BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1412 (PAB1412) DE:Hypothetical protein
         (215 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st...   426  e-119
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ...   318  4e-86
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte...   215  4e-55
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ...   199  2e-50
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st...   198  6e-50
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]      169  2e-41
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st...   161  9e-39
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ...   160  1e-38
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st...   157  1e-37
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st...   145  3e-34
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ...   143  2e-33
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha...   136  2e-31
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st...   134  1e-30
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ...   129  3e-29
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat...   114  8e-25
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ...   108  8e-23
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ...   101  8e-21
pir||G71134 hypothetical protein PH0843 - Pyrococcus horikoshii ...    87  2e-16
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st...    79  4e-14

>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
           >gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 215
           
 Score =  426 bits (1084), Expect = e-119
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
           MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES
Sbjct: 1   MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60

Query: 61  EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
           EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK
Sbjct: 61  EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120

Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
           SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK
Sbjct: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180

Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST 215
           SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST
Sbjct: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRGST 215


>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
           >gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 471
           
 Score =  318 bits (806), Expect = 4e-86
 Identities = 152/213 (71%), Positives = 189/213 (88%)

Query: 1   MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
           +EF++R+   RVVLIIDEFP L+EHY+PVLSL+Q+AWD++LS++++MLI+ GSSVS ME+
Sbjct: 99  IEFSKRVQGRRVVLIIDEFPYLIEHYKPVLSLIQRAWDMELSKSDLMLILCGSSVSSMET 158

Query: 61  EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
           E+L YKSPLYGRRTGQW++ E+PF+ + EF P Y+ E+L+KV+GV G IPAYLLQF+  K
Sbjct: 159 EVLGYKSPLYGRRTGQWKVGELPFWSLREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEK 218

Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
           +FDENVVE+VL KGAFLYEEAE LL+EE+REPANYF ILQAIASGR+RFGEIVNATGLDK
Sbjct: 219 NFDENVVEKVLSKGAFLYEEAEILLKEEMREPANYFIILQAIASGRSRFGEIVNATGLDK 278

Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
           SLVSKYL VL++LG+V+REVPVTA+ KE  KRG
Sbjct: 279 SLVSKYLNVLEKLGMVEREVPVTASRKEALKRG 311


>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 458
           
 Score =  215 bits (541), Expect = 4e-55
 Identities = 109/213 (51%), Positives = 155/213 (72%), Gaps = 4/213 (1%)

Query: 1   MEFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMES 60
           +E+  +    R+V++IDEFP LV+  R + S+LQ+ WDLKLS   I LII GSS+S+ME 
Sbjct: 89  LEYLNQKATERLVVVIDEFPYLVKGDRSLPSILQEYWDLKLSNGRIFLIICGSSISMME- 147

Query: 61  EILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNK 120
           ++L YKSP+YGRRTGQ  L  + F +  EFLPGY++ED +K +G+ G  PA+LL+F  +K
Sbjct: 148 KLLGYKSPIYGRRTGQINLKPVDFLHAREFLPGYSLEDFIKAYGILGGSPAHLLEFDDSK 207

Query: 121 SFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDK 180
           +  EN++E  L   + LY++A F+LREEL EP NYFAI++A+A+G+   GEI+N TGL +
Sbjct: 208 TIKENLLE-YLRSDSLLYQDAFFVLREELEEPRNYFAIMEAVAAGKTSLGEIMNETGLSR 266

Query: 181 SLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
           + V+KYL+VL  L  VKRE+P+TA+ K  S+RG
Sbjct: 267 ATVAKYLSVLIELDFVKREIPITASRK--SRRG 297


>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
           >gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 496
           
 Score =  199 bits (502), Expect = 2e-50
 Identities = 105/202 (51%), Positives = 146/202 (71%), Gaps = 6/202 (2%)

Query: 13  VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
           ++ IDEFP LV+  + + S+LQ+ W++KLS+  I LI+ GSSVS+ E  +L YKSPLYGR
Sbjct: 138 IIAIDEFPYLVKGNKALPSILQEYWEMKLSKKKIFLIVSGSSVSMTE-RLLGYKSPLYGR 196

Query: 73  RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
           RT Q +L  + FF   EFLP Y++ED ++V+G+ G  PAYLL+FS  KS +EN+  +  F
Sbjct: 197 RTAQLKLKPLDFFNAREFLPKYSLEDFVRVYGILGGTPAYLLEFSDEKSLEENL--KSYF 254

Query: 133 K-GAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQ 191
           +  + LY +A F+LREEL EP NYFAI++AIA G    GEIVN TGL+++ V KYL+VL 
Sbjct: 255 RVDSLLYGDALFILREELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLI 314

Query: 192 RLGIVKREVPVTATMKEVSKRG 213
            L +V+REVP+TA+ K  S++G
Sbjct: 315 DLDLVRREVPITASRK--SRKG 334


>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
           >gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 469
           
 Score =  198 bits (497), Expect = 6e-50
 Identities = 103/203 (50%), Positives = 145/203 (70%), Gaps = 4/203 (1%)

Query: 11  RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
           RV++ IDEFP L++  + + S+LQ+ WDLKLS++ I LII GSS+++ME ++L YKSP+Y
Sbjct: 99  RVIVAIDEFPYLLKGNKALASILQEYWDLKLSKSKIFLIICGSSITMME-KLLGYKSPIY 157

Query: 71  GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
           GRRT Q +L  + FF   +FLP Y IED ++ +G+ G  PAYLL+F   KS +EN++   
Sbjct: 158 GRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLS-Y 216

Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
               +FLY++A F+LREEL EP NYFAI++AIA G    GEI+N T LD+  V KYL+VL
Sbjct: 217 FRPDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVL 276

Query: 191 QRLGIVKREVPVTATMKEVSKRG 213
             L +V+REVP+T + K  S++G
Sbjct: 277 IDLDLVRREVPITESWK--SRKG 297


>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
           Length = 350
           
 Score =  169 bits (425), Expect = 2e-41
 Identities = 92/213 (43%), Positives = 139/213 (65%), Gaps = 5/213 (2%)

Query: 2   EFAERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESE 61
           E  E +G   + L++DEFPLLV++Y  +L LLQ+ WD     +   +++ GSSVS+M+  
Sbjct: 97  ELFELLGGIGITLVLDEFPLLVKNYPRILGLLQEYWDFGEGGS---VVLCGSSVSMMKG- 152

Query: 62  ILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKS 121
           +  Y SP++GRRT   ++  + F ++GEF PGY+ E+L++ +GV   IP YLL+F  ++S
Sbjct: 153 LTDYGSPIHGRRTISVKVKPLEFRHVGEFFPGYSPEELVRAYGVLDGIPEYLLRFDPSQS 212

Query: 122 FDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKS 181
            +ENV+ R  F   +LYEEAE LLR ELR+ + Y  IL+AIA+G   F EI   TG+D S
Sbjct: 213 VEENVI-REFFGRGYLYEEAELLLRYELRDLSTYNTILEAIAAGYTSFNEIKTKTGMDGS 271

Query: 182 LVSKYLTVLQRLGIVKREVPVTATMKEVSKRGS 214
            +S+YL+ L+ L +VKRE PV     +  ++G+
Sbjct: 272 KLSRYLSTLEELELVKREYPVLPGAAKRRRKGA 304


>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
           >gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 459
           
 Score =  161 bits (402), Expect = 9e-39
 Identities = 85/192 (44%), Positives = 125/192 (64%), Gaps = 2/192 (1%)

Query: 11  RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
           R+V++IDE   + +  +  LS LQK WDL LS T IMLI+ GS VS ME  IL+ KSP+Y
Sbjct: 102 RLVVVIDEVQYIAKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIY 160

Query: 71  GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
           GRRTG W++ E+ FF   +F      E ++ ++ V G +P YL  ++ N  F EN+ E +
Sbjct: 161 GRRTGAWKVEEMDFFNAWKF-HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELL 219

Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
           L KGA  Y+E ++LL++ELR+ + YF+IL+AIA G  RFG+I +   ++   ++KYL VL
Sbjct: 220 LSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL 279

Query: 191 QRLGIVKREVPV 202
             +G ++ E PV
Sbjct: 280 SEMGYIEEETPV 291


>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
           >gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 452
           
 Score =  160 bits (400), Expect = 1e-38
 Identities = 87/204 (42%), Positives = 127/204 (61%), Gaps = 6/204 (2%)

Query: 10  GRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPL 69
           G++V++IDEFP L+E Y+PV+S+ Q+  DL L  + +MLI+ GSS+ +ME ++L YK+PL
Sbjct: 99  GKLVVVIDEFPYLIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPL 158

Query: 70  YGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVER 129
           YGR  G  ++    FF + E+  G   E L++++GVT  +P Y+  F   +  DE ++  
Sbjct: 159 YGRAQGIMKVKPFRFFDMVEWY-GRDFEKLVRLYGVTWGVPRYMEFF--REGSDEEIIRN 215

Query: 130 VLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTV 189
                +FL+ EA+ LL EELR PA Y  I++AIA G  R  EI N + +D   +  YL  
Sbjct: 216 FFDPSSFLFNEAKLLLMEELRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKT 275

Query: 190 LQRLGIVKREVPVTATMKEVSKRG 213
           LQ LGIVKR  P+T   K  +KRG
Sbjct: 276 LQELGIVKRITPIT---KRNAKRG 296


>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
           >gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 462
           
 Score =  157 bits (393), Expect = 1e-37
 Identities = 87/206 (42%), Positives = 126/206 (60%), Gaps = 6/206 (2%)

Query: 8   GDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKS 67
           G G++++I DEFP L+E  + V+S  Q+  D+ L  + I +I+ GSSV +ME EIL+YKS
Sbjct: 97  GQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKS 156

Query: 68  PLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVV 127
           PLYGR +G  ++    FF + E+  G   E L++++GVT  IP Y+  F +    D+ ++
Sbjct: 157 PLYGRASGVLKVKPFRFFDMVEWF-GKDFERLLRLYGVTWGIPKYMEFFKTGS--DDEII 213

Query: 128 ERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYL 187
                  AFL+ EA  LL EELR P  Y  I++AIA G+ R  EI    G++   +S YL
Sbjct: 214 NNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYL 273

Query: 188 TVLQRLGIVKREVPVTATMKEVSKRG 213
            VL  LGIV+REVP+T   +  +KRG
Sbjct: 274 RVLSNLGIVRREVPIT---ERKAKRG 296


>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
           >gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 451
           
 Score =  145 bits (363), Expect = 3e-34
 Identities = 84/201 (41%), Positives = 125/201 (61%), Gaps = 4/201 (1%)

Query: 13  VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
           ++IIDEFP L++    V+SL Q+A DL+LS +N  +I+ GSSVS++  ++L+ KSPLYGR
Sbjct: 90  IIIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGR 149

Query: 73  RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
           RTG  +L  + FF + EF P  + E+L++++G T  IP Y++Q      F E + + +L 
Sbjct: 150 RTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDGIPYYIIQV--KLPFWEWLEKELLS 207

Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
             +F  +E +FLL+ E  E   Y  IL+AIA G+    EI + TG+  S ++ YL  L  
Sbjct: 208 PLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLE 267

Query: 193 LGIVKREVPVTATMKEVSKRG 213
             +V REVP+T   K  SKRG
Sbjct: 268 TDLVVREVPITE--KPYSKRG 286


>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
           >gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 319
           
 Score =  143 bits (357), Expect = 2e-33
 Identities = 74/165 (44%), Positives = 110/165 (65%), Gaps = 2/165 (1%)

Query: 47  MLIIYGSSVSVMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVT 106
           MLI+ GS VS ME  IL+ KSP+YGRRTG W++ E+ FF + +F P   IE  +K++GV 
Sbjct: 1   MLILCGSLVSFMEG-ILSGKSPIYGRRTGTWKVEEMSFFDVLKFHP-IDIETAIKIYGVF 58

Query: 107 GEIPAYLLQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGR 166
           G +P Y + +   K F EN+ + VL KGA  Y+E ++LL+EELR+ + YF+IL+AI+ G 
Sbjct: 59  GGVPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGY 118

Query: 167 NRFGEIVNATGLDKSLVSKYLTVLQRLGIVKREVPVTATMKEVSK 211
           +RFG+I +A  ++   + KYL VL+ +G ++ E P+    K V K
Sbjct: 119 SRFGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRGKTVYK 163


>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
           jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
           HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
           hypothetical protein MJECL04 - Methanococcus jannaschii
           plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
           jannaschii predicted coding region MJECL04
           [Methanococcus jannaschii]
           Length = 439
           
 Score =  136 bits (339), Expect = 2e-31
 Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 4/201 (1%)

Query: 13  VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
           ++IIDEFP L++    VLSL Q+  D+ L  T   LII GSS+S+M  ++L+YKSPLYGR
Sbjct: 90  IIIIDEFPNLIKENPNVLSLFQRIVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGR 149

Query: 73  RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
           +TG  ++  + F ++ EF P    E+L++++G    IP YL +      F + + + +  
Sbjct: 150 KTGVLKIKPLKFKHLKEFFPKAIWEELVEIYGFADGIPYYLEKVKL--PFWDYLDKEIKR 207

Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
             +FL  E +FL++ E  EP  Y  IL+AIA G +  GEI N  G   S ++ YL  L  
Sbjct: 208 VDSFLRYEVDFLMKYEFEEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIE 267

Query: 193 LGIVKREVPVTATMKEVSKRG 213
           +  ++R+ P+T ++K  SK+G
Sbjct: 268 VEFIERQTPITESVK--SKKG 286


>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
           >gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 459
           
 Score =  134 bits (333), Expect = 1e-30
 Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 2/197 (1%)

Query: 11  RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
           + ++I+DEF   ++  R ++S LQ+AWD   S+  +ML++ GS + +M  E+L+Y SPLY
Sbjct: 99  KTLIILDEFSYAIKSDRTIVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLY 158

Query: 71  GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
           GRRT  + L  +  F   +F   + +   ++++ + G IPAYL+  S  +     + E  
Sbjct: 159 GRRTMSFHLKPLTLFNSLKFFDSFEVG--LEMYMLVGGIPAYLIIASRYEDTRRFIEETF 216

Query: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
           L    F Y+E   LL  ELRE   YF+IL A ASG+ R  EI +  GL+   +  YL  L
Sbjct: 217 LRTEGFFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTL 276

Query: 191 QRLGIVKREVPVTATMK 207
            RLG ++RE+P+    K
Sbjct: 277 VRLGFIEREIPIARNDK 293


>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
           >gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 456
           
 Score =  129 bits (321), Expect = 3e-29
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 4/204 (1%)

Query: 4   AERIGDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEIL 63
           AE++ D   ++++DEF   ++  R +LS LQ+ WD  LS   +ML+I GS + +M  ++L
Sbjct: 93  AEKVDD--CLIVLDEFTYAIKSERKILSDLQRTWDDILSEKKVMLVISGSLLGMMWDDVL 150

Query: 64  AYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFD 123
           +Y SPLYGRRT    L   PF Y          E  ++V+ + G IP+YL       + +
Sbjct: 151 SYASPLYGRRTRSMNLK--PFDYPNALKFFSDPEFGIRVYMLVGGIPSYLKLAGRYNTVE 208

Query: 124 ENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183
           E + E  L    F Y+E   LL EELRE   YF+IL+AIA G  R   I N  GL    V
Sbjct: 209 EFIREEFLSDYGFFYDEPYVLLGEELRELKTYFSILRAIAEGNRRLERIANFIGLPMRSV 268

Query: 184 SKYLTVLQRLGIVKREVPVTATMK 207
             Y+  L RLG+V+RE P+  + K
Sbjct: 269 YPYVDTLVRLGLVERESPILGSRK 292


>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 420
           
 Score =  114 bits (283), Expect = 8e-25
 Identities = 69/189 (36%), Positives = 109/189 (57%), Gaps = 6/189 (3%)

Query: 13  VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
           ++IIDEFP +++    +LS  QK  D  L  +   LI+ GSS+S+ME + ++YKSPLYGR
Sbjct: 94  IIIIDEFPYMIKEDESILSTFQKIVDETLKGSKTKLILLGSSISMME-DAISYKSPLYGR 152

Query: 73  RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
           RT    L E+ F  +  F   +++ D + V+G  G +P YL +  +   F + +   +  
Sbjct: 153 RTASIELKELKFKDLKGF--NFSLIDAIHVYGFAGGVPFYLTK--AKTPFLKWINAELKE 208

Query: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
             +F+ +E +F+LR E  E   Y  IL AI+SG+N  GEI +   +    VS YL  L++
Sbjct: 209 VDSFIKDEIDFMLRYEFSEIGTYKEILHAISSGKNTLGEIKDFVRISGD-VSSYLNKLEK 267

Query: 193 LGIVKREVP 201
           +GI+ +E P
Sbjct: 268 IGIIGKEFP 276


>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
           >gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 320
           
 Score =  108 bits (266), Expect = 8e-23
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 4/157 (2%)

Query: 57  VMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQF 116
           ++  ++L+YKSPLYGRRTG  +L  + FF + EF P  + E+L++++G+T  IP Y++Q 
Sbjct: 1   MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60

Query: 117 SSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNAT 176
                F E + E +    +F  +E +FLLR E  E   Y  IL+AIA G+    EI + T
Sbjct: 61  --KPPFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFT 118

Query: 177 GLDKSLVSKYLTVLQRLGIVKREVPVTATMKEVSKRG 213
           GL  S ++ YL  L    ++ REVP+T   K+ SK+G
Sbjct: 119 GLRNSDITPYLRNLIEADLIVREVPITE--KKTSKKG 153


>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
           >gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 323
           
 Score =  101 bits (249), Expect = 8e-21
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 3/161 (1%)

Query: 47  MLIIYGSSVSVMESEILAYKSPLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVT 106
           ML++ GS + +ME  +L++ SPLYGRRT  +RL  +  F    F     IE L K + + 
Sbjct: 1   MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKS-PIEGL-KFYMLL 58

Query: 107 GEIPAYLLQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGR 166
           G IPAYL+  S  ++  E V    L    + Y+E  +++  EL+E   YF+IL A++SGR
Sbjct: 59  GGIPAYLIIASRYETVGEFVEREFLTPEGYFYDEP-YIVLSELKELKTYFSILSAMSSGR 117

Query: 167 NRFGEIVNATGLDKSLVSKYLTVLQRLGIVKREVPVTATMK 207
            R  EI +  GL+   +  YL  L RLG V+RE+P+    K
Sbjct: 118 RRPSEIASEVGLEGRKIYPYLETLIRLGFVERELPIARKEK 158


>pir||G71134 hypothetical protein PH0843 - Pyrococcus horikoshii
           >gi|3257254|dbj|BAA29937.1| (AP000003) 136aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 136
           
 Score = 87.0 bits (212), Expect = 2e-16
 Identities = 46/88 (52%), Positives = 60/88 (67%)

Query: 114 LQFSSNKSFDENVVERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIV 173
           L  S   SF EN+   +L K  FLY EAEFLLR+ELREPA YFAIL+AI+  +   GEIV
Sbjct: 16  LMNSRGVSFWENIENLMLRKENFLYAEAEFLLRQELREPARYFAILRAISLRKTTHGEIV 75

Query: 174 NATGLDKSLVSKYLTVLQRLGIVKREVP 201
           + TG D+ +VSKYL  L R+ ++++  P
Sbjct: 76  DYTGFDRGIVSKYLDNLARIRVIRKVHP 103


>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
           >gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 472
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 9/209 (4%)

Query: 9   DGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSP 68
           D ++V+I+DEF         + S LQK WDLK   +N++LI  GS V +M+   +  K P
Sbjct: 108 DIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEP 167

Query: 69  LYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVE 128
           L+GR     +L    F+    F+      D ++++   G +P YLL       ++ N +E
Sbjct: 168 LFGRVDEWIKLKPFDFWRAYNFV-NIPARDFVEIFSALGGMPKYLLYL--RHYYNGNTIE 224

Query: 129 --RVLFKGAF--LYEEAEFLLREEL-REPANYFAILQAIASGRNRFGEIVNATGLDKSLV 183
             R LF      L EE   +L+ E  R   +YF+IL+A++ G     EI + TGL    V
Sbjct: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284

Query: 184 SKYLTVL-QRLGIVKREVPVTATMKEVSK 211
            KYL+ L      + +EVP T   ++  K
Sbjct: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRK 313


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75333980
Number of Sequences: 2977
Number of extensions: 3024226
Number of successful extensions: 6901
Number of sequences better than 1.0e-10: 19
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6859
Number of HSP's gapped (non-prelim): 20
length of query: 215
length of database: 189,106,746
effective HSP length: 54
effective length of query: 161
effective length of database: 156,788,448
effective search space: 25242940128
effective search space used: 25242940128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)