BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1412 (PAB1412) DE:Hypothetical protein
(215 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 426 e-119
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 318 4e-86
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 215 4e-55
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 199 2e-50
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 198 6e-50
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 169 2e-41
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 161 9e-39
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 160 1e-38
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 157 1e-37
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 145 3e-34
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 143 2e-33
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 136 2e-31
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 134 1e-30
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 129 3e-29
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 114 8e-25
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 108 8e-23
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 101 8e-21
pir||G71134 hypothetical protein PH0843 - Pyrococcus horikoshii ... 87 2e-16
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 79 4e-14
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 426 bits (1084), Expect = e-119
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES
Sbjct: 1 MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
Query: 61 EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK
Sbjct: 61 EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK
Sbjct: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST 215
SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST
Sbjct: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST 215
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 318 bits (806), Expect = 4e-86
Identities = 152/213 (71%), Positives = 189/213 (88%)
Query: 1 MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
+EF++R+ RVVLIIDEFP L+EHY+PVLSL+Q+AWD++LS++++MLI+ GSSVS ME+
Sbjct: 99 IEFSKRVQGRRVVLIIDEFPYLIEHYKPVLSLIQRAWDMELSKSDLMLILCGSSVSSMET 158
Query: 61 EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
E+L YKSPLYGRRTGQW++ E+PF+ + EF P Y+ E+L+KV+GV G IPAYLLQF+ K
Sbjct: 159 EVLGYKSPLYGRRTGQWKVGELPFWSLREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEK 218
Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
+FDENVVE+VL KGAFLYEEAE LL+EE+REPANYF ILQAIASGR+RFGEIVNATGLDK
Sbjct: 219 NFDENVVEKVLSKGAFLYEEAEILLKEEMREPANYFIILQAIASGRSRFGEIVNATGLDK 278
Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
SLVSKYL VL++LG+V+REVPVTA+ KE KRG
Sbjct: 279 SLVSKYLNVLEKLGMVEREVPVTASRKEALKRG 311
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 215 bits (541), Expect = 4e-55
Identities = 109/213 (51%), Positives = 155/213 (72%), Gaps = 4/213 (1%)
Query: 1 MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
+E+ + R+V++IDEFP LV+ R + S+LQ+ WDLKLS I LII GSS+S+ME
Sbjct: 89 LEYLNQKATERLVVVIDEFPYLVKGDRSLPSILQEYWDLKLSNGRIFLIICGSSISMME- 147
Query: 61 EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
++L YKSP+YGRRTGQ L + F + EFLPGY++ED +K +G+ G PA+LL+F +K
Sbjct: 148 KLLGYKSPIYGRRTGQINLKPVDFLHAREFLPGYSLEDFIKAYGILGGSPAHLLEFDDSK 207
Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
+ EN++E L + LY++A F+LREEL EP NYFAI++A+A+G+ GEI+N TGL +
Sbjct: 208 TIKENLLE-YLRSDSLLYQDAFFVLREELEEPRNYFAIMEAVAAGKTSLGEIMNETGLSR 266
Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
+ V+KYL+VL L VKRE+P+TA+ K S+RG
Sbjct: 267 ATVAKYLSVLIELDFVKREIPITASRK--SRRG 297
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 199 bits (502), Expect = 2e-50
Identities = 105/202 (51%), Positives = 146/202 (71%), Gaps = 6/202 (2%)
Query: 13 VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
++ IDEFP LV+ + + S+LQ+ W++KLS+ I LI+ GSSVS+ E +L YKSPLYGR
Sbjct: 138 IIAIDEFPYLVKGNKALPSILQEYWEMKLSKKKIFLIVSGSSVSMTE-RLLGYKSPLYGR 196
Query: 73 RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
RT Q +L + FF EFLP Y++ED ++V+G+ G PAYLL+FS KS +EN+ + F
Sbjct: 197 RTAQLKLKPLDFFNAREFLPKYSLEDFVRVYGILGGTPAYLLEFSDEKSLEENL--KSYF 254
Query: 133 K-GAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQ 191
+ + LY +A F+LREEL EP NYFAI++AIA G GEIVN TGL+++ V KYL+VL
Sbjct: 255 RVDSLLYGDALFILREELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLI 314
Query: 192 RLGIVKREVPVTATMKEVSKRG 213
L +V+REVP+TA+ K S++G
Sbjct: 315 DLDLVRREVPITASRK--SRKG 334
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 198 bits (497), Expect = 6e-50
Identities = 103/203 (50%), Positives = 145/203 (70%), Gaps = 4/203 (1%)
Query: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
RV++ IDEFP L++ + + S+LQ+ WDLKLS++ I LII GSS+++ME ++L YKSP+Y
Sbjct: 99 RVIVAIDEFPYLLKGNKALASILQEYWDLKLSKSKIFLIICGSSITMME-KLLGYKSPIY 157
Query: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
GRRT Q +L + FF +FLP Y IED ++ +G+ G PAYLL+F KS +EN++
Sbjct: 158 GRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLS-Y 216
Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
+FLY++A F+LREEL EP NYFAI++AIA G GEI+N T LD+ V KYL+VL
Sbjct: 217 FRPDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVL 276
Query: 191 QRLGIVKREVPVTATMKEVSKRG 213
L +V+REVP+T + K S++G
Sbjct: 277 IDLDLVRREVPITESWK--SRKG 297
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 169 bits (425), Expect = 2e-41
Identities = 92/213 (43%), Positives = 139/213 (65%), Gaps = 5/213 (2%)
Query: 2 EFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESE 61
E E +G + L++DEFPLLV++Y +L LLQ+ WD + +++ GSSVS+M+
Sbjct: 97 ELFELLGGIGITLVLDEFPLLVKNYPRILGLLQEYWDFGEGGS---VVLCGSSVSMMKG- 152
Query: 62 ILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKS 121
+ Y SP++GRRT ++ + F ++GEF PGY+ E+L++ +GV IP YLL+F ++S
Sbjct: 153 LTDYGSPIHGRRTISVKVKPLEFRHVGEFFPGYSPEELVRAYGVLDGIPEYLLRFDPSQS 212
Query: 122 FDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKS 181
+ENV+ R F +LYEEAE LLR ELR+ + Y IL+AIA+G F EI TG+D S
Sbjct: 213 VEENVI-REFFGRGYLYEEAELLLRYELRDLSTYNTILEAIAAGYTSFNEIKTKTGMDGS 271
Query: 182 LVSKYLTVLQRLGIVKREVPVTATMKEVSKRGS 214
+S+YL+ L+ L +VKRE PV + ++G+
Sbjct: 272 KLSRYLSTLEELELVKREYPVLPGAAKRRRKGA 304
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 161 bits (402), Expect = 9e-39
Identities = 85/192 (44%), Positives = 125/192 (64%), Gaps = 2/192 (1%)
Query: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
R+V++IDE + + + LS LQK WDL LS T IMLI+ GS VS ME IL+ KSP+Y
Sbjct: 102 RLVVVIDEVQYIAKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIY 160
Query: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
GRRTG W++ E+ FF +F E ++ ++ V G +P YL ++ N F EN+ E +
Sbjct: 161 GRRTGAWKVEEMDFFNAWKF-HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELL 219
Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
L KGA Y+E ++LL++ELR+ + YF+IL+AIA G RFG+I + ++ ++KYL VL
Sbjct: 220 LSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL 279
Query: 191 QRLGIVKREVPV 202
+G ++ E PV
Sbjct: 280 SEMGYIEEETPV 291
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 160 bits (400), Expect = 1e-38
Identities = 87/204 (42%), Positives = 127/204 (61%), Gaps = 6/204 (2%)
Query: 10 GRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPL 69
G++V++IDEFP L+E Y+PV+S+ Q+ DL L + +MLI+ GSS+ +ME ++L YK+PL
Sbjct: 99 GKLVVVIDEFPYLIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPL 158
Query: 70 YGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVER 129
YGR G ++ FF + E+ G E L++++GVT +P Y+ F + DE ++
Sbjct: 159 YGRAQGIMKVKPFRFFDMVEWY-GRDFEKLVRLYGVTWGVPRYMEFF--REGSDEEIIRN 215
Query: 130 VLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTV 189
+FL+ EA+ LL EELR PA Y I++AIA G R EI N + +D + YL
Sbjct: 216 FFDPSSFLFNEAKLLLMEELRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKT 275
Query: 190 LQRLGIVKREVPVTATMKEVSKRG 213
LQ LGIVKR P+T K +KRG
Sbjct: 276 LQELGIVKRITPIT---KRNAKRG 296
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 157 bits (393), Expect = 1e-37
Identities = 87/206 (42%), Positives = 126/206 (60%), Gaps = 6/206 (2%)
Query: 8 GDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKS 67
G G++++I DEFP L+E + V+S Q+ D+ L + I +I+ GSSV +ME EIL+YKS
Sbjct: 97 GQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKS 156
Query: 68 PLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVV 127
PLYGR +G ++ FF + E+ G E L++++GVT IP Y+ F + D+ ++
Sbjct: 157 PLYGRASGVLKVKPFRFFDMVEWF-GKDFERLLRLYGVTWGIPKYMEFFKTGS--DDEII 213
Query: 128 ERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYL 187
AFL+ EA LL EELR P Y I++AIA G+ R EI G++ +S YL
Sbjct: 214 NNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYL 273
Query: 188 TVLQRLGIVKREVPVTATMKEVSKRG 213
VL LGIV+REVP+T + +KRG
Sbjct: 274 RVLSNLGIVRREVPIT---ERKAKRG 296
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 145 bits (363), Expect = 3e-34
Identities = 84/201 (41%), Positives = 125/201 (61%), Gaps = 4/201 (1%)
Query: 13 VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
++IIDEFP L++ V+SL Q+A DL+LS +N +I+ GSSVS++ ++L+ KSPLYGR
Sbjct: 90 IIIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGR 149
Query: 73 RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
RTG +L + FF + EF P + E+L++++G T IP Y++Q F E + + +L
Sbjct: 150 RTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDGIPYYIIQV--KLPFWEWLEKELLS 207
Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
+F +E +FLL+ E E Y IL+AIA G+ EI + TG+ S ++ YL L
Sbjct: 208 PLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLE 267
Query: 193 LGIVKREVPVTATMKEVSKRG 213
+V REVP+T K SKRG
Sbjct: 268 TDLVVREVPITE--KPYSKRG 286
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 143 bits (357), Expect = 2e-33
Identities = 74/165 (44%), Positives = 110/165 (65%), Gaps = 2/165 (1%)
Query: 47 MLIIYGSSVSVMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVT 106
MLI+ GS VS ME IL+ KSP+YGRRTG W++ E+ FF + +F P IE +K++GV
Sbjct: 1 MLILCGSLVSFMEG-ILSGKSPIYGRRTGTWKVEEMSFFDVLKFHP-IDIETAIKIYGVF 58
Query: 107 GEIPAYLLQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGR 166
G +P Y + + K F EN+ + VL KGA Y+E ++LL+EELR+ + YF+IL+AI+ G
Sbjct: 59 GGVPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGY 118
Query: 167 NRFGEIVNATGLDKSLVSKYLTVLQRLGIVKREVPVTATMKEVSK 211
+RFG+I +A ++ + KYL VL+ +G ++ E P+ K V K
Sbjct: 119 SRFGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRGKTVYK 163
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 136 bits (339), Expect = 2e-31
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 4/201 (1%)
Query: 13 VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
++IIDEFP L++ VLSL Q+ D+ L T LII GSS+S+M ++L+YKSPLYGR
Sbjct: 90 IIIIDEFPNLIKENPNVLSLFQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGR 149
Query: 73 RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
+TG ++ + F ++ EF P E+L++++G IP YL + F + + + +
Sbjct: 150 KTGVLKIKPLKFKHLKEFFPKAIWEELVEIYGFADGIPYYLEKVKL--PFWDYLDKEIKR 207
Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
+FL E +FL++ E EP Y IL+AIA G + GEI N G S ++ YL L
Sbjct: 208 VDSFLRYEVDFLMKYEFEEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIE 267
Query: 193 LGIVKREVPVTATMKEVSKRG 213
+ ++R+ P+T ++K SK+G
Sbjct: 268 VEFIERQTPITESVK--SKKG 286
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 134 bits (333), Expect = 1e-30
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 2/197 (1%)
Query: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
+ ++I+DEF ++ R ++S LQ+AWD S+ +ML++ GS + +M E+L+Y SPLY
Sbjct: 99 KTLIILDEFSYAIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLY 158
Query: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
GRRT + L + F +F + + ++++ + G IPAYL+ S + + E
Sbjct: 159 GRRTMSFHLKPLTLFNSLKFFDSFEVG--LEMYMLVGGIPAYLIIASRYEDTRRFIEETF 216
Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
L F Y+E LL ELRE YF+IL A ASG+ R EI + GL+ + YL L
Sbjct: 217 LRTEGFFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTL 276
Query: 191 QRLGIVKREVPVTATMK 207
RLG ++RE+P+ K
Sbjct: 277 VRLGFIEREIPIARNDK 293
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 129 bits (321), Expect = 3e-29
Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 4 AERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEIL 63
AE++ D ++++DEF ++ R +LS LQ+ WD LS +ML+I GS + +M ++L
Sbjct: 93 AEKVDD--CLIVLDEFTYAIKSERKILSDLQRTWDDILSEKKVMLVISGSLLGMMWDDVL 150
Query: 64 AYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFD 123
+Y SPLYGRRT L PF Y E ++V+ + G IP+YL + +
Sbjct: 151 SYASPLYGRRTRSMNLK--PFDYPNALKFFSDPEFGIRVYMLVGGIPSYLKLAGRYNTVE 208
Query: 124 ENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183
E + E L F Y+E LL EELRE YF+IL+AIA G R I N GL V
Sbjct: 209 EFIREEFLSDYGFFYDEPYVLLGEELRELKTYFSILRAIAEGNRRLERIANFIGLPMRSV 268
Query: 184 SKYLTVLQRLGIVKREVPVTATMK 207
Y+ L RLG+V+RE P+ + K
Sbjct: 269 YPYVDTLVRLGLVERESPILGSRK 292
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 114 bits (283), Expect = 8e-25
Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Query: 13 VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
++IIDEFP +++ +LS QK D L + LI+ GSS+S+ME + ++YKSPLYGR
Sbjct: 94 IIIIDEFPYMIKEDESILSTFQKIVDETLKGSKTKLILLGSSISMME-DAISYKSPLYGR 152
Query: 73 RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
RT L E+ F + F +++ D + V+G G +P YL + + F + + +
Sbjct: 153 RTASIELKELKFKDLKGF--NFSLIDAIHVYGFAGGVPFYLTK--AKTPFLKWINAELKE 208
Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
+F+ +E +F+LR E E Y IL AI+SG+N GEI + + VS YL L++
Sbjct: 209 VDSFIKDEIDFMLRYEFSEIGTYKEILHAISSGKNTLGEIKDFVRISGD-VSSYLNKLEK 267
Query: 193 LGIVKREVP 201
+GI+ +E P
Sbjct: 268 IGIIGKEFP 276
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 108 bits (266), Expect = 8e-23
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 57 VMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQF 116
++ ++L+YKSPLYGRRTG +L + FF + EF P + E+L++++G+T IP Y++Q
Sbjct: 1 MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60
Query: 117 SSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNAT 176
F E + E + +F +E +FLLR E E Y IL+AIA G+ EI + T
Sbjct: 61 --KPPFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFT 118
Query: 177 GLDKSLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
GL S ++ YL L ++ REVP+T K+ SK+G
Sbjct: 119 GLRNSDITPYLRNLIEADLIVREVPITE--KKTSKKG 153
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 101 bits (249), Expect = 8e-21
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 47 MLIIYGSSVSVMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVT 106
ML++ GS + +ME +L++ SPLYGRRT +RL + F F IE L K + +
Sbjct: 1 MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKS-PIEGL-KFYMLL 58
Query: 107 GEIPAYLLQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGR 166
G IPAYL+ S ++ E V L + Y+E +++ EL+E YF+IL A++SGR
Sbjct: 59 GGIPAYLIIASRYETVGEFVEREFLTPEGYFYDEP-YIVLSELKELKTYFSILSAMSSGR 117
Query: 167 NRFGEIVNATGLDKSLVSKYLTVLQRLGIVKREVPVTATMK 207
R EI + GL+ + YL L RLG V+RE+P+ K
Sbjct: 118 RRPSEIASEVGLEGRKIYPYLETLIRLGFVERELPIARKEK 158
>pir||G71134 hypothetical protein PH0843 - Pyrococcus horikoshii
>gi|3257254|dbj|BAA29937.1| (AP000003) 136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 136
Score = 87.0 bits (212), Expect = 2e-16
Identities = 46/88 (52%), Positives = 60/88 (67%)
Query: 114 LQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIV 173
L S SF EN+ +L K FLY EAEFLLR+ELREPA YFAIL+AI+ + GEIV
Sbjct: 16 LMNSRGVSFWENIENLMLRKENFLYAEAEFLLRQELREPARYFAILRAISLRKTTHGEIV 75
Query: 174 NATGLDKSLVSKYLTVLQRLGIVKREVP 201
+ TG D+ +VSKYL L R+ ++++ P
Sbjct: 76 DYTGFDRGIVSKYLDNLARIRVIRKVHP 103
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 79.2 bits (192), Expect = 4e-14
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 9/209 (4%)
Query: 9 DGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSP 68
D ++V+I+DEF + S LQK WDLK +N++LI GS V +M+ + K P
Sbjct: 108 DIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEP 167
Query: 69 LYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVE 128
L+GR +L F+ F+ D ++++ G +P YLL ++ N +E
Sbjct: 168 LFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIE 224
Query: 129 --RVLFKGAF--LYEEAEFLLREEL-REPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183
R LF L EE +L+ E R +YF+IL+A++ G EI + TGL V
Sbjct: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
Query: 184 SKYLTVL-QRLGIVKREVPVTATMKEVSK 211
KYL+ L + +EVP T ++ K
Sbjct: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRK 313
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75333980
Number of Sequences: 2977
Number of extensions: 3024226
Number of successful extensions: 6901
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6859
Number of HSP's gapped (non-prelim): 20
length of query: 215
length of database: 189,106,746
effective HSP length: 54
effective length of query: 161
effective length of database: 156,788,448
effective search space: 25242940128
effective search space used: 25242940128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)