKKEIEDTKLQNNV----FLKGYTDNPDSEFQKAWLTISTSHFEGFGLSNMEALSN 444
Query: 290 GVPVITLDYPLNASRDLITHGYNGF-ISPPNPSSLAEYIELSL----SLGKKFKRNCIKN 344
G PV+T DY A R L+T G NG+ I N L + I +SL S +KF K
Sbjct: 445 GCPVVTYDYDYGA-RSLVTDGANGYVIEQYNIEKLGQAI-ISLMKDESTHQKFSEQAFKM 502
Query: 345 ARRYDWDN 352
A +Y N
Sbjct: 503 AEKYSRPN 510
>pir||H64446 probable hexosyltransferase (EC 2.4.1.-) MJ1178 [similarity] -
Methanococcus jannaschii >gi|1591805|gb|AAB99181.1|
(U67559) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 351
Score = 69.9 bits (168), Expect = 5e-11
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 25/182 (13%)
Query: 193 IFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFIS 252
+FVG + +K VD+L+ AIK I D +IG+G +L + + N+ I
Sbjct: 183 LFVGAFVPQKGVDILIDAIKDI-----DFNFKLIGDG----KLYKKIENFVVKNNLSHIE 233
Query: 253 FLN--DYEKLIAYLKSSKVFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLITHG 310
L ++++ ++++ V+PS+ EGFG++ +E A PVI + +++ G
Sbjct: 234 LLGRKSFDEVASFMRKCSFLVVPSRSEGFGMVAVEGMACSKPVIAT--RVGGLGEIVIDG 291
Query: 311 YNGFISPP-NPSSLAEYI-------ELSLSLGKKFKRNCIKNARRYDWDNITQLTERLYE 362
YNG ++ NP+ L E I EL +LG+ K + ++++ W+ ++YE
Sbjct: 292 YNGLLAEKNNPNDLKEKILELINNEELRKTLGENGK----EFSKKFSWEKCVMGVRKVYE 347
Query: 363 RV 364
+
Sbjct: 348 EL 349
>pir||F72257 lipopolysaccharide biosynthesis protein-related protein -
Thermotoga maritima (strain MSB8)
>gi|4981969|gb|AAD36476.1|AE001793_6 (AE001793)
lipopolysaccharide biosynthesis protein-related protein
[Thermotoga maritima]
Length = 471
Score = 69.9 bits (168), Expect = 5e-11
Identities = 75/261 (28%), Positives = 127/261 (47%), Gaps = 28/261 (10%)
Query: 108 LRNVPMVITWHEIW-KEYWKKYLGNMGA------IGIQIEKLMSRLTSHHVSVSKLTQKR 160
+ +VP+VIT H I+ KE ++ + + + I++ +++S + ++ VS + T R
Sbjct: 188 VHDVPLVITEHGIYHKEREREIILSTWVPDAYKPMWIELFRIISMI-AYRVSDALTTLYR 246
Query: 161 LRSI-----GIDSA---LIPNGIDFKRIQRVKKLPQEYDVIFVGRLIKEKNVDLLLRAIK 212
I G D +IPNGI+ + + + + V FVGR+ + K++ +RAI
Sbjct: 247 KNQIYQLELGADPEKMFIIPNGINVEEYDLPPEKHEGFVVGFVGRVARIKDLKTAIRAIS 306
Query: 213 LIKDDVPD-LKVLIIGE-GPEKY--RLLTLVSKLELTENVKFISFLNDYEKLIAYLKSSK 268
++K+ V + L LIIG E Y LV L L + V+F+ N E Y
Sbjct: 307 IVKEVVGEKLTFLIIGPVDAEDYLAECKRLVRVLRLEDTVEFLGPQNVKE----YYPKFD 362
Query: 269 VFVLPSKREGFGIIVLEANASGVPVITLDYPLNASRDLI--THGYNGFISPPNPSSLAEY 326
+ +L S EG +++LEA A+GVP++ D + A RD+I G G + PP
Sbjct: 363 LLLLSSVSEGQPLVILEAMAAGVPIVATD--VGACRDIIYDKDGQCGIVVPPKDHLSMSK 420
Query: 327 IELSLSLGKKFKRNCIKNARR 347
+ L K+ + KNA++
Sbjct: 421 AIIKLYEDKELRDTFSKNAKK 441
>emb|CAB75373.1| (AL139298) putative transferase [Streptomyces coelicolor A3(2)]
Length = 942
Score = 69.9 bits (168), Expect = 5e-11
Identities = 50/179 (27%), Positives = 91/179 (49%), Gaps = 9/179 (5%)
Query: 192 VIFVGRLIKEKNVDLLLRAIKLIKDDVPDLKVLIIGEGPEKYRLLTLVSKLELTENVKFI 251
++ RL+ +K VD ++A D P ++ I G+GP+ RL L+ L L ++V+
Sbjct: 211 IVMPRRLVPDKQVDHAIQAFAKALPDHPGWRLRIFGDGPQMSRLRNLIQGLGLHDSVE-- 268
Query: 252 SFLNDYEKLIAYLKSSKVFVLPSK-REGFGIIVLEANASGVPVITLDYPLNASRDLITHG 310
L + + + + +LPS+ E F +++LEA A+GVP + D + ++I HG
Sbjct: 269 -LLGPSQHMTEEWARASLTILPSQDGEAFPLVLLEAFAAGVPAVAYDI-VTGPAEIIRHG 326
Query: 311 YNGFISPPNP-SSLAEYIELSL---SLGKKFKRNCIKNARRYDWDNITQLTERLYERVL 365
+G + PPN SLAE I + +L + + + + R+ D I + E L+ ++
Sbjct: 327 EDGLLVPPNDVESLAEAISRLMGDEALLRSYGEKAHEGSTRFAADVIVKQWEELFTELV 385
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135954598
Number of Sequences: 2977
Number of extensions: 5667376
Number of successful extensions: 18296
Number of sequences better than 1.0e-10: 57
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 18186
Number of HSP's gapped (non-prelim): 70
length of query: 368
length of database: 189,106,746
effective HSP length: 54
effective length of query: 314
effective length of database: 156,788,448
effective search space: 49231572672
effective search space used: 49231572672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)