BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1422 (PAB1422) DE:Hypothetical protein
         (341 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75056 hypothetical protein PAB1422 - Pyrococcus abyssi (st...   665  0.0
pir||B71175 hypothetical protein PH0598 - Pyrococcus horikoshii ...   462  e-129

>pir||H75056 hypothetical protein PAB1422 - Pyrococcus abyssi (strain Orsay)
           >gi|5458862|emb|CAB50349.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 341
           
 Score =  665 bits (1698), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MIEDLLRVKGALEDGRVEEAIGIAERIEDPYWKSYALKWISQELVKSDVKRAREIALSIP 60
           MIEDLLRVKGALEDGRVEEAIGIAERIEDPYWKSYALKWISQELVKSDVKRAREIALSIP
Sbjct: 1   MIEDLLRVKGALEDGRVEEAIGIAERIEDPYWKSYALKWISQELVKSDVKRAREIALSIP 60

Query: 61  VPSLRRDALLYLTYELAEMSNFREAIETAKVIGDSYTKKKAFRKISNEIAEYLKERNILS 120
           VPSLRRDALLYLTYELAEMSNFREAIETAKVIGDSYTKKKAFRKISNEIAEYLKERNILS
Sbjct: 61  VPSLRRDALLYLTYELAEMSNFREAIETAKVIGDSYTKKKAFRKISNEIAEYLKERNILS 120

Query: 121 VSLSELGIDEEDIPLLEPLPKGLKFEKGKLMLTKDTSIVKGVENPSDEVVDVTKKEVESE 180
           VSLSELGIDEEDIPLLEPLPKGLKFEKGKLMLTKDTSIVKGVENPSDEVVDVTKKEVESE
Sbjct: 121 VSLSELGIDEEDIPLLEPLPKGLKFEKGKLMLTKDTSIVKGVENPSDEVVDVTKKEVESE 180

Query: 181 IVSGGEFVTEKLRIEPDNLPEPFRSSYLEEEGLKKIYEGEVEEALKILNEIEIGGPLPRI 240
           IVSGGEFVTEKLRIEPDNLPEPFRSSYLEEEGLKKIYEGEVEEALKILNEIEIGGPLPRI
Sbjct: 181 IVSGGEFVTEKLRIEPDNLPEPFRSSYLEEEGLKKIYEGEVEEALKILNEIEIGGPLPRI 240

Query: 241 LFFVGINRDLKKVVRPLDKVLLAYKAFLIYEYDEAFSIFRELFKELEKNNPWKYARLMKF 300
           LFFVGINRDLKKVVRPLDKVLLAYKAFLIYEYDEAFSIFRELFKELEKNNPWKYARLMKF
Sbjct: 241 LFFVGINRDLKKVVRPLDKVLLAYKAFLIYEYDEAFSIFRELFKELEKNNPWKYARLMKF 300

Query: 301 LSFELLSEGRKTGSKKLIEISRKLFEEAQRQSSSFSMNLFA 341
           LSFELLSEGRKTGSKKLIEISRKLFEEAQRQSSSFSMNLFA
Sbjct: 301 LSFELLSEGRKTGSKKLIEISRKLFEEAQRQSSSFSMNLFA 341


>pir||B71175 hypothetical protein PH0598 - Pyrococcus horikoshii
           >gi|3257004|dbj|BAA29687.1| (AP000002) 339aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 339
           
 Score =  462 bits (1175), Expect = e-129
 Identities = 227/341 (66%), Positives = 290/341 (84%), Gaps = 2/341 (0%)

Query: 1   MIEDLLRVKGALEDGRVEEAIGIAERIEDPYWKSYALKWISQELVKSDVKRAREIALSIP 60
           MI +LLRV+ A+E  R+++AI IAE+I D YW+SYALKWI+QEL K D K+AREIALSIP
Sbjct: 1   MISELLRVREAIERKRIDKAIKIAEKIRDSYWRSYALKWIAQELAKDDPKKAREIALSIP 60

Query: 61  VPSLRRDALLYLTYELAEMSNFREAIETAKVIGDSYTKKKAFRKISNEIAEYLKERNILS 120
           + SLRRDALLY+TYELAE+  FR+A+ETAK+I D YTK+KAFRKIS EIAE LK+ N++ 
Sbjct: 61  IISLRRDALLYVTYELAEVGKFRDAVETAKMIEDKYTKRKAFRKISTEIAEILKKSNLIE 120

Query: 121 VSLSELGIDEEDIPLLEPLPKGLKFEKGKLMLTKDTSIVKGVENPSDEVVDVTKKEVESE 180
           V+LS+LG+DEEDIPLLEPLP+G+K+EKGKL+LT+D SIVKG+E  S+EVV+V +  V+  
Sbjct: 121 VNLSDLGLDEEDIPLLEPLPEGIKYEKGKLILTEDVSIVKGIEEESNEVVEVGEPSVKRN 180

Query: 181 IVSGGEFVTEKLRIEPDNLPEPFRSSYLEEEGLKKIYEGEVEEALKILNEIEIGGPLPRI 240
           +V+  E   E++ +E  +LPEPFRSSYLEE GL+KI EG++EEA+KIL E+++GGPLPR+
Sbjct: 181 VVTFEERRGERINLE--DLPEPFRSSYLEELGLRKIEEGKLEEAVKILEELKVGGPLPRL 238

Query: 241 LFFVGINRDLKKVVRPLDKVLLAYKAFLIYEYDEAFSIFRELFKELEKNNPWKYARLMKF 300
           LFFVG   DL+KVVRP+D++LL YKAFL+Y+Y+EAFS+F  LF +L   NPWK  RL+KF
Sbjct: 239 LFFVGKCNDLRKVVRPIDRLLLVYKAFLLYDYEEAFSVFSTLFLDLMDKNPWKLLRLLKF 298

Query: 301 LSFELLSEGRKTGSKKLIEISRKLFEEAQRQSSSFSMNLFA 341
           LSFELLSEG++ G+KKLIE+S+KLF+EAQRQSSSFSMNLFA
Sbjct: 299 LSFELLSEGKRRGNKKLIEVSKKLFKEAQRQSSSFSMNLFA 339


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.137    0.371 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119942724
Number of Sequences: 2977
Number of extensions: 5201260
Number of successful extensions: 12923
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12916
Number of HSP's gapped (non-prelim): 2
length of query: 341
length of database: 189,106,746
effective HSP length: 60
effective length of query: 281
effective length of database: 153,197,526
effective search space: 43048504806
effective search space used: 43048504806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 165 (68.7 bits)