BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1428 (PAB1428) DE:Hypothetical protein
         (253 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75055 hypothetical protein PAB1428 - Pyrococcus abyssi (st...   481  e-135
pir||H71105 hypothetical protein PH0617 - Pyrococcus horikoshii ...   274  6e-73

>pir||E75055 hypothetical protein PAB1428 - Pyrococcus abyssi (strain Orsay)
           >gi|5458851|emb|CAB50338.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 253
           
 Score =  481 bits (1225), Expect = e-135
 Identities = 253/253 (100%), Positives = 253/253 (100%)

Query: 1   MLILIPPYIIAIVSTLLMIAIALTSNDATYILIMALVFAFLDISKYYLLLLIPMFFLLIP 60
           MLILIPPYIIAIVSTLLMIAIALTSNDATYILIMALVFAFLDISKYYLLLLIPMFFLLIP
Sbjct: 1   MLILIPPYIIAIVSTLLMIAIALTSNDATYILIMALVFAFLDISKYYLLLLIPMFFLLIP 60

Query: 61  RPVRELGIVSLGLFMVSPYIRSLLNEEEVLRLFLLELLLFLLISPKPRNVILKGLWLVII 120
           RPVRELGIVSLGLFMVSPYIRSLLNEEEVLRLFLLELLLFLLISPKPRNVILKGLWLVII
Sbjct: 61  RPVRELGIVSLGLFMVSPYIRSLLNEEEVLRLFLLELLLFLLISPKPRNVILKGLWLVII 120

Query: 121 SLGTVVLQILTPVAMLIPVSYLLAIPRSALTYLYIAITSVGIAVLYDYGMISFPNFYLPV 180
           SLGTVVLQILTPVAMLIPVSYLLAIPRSALTYLYIAITSVGIAVLYDYGMISFPNFYLPV
Sbjct: 121 SLGTVVLQILTPVAMLIPVSYLLAIPRSALTYLYIAITSVGIAVLYDYGMISFPNFYLPV 180

Query: 181 FQIYEVSLIPVILILYSIFREKKEILKKKQTLMLFILLLLMTPFIGEHEVEFSFLLSTVS 240
           FQIYEVSLIPVILILYSIFREKKEILKKKQTLMLFILLLLMTPFIGEHEVEFSFLLSTVS
Sbjct: 181 FQIYEVSLIPVILILYSIFREKKEILKKKQTLMLFILLLLMTPFIGEHEVEFSFLLSTVS 240

Query: 241 VRLITSLPHEETL 253
           VRLITSLPHEETL
Sbjct: 241 VRLITSLPHEETL 253


>pir||H71105 hypothetical protein PH0617 - Pyrococcus horikoshii
           >gi|3257023|dbj|BAA29706.1| (AP000003) 265aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 265
           
 Score =  274 bits (694), Expect = 6e-73
 Identities = 138/253 (54%), Positives = 181/253 (70%)

Query: 1   MLILIPPYIIAIVSTLLMIAIALTSNDATYILIMALVFAFLDISKYYLLLLIPMFFLLIP 60
           +++ +PPY+IA++STLLM    +TS + TY+L++ L++  LD++KY LLL+ PM FLL+P
Sbjct: 13  LILQLPPYLIAVISTLLMSLTIMTSPETTYLLVLILIWVLLDLTKYPLLLIAPMVFLLVP 72

Query: 61  RPVRELGIVSLGLFMVSPYIRSLLNEEEVLRLFLLELLLFLLISPKPRNVILKGLWLVII 120
           +  R LGI+  GL + SP IR  L   EVL+LF L L++ LLISP+PRN I K LWL  +
Sbjct: 73  KYARGLGILVFGLLLASPKIRVELTNYEVLKLFSLSLVILLLISPRPRNTIAKILWLATV 132

Query: 121 SLGTVVLQILTPVAMLIPVSYLLAIPRSALTYLYIAITSVGIAVLYDYGMISFPNFYLPV 180
            LG+V L +LTP+A L+ V+Y LA+PR  L YLY   T  G  VLY YG+ SFP    P 
Sbjct: 133 VLGSVTLDVLTPIAPLLVVAYFLALPRDRLAYLYSIFTVTGFWVLYRYGLFSFPTPSPPP 192

Query: 181 FQIYEVSLIPVILILYSIFREKKEILKKKQTLMLFILLLLMTPFIGEHEVEFSFLLSTVS 240
             IYE  LIPV++I YSI +EK E+L+KKQTL++ +L LLMTPFI  +E EF+ LLST S
Sbjct: 193 RWIYEAILIPVLVITYSILKEKGEVLRKKQTLVILLLALLMTPFIRTNEAEFTLLLSTAS 252

Query: 241 VRLITSLPHEETL 253
           VRLI SLPHEETL
Sbjct: 253 VRLIASLPHEETL 265


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.333    0.150    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80903799
Number of Sequences: 2977
Number of extensions: 3107348
Number of successful extensions: 13873
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13870
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 189,106,746
effective HSP length: 52
effective length of query: 201
effective length of database: 157,985,422
effective search space: 31755069822
effective search space used: 31755069822
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)