BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1427 (rps6E) DE:SSU ribosomal protein S6E (rps6E)
         (125 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75055 ssu ribosomal protein s6e (rps6e) PAB1427 - Pyrococc...   254  2e-67
sp|O58349|RS6E_PYRHO 30S RIBOSOMAL PROTEIN S6E >gi|7440398|pir||...   235  2e-61
sp|P54067|RS6E_METJA 30S RIBOSOMAL PROTEIN S6E >gi|2129273|pir||...   134  3e-31
gi|11498122 SSU ribosomal protein S6E (rps6E) [Archaeoglobus ful...   118  3e-26
sp|O26360|RS6E_METTH 30S RIBOSOMAL PROTEIN S6E >gi|7440400|pir||...    98  3e-20
gb|AAK40739.1| SSU ribosomal protein S6E (rps6E) [Sulfolobus sol...    92  2e-18
gb|AAG20576.1| (AE005129) 30S ribosomal protein S6E; Rps6e [Halo...    90  9e-18
sp|Q9Y9B6|RS6E_AERPE 30S RIBOSOMAL PROTEIN S6E >gi|7521387|pir||...    72  2e-12
emb|CAC11468.1| (AL445063) 30S ribosomal protein S6 related prot...    72  2e-12
sp|P41798|RS6_KLUMA 40S RIBOSOMAL PROTEIN S6 (S10) >gi|320168|pi...    70  8e-12
gb|AAB88298.1| (AF034217) ribosomal protein S6 [Arabidopsis thal...    70  1e-11
pir||T05100 ribosomal protein S6, cytosolic - Arabidopsis thalia...    70  1e-11
emb|CAB89081.1| (AJ277533) S6 ribosomal protein [Asparagus offic...    69  1e-11
sp|P51430|RS6_ARATH 40S RIBOSOMAL PROTEIN S6 >gi|2224751|emb|CAA...    68  3e-11
pir||T50003 40S ribsomal protein S6 - Arabidopsis thaliana >gi|7...    68  3e-11
sp|P05752|RS6_SCHPO 40S RIBOSOMAL PROTEIN S6 >gi|70934|pir||R3ZP...    67  7e-11
pir||JE0265 S6 ribosomal protein - Leishmania infantum                 67  7e-11
emb|CAB86706.1| (AL163505) probable 40S ribosomal protein S6 [Le...    67  7e-11
gi|6319658 40S ribosomal gene product S6B (S10B) (rp9) (YS4); Rp...    67  9e-11

>pir||F75055 ssu ribosomal protein s6e (rps6e) PAB1427 - Pyrococcus abyssi
           (strain Orsay) >gi|5458852|emb|CAB50339.1| (AJ248287)
           SSU ribosomal protein S6E (rps6E) [Pyrococcus abyssi]
           Length = 125
           
 Score =  254 bits (643), Expect = 2e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
           MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK
Sbjct: 1   MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60

Query: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
           MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
Sbjct: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120

Query: 121 VKLVY 125
           VKLVY
Sbjct: 121 VKLVY 125


>sp|O58349|RS6E_PYRHO 30S RIBOSOMAL PROTEIN S6E >gi|7440398|pir||F71105 probable
           ribosomal protein S6E - Pyrococcus horikoshii
           >gi|3257021|dbj|BAA29704.1| (AP000003) 125aa long
           hypothetical 30S ribosomal protein S6E [Pyrococcus
           horikoshii]
           Length = 125
           
 Score =  235 bits (593), Expect = 2e-61
 Identities = 114/125 (91%), Positives = 120/125 (95%)

Query: 1   MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
           M TFKLVISDPK+GIAKQIEI+G  AEKLIGK+IGDQIPVKELG++L  LFGK+FPEDVK
Sbjct: 1   MTTFKLVISDPKSGIAKQIEISGANAEKLIGKKIGDQIPVKELGLDLKALFGKDFPEDVK 60

Query: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
           MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN
Sbjct: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120

Query: 121 VKLVY 125
           VKLVY
Sbjct: 121 VKLVY 125


>sp|P54067|RS6E_METJA 30S RIBOSOMAL PROTEIN S6E >gi|2129273|pir||C64457 ribosomal protein
           S6.eR - Methanococcus jannaschii
           >gi|1591894|gb|AAB99263.1| (U67566) SSU ribosomal
           protein S6E [Methanococcus jannaschii]
           Length = 131
           
 Score =  134 bits (335), Expect = 3e-31
 Identities = 69/124 (55%), Positives = 87/124 (69%), Gaps = 14/124 (11%)

Query: 1   MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
           M T K V++DPKTG   QIE    +   L+GK+IG+    K +G+           E  K
Sbjct: 1   MPTAKFVVADPKTGRCYQIEA---DNTPLVGKKIGEVFDGKIIGL-----------EGYK 46

Query: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
           ++IRGGTD  GFPMRPDIHG R+VR+LLS  PGF+PK KGERR+KTVRGNTI+P+IVQ+N
Sbjct: 47  LQIRGGTDSSGFPMRPDIHGSRKVRVLLSAPPGFKPKRKGERRRKTVRGNTIAPDIVQIN 106

Query: 121 VKLV 124
           VK+V
Sbjct: 107 VKVV 110


>gi|11498122 SSU ribosomal protein S6E (rps6E) [Archaeoglobus fulgidus]
           >gi|6226107|sp|O29739|RS6E_ARCFU 30S RIBOSOMAL PROTEIN
           S6E >gi|7440399|pir||G69313 SSU ribosomal protein S6E
           (rps6E) homolog - Archaeoglobus fulgidus
           >gi|2650106|gb|AAB90719.1| (AE001068) SSU ribosomal
           protein S6E (rps6E) [Archaeoglobus fulgidus]
           Length = 129
           
 Score =  118 bits (292), Expect = 3e-26
 Identities = 62/121 (51%), Positives = 81/121 (66%), Gaps = 10/121 (8%)

Query: 4   FKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           F++VISDPKTG A Q  + G  A +LIGK+IGD I    +          + P D +++I
Sbjct: 3   FRVVISDPKTGRAYQKVVEGANANRLIGKQIGDVISGTIV----------DLPPDYELKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKL 123
            GGTD+DGFPMRPD+ G  R R+LLS G GFRPKEKG R++K VRG  IS +I+Q+N  +
Sbjct: 53  TGGTDRDGFPMRPDLPGTARRRLLLSGGVGFRPKEKGLRKRKGVRGRVISKDILQINTVV 112

Query: 124 V 124
           V
Sbjct: 113 V 113


>sp|O26360|RS6E_METTH 30S RIBOSOMAL PROTEIN S6E >gi|7440400|pir||G69132 ribosomal protein
           S6 - Methanobacterium thermoautotrophicum  (strain Delta
           H) >gi|2621310|gb|AAB84766.1| (AE000812) ribosomal
           protein S6 [Methanobacterium thermoautotrophicum]
           Length = 126
           
 Score = 98.3 bits (241), Expect = 3e-20
 Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 13/121 (10%)

Query: 4   FKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           FK+VISD +  +  Q+E+   E+  LIG  IGD+     +G++             K++I
Sbjct: 3   FKVVISDKEKSV--QMEVDPSESRGLIGLTIGDEFDGSIIGLS-----------GYKLKI 49

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKL 123
            GG+DK+GFPM+  + G RR+R L+S G G++P+  GERR+KT RGNTIS +IVQ+N  +
Sbjct: 50  TGGSDKNGFPMKKTVPGARRIRSLVSGGVGYKPRRDGERRRKTFRGNTISDDIVQINTVV 109

Query: 124 V 124
           +
Sbjct: 110 I 110


>gb|AAK40739.1| SSU ribosomal protein S6E (rps6E) [Sulfolobus solfataricus]
           Length = 214
           
 Score = 92.1 bits (225), Expect = 2e-18
 Identities = 51/107 (47%), Positives = 66/107 (61%), Gaps = 11/107 (10%)

Query: 18  QIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEIRGGTDKDGFPMRPD 77
           QI +   +A  L+G +IGD           N+L G      VK++I GG+D  GFPMR D
Sbjct: 118 QISVDQNKATNLVGLKIGDVFEA-------NQLIGLP----VKLKITGGSDNSGFPMRFD 166

Query: 78  IHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLV 124
           + G  + +ILLS  PGF P E GERR+KT+RGNTIS EIVQ+N  +V
Sbjct: 167 VIGAAKRKILLSGPPGFYPNENGERRRKTIRGNTISQEIVQINTIIV 213


>gb|AAG20576.1| (AE005129) 30S ribosomal protein S6E; Rps6e [Halobacterium sp.
           NRC-1]
           Length = 131
           
 Score = 90.1 bits (220), Expect = 9e-18
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 11/123 (8%)

Query: 1   MATFKLVISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVK 60
           MATF++ ++DP++G   Q E+ G +A + IG+ IG  +    +G+           +   
Sbjct: 1   MATFQVAVADPESGRTYQFEVDGQDANRFIGREIGAAVDGGAVGL-----------DGYT 49

Query: 61  MEIRGGTDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVN 120
           +EI GG+D  G PMR D+ G   + +LL  G GF P E GER++ TVRG  +S  + Q+N
Sbjct: 50  VEITGGSDDAGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRVTVRGKEVSEAVAQLN 109

Query: 121 VKL 123
           V +
Sbjct: 110 VAI 112


>sp|Q9Y9B6|RS6E_AERPE 30S RIBOSOMAL PROTEIN S6E >gi|7521387|pir||H72465 probable
           ribosomal protein S6 APE2371 - Aeropyrum pernix  (strain
           K1) >gi|5106073|dbj|BAA81384.1| (AP000064) 245aa long
           hypothetical 30S ribosomal protein S6 [Aeropyrum pernix]
           Length = 245
           
 Score = 72.2 bits (174), Expect = 2e-12
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 34  IGDQIPVKELGINLNELF--GKEFPEDVKMEIRGGTDKDGFPMRPDIHGPRRVRILLSKG 91
           + D + VK  G+ + ++F  G      +K +IRGGTD  G PM P + G  R ++LL+  
Sbjct: 139 VPDDVHVKLAGLEIGDVFDGGLIGMPGLKFKIRGGTDATGIPMHPGVPGSGRYKVLLAGP 198

Query: 92  PGFRPKEKGERRKKTVRGNTI 112
           PGF P+E+GERR+K+VRG  I
Sbjct: 199 PGFHPRERGERRRKSVRGRMI 219


>emb|CAC11468.1| (AL445063) 30S ribosomal protein S6 related protein [Thermoplasma
           acidophilum]
           Length = 124
           
 Score = 72.2 bits (174), Expect = 2e-12
 Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 12/118 (10%)

Query: 7   VISDPKTGIAKQIEITGPEAEKLIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEIRGG 66
           +I+DPKTG   + EI       L+G++IGD+I     G+   +L G       K+ + GG
Sbjct: 3   IIADPKTGKTYKKEIPAERMGSLVGRKIGDEID----GVFF-DLVG------YKLVVTGG 51

Query: 67  TDKDGFPMRPDIHGPRRVRILLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLV 124
           +  DGFPMR D+    + +IL+S   G+R K  G R++ TVRG+ I  +I Q+N+K+V
Sbjct: 52  SSIDGFPMRSDLQTQGKKQILVSYKKGYRGK-NGIRKRITVRGSIIGSDISQINLKIV 108


>sp|P41798|RS6_KLUMA 40S RIBOSOMAL PROTEIN S6 (S10) >gi|320168|pir||S30001 ribosomal
           protein S6.e - yeast (Kluyveromyces marxianus)
           >gi|263479|gb|AAB24898.1| (S53430) S10=ribosomal protein
           [Kluyveromyces marxianus, Peptide, 235 aa]
           Length = 235
           
 Score = 70.2 bits (169), Expect = 8e-12
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 11/122 (9%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           KL IS P  G  K +EI      ++   KRIG ++          E  G EF   V  +I
Sbjct: 2   KLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVD--------GEAVGDEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKGPG-FRPKEKGERRKKTVRGNTISPEIVQVNVK 122
            GG DK GFPM+  +  P RV++L++KG   +RP+  GER++K+VRG  + P++  + + 
Sbjct: 53  AGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCYRPRRNGERKRKSVRGAIVGPDLAVLALV 112

Query: 123 LV 124
           +V
Sbjct: 113 IV 114


>gb|AAB88298.1| (AF034217) ribosomal protein S6 [Arabidopsis thaliana]
           Length = 249
           
 Score = 69.9 bits (168), Expect = 1e-11
 Identities = 45/124 (36%), Positives = 71/124 (56%), Gaps = 13/124 (10%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           K  +++P TG  K++EI   +  +    KRI  ++          +  G+EF   V  +I
Sbjct: 2   KFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
           +GG DK GFPM+  +  P RVR+LL +G P FR   +  GERR+K+VRG  +SP++  +N
Sbjct: 53  KGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query: 121 VKLV 124
           + +V
Sbjct: 113 LVIV 116


>pir||T05100 ribosomal protein S6, cytosolic - Arabidopsis thaliana
           >gi|3281858|emb|CAA19753.1| (AL031004) ribosomal protein
           S6 - like [Arabidopsis thaliana]
           >gi|7270073|emb|CAB79888.1| (AL161579) ribosomal protein
           S6-like [Arabidopsis thaliana]
           Length = 250
           
 Score = 69.9 bits (168), Expect = 1e-11
 Identities = 45/124 (36%), Positives = 71/124 (56%), Gaps = 13/124 (10%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           K  +++P TG  K++EI   +  +    KRI  ++          +  G+EF   V  +I
Sbjct: 2   KFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
           +GG DK GFPM+  +  P RVR+LL +G P FR   +  GERR+K+VRG  +SP++  +N
Sbjct: 53  KGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query: 121 VKLV 124
           + +V
Sbjct: 113 LVIV 116


>emb|CAB89081.1| (AJ277533) S6 ribosomal protein [Asparagus officinalis]
           Length = 251
           
 Score = 69.5 bits (167), Expect = 1e-11
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 13/124 (10%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           K  I++P TG  K++EI   +  +    KRI  ++          +  G+EF   V  +I
Sbjct: 2   KFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVS--------GDALGEEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
            GG DK GFPM+  +  P RVR+LL +G P FR   +  GERR+K+VRG  +SP++  +N
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 112

Query: 121 VKLV 124
           + +V
Sbjct: 113 LVIV 116


>sp|P51430|RS6_ARATH 40S RIBOSOMAL PROTEIN S6 >gi|2224751|emb|CAA74381.1| (Y14052)
           ribosomal protein S6 [Arabidopsis thaliana]
           Length = 249
           
 Score = 68.3 bits (164), Expect = 3e-11
 Identities = 44/124 (35%), Positives = 70/124 (55%), Gaps = 13/124 (10%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEK-LIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           K  +++P TG  K++EI   +  +    KR+  ++          +  G+EF   V  +I
Sbjct: 2   KFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVS--------GDALGEEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
            GG DK GFPM+  +  P RVR+LL +G P FR   +  GERR+K+VRG  +SP++  +N
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query: 121 VKLV 124
           + +V
Sbjct: 113 LVIV 116


>pir||T50003 40S ribsomal protein S6 - Arabidopsis thaliana
           >gi|7671467|emb|CAB89407.1| (AL353995) 40S ribsomal
           protein S6 [Arabidopsis thaliana]
           Length = 249
           
 Score = 68.3 bits (164), Expect = 3e-11
 Identities = 44/124 (35%), Positives = 70/124 (55%), Gaps = 13/124 (10%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEK-LIGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           K  +++P TG  K++EI   +  +    KR+  ++          +  G+EF   V  +I
Sbjct: 2   KFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVS--------GDALGEEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVN 120
            GG DK GFPM+  +  P RVR+LL +G P FR   +  GERR+K+VRG  +SP++  +N
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query: 121 VKLV 124
           + +V
Sbjct: 113 LVIV 116


>sp|P05752|RS6_SCHPO 40S RIBOSOMAL PROTEIN S6 >gi|70934|pir||R3ZP6E 40s ribosomal
           protein S6.e, cytosolic - fission yeast
           (Schizosaccharomyces pombe) >gi|173474|gb|AAA35338.1|
           (M36382) ribosomal protein S6 (rps6) precursor
           [Schizosaccharomyces pombe] >gi|1008992|emb|CAA91100.1|
           (Z54308) 40s ribosomal protein s6 [Schizosaccharomyces
           pombe]
           Length = 239
           
 Score = 67.1 bits (161), Expect = 7e-11
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 11/122 (9%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKL-IGKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           KL IS P  G  K IEI      ++ + KR+G ++P         +  G EF   V  +I
Sbjct: 2   KLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVP--------GDSVGPEFAGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKG-PGFRPKEKGERRKKTVRGNTISPEIVQVNVK 122
            GG DK GFPM   +  P RVR+LL  G P +RP+  GER++K+VRG  +  ++  + + 
Sbjct: 53  TGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALA 112

Query: 123 LV 124
           ++
Sbjct: 113 II 114


>pir||JE0265 S6 ribosomal protein - Leishmania infantum
           Length = 249
           
 Score = 67.1 bits (161), Expect = 7e-11
 Identities = 45/124 (36%), Positives = 67/124 (53%), Gaps = 14/124 (11%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEK--LIGKRIGDQIPVKELGINLNELFGKEFPEDVKME 62
           KL I+ P+ G  KQ EI+     +  L   R+G+++           +FG EF   +   
Sbjct: 2   KLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVD--------GAIFGSEFKGYI-FR 52

Query: 63  IRGGTDKDGFPMRPDIHGPRRVRILLSKGP-GFRPKE--KGERRKKTVRGNTISPEIVQV 119
           +RGG+DKDGFPM P +    RV +L+ +G  GF      +GERR+K VRG  ++ +I  V
Sbjct: 53  LRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALV 112

Query: 120 NVKL 123
           NV +
Sbjct: 113 NVTI 116


>emb|CAB86706.1| (AL163505) probable 40S ribosomal protein S6 [Leishmania major]
           >gi|9795573|gb|AAF98395.1|AC016161_4 (AC016161)
           Ribosomal protein S6 [Leishmania major]
           Length = 249
           
 Score = 67.1 bits (161), Expect = 7e-11
 Identities = 45/124 (36%), Positives = 67/124 (53%), Gaps = 14/124 (11%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEK--LIGKRIGDQIPVKELGINLNELFGKEFPEDVKME 62
           KL I+ P+ G  KQ EI+     +  L   R+G+++           +FG EF   +   
Sbjct: 2   KLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVD--------GAIFGSEFKGYI-FR 52

Query: 63  IRGGTDKDGFPMRPDIHGPRRVRILLSKGP-GFRPKE--KGERRKKTVRGNTISPEIVQV 119
           +RGG+DKDGFPM P +    RV +L+ +G  GF      +GERR+K VRG  ++ +I  V
Sbjct: 53  LRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALV 112

Query: 120 NVKL 123
           NV +
Sbjct: 113 NVTI 116


>gi|6319658 40S ribosomal gene product S6B (S10B) (rp9) (YS4); Rps6bp
           [Saccharomyces cerevisiae] >gi|6325167|ref|NP_015235.1|
           Ribosomal protein S6A (S10A) (rp9) (YS4); Rps6ap
           [Saccharomyces cerevisiae]
           >gi|133979|sp|P02365|RS6_YEAST 40S RIBOSOMAL PROTEIN S6
           (S10) (YS4) (RP9) >gi|70935|pir||R3BY10 ribosomal
           protein S6.e, cytosolic - yeast (Saccharomyces
           cerevisiae) >gi|4402|emb|CAA26525.1| (X02746) ribosomal
           protein S10-2 [Saccharomyces pastorianus]
           >gi|536534|emb|CAA85142.1| (Z36050) ORF YBR181c
           [Saccharomyces cerevisiae]
           Length = 236
           
 Score = 66.7 bits (160), Expect = 9e-11
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 11/122 (9%)

Query: 5   KLVISDPKTGIAKQIEITGPEAEKLI-GKRIGDQIPVKELGINLNELFGKEFPEDVKMEI 63
           KL IS P  G  K  EI      ++   KRIG ++          E  G EF   V  +I
Sbjct: 2   KLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVD--------GEAVGDEFKGYV-FKI 52

Query: 64  RGGTDKDGFPMRPDIHGPRRVRILLSKGPG-FRPKEKGERRKKTVRGNTISPEIVQVNVK 122
            GG DK GFPM+  +  P R+++LL+K    +RP+  GER++K+VRG  + P++  + + 
Sbjct: 53  SGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALV 112

Query: 123 LV 124
           +V
Sbjct: 113 IV 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.143    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50061402
Number of Sequences: 2977
Number of extensions: 2198651
Number of successful extensions: 4180
Number of sequences better than 1.0e-10: 19
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4155
Number of HSP's gapped (non-prelim): 20
length of query: 125
length of database: 189,106,746
effective HSP length: 52
effective length of query: 73
effective length of database: 157,985,422
effective search space: 11532935806
effective search space used: 11532935806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)