BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1426 (PAB1426) DE:Hypothetical protein
(292 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75055 hypothetical protein PAB1426 - Pyrococcus abyssi (st... 566 e-160
pir||D71105 hypothetical protein PH0613 - Pyrococcus horikoshii ... 451 e-126
pir||E75159 hypothetical protein PAB0285 - Pyrococcus abyssi (st... 193 2e-48
pir||D71181 hypothetical protein PH1729 - Pyrococcus horikoshii ... 176 3e-43
gi|11499128 conserved hypothetical protein [Archaeoglobus fulgid... 104 2e-21
pir||A70450 hypothetical protein aq_1741 - Aquifex aeolicus >gi|... 78 1e-13
>pir||H75055 hypothetical protein PAB1426 - Pyrococcus abyssi (strain Orsay)
>gi|5458854|emb|CAB50341.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 292
Score = 566 bits (1443), Expect = e-160
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MTGLQANMLLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYLIIFYLG 60
MTGLQANMLLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYLIIFYLG
Sbjct: 1 MTGLQANMLLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYLIIFYLG 60
Query: 61 GNYSEISRMPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAF 120
GNYSEISRMPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAF
Sbjct: 61 GNYSEISRMPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAF 120
Query: 121 LFLGREVTIRIISGATLIVLAIILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLS 180
LFLGREVTIRIISGATLIVLAIILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLS
Sbjct: 121 LFLGREVTIRIISGATLIVLAIILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLS 180
Query: 181 KDVSSLTLAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKS 240
KDVSSLTLAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKS
Sbjct: 181 KDVSSLTLAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKS 240
Query: 241 VSILGSQIATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLISG 292
VSILGSQIATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLISG
Sbjct: 241 VSILGSQIATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLISG 292
>pir||D71105 hypothetical protein PH0613 - Pyrococcus horikoshii
>gi|3257019|dbj|BAA29702.1| (AP000003) 285aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 285
Score = 451 bits (1149), Expect = e-126
Identities = 217/284 (76%), Positives = 257/284 (90%)
Query: 8 MLLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYLIIFYLGGNYSEIS 67
MLLG+LLALTSAFCWGT+SVLIKVGLRGK+P+SANLIRLY SS+ Y +IFY GGNY EI+
Sbjct: 1 MLLGVLLALTSAFCWGTSSVLIKVGLRGKSPVSANLIRLYFSSILYFLIFYFGGNYKEIA 60
Query: 68 RMPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAFLFLGREV 127
+P+EYHILAF SAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTI+WA+LFLGR V
Sbjct: 61 GLPLEYHILAFISAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTIIWAYLFLGRSV 120
Query: 128 TIRIISGATLIVLAIILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLSKDVSSLT 187
T+RII+GA LIV+AII+V +VE++EH+S KG+++A ITPI WSIAI IMDWLS +SSLT
Sbjct: 121 TLRIITGAVLIVIAIIMVGRVESQEHLSYKGILFALITPILWSIAIVIMDWLSNFISSLT 180
Query: 188 LAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKSVSILGSQ 247
LAGLRIIYAA+GV+ +S + IGE++++ L EV IIS+AG LGLV+GQY+FVKSVS+LGSQ
Sbjct: 181 LAGLRIIYAAVGVTFISGKFIGEIRNSNLVEVLIISTAGLLGLVVGQYSFVKSVSLLGSQ 240
Query: 248 IATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLIS 291
IATPITA+NPIIST LAI+FL E PNWKI +SL++VVLGIWLIS
Sbjct: 241 IATPITAINPIISTGLAIIFLGESPNWKIIVSLILVVLGIWLIS 284
>pir||E75159 hypothetical protein PAB0285 - Pyrococcus abyssi (strain Orsay)
>gi|5457866|emb|CAB49356.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 287
Score = 193 bits (486), Expect = 2e-48
Identities = 107/283 (37%), Positives = 171/283 (59%), Gaps = 6/283 (2%)
Query: 10 LGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYL-IIFYLGGNYSEISR 68
LG++LAL +AF W +SVL KV +R +P + N +RL+++S Y+ +I YL
Sbjct: 5 LGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYL----DLFPD 60
Query: 69 MPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAFLFLGREVT 128
+ + I+ S GF++ D+ + + ++GVSR + + +P+ T++ A FL R +
Sbjct: 61 KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN 120
Query: 129 IRIISGATLIVLA-IILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLSKDVSSLT 187
I GA LIVLA IIL+S+ + +SL+G+ + + W++A+ I DWL D S++
Sbjct: 121 ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL 180
Query: 188 LAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKSVSILGSQ 247
+ GLRI A+G + + RI EVK ++++ +I LG +LGQY FVKS+SI+ S
Sbjct: 181 ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
Query: 248 IATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLI 290
+ATP+T PI++ +AI+FLKE K+ +SLV+ LGI LI
Sbjct: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
>pir||D71181 hypothetical protein PH1729 - Pyrococcus horikoshii
>gi|3258160|dbj|BAA30843.1| (AP000007) 292aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 292
Score = 176 bits (442), Expect = 3e-43
Identities = 96/286 (33%), Positives = 170/286 (58%), Gaps = 6/286 (2%)
Query: 7 NMLLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYL-IIFYLGGNYSE 65
N LG++LA ++AF W SVL KV +R +P++ N +RL ++S YL +I YL +
Sbjct: 7 NFALGVILAFSAAFTWALTSVLSKVSMRRVSPLTLNFLRLVIASGFYLPLIIYL----NL 62
Query: 66 ISRMPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAFLFLGR 125
I I + ++ S GF+IGD+ + +KLLGVSR +T+ +P+ T++ A LGR
Sbjct: 63 IPSKGIMWWVIVVFSGIIGFMIGDWLFLEGMKLLGVSRANMLTTLHPIITMVLAHYLLGR 122
Query: 126 EVTIRIISGATLIVLAIILVSKVETEEH-VSLKGMVYAFITPISWSIAITIMDWLSKDVS 184
+ + GA LI+LA++L+ ++E ++ +G++ + + W+IAI I DWL +
Sbjct: 123 PLNAYLFLGAGLIILAVLLLLSEKSESGGINARGVLLVVVAELLWTIAILITDWLVSNEP 182
Query: 185 SLTLAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKSVSIL 244
+ +A LRI +G ++ E++ L ++ ++ LG ++GQY F+KS+S++
Sbjct: 183 PVLIAALRISSGILGGLPFLPKMWREIRKLRLGDMGLVFVISLLGTIVGQYLFIKSISLV 242
Query: 245 GSQIATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLI 290
S +ATP+T PI+++ LA++FL+E K+ S+++ +GI +I
Sbjct: 243 SSTVATPVTESTPIMASLLAVVFLREKITSKLVASMMLSFIGILII 288
>gi|11499128 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136691|sp|O28739|YF33_ARCFU HYPOTHETICAL PROTEIN
AF1533 >gi|7483136|pir||D69441 conserved hypothetical
protein AF1533 - Archaeoglobus fulgidus
>gi|2649032|gb|AAB89716.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 278
Score = 104 bits (256), Expect = 2e-21
Identities = 67/282 (23%), Positives = 143/282 (49%), Gaps = 10/282 (3%)
Query: 9 LLGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYLIIFYLGGNYSEISR 68
+L IL++LT+A CW + + G++ + +AN R +++ +L + I
Sbjct: 1 MLEILMSLTAAICWAFNGIAYRKGVKDVSAFTANFHRTLFATVYFLPLALRDFPGVVID- 59
Query: 69 MPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAFLFLGREVT 128
++ ++ SA F IGD YF++LK VS +P +STYP++ +L + + G E++
Sbjct: 60 --LQTALVLVISAMLSFYIGDLSYFASLKRSPVSIALPASSTYPVYVVLLSTVIYGAELS 117
Query: 129 IRIISGATLIVLAIILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLSKDVSSLTL 188
+ + A L+ +A+ ++ + E G+ YA + SW++AI +D+L+ + +
Sbjct: 118 LNALISAILVFVAVYII--YGSGEKGETSGLFYALLAAFSWALAILTLDFLTDRLPVSIV 175
Query: 189 AGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKSVSILGSQI 248
A +R++ I L+S+ + S ++ S + L+LG F+ ++ + S
Sbjct: 176 AFVRLLLCLI---LLSFTAKKDELSTEIR--LFFRSVRGIFLLLGIMLFITAIKVSSSWN 230
Query: 249 ATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLI 290
++ +P+ + +FLKE ++++ + +++L I L+
Sbjct: 231 VVQPSSTSPVFAAIFGAIFLKERISFRLVAGIFVIILAILLL 272
>pir||A70450 hypothetical protein aq_1741 - Aquifex aeolicus
>gi|2984057|gb|AAC07598.1| (AE000754) putative protein
[Aquifex aeolicus]
Length = 143
Score = 78.0 bits (189), Expect = 1e-13
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Query: 9 LLGILLALTSAFCWGTASVLIKVGLRGKTPISANLI--RLYMSSLAYLIIFYLGGNYSEI 66
L + AL +AF WGTA + K+G++G+ P A + L +SLA++ + L N
Sbjct: 4 LKAVFWALLAAFIWGTAPIFFKLGMKGEMPTLAGIFVHNLTATSLAFIGLLLLREN---- 59
Query: 67 SRMPIEYHILAFTSAQFGFVIGDYF----YFSALKLLGVSRTVPITSTYPLWTILWAFLF 122
P Y + S G ++G + Y+ A+K+ VS P+ ++ PL++ L A+L
Sbjct: 60 ---PFAYPLKEILSVALGGILGGFLGLWVYYKAVKVGDVSIVAPVAASSPLFSTLLAYLI 116
Query: 123 LGREVTIRIISGATLIVLAIILVS 146
LG ++ + I GA LIVL + LVS
Sbjct: 117 LGEGLSFQKIIGALLIVLGVALVS 140
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.141 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96441453
Number of Sequences: 2977
Number of extensions: 3646397
Number of successful extensions: 14570
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14546
Number of HSP's gapped (non-prelim): 7
length of query: 292
length of database: 189,106,746
effective HSP length: 53
effective length of query: 239
effective length of database: 157,386,935
effective search space: 37615477465
effective search space used: 37615477465
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)