BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1427 (rps6E) DE:SSU ribosomal protein S6E (rps6E)
(125 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75055 ssu ribosomal protein s6e (rps6e) PAB1427 - Pyrococc... 254 2e-67
sp|O58349|RS6E_PYRHO 30S RIBOSOMAL PROTEIN S6E >gi|7440398|pir||... 235 2e-61
sp|P54067|RS6E_METJA 30S RIBOSOMAL PROTEIN S6E >gi|2129273|pir||... 134 3e-31
gi|11498122 SSU ribosomal protein S6E (rps6E) [Archaeoglobus ful... 118 3e-26
sp|O26360|RS6E_METTH 30S RIBOSOMAL PROTEIN S6E >gi|7440400|pir||... 98 3e-20
gb|AAK40739.1| SSU ribosomal protein S6E (rps6E) [Sulfolobus sol... 92 2e-18
gb|AAG20576.1| (AE005129) 30S ribosomal protein S6E; Rps6e [Halo... 90 9e-18
sp|Q9Y9B6|RS6E_AERPE 30S RIBOSOMAL PROTEIN S6E >gi|7521387|pir||... 72 2e-12
emb|CAC11468.1| (AL445063) 30S ribosomal protein S6 related prot... 72 2e-12
sp|P41798|RS6_KLUMA 40S RIBOSOMAL PROTEIN S6 (S10) >gi|320168|pi... 70 8e-12
gb|AAB88298.1| (AF034217) ribosomal protein S6 [Arabidopsis thal... 70 1e-11
pir||T05100 ribosomal protein S6, cytosolic - Arabidopsis thalia... 70 1e-11
emb|CAB89081.1| (AJ277533) S6 ribosomal protein [Asparagus offic... 69 1e-11
sp|P51430|RS6_ARATH 40S RIBOSOMAL PROTEIN S6 >gi|2224751|emb|CAA... 68 3e-11
pir||T50003 40S ribsomal protein S6 - Arabidopsis thaliana >gi|7... 68 3e-11
sp|P05752|RS6_SCHPO 40S RIBOSOMAL PROTEIN S6 >gi|70934|pir||R3ZP... 67 7e-11
pir||JE0265 S6 ribosomal protein - Leishmania infantum 67 7e-11
emb|CAB86706.1| (AL163505) probable 40S ribosomal protein S6 [Le... 67 7e-11
gi|6319658 40S ribosomal gene product S6B (S10B) (rp9) (YS4); Rp... 67 9e-11
>pir||F75055 ssu ribosomal protein s6e (rps6e) PAB1427 - Pyrococcus abyssi
(strain Orsay) >gi|5458852|emb|CAB50339.1| (AJ248287)
SSU ribosomal protein S6E (rps6E) [Pyrococcus abyssi]
Length = 125
Score = 254 bits (643), Expect = 2e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK
Sbjct: 1 MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
Query: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
Sbjct: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
Query: 121 VKLVY 125
VKLVY
Sbjct: 121 VKLVY 125
>sp|O58349|RS6E_PYRHO 30S RIBOSOMAL PROTEIN S6E >gi|7440398|pir||F71105 probable
ribosomal protein S6E - Pyrococcus horikoshii
>gi|3257021|dbj|BAA29704.1| (AP000003) 125aa long
hypothetical 30S ribosomal protein S6E [Pyrococcus
horikoshii]
Length = 125
Score = 235 bits (593), Expect = 2e-61
Identities = 114/125 (91%), Positives = 120/125 (95%)
Query: 1 MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
M TFKLVISDPK+GIAKQIEI+G AEKLIGK+IGDQIPVKELG++L LFGK+FPEDVK
Sbjct: 1 MTTFKLVISDPKSGIAKQIEISGANAEKLIGKKIGDQIPVKELGLDLKALFGKDFPEDVK 60
Query: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
Sbjct: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
Query: 121 VKLVY 125
VKLVY
Sbjct: 121 VKLVY 125
>sp|P54067|RS6E_METJA 30S RIBOSOMAL PROTEIN S6E >gi|2129273|pir||C64457 ribosomal protein
S6.eR - Methanococcus jannaschii
>gi|1591894|gb|AAB99263.1| (U67566) SSU ribosomal
protein S6E [Methanococcus jannaschii]
Length = 131
Score = 134 bits (335), Expect = 3e-31
Identities = 69/124 (55%), Positives = 87/124 (69%), Gaps = 14/124 (11%)
Query: 1 MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
M T K V++DPKTG QIE + L+GK+IG+ K +G+ E K
Sbjct: 1 MPTAKFVVADPKTGRCYQIEA---DNTPLVGKKIGEVFDGKIIGL-----------EGYK 46
Query: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
++IRGGTD GFPMRPDIHG R+VR+LLS PGF+PK KGERR+KTVRGNTI+P+IVQ+N
Sbjct: 47 LQIRGGTDSSGFPMRPDIHGSRKVRVLLSAPPGFKPKRKGERRRKTVRGNTIAPDIVQIN 106
Query: 121 VKLV 124
VK+V
Sbjct: 107 VKVV 110
>gi|11498122 SSU ribosomal protein S6E (rps6E) [Archaeoglobus fulgidus]
>gi|6226107|sp|O29739|RS6E_ARCFU 30S RIBOSOMAL PROTEIN
S6E >gi|7440399|pir||G69313 SSU ribosomal protein S6E
(rps6E) homolog - Archaeoglobus fulgidus
>gi|2650106|gb|AAB90719.1| (AE001068) SSU ribosomal
protein S6E (rps6E) [Archaeoglobus fulgidus]
Length = 129
Score = 118 bits (292), Expect = 3e-26
Identities = 62/121 (51%), Positives = 81/121 (66%), Gaps = 10/121 (8%)
Query: 4 FKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
F++VISDPKTG A Q + G A +LIGK+IGD I + + P D +++I
Sbjct: 3 FRVVISDPKTGRAYQKVVEGANANRLIGKQIGDVISGTIV----------DLPPDYELKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKL 123
GGTD+DGFPMRPD+ G R R+LLS G GFRPKEKG R++K VRG IS +I+Q+N +
Sbjct: 53 TGGTDRDGFPMRPDLPGTARRRLLLSGGVGFRPKEKGLRKRKGVRGRVISKDILQINTVV 112
Query: 124 V 124
V
Sbjct: 113 V 113
>sp|O26360|RS6E_METTH 30S RIBOSOMAL PROTEIN S6E >gi|7440400|pir||G69132 ribosomal protein
S6 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621310|gb|AAB84766.1| (AE000812) ribosomal
protein S6 [Methanobacterium thermoautotrophicum]
Length = 126
Score = 98.3 bits (241), Expect = 3e-20
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 13/121 (10%)
Query: 4 FKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
FK+VISD + + Q+E+ E+ LIG IGD+ +G++ K++I
Sbjct: 3 FKVVISDKEKSV--QMEVDPSESRGLIGLTIGDEFDGSIIGLS-----------GYKLKI 49
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKL 123
GG+DK+GFPM+ + G RR+R L+S G G++P+ GERR+KT RGNTIS +IVQ+N +
Sbjct: 50 TGGSDKNGFPMKKTVPGARRIRSLVSGGVGYKPRRDGERRRKTFRGNTISDDIVQINTVV 109
Query: 124 V 124
+
Sbjct: 110 I 110
>gb|AAK40739.1| SSU ribosomal protein S6E (rps6E) [Sulfolobus solfataricus]
Length = 214
Score = 92.1 bits (225), Expect = 2e-18
Identities = 51/107 (47%), Positives = 66/107 (61%), Gaps = 11/107 (10%)
Query: 18 QIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEIRGGTDKDGFPMRPD 77
QI + +A L+G +IGD N+L G VK++I GG+D GFPMR D
Sbjct: 118 QISVDQNKATNLVGLKIGDVFEA-------NQLIGLP----VKLKITGGSDNSGFPMRFD 166
Query: 78 IHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLV 124
+ G + +ILLS PGF P E GERR+KT+RGNTIS EIVQ+N +V
Sbjct: 167 VIGAAKRKILLSGPPGFYPNENGERRRKTIRGNTISQEIVQINTIIV 213
>gb|AAG20576.1| (AE005129) 30S ribosomal protein S6E; Rps6e [Halobacterium sp.
NRC-1]
Length = 131
Score = 90.1 bits (220), Expect = 9e-18
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 1 MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
MATF++ ++DP++G Q E+ G +A + IG+ IG + +G+ +
Sbjct: 1 MATFQVAVADPESGRTYQFEVDGQDANRFIGREIGAAVDGGAVGL-----------DGYT 49
Query: 61 MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
+EI GG+D G PMR D+ G + +LL G GF P E GER++ TVRG +S + Q+N
Sbjct: 50 VEITGGSDDAGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRVTVRGKEVSEAVAQLN 109
Query: 121 VKL 123
V +
Sbjct: 110 VAI 112
>sp|Q9Y9B6|RS6E_AERPE 30S RIBOSOMAL PROTEIN S6E >gi|7521387|pir||H72465 probable
ribosomal protein S6 APE2371 - Aeropyrum pernix (strain
K1) >gi|5106073|dbj|BAA81384.1| (AP000064) 245aa long
hypothetical 30S ribosomal protein S6 [Aeropyrum pernix]
Length = 245
Score = 72.2 bits (174), Expect = 2e-12
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 34 IGDQIPVKELGINLNELF--GKEFPEDVKMEIRGGTDKDGFPMRPDIHGPRRVRILLSKG 91
+ D + VK G+ + ++F G +K +IRGGTD G PM P + G R ++LL+
Sbjct: 139 VPDDVHVKLAGLEIGDVFDGGLIGMPGLKFKIRGGTDATGIPMHPGVPGSGRYKVLLAGP 198
Query: 92 PGFRPKEKGERRKKTVRGNTI 112
PGF P+E+GERR+K+VRG I
Sbjct: 199 PGFHPRERGERRRKSVRGRMI 219
>emb|CAC11468.1| (AL445063) 30S ribosomal protein S6 related protein [Thermoplasma
acidophilum]
Length = 124
Score = 72.2 bits (174), Expect = 2e-12
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Query: 7 VISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEIRGG 66
+I+DPKTG + EI L+G++IGD+I G+ +L G K+ + GG
Sbjct: 3 IIADPKTGKTYKKEIPAERMGSLVGRKIGDEID----GVFF-DLVG------YKLVVTGG 51
Query: 67 TDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLV 124
+ DGFPMR D+ + +IL+S G+R K G R++ TVRG+ I +I Q+N+K+V
Sbjct: 52 SSIDGFPMRSDLQTQGKKQILVSYKKGYRGK-NGIRKRITVRGSIIGSDISQINLKIV 108
>sp|P41798|RS6_KLUMA 40S RIBOSOMAL PROTEIN S6 (S10) >gi|320168|pir||S30001 ribosomal
protein S6.e - yeast (Kluyveromyces marxianus)
>gi|263479|gb|AAB24898.1| (S53430) S10=ribosomal protein
[Kluyveromyces marxianus, Peptide, 235 aa]
Length = 235
Score = 70.2 bits (169), Expect = 8e-12
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
KL IS P G K +EI ++ KRIG ++ E G EF V +I
Sbjct: 2 KLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVD--------GEAVGDEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKGPG-FRPKEKGERRKKTVRGNTISPEIVQVNVK 122
GG DK GFPM+ + P RV++L++KG +RP+ GER++K+VRG + P++ + +
Sbjct: 53 AGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCYRPRRNGERKRKSVRGAIVGPDLAVLALV 112
Query: 123 LV 124
+V
Sbjct: 113 IV 114
>gb|AAB88298.1| (AF034217) ribosomal protein S6 [Arabidopsis thaliana]
Length = 249
Score = 69.9 bits (168), Expect = 1e-11
Identities = 45/124 (36%), Positives = 71/124 (56%), Gaps = 13/124 (10%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
K +++P TG K++EI + + KRI ++ + G+EF V +I
Sbjct: 2 KFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
+GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N
Sbjct: 53 KGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112
Query: 121 VKLV 124
+ +V
Sbjct: 113 LVIV 116
>pir||T05100 ribosomal protein S6, cytosolic - Arabidopsis thaliana
>gi|3281858|emb|CAA19753.1| (AL031004) ribosomal protein
S6 - like [Arabidopsis thaliana]
>gi|7270073|emb|CAB79888.1| (AL161579) ribosomal protein
S6-like [Arabidopsis thaliana]
Length = 250
Score = 69.9 bits (168), Expect = 1e-11
Identities = 45/124 (36%), Positives = 71/124 (56%), Gaps = 13/124 (10%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
K +++P TG K++EI + + KRI ++ + G+EF V +I
Sbjct: 2 KFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
+GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N
Sbjct: 53 KGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112
Query: 121 VKLV 124
+ +V
Sbjct: 113 LVIV 116
>emb|CAB89081.1| (AJ277533) S6 ribosomal protein [Asparagus officinalis]
Length = 251
Score = 69.5 bits (167), Expect = 1e-11
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 13/124 (10%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
K I++P TG K++EI + + KRI ++ + G+EF V +I
Sbjct: 2 KFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N
Sbjct: 53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 112
Query: 121 VKLV 124
+ +V
Sbjct: 113 LVIV 116
>sp|P51430|RS6_ARATH 40S RIBOSOMAL PROTEIN S6 >gi|2224751|emb|CAA74381.1| (Y14052)
ribosomal protein S6 [Arabidopsis thaliana]
Length = 249
Score = 68.3 bits (164), Expect = 3e-11
Identities = 44/124 (35%), Positives = 70/124 (55%), Gaps = 13/124 (10%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEK-LIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
K +++P TG K++EI + + KR+ ++ + G+EF V +I
Sbjct: 2 KFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVS--------GDALGEEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N
Sbjct: 53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112
Query: 121 VKLV 124
+ +V
Sbjct: 113 LVIV 116
>pir||T50003 40S ribsomal protein S6 - Arabidopsis thaliana
>gi|7671467|emb|CAB89407.1| (AL353995) 40S ribsomal
protein S6 [Arabidopsis thaliana]
Length = 249
Score = 68.3 bits (164), Expect = 3e-11
Identities = 44/124 (35%), Positives = 70/124 (55%), Gaps = 13/124 (10%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEK-LIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
K +++P TG K++EI + + KR+ ++ + G+EF V +I
Sbjct: 2 KFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVS--------GDALGEEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
GG DK GFPM+ + P RVR+LL +G P FR + GERR+K+VRG +SP++ +N
Sbjct: 53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112
Query: 121 VKLV 124
+ +V
Sbjct: 113 LVIV 116
>sp|P05752|RS6_SCHPO 40S RIBOSOMAL PROTEIN S6 >gi|70934|pir||R3ZP6E 40s ribosomal
protein S6.e, cytosolic - fission yeast
(Schizosaccharomyces pombe) >gi|173474|gb|AAA35338.1|
(M36382) ribosomal protein S6 (rps6) precursor
[Schizosaccharomyces pombe] >gi|1008992|emb|CAA91100.1|
(Z54308) 40s ribosomal protein s6 [Schizosaccharomyces
pombe]
Length = 239
Score = 67.1 bits (161), Expect = 7e-11
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKL-IGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
KL IS P G K IEI ++ + KR+G ++P + G EF V +I
Sbjct: 2 KLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVP--------GDSVGPEFAGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFRPKEKGERRKKTVRGNTISPEIVQVNVK 122
GG DK GFPM + P RVR+LL G P +RP+ GER++K+VRG + ++ + +
Sbjct: 53 TGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALA 112
Query: 123 LV 124
++
Sbjct: 113 II 114
>pir||JE0265 S6 ribosomal protein - Leishmania infantum
Length = 249
Score = 67.1 bits (161), Expect = 7e-11
Identities = 45/124 (36%), Positives = 67/124 (53%), Gaps = 14/124 (11%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEK--LIGKRIGDQIPVKELGINLNELFGKEFPEDVKME 62
KL I+ P+ G KQ EI+ + L R+G+++ +FG EF +
Sbjct: 2 KLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVD--------GAIFGSEFKGYI-FR 52
Query: 63 IRGGTDKDGFPMRPDIHGPRRVRILLSKGP-GFRPKE--KGERRKKTVRGNTISPEIVQV 119
+RGG+DKDGFPM P + RV +L+ +G GF +GERR+K VRG ++ +I V
Sbjct: 53 LRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALV 112
Query: 120 NVKL 123
NV +
Sbjct: 113 NVTI 116
>emb|CAB86706.1| (AL163505) probable 40S ribosomal protein S6 [Leishmania major]
>gi|9795573|gb|AAF98395.1|AC016161_4 (AC016161)
Ribosomal protein S6 [Leishmania major]
Length = 249
Score = 67.1 bits (161), Expect = 7e-11
Identities = 45/124 (36%), Positives = 67/124 (53%), Gaps = 14/124 (11%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEK--LIGKRIGDQIPVKELGINLNELFGKEFPEDVKME 62
KL I+ P+ G KQ EI+ + L R+G+++ +FG EF +
Sbjct: 2 KLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVD--------GAIFGSEFKGYI-FR 52
Query: 63 IRGGTDKDGFPMRPDIHGPRRVRILLSKGP-GFRPKE--KGERRKKTVRGNTISPEIVQV 119
+RGG+DKDGFPM P + RV +L+ +G GF +GERR+K VRG ++ +I V
Sbjct: 53 LRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALV 112
Query: 120 NVKL 123
NV +
Sbjct: 113 NVTI 116
>gi|6319658 40S ribosomal gene product S6B (S10B) (rp9) (YS4); Rps6bp
[Saccharomyces cerevisiae] >gi|6325167|ref|NP_015235.1|
Ribosomal protein S6A (S10A) (rp9) (YS4); Rps6ap
[Saccharomyces cerevisiae]
>gi|133979|sp|P02365|RS6_YEAST 40S RIBOSOMAL PROTEIN S6
(S10) (YS4) (RP9) >gi|70935|pir||R3BY10 ribosomal
protein S6.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|4402|emb|CAA26525.1| (X02746) ribosomal
protein S10-2 [Saccharomyces pastorianus]
>gi|536534|emb|CAA85142.1| (Z36050) ORF YBR181c
[Saccharomyces cerevisiae]
Length = 236
Score = 66.7 bits (160), Expect = 9e-11
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
Query: 5 KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
KL IS P G K EI ++ KRIG ++ E G EF V +I
Sbjct: 2 KLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVD--------GEAVGDEFKGYV-FKI 52
Query: 64 RGGTDKDGFPMRPDIHGPRRVRILLSKGPG-FRPKEKGERRKKTVRGNTISPEIVQVNVK 122
GG DK GFPM+ + P R+++LL+K +RP+ GER++K+VRG + P++ + +
Sbjct: 53 SGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALV 112
Query: 123 LV 124
+V
Sbjct: 113 IV 114
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.143 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50061402
Number of Sequences: 2977
Number of extensions: 2198651
Number of successful extensions: 4180
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4155
Number of HSP's gapped (non-prelim): 20
length of query: 125
length of database: 189,106,746
effective HSP length: 52
effective length of query: 73
effective length of database: 157,985,422
effective search space: 11532935806
effective search space used: 11532935806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)