BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1421 (PAB1421) DE:Hypothetical protein
         (264 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75057 hypothetical protein PAB1421 - Pyrococcus abyssi (st...   527  e-149
emb|CAA56169.1| (X79777) ORFX [Pyrococcus furiosus]                   165  6e-40

>pir||A75057 hypothetical protein PAB1421 - Pyrococcus abyssi (strain Orsay)
           >gi|5458863|emb|CAB50350.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 264
           
 Score =  527 bits (1343), Expect = e-149
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MIFKPRTKLKFIDGINHGSHFDAFCERAEYALSAIKSIMEEKKPRYVTFEKRKLFSRKVF 60
           MIFKPRTKLKFIDGINHGSHFDAFCERAEYALSAIKSIMEEKKPRYVTFEKRKLFSRKVF
Sbjct: 1   MIFKPRTKLKFIDGINHGSHFDAFCERAEYALSAIKSIMEEKKPRYVTFEKRKLFSRKVF 60

Query: 61  ELEVYDVDGLGILVARKLSNVDPLTAYPVIEGSNEIEAEVNEILEWREWPEANVSASLET 120
           ELEVYDVDGLGILVARKLSNVDPLTAYPVIEGSNEIEAEVNEILEWREWPEANVSASLET
Sbjct: 61  ELEVYDVDGLGILVARKLSNVDPLTAYPVIEGSNEIEAEVNEILEWREWPEANVSASLET 120

Query: 121 GAFINFFSTDYVFRKQQYLSSSKLTISLALVAYKATTEGFEEKVVGKVDGKDVVLNLEEA 180
           GAFINFFSTDYVFRKQQYLSSSKLTISLALVAYKATTEGFEEKVVGKVDGKDVVLNLEEA
Sbjct: 121 GAFINFFSTDYVFRKQQYLSSSKLTISLALVAYKATTEGFEEKVVGKVDGKDVVLNLEEA 180

Query: 181 ELLLPASISVKGAFIDDYIVTGKVLDYREALTPCGIGYLVELKCEPLKRVTLFVHKENLE 240
           ELLLPASISVKGAFIDDYIVTGKVLDYREALTPCGIGYLVELKCEPLKRVTLFVHKENLE
Sbjct: 181 ELLLPASISVKGAFIDDYIVTGKVLDYREALTPCGIGYLVELKCEPLKRVTLFVHKENLE 240

Query: 241 GNMERGLSVKAFAWLQGRVKSVKD 264
           GNMERGLSVKAFAWLQGRVKSVKD
Sbjct: 241 GNMERGLSVKAFAWLQGRVKSVKD 264


>emb|CAA56169.1| (X79777) ORFX [Pyrococcus furiosus]
           Length = 318
           
 Score =  165 bits (413), Expect = 6e-40
 Identities = 100/266 (37%), Positives = 152/266 (56%), Gaps = 10/266 (3%)

Query: 1   MIFKPRTKLKFIDGINHGSHFDAFCERAEYALSAIKSIMEEKKPRYVTFEKRKLFSRKVF 60
           M  K   K++ I GI HGSH D     AE  LS I S+  E     V FEK ++  +K+ 
Sbjct: 1   MFIKKDNKVELIQGIPHGSHLDTVLGYAE-RLSEILSMKGEASGS-VVFEKGRIIKKKL- 57

Query: 61  ELEVYDVDGLGILVARKLSNVDP--LTAYPVIEGSNEIEAEVNEILEWREWPEANV--SA 116
           +L++YDV  LG++  R +++     LT YP++E   E+EA + ++LEW+EWPE ++    
Sbjct: 58  KLKIYDVP-LGVITFRVVTDEKNVLLTTYPMLEDLVEVEARILKVLEWKEWPEGDIVCEV 116

Query: 117 SLETGAFINFFSTDYVFRKQQYLSSSKLTISLALVAYKATTEGFEEKVVGKVDGKDVVLN 176
           S E G  I FF+ DY+ +K +Y+      + + L+ Y         K V    G+++V++
Sbjct: 117 SNEYGPQITFFAVDYLMKKDEYVRRENAKVGVGLLLYFLKVGVDARKEVQGPGGENIVID 176

Query: 177 LEEAELLLPASISVKGAFIDDYIVTGKVLDYREALTPCGIGYLVELKCEPLKRVTLFVHK 236
           L EAE+LLP +++  G FIDDYI TG V ++RE       GYL+++  EPL  V  FV K
Sbjct: 177 LSEAEVLLPGTLN--GGFIDDYIFTGHVKEFREVNVLGKDGYLLKISIEPLGLVPAFVLK 234

Query: 237 ENLEGNMERGLSVKAFAWLQGRVKSV 262
           E ++G +E+  +V    WLQG+V  V
Sbjct: 235 ERVKGEIEKDAAVYGMGWLQGKVIGV 260


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.137    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90971949
Number of Sequences: 2977
Number of extensions: 3570862
Number of successful extensions: 8100
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8096
Number of HSP's gapped (non-prelim): 2
length of query: 264
length of database: 189,106,746
effective HSP length: 56
effective length of query: 208
effective length of database: 155,591,474
effective search space: 32363026592
effective search space used: 32363026592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)