BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1420 (PAB1420) DE:Hypothetical protein
(442 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75057 hypothetical protein PAB1420 - Pyrococcus abyssi (st... 890 0.0
pir||D71115 hypothetical protein PH0691 - Pyrococcus horikoshii ... 267 2e-70
pir||G64492 hypothetical protein MJ1544 - Methanococcus jannasch... 243 2e-63
gb|AAK41695.1| Conserved hypothetical protein [Sulfolobus solfat... 174 2e-42
gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfat... 171 2e-41
gb|AAK41527.1| Conserved hypothetical protein [Sulfolobus solfat... 166 5e-40
sp|P44099|YA38_HAEIN HYPOTHETICAL PROTEIN HI1038 >gi|1074621|pir... 143 5e-33
emb|CAC11862.1| (AL445065) conserved hypothetical protein [Therm... 104 2e-21
emb|CAA75851.1| (Y15898) hypothetical protein [Coxiella burnetii] 80 5e-14
gb|AAK42154.1| Hypothetical protein [Sulfolobus solfataricus] 73 9e-12
>pir||C75057 hypothetical protein PAB1420 - Pyrococcus abyssi (strain Orsay)
>gi|5458865|emb|CAB50352.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 442
Score = 890 bits (2275), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MYTLGYQKCKISVPLSSHMLDKTLVKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGP 60
MYTLGYQKCKISVPLSSHMLDKTLVKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGP
Sbjct: 1 MYTLGYQKCKISVPLSSHMLDKTLVKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGP 60
Query: 61 RRAGKTHYLFSIIKDNPERYLYVDFENPIFHPMKPRDFIVVLDAYRELYPEFEKPIVMLD 120
RRAGKTHYLFSIIKDNPERYLYVDFENPIFHPMKPRDFIVVLDAYRELYPEFEKPIVMLD
Sbjct: 61 RRAGKTHYLFSIIKDNPERYLYVDFENPIFHPMKPRDFIVVLDAYRELYPEFEKPIVMLD 120
Query: 121 EVQAVPDWERIVRYLLDGEYEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRF 180
EVQAVPDWERIVRYLLDGEYEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRF
Sbjct: 121 EVQAVPDWERIVRYLLDGEYEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRF 180
Query: 181 KGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILER 240
KGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILER
Sbjct: 181 KGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILER 240
Query: 241 HRIKNIYLLNELLYFSIRSYAKYVSVDSLYRLFKGRLKVTKRTIANYLNYLEESFAIFLL 300
HRIKNIYLLNELLYFSIRSYAKYVSVDSLYRLFKGRLKVTKRTIANYLNYLEESFAIFLL
Sbjct: 241 HRIKNIYLLNELLYFSIRSYAKYVSVDSLYRLFKGRLKVTKRTIANYLNYLEESFAIFLL 300
Query: 301 RRYEPSIKGRITSPRKLYLIDTGFSMFGEKDLSRDVENVVFLELVRRNPWAELYYWKSPN 360
RRYEPSIKGRITSPRKLYLIDTGFSMFGEKDLSRDVENVVFLELVRRNPWAELYYWKSPN
Sbjct: 301 RRYEPSIKGRITSPRKLYLIDTGFSMFGEKDLSRDVENVVFLELVRRNPWAELYYWKSPN 360
Query: 361 HEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEK 420
HEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEK
Sbjct: 361 HEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEK 420
Query: 421 VEMYGMKGVIKIVPLIKWLLNY 442
VEMYGMKGVIKIVPLIKWLLNY
Sbjct: 421 VEMYGMKGVIKIVPLIKWLLNY 442
>pir||D71115 hypothetical protein PH0691 - Pyrococcus horikoshii
>gi|3257099|dbj|BAA29782.1| (AP000003) 439aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 439
Score = 267 bits (675), Expect = 2e-70
Identities = 162/429 (37%), Positives = 251/429 (57%), Gaps = 17/429 (3%)
Query: 25 VKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFS----IIKDNP--E 78
++ I+EFH+ +V RELK+ +AI + G RR GKT+ L+ ++K+ E
Sbjct: 14 LEEVIVEFHKLGIPEVRIRELKLPTNLSQAIVVYGLRRTGKTYLLYQTMLKLMKEGLPIE 73
Query: 79 RYLYVDFENPIFHPMKPRDFIVVLDAYRELYPEFEKPIVMLDEVQAVPDWERIVRYLLDG 138
R Y++FE+ + +D +++ Y + P+ + DEVQ VP WE+ VR +L+
Sbjct: 74 RLFYINFEDERLEDITGKDLSKIVELYYKYNPDASLMYLFFDEVQNVPSWEKFVRRILER 133
Query: 139 EY-EVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRFKGLNYEGRSFYRNYNRI 197
+ +++TGSSS LL E+A+ LRGR++++ LFPLSFREFL FKG ++ +I
Sbjct: 134 KNARIFITGSSSNLLSKEIATALRGRSLSFRLFPLSFREFLTFKGSKFKEPLIEAERGKI 193
Query: 198 SSLLDEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILERHRIKNIYLLNELLYFSI 257
L+EY+ YG +PE+ +K L+EYL+++I +D++ER+ I+ I+ + L+
Sbjct: 194 KRYLEEYVEYGGFPEIVDYPPLLKIKTLQEYLDLIIYKDLIERYGIEKIHAMKGLIRVIT 253
Query: 258 RSYAKYVSVDSLYRLFKG-RLKVTKRTIANYLNYLEESFAIFLLRRYEPSIKGRITSPRK 316
R++A+ S+ L+ + L ++K I Y +YLE+ I +RR S + S K
Sbjct: 254 RNFARRSSIRKLHNMLSSLGLNLSKSKIYEYFSYLEDIGFIIPVRRLHFSEVESLRSIPK 313
Query: 317 LYLIDTGF-SMFGEKDLSRDVENVVFLELVRR----NPWAELYYWKSPNHEVDFVVVERG 371
LY+ D GF ++ G KD+ +EN+V LEL+RR P E+ YW EVDFVV+
Sbjct: 314 LYVADVGFPTVLGVKDIGHRIENIVALELLRRKYYQEPRLEIRYWMDSKGEVDFVVLTGF 373
Query: 372 KVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEKVEMYGMKGVIK 431
KVKELIQVS + + +T++RE ALL AS+ L C +L V+T + EG E+Y K V +
Sbjct: 374 KVKELIQVSYSIEDIETKQREVEALLRASRLLKCNNLTVVTWDYEG---TEVYKGKRV-R 429
Query: 432 IVPLIKWLL 440
VPL KWLL
Sbjct: 430 FVPLWKWLL 438
>pir||G64492 hypothetical protein MJ1544 - Methanococcus jannaschii
>gi|1592175|gb|AAB99562.1| (U67595) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 441
Score = 243 bits (615), Expect = 2e-63
Identities = 161/443 (36%), Positives = 254/443 (56%), Gaps = 31/443 (6%)
Query: 17 SHMLDKTLVKRYI----LEFHERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSI 72
S M+DK ++ + LE ++ +KV+ R++++ + K I G RR GKT++LF I
Sbjct: 13 SSMIDKKILFEEVILDNLEIAKK--AKVINRDIEIKLIPNKIKVIYGVRRGGKTYFLFQI 70
Query: 73 I-KDNPERYLYVDFENPIFHPMKPRDFIVVLDAYRELYPEF----EKPIVMLDEVQAVPD 127
I K + ++Y++FE+ R + LD EL + DE+Q+V +
Sbjct: 71 INKHFKDDFIYINFEDE-------RLINIALDELNELLKIALSIKNTKNLFFDEIQSVDN 123
Query: 128 WERIVRYLLDGEYEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRFKGLNYEG 187
W++ VR L D + +++TGSSSKLL E+A+ LRGR + + PL+F+EFL+FK N +
Sbjct: 124 WDKFVRRLNDSGFNIFITGSSSKLLSKEIATSLRGRNLKTEILPLNFKEFLKFKNFNVKK 183
Query: 188 RSFYRNYNRISSLLDEYLWYGAYPEVALA-DKSVKELILREYLNVLIKRDILERHRIKNI 246
R + L+E++ +G +PE+ L D+++K+ IL+EYL+ + RD++ERH I+NI
Sbjct: 184 RYSTIEKAELLKYLNEFIKFGGFPEITLIDDENIKKEILKEYLDGIFYRDVVERHSIRNI 243
Query: 247 YLLNELLYFSIRSYAKYVSVDSLYRLFKG-RLKVTKRTIANYLNYLEESFAIFLLRRYEP 305
+ L I +A +S+ + L K K+++ I NYL Y +++ IFLL +
Sbjct: 244 KEIKVLRNILINLFANEISIKKIANLLKEFNTKISRECIYNYLEYFSDAYLIFLLNNF-- 301
Query: 306 SIKGRITSPRKLYLID--TGFSMFGEKDLSRDVENVVFLELVRRN--PWAELYYWKSPNH 361
S K + S KLY+ID FS+ K+ R +EN+VFLEL RR L+Y K N+
Sbjct: 302 SYKTKTISYSKLYVIDGMWNFSLSFSKNKGRILENLVFLELRRRGFVENENLFYVKRKNY 361
Query: 362 EVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASK--RLACRDLKVITLNEEGEE 419
EVDF++ G+ KELIQV +L+ E ++RE A A K +L +LK+IT N+EG E
Sbjct: 362 EVDFLIF--GENKELIQVCYELN-ETNKEREIKAYEKAIKDLKLDNVNLKIITYNDEGFE 418
Query: 420 KVEMYGMKGVIKIVPLIKWLLNY 442
K+ + + +I+IVP KW L Y
Sbjct: 419 KITVDDKEHLIEIVPFWKWSLTY 441
>gb|AAK41695.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 410
Score = 174 bits (436), Expect = 2e-42
Identities = 131/410 (31%), Positives = 222/410 (53%), Gaps = 30/410 (7%)
Query: 34 ERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSIIKDNPERYLYVDFENPIFHPM 93
ERD +P LK +V A+AI+G RR+GK+ ++K +++ YV+F++ F+ +
Sbjct: 27 ERD----VPNLLKYLEVPN-ALAILGVRRSGKSTLSLLLLKR--KKFAYVNFDDERFYNL 79
Query: 94 KPRDFIVVLDAYRELYPEFEKPIVMLDEVQAVPDWERIVRYLLDGEYEVYLTGSSSKLLP 153
D VL A ELY + ++LDE+ V WE V L D + ++ +TGS+SK+L
Sbjct: 80 NIGDLNKVLQAIYELYG-VDVDYIVLDEIHNVKGWELFVSRLRDVK-KLIITGSNSKMLS 137
Query: 154 MEVASHLRGRAITYTLFPLSFREFLRFKGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEV 213
E+A++L GR Y LFP SF+E+L++K + E S R + + + L++Y G +PE
Sbjct: 138 GELATYLTGRHSDYILFPFSFQEYLKYKEVKVEYFS-TRVISTLKNELEKYTEVGGFPEA 196
Query: 214 ALADKSVKELILREYLNVLIKRDILERHRIKNIYLLNELLYFSIRSYAKYVSVDSLYRLF 273
+ K +I Y ++L K DI+ R++I+ I E I Y+ +S+ S+ ++
Sbjct: 197 LMLGKEQVNVI---YNDILFK-DIVSRYKIREIEKFREFARTVISYYSNEISLSSIAKI- 251
Query: 274 KGRLKVTKRTIANYLNYLEESFAIFLLRRYEPSIKGRITSPRKLYLIDTGF---SMFGEK 330
L + KRT+ + + L E++ F + RY +K R+T +K+Y++D G K
Sbjct: 252 ---LGLNKRTVEKWASGLREAYLTFFIPRYGEKLKQRLTYNKKVYVVDVGIVSNLAIKGK 308
Query: 331 DLSRDVENVVFLELVRRNPWAELYYWKSPNHEVDFVVVERGKVKELIQVSIDLSEEKTRK 390
D R +EN+V ++L+R E Y+ N+EVDF K LIQV+ + +K
Sbjct: 309 DKGRIIENLVAIKLLRELQGEEKLYYMRNNYEVDFY---DEKNSRLIQVT--YTSDKIEN 363
Query: 391 REFLALLNASKRLACRDLKVITLNEEGEEKVEMYGMKGVIKIVPLIKWLL 440
RE L+ + + L +IT + EEK+++ G+ I+++PL ++LL
Sbjct: 364 REIRGLIEGYRLTKAKKLLIITW--DLEEKIQVEGVN--IEVLPLYRFLL 409
>gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 432
Score = 171 bits (428), Expect = 2e-41
Identities = 123/423 (29%), Positives = 214/423 (50%), Gaps = 33/423 (7%)
Query: 34 ERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSIIK-------DNPERYLYVDFE 86
ER++S L L+ KG AI++IG +R+GK+ + ++K ++P L V+FE
Sbjct: 25 EREYSDQLLDLLE----KGLAISVIGVKRSGKSTIINQVVKKLIEKKGEDPFDTLIVNFE 80
Query: 87 NPIFHPMKP-RDFIVVLDAYRELYPEFE--KPIVMLDEVQAVPDWERIVRYLLDG-EYEV 142
+ F ++ D + + Y+EL + + KP + LDEVQ + WE VR ++D E +
Sbjct: 81 DSRFGDIRTANDLFSLYELYKELRKKKKDSKPYIFLDEVQKIKGWEGFVRSIVDRKEANI 140
Query: 143 YLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRFKGLNYEGR-SFYRNYNRISSLL 201
++GS++ + V L GR + +FPLSF+EFL FK + E + I L
Sbjct: 141 VISGSTASVNNKSVREVLAGRHLILEVFPLSFKEFLEFKNIRLETELDMIAKESEIKVLF 200
Query: 202 DEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILERHRIKNIYLLNELLYFSIRSYA 261
EYL YG +P V ++ ++++L+ Y +++ K D++ I+N L F I +
Sbjct: 201 SEYLSYGGFPLVVSNERDKEKILLQLYEDIIFK-DVISECNIRNEEEAKNLAIFYISNVG 259
Query: 262 KYVSVDSLYRLFKGRLKVTKRTIANYLNYLEESFAIFLLRRYEPSIKGRITSPRKLYLID 321
+ +R L + R + Y ++ ++ IF ++ P + +K+Y ID
Sbjct: 260 NKIR----FRKISRSLNIPFRNVQRYTECMKNAYLIFFVKALSPKLSEMAKYDKKVYCID 315
Query: 322 TGFSMFGEKDLSRDV----ENVVFLELVRRNPWAELYYWKSPNHEVDFVVVERGKVKELI 377
G S L++++ EN++FLEL+RR ++Y++ EVDFVV + +++E+
Sbjct: 316 NGISNVLGYRLNQNIGSLFENLIFLELLRRYGINNVFYYRGRRGEVDFVVKVKDEIREIY 375
Query: 378 QVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEKVEMYGMKGVIKIVPLIK 437
QV+ LS+ + + L K A +IT ++EGE KV ++K+V K
Sbjct: 376 QVTYQLSDVERELKGIEEFLKIRKTKA----YIITFDDEGEIKVG----DDLVKVVKGWK 427
Query: 438 WLL 440
WLL
Sbjct: 428 WLL 430
>gb|AAK41527.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 452
Score = 166 bits (416), Expect = 5e-40
Identities = 124/403 (30%), Positives = 210/403 (51%), Gaps = 28/403 (6%)
Query: 39 KVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSIIKDNPERYLYVDFENPIFHPMKPRDF 98
+++ R S A I GPRRAGK+ +F++ + L VDF++ +K +
Sbjct: 64 RIITRHYNYSITYNNAYLITGPRRAGKS--IFTVQLTKGKEILRVDFDDERLSGIKANEL 121
Query: 99 IVVLDAYRELYPEFEKPIVMLDEVQAVPDWERIVRYLLDGEYEVYLTGSSSKLLPMEVAS 158
L+A ++ + E +++LDE+Q V WE V + + Y V +TGS+++L+ E+A+
Sbjct: 122 NKFLEAGYQIKKKIE--VIILDEIQNVKGWELFVSRIRE-IYPVIVTGSNARLMSSEMAT 178
Query: 159 HLRGRAITYTLFPLSFREFLRFKGLNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALADK 218
+L GR + + +FP SF+E+LR+K + E + R R+ L YL G +PE DK
Sbjct: 179 YLTGRHMDFLVFPFSFKEYLRYKDVKVEETT--RGIARLKEELRNYLQQGGFPETFKFDK 236
Query: 219 SVKELILREYLNVLIKRDILERHRIKNIYLLNELLYFSIRSYAKYVSVDSLYRLFKGRLK 278
+ LR + +I RD++ R + + + L F + + K VS + F
Sbjct: 237 NE---YLRNLYSDIITRDVIIRCKTRKD--VKGLADFLLENIGKEVSTRRVGNAF----N 287
Query: 279 VTKRTIANYLNYLEESFAIFLLRRYEPSIKGRITSPRKLYLIDTG-FSMFGEKDLSRDVE 337
++ +++ NY L ++ ++R+ R T PRK+Y+IDTG F+ + + + +E
Sbjct: 288 LSHQSVENYFYCLSNAYLFLFVKRFTGKSLERYTLPRKVYVIDTGLFNTYKRLQMGKMIE 347
Query: 338 NVVFLELVRRNPWAELYYWKSPNHEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALL 397
N+VFLEL +R E+YY+ + N EVDF++ K K IQV+ D E RE+ L+
Sbjct: 348 NLVFLELYKRY-GQEVYYYSNGNAEVDFII----KDKFAIQVTYD--EGGIDDREYKGLV 400
Query: 398 NASKRLACRDLKVITLNEEGEEKVEMYGMKGVIKIVPLIKWLL 440
S+R L +IT + EG+E I ++PL K+L+
Sbjct: 401 RFSERFKDYKLIIITWDREGKE----IRNGKEITLIPLWKFLV 439
>sp|P44099|YA38_HAEIN HYPOTHETICAL PROTEIN HI1038 >gi|1074621|pir||I64018 hypothetical
protein HI1038 - Haemophilus influenzae (strain Rd KW20)
>gi|1574071|gb|AAC22698.1| (U32784) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 400
Score = 143 bits (356), Expect = 5e-33
Identities = 114/440 (25%), Positives = 218/440 (48%), Gaps = 55/440 (12%)
Query: 15 LSSHMLDKTLVKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSIIK 74
+S M+ + + +++F + DF KV I G RR+GK+ L +
Sbjct: 1 MSKAMISRENYLQQLIQFKDTDFIKV----------------ISGVRRSGKSVLLMQY-R 43
Query: 75 DN-------PERYLYVDFENPIFHPMKP-RDFIVVLDAYRELYPEFEKPIVMLDEVQAVP 126
D E LY++FE+ + +K +DF ++ ++ EK ++DE+Q V
Sbjct: 44 DYLQQQGIASENILYLNFESFEYQWVKDAQDFQQLIQ--EKMPSSQEKIYFLIDEIQFVE 101
Query: 127 DWERIVRYL-LDGEYEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRFKGLNY 185
W++IV L + ++ +TGS++ LL E+A+ L GR + ++PLSF+EFL K ++
Sbjct: 102 GWQKIVNALRVSFNTDIVITGSNANLLSGELATLLSGRYVEIKIYPLSFKEFLHAKNVDS 161
Query: 186 EGRSFYRNYNRISSLLDEYLWYGAYPEVALADKSVKELILREYLNVLIKRDILERHRIKN 245
+ R + L EY YG +P V +AD+ +KE IL + ++ DI R +K+
Sbjct: 162 QSR-------LVDKLYSEYEKYGGFPSVVMADEPLKETILSGIFDSIVLNDIAHRAGVKD 214
Query: 246 IYLLNELLYFSIRSYAKYVSVDSLYR-LFKGRLKVTKRTIANYLNYLEESFAIFLLRRYE 304
++L ++ F + + V+ + L R+ + TI+ YL+ LE +F + ++Y+
Sbjct: 215 THILKSVILFLADNVGQLVNPSKISNTLTSERVPTSNHTISKYLDLLENAFLFYKAKQYD 274
Query: 305 PSIKGRITSPRKLYLIDTGF--SMFGEK--DLSRDVENVVFLELVRRNPWAELYYWKSPN 360
KG + + K +++D G G+K + + +EN+VF+EL+RR ++ K +
Sbjct: 275 IRGKGYLKTNAKYFIVDNGLRRHAIGKKGANYANRLENIVFIELLRRGYSVDV--GKLDS 332
Query: 361 HEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGEEK 420
E+DF+ + ++ +QV+ ++ E L + + + K I + + E+
Sbjct: 333 KEIDFIARKADEIL-YVQVAFEIPENTHETDNLLHIKD--------NYKKILITGKYYEQ 383
Query: 421 VEMYGMKGVIKIVPLIKWLL 440
E+ G I+++ ++ WLL
Sbjct: 384 TEIDG----IEVIYVVDWLL 399
>emb|CAC11862.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 441
Score = 104 bits (258), Expect = 2e-21
Identities = 97/352 (27%), Positives = 168/352 (47%), Gaps = 51/352 (14%)
Query: 55 IAIIGPRRAGKTHYLFSIIKD------NPERYLYVDFENPIFHPMKPRDFIVVLDAYREL 108
+ G RR GKT ++ II D PER LY F+ D ++ Y E
Sbjct: 44 VLFYGLRRVGKTTIMYQIISDLLKDGTEPERILYFSFDE------SSGDIDEMISLYAET 97
Query: 109 YPEFEKPI-------VMLDEVQAVPDWERIVRYLLD--GEYEVYLTGSSSKLLPMEVASH 159
+KPI + LDEVQ DWE ++ D + L+GSSS + +
Sbjct: 98 V--LKKPITEAPRIYMFLDEVQKAEDWENRIKIFYDLYPNIKFVLSGSSSLNVLKGSSET 155
Query: 160 LRGRAITYTLFPLSFREFLRFKG--LNYEGRSFYRNYNRISSLLDEYLWYGAYPEVALAD 217
L GR + + PLSF EF + KG + YE ++ R+ +S +L EY+ G +PE+ +
Sbjct: 156 LAGRIVLVKIEPLSFSEFCKLKGHEVPYEKVAYARDI--LSPMLMEYIEKGGFPELVWEN 213
Query: 218 KSVKELILREY-----LNVLIKRDILERHRIKNIYLLNELLYFSIRSYAKYVSVDSLYRL 272
K +R Y ++ ++ RDI + I+++ L+ L+ + + +++D +
Sbjct: 214 DPYK---IRSYVRSIVIDRIVTRDIPQEFGIRDMDLMRRLMETILMNPGVILNLDKISSS 270
Query: 273 FKGRLKVTKRTIANYLNYLEESFAIFLLRRYEPSIKGRITSPRKLYLIDTGF--SMFGEK 330
F GR ++T I+N+++Y+E +F I + Y P ++ +K+Y F +M +
Sbjct: 271 F-GRNRIT---ISNFISYMEYAFLIRTVSNYRPGVEAASRKLKKVYPYTPAFYLAMLAPQ 326
Query: 331 ---DLSRDVENVVFLELVRRNPWAELYYWKSPNHEVDFVVVERGKVKELIQV 379
D + +EN + L + YY+++ N E+DF V++ G V+ I+V
Sbjct: 327 DAYDAGKLMENAMAAIL------SPGYYFRAGNTEIDF-VLDHGGVRIPIEV 371
>emb|CAA75851.1| (Y15898) hypothetical protein [Coxiella burnetii]
Length = 408
Score = 80.0 bits (194), Expect = 5e-14
Identities = 92/394 (23%), Positives = 164/394 (41%), Gaps = 55/394 (13%)
Query: 18 HMLDKTLVKRYILEFHERDFSKVLPRELKVSKVKGKAIAIIGPRRAGKTHYLFSIIKDNP 77
H +++ ++ ++ + F K+L R + K + GPR+ GKT + ++K
Sbjct: 6 HYIEQIVIA--VMSYKRPVFQKILERLREPRKT---IQVLAGPRQVGKTTLVKQLLKAIH 60
Query: 78 ERYLYVDFENPIFHPMKPRDFIVVL--DAYRELYPEF-EKPIVMLDEVQAVPDWERIVRY 134
+ Y + P F V +A R L E + +++LDEVQ +P W ++
Sbjct: 61 MPFHYASADIPTLQDT----FWVTQQWEAARLLTREAPDGALLVLDEVQKIPQWSTSIKK 116
Query: 135 LLDGE------YEVYLTGSSSKLLPMEVASHLRGRAITYTLFPLSFREFLRFKGLNYEGR 188
L D + +V L GSS L+ + L GR + L P++
Sbjct: 117 LWDEDTFNEVPLKVVLLGSSPLLIRQGLTESLAGR---FELIPITHW------------- 160
Query: 189 SFYRNYNRISSLLDEYLWYGAYP---EVALADKSVKELILREYLNVLIKRDILERHRIKN 245
SF + +D+++++G YP E ++ K+ IL + I RDIL R+
Sbjct: 161 SFQEMHEAFDWNVDQFIYFGGYPGAAEFIQDEERWKDYILHSLIETTISRDILLMVRVDK 220
Query: 246 IYLLNELLYFSIRSYAKYVSVDSLYRLFKGRLKVTKRTIANYLNYLEESFAIFLLRRYEP 305
LL L + + +S + T T+A+YL L + + + +Y
Sbjct: 221 PALLRRLFHLGCNYSGQILSYQKMLGQLHDAGNAT--TLAHYLELLTGAGMLMGIPKYSI 278
Query: 306 SIKGRITSPRKLYLIDTGFSM------FGEKDLSRD-----VENVVFLELVRRNPWAELY 354
+ S KL +++T F E +R+ VE+ V LV N +Y
Sbjct: 279 KDTRQKASSPKLQVLNTALISAQSQIHFNEAKKNRNYWGRLVESAVGAHLV--NQCCNVY 336
Query: 355 YWKSPNHEVDFVVVERGKVKELIQVSIDLSEEKT 388
YW+ N EVDF++ + K+++ + + +KT
Sbjct: 337 YWRERNKEVDFIL---SRHKQIMAIEVKSGLKKT 367
>gb|AAK42154.1| Hypothetical protein [Sulfolobus solfataricus]
Length = 141
Score = 72.6 bits (175), Expect = 9e-12
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
Query: 302 RYEPSIKGRITSPRKLYLIDTGFSM---FGEKDLSRDVENVVFLELVRRNPWAELYYWKS 358
RY + R+T +K+Y++D G KD R +EN+V L+L+R N LYY K
Sbjct: 8 RYGEKPRERLTFNKKVYVVDQGIISRVALRAKDRGRVMENLVALKLLRDNQLKGLYYVKG 67
Query: 359 PNHEVDFVVVERGKVKELIQVSIDLSEEKTRKREFLALLNASKRLACRDLKVITLNEEGE 418
+ E+DF + L+QV+ + +K +RE +LL A + L ++L +IT + EGE
Sbjct: 68 KDFEIDFYDEVNSR---LLQVT--YASDKIEEREIRSLLKAEEMLRTKELIMITYDIEGE 122
Query: 419 EKVEMYGMKGVIKIVPLIKWLLN 441
E+ E G K IK+VPL K+LL+
Sbjct: 123 EERE--GKK--IKLVPLYKFLLS 141
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161522870
Number of Sequences: 2977
Number of extensions: 6900542
Number of successful extensions: 17515
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17470
Number of HSP's gapped (non-prelim): 10
length of query: 442
length of database: 189,106,746
effective HSP length: 55
effective length of query: 387
effective length of database: 156,189,961
effective search space: 60445514907
effective search space used: 60445514907
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)