BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1431 (PAB1431) DE:Hypothetical protein
         (442 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (st...   872  0.0
pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii ...   813  0.0
pir||A75021 succinyl-coa synthetase alpha chain related protein ...   369  e-101
pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii ...   365  e-100
pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (st...   365  e-100
pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii ...   364  1e-99
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid...   346  2e-94
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir...   339  3e-92
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ...   336  3e-91
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st...   335  5e-91
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph...   335  8e-91
pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii ...   331  9e-90
pir||E75149 succinyl-coa synthetase alpha chain related protein ...   326  4e-88
emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Therm...   284  1e-75
gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entam...   279  6e-74
gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfat...   269  5e-71
gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giard...   265  1e-69
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy...   255  6e-67
gi|11499522 conserved hypothetical protein [Archaeoglobus fulgid...   252  7e-66
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid...   249  5e-65
pir||C82443 conserved hypothetical protein VCA0574 [imported] - ...   244  1e-63
gi|11498537 conserved hypothetical protein [Archaeoglobus fulgid...   243  3e-63
gi|11499106 conserved hypothetical protein [Archaeoglobus fulgid...   241  1e-62
gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacte...   221  1e-56
dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in U...   201  1e-50
sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA IN...   201  1e-50
emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas ...   173  5e-42
pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomo...   169  5e-41
pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelic...   136  5e-31
pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas...   107  3e-22

>pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (strain Orsay)
           >gi|5458844|emb|CAB50331.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 442
           
 Score =  872 bits (2228), Expect = 0.0
 Identities = 442/442 (100%), Positives = 442/442 (100%)

Query: 1   MDYFFYPKSVAIFGSFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKR 60
           MDYFFYPKSVAIFGSFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKR
Sbjct: 1   MDYFFYPKSVAIFGSFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKR 60

Query: 61  LEEEVDVSIVVIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIR 120
           LEEEVDVSIVVIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIR
Sbjct: 61  LEEEVDVSIVVIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIR 120

Query: 121 IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG 180
           IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG
Sbjct: 121 IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG 180

Query: 181 NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESG 240
           NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESG
Sbjct: 181 NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESG 240

Query: 241 AKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAVITNSG 300
           AKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAVITNSG
Sbjct: 241 AKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAVITNSG 300

Query: 301 GPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVV 360
           GPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVV
Sbjct: 301 GPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVV 360

Query: 361 CQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELLNAHGIK 420
           CQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELLNAHGIK
Sbjct: 361 CQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELLNAHGIK 420

Query: 421 NFPTPERAAKALYWLSKRKNQG 442
           NFPTPERAAKALYWLSKRKNQG
Sbjct: 421 NFPTPERAAKALYWLSKRKNQG 442


>pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii
           >gi|3257031|dbj|BAA29714.1| (AP000003) 440aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 440
           
 Score =  813 bits (2076), Expect = 0.0
 Identities = 406/440 (92%), Positives = 429/440 (97%)

Query: 1   MDYFFYPKSVAIFGSFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKR 60
           MDYFFYPKSVAIFGSFR+G+IAREILRNIVEGGFEGKIIPVNPKGG VEV+GRRF I+++
Sbjct: 1   MDYFFYPKSVAIFGSFRKGSIAREILRNIVEGGFEGKIIPVNPKGGEVEVSGRRFIIKRK 60

Query: 61  LEEEVDVSIVVIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIR 120
           L+E VDVSI+VIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNV+LEEELI+AAKE+GIR
Sbjct: 61  LDEFVDVSIIVIPAKLVPGLIRELKGLTKGAVVISAGFSEVGNVELEEELIRAAKESGIR 120

Query: 121 IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG 180
           IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG
Sbjct: 121 IIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG 180

Query: 181 NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESG 240
           NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKS+SG
Sbjct: 181 NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSKSG 240

Query: 241 AKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAVITNSG 300
           AKAAQSHTGSLAGSYEIY+A FKQ NAIEVEEMEELFDAAKAFEMY+ AGSRVAVITNSG
Sbjct: 241 AKAAQSHTGSLAGSYEIYQAAFKQANAIEVEEMEELFDAAKAFEMYKEAGSRVAVITNSG 300

Query: 301 GPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVV 360
           GPGVLATDKLEKLGLEIA+LSE+TV KLREFLPPQCST+NPIDLIADADYERY+RTIE+V
Sbjct: 301 GPGVLATDKLEKLGLEIAQLSEDTVKKLREFLPPQCSTKNPIDLIADADYERYKRTIEIV 360

Query: 361 CQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELLNAHGIK 420
           CQDENVDSLLVICVPPIFIPSEEIARAIIEAKC+KPIIVNFM+GELV  GV+LLN H IK
Sbjct: 361 CQDENVDSLLVICVPPIFIPSEEIARAIIEAKCDKPIIVNFMSGELVANGVKLLNDHDIK 420

Query: 421 NFPTPERAAKALYWLSKRKN 440
           NFPTPERAAKALYWLSKRK+
Sbjct: 421 NFPTPERAAKALYWLSKRKS 440


>pir||A75021 succinyl-coa synthetase alpha chain related protein PAB1230 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5459121|emb|CAB50607.1| (AJ248288) SUCCINYL-COA
           SYNTHETASE ALPHA SUBUNIT RELATED PROTEIN [Pyrococcus
           abyssi]
           Length = 466
           
 Score =  369 bits (936), Expect = e-101
 Identities = 214/457 (46%), Positives = 280/457 (60%), Gaps = 28/457 (6%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           +D+ FYP+SVA+ G S   G +   ILR++V G F GKI  VN KGG +EV G++F++ +
Sbjct: 6   LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYR 64

Query: 60  RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAA 114
            ++E   EVDV+++ +PAK VP +I E   KG+ KG VVISAGF E G  DLEEEL+K A
Sbjct: 65  SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGV-KGVVVISAGFKEAGRADLEEELVKRA 123

Query: 115 KEAGIRIIGPNCAGIFGVHGKFFGSF-----EVRVNPGGLALISQSGAFGGAALAMGNEE 169
           ++ GIR++GPNC G+  +   F  +F     + R   G +A +SQSGAFG A L      
Sbjct: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183

Query: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
            VG S F+S GN ADLDESDF+ Y  DD  TKVI  YIEGVKDGRKFF A K  T  KPV
Sbjct: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243

Query: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSA 289
           IILKAG++E+GAKAA SHTGSLAGSY+IY+A FKQ   +  + M +LF+ AKA  M   A
Sbjct: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303

Query: 290 -GSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREF-----LPPQCSTRNPID 343
            G RVA++TN GG GV+ +D L + GL++A  +EET  K R+      LP   S RNP+D
Sbjct: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363

Query: 344 LIADADYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEA-----KCNKPII 398
           +I DA   RY   I  V +D NVD ++VI +      S  +   I++      +  KPI+
Sbjct: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVVVIAL----FQSPALDEGIVDVMGRVKEYGKPIV 419

Query: 399 VNFMAGELVKKGVELLNAHGIKNFPTPERAAKALYWL 435
                GE  +     +   GI  F T E    A+Y L
Sbjct: 420 FVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYAL 456


>pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii
           >gi|3257174|dbj|BAA29857.1| (AP000003) 457aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 457
           
 Score =  365 bits (928), Expect = e-100
 Identities = 199/454 (43%), Positives = 285/454 (61%), Gaps = 15/454 (3%)

Query: 1   MDYFFYPKSVAIFGSFREGA-IAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           +DYFF PK +A+ G+  +   +  E+ +N+ E   +GK+ PVN K   V+   + ++  K
Sbjct: 2   LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEVQGV-KAYKSVK 59

Query: 60  RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDL--EEELIKAAK 115
            + +E+D++I+V+P + V   + +   KG+ KG V+I+AGF E G      E+EL++ A 
Sbjct: 60  DIPDEIDLAIIVVPKRFVKDTLIQCGEKGV-KGVVIITAGFGETGEEGKREEKELVEIAH 118

Query: 116 EAGIRIIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSA 175
           + G+RIIGPNC GI   H     +F      G +A ISQSGA G   +    +E++GFS 
Sbjct: 119 KYGMRIIGPNCVGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSK 178

Query: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAG 235
           F+S GN AD+D ++ + Y AD E  K IALYIEGV++G+KF E  K  T KKP+I LKAG
Sbjct: 179 FISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAG 238

Query: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAV 295
           KSESGA+AA SHTGSLAGS++IY+A FKQ   +    ++E+   A+AF      G++VA+
Sbjct: 239 KSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFSQPLPRGNKVAI 298

Query: 296 ITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRR 355
           +TN+GGPGVL  D+L+K GL++A L E+T+ +LR FLPP  + +NP+D+IA A  E Y R
Sbjct: 299 MTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358

Query: 356 TIEVVCQDENVDSLLVICVPPIFI------PSEEIARAIIEAKCNKPIIVNFMAGELVKK 409
           T +++ QD NVD L+ ICV P F        +E I RA+ E    KP++  FMAG + +K
Sbjct: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEK 418

Query: 410 GVELLNAHGIKNFPTPERAAKALYWL-SKRKNQG 442
             ELL  +GI  +  PE  A A Y L  + KN G
Sbjct: 419 AKELLEKNGIPTYERPEDVASAAYALVEQAKNVG 452


>pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (strain Orsay)
           >gi|5458714|emb|CAB50201.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 457
           
 Score =  365 bits (926), Expect = e-100
 Identities = 202/454 (44%), Positives = 280/454 (61%), Gaps = 15/454 (3%)

Query: 1   MDYFFYPKSVAIFGSFREGA-IAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           +DYFF PK +A+ G+  +   +  E+ +N+ +    G + PVN +   V+   + ++  K
Sbjct: 2   LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVREEEVQGV-KAYKSVK 59

Query: 60  RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEE--LIKAAK 115
            +  EVD++I+V+P K V   + +   KG+ KG V+I+AGF E G    +EE  L++ A 
Sbjct: 60  DIPGEVDLAIIVVPKKFVKDTLIQCGEKGV-KGVVIITAGFGETGEEGKKEEKELVEIAH 118

Query: 116 EAGIRIIGPNCAGIFGVHGKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSA 175
             G+RIIGPNC GI   H     +F      G +A ISQSGA G   +    +E++GFS 
Sbjct: 119 RYGMRIIGPNCVGIMNTHADLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSK 178

Query: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAG 235
           F+S GN ADLD ++ + Y AD E  K IALYIEG+++GRKF E  K  T KKPVI LKAG
Sbjct: 179 FISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIALKAG 238

Query: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAV 295
           KSESGA+AA SHTGSLAGS++IY+A FKQ   +    ++E+   A+AF      G RVA+
Sbjct: 239 KSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLPRGKRVAI 298

Query: 296 ITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRR 355
           +TN+GGPGVL  D+L+K GL++A L E+T+ +LR FLPP  + +NP+D+IA A  E Y R
Sbjct: 299 MTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYR 358

Query: 356 TIEVVCQDENVDSLLVICVPPIFI------PSEEIARAIIEAKCNKPIIVNFMAGELVKK 409
           T +++ QD NVD L+ ICV P F        +E I RAI E    KP++  FMAG + +K
Sbjct: 359 TAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFMAGYVSEK 418

Query: 410 GVELLNAHGIKNFPTPERAAKALYWL-SKRKNQG 442
             ELL  +GI  +  PE  A A Y L  + KN G
Sbjct: 419 AKELLEKNGIPTYERPEDVASAAYALVEQAKNVG 452


>pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii
           >gi|3258372|dbj|BAA31055.1| (AP000007) 466aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 466
           
 Score =  364 bits (924), Expect = 1e-99
 Identities = 213/459 (46%), Positives = 280/459 (60%), Gaps = 28/459 (6%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           +D+ FYP+SVA+ G S   G +   ILR++V   F GKI  VN KGG +EV G++F++ K
Sbjct: 6   LDFLFYPESVAVIGASHVPGKVGNGILRSLVNN-FRGKIYAVNVKGGEIEVNGKKFKVYK 64

Query: 60  RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAA 114
            +++   +VDV+++ +PAK VP +I E   KG+ KG VVISAGF E G  DLEEEL+K A
Sbjct: 65  SIKDVPDKVDVAVIAVPAKFVPEVIDECGEKGV-KGVVVISAGFKEAGRADLEEELVKRA 123

Query: 115 KEAGIRIIGPNCAGIFGVHGKFFGSF-----EVRVNPGGLALISQSGAFGGAALAMGNEE 169
           K+ GIR++GPNC G+  +   F  +F     + R   G +A +SQSGAFG A L      
Sbjct: 124 KKWGIRVVGPNCLGVTNLENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183

Query: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
            VG S F+S GN ADLDESDF+ Y  +D  TKVI  YIEGVKDG+KFF   K  T  KPV
Sbjct: 184 EVGMSKFISLGNMADLDESDFMLYLKNDPKTKVITAYIEGVKDGKKFFNVAKETTKVKPV 243

Query: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSA 289
           I+LKAG++E+GAKAA SHTGSLAGSY IY+AVF+Q   +  + M +LF+ AKA  M + A
Sbjct: 244 IVLKAGRTEAGAKAAASHTGSLAGSYRIYEAVFEQTGILAAKSMRQLFNYAKALAMQKPA 303

Query: 290 -GSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREF-----LPPQCSTRNPID 343
            G RVA++TN GG GV+ +D L + GL++A LSEET  K R+      LP   S  NP+D
Sbjct: 304 NGDRVAIVTNGGGAGVMMSDGLLERGLKLAELSEETKDKFRKAIEEGKLPEHMSYANPVD 363

Query: 344 LIADADYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEA-----KCNKPII 398
           +I DA   RY   I  V +D NVD L VI +      S  +   I++      K  KPI+
Sbjct: 364 VIGDAPSSRYELAINYVLEDPNVDILAVIAL----FQSPALDEGIVDVMDRVKKYGKPIV 419

Query: 399 VNFMAGELVKKGVELLNAHGIKNFPTPERAAKALYWLSK 437
                GE  +K    +   G+  F T E    A+Y L K
Sbjct: 420 FIAPGGEFPEKIARRIEKVGVPVFETVEDGVDAVYALVK 458


>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7448044|pir||B69401 conserved hypothetical protein
           AF1211 - Archaeoglobus fulgidus
           >gi|2649370|gb|AAB90033.1| (AE001020) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 685
           
 Score =  346 bits (879), Expect = 2e-94
 Identities = 193/443 (43%), Positives = 275/443 (61%), Gaps = 15/443 (3%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           M+  FYPK VA+ G S +EG +   I++N+    F G +  VNPK   + +    +    
Sbjct: 1   MERLFYPKVVAVIGASPQEGKVGNTIMKNL--RNFSGTVYAVNPKYREI-LGFPCYPSVL 57

Query: 60  RLEEEVDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVG--NVDLEEELIKAAKE 116
           ++ E VD++I+V+PAKLVP  + E  +   +GAVVISAGF E G     LE EL++ A+ 
Sbjct: 58  KIPENVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERELVEVAER 117

Query: 117 AGIRIIGPNCAGIFGVHGKFFGSFEVRVNP--GGLALISQSGAFGGAALAMGNEENVGFS 174
            G++++GPNC G+         +F  RV P  G +A +SQSGAF  A L       VGFS
Sbjct: 118 YGVKLVGPNCLGMINTEIAMNATFS-RVAPEKGRIAFLSQSGAFILAVLEWSKRNGVGFS 176

Query: 175 AFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKA 234
             VS GN A LDESDFL Y A D++T VI +Y+EGV+DGRKF    K    +KPV+++KA
Sbjct: 177 KVVSLGNKAMLDESDFLEYLAKDDSTDVILIYMEGVEDGRKFMRVAKSVARRKPVVVMKA 236

Query: 235 GKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVA 294
           GKS+SGAKAA SHTGSLAGSYE Y+A F+Q   IE   +EELFD A     Y+ AG+ +A
Sbjct: 237 GKSQSGAKAASSHTGSLAGSYEAYRAAFRQSGVIEASSVEELFDFALLLLKYRKAGN-LA 295

Query: 295 VITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYR 354
           ++TNSGGPGV+A D  ++ G+ +A  + ET+ KL+EFLP + +  NP+D++ DA  ER+ 
Sbjct: 296 ILTNSGGPGVMAADACDQFGVPLANFNFETIRKLKEFLPAESNFYNPVDILGDASAERFS 355

Query: 355 RTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELL 414
           R+++++ +DENVD +L I  P   +   + A +++     K  +  FM GE V +   +L
Sbjct: 356 RSLQILSEDENVDIVLTILTPTAQMDFLKAAESVV----GKNAVCCFMGGESVDESERIL 411

Query: 415 NAHGIKNFPTPERAAKALYWLSK 437
            + GI NF  P RA +A+  L +
Sbjct: 412 RSSGIPNFFDPVRAVRAISVLGR 434


>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
           protein homolog MJ0590 - Methanococcus jannaschii
           >gi|1591298|gb|AAB98580.1| (U67507) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 704
           
 Score =  339 bits (861), Expect = 3e-92
 Identities = 195/449 (43%), Positives = 275/449 (60%), Gaps = 18/449 (4%)

Query: 1   MDYFFYPKSVAIFGSFR-EGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRR-FEIR 58
           + Y  YPKSVAI G+ + EG +   I++N+ +  F GKI P+NPK    E+ G + ++  
Sbjct: 8   LKYISYPKSVAIIGASKTEGKVGYAIMKNLKD--FNGKIYPINPKYD--EIFGIKCYKSV 63

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAAKE 116
             +E+++D++++V+P  +VP ++ E   KG+ KGAV+I+AGFSEVGN +LE ++ + AK 
Sbjct: 64  LDVEDDIDLAVIVVPNIVVPKVLEECGKKGV-KGAVIITAGFSEVGNYELENKIKEIAKR 122

Query: 117 AGIRIIGPNCAGIFGVHGKFFGSFEVRVNP-GGLALISQSGAFGGAALAMGNEENVGFSA 175
             IRIIGPNC GI   H     +F     P GG+++ISQSGA   A L +    N+GFS 
Sbjct: 123 YNIRIIGPNCLGIMNTHINLNATFAKVFPPKGGVSIISQSGAVLNAILDIAPLLNIGFSK 182

Query: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAG 235
            VS GN AD+ ESD L YF DDE+TK++ LYIEG+KD ++F +  K  + KKP+I LK+G
Sbjct: 183 VVSIGNKADIQESDLLEYFLDDEDTKIVVLYIEGLKD-KRFLKVAKKLSKKKPIIALKSG 241

Query: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSR-VA 294
           ++E G KAA+SHTGSLAG   IY+A FK+   I     EEL D    F    +  S  + 
Sbjct: 242 RTEVGKKAAKSHTGSLAGEDVIYEAAFKEAGIIRAYTFEELVDLIHLFSTQPTISSNEIG 301

Query: 295 VITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYR 354
           +ITN+GG GVLA D      ++++   + T+ KL+  LPP  +  NP+D+I DA  ERY+
Sbjct: 302 IITNAGGFGVLAADSCVDYNMKLSNFEKSTIEKLKNILPPTANISNPLDIIGDATPERYK 361

Query: 355 RTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEAK------CNKPIIVNFMAGELVK 408
           + IEV+ +D NV  LLVI  P       E+A++IIE K       NKP+I +F+ G  VK
Sbjct: 362 KVIEVLAEDSNVKGLLVILTPQEMTKPLEVAKSIIEVKNSHKEFKNKPLITSFVGGVSVK 421

Query: 409 KGVELLNAHGIKNFPTPERAAKALYWLSK 437
                L  +GI  + TPE   KAL  L K
Sbjct: 422 GAKSYLRKNGIPAYITPENGVKALSHLYK 450


>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
           >gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 460
           
 Score =  336 bits (852), Expect = 3e-91
 Identities = 194/451 (43%), Positives = 278/451 (61%), Gaps = 16/451 (3%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           ++  F PKS+A+ G S + G I   I++N++E G+EGKI PVN KGG +E++GR+F++ K
Sbjct: 3   LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62

Query: 60  RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIK 112
            + E   EVD++++V+PAK VP ++ E   KG+ K A +IS+GF E+G     +E++L++
Sbjct: 63  SILEVPDEVDMAVIVVPAKSVPEVVEECGKKGV-KVAPIISSGFGELGEEGKKVEQQLVE 121

Query: 113 AAKEAGIRIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENV 171
            A++ G+RI+GPN  G+     K   +F    V PG LALISQSGA G A +     E +
Sbjct: 122 TARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181

Query: 172 GFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVII 231
           G SA VS GN AD+D++D L +F DDENTK I +Y+EGVKDGR+F E  K  + KKP+I+
Sbjct: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTKAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241

Query: 232 LKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAG 290
           +KAG+SE GAKAA SHTGSLAGS  IY A FKQ   +    + E FD A+A   + +  G
Sbjct: 242 IKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQTGVLRALTIGEAFDWARALSNLPEPQG 301

Query: 291 SRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY 350
             V +ITN GG GV+ATD  E+ GL +     E +      +PP  S +NP+DL   AD 
Sbjct: 302 ENVVIITNGGGIGVMATDAAEEEGLHLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADA 360

Query: 351 ERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII----EAKCNKPIIVNFMAGEL 406
           + Y   I       ++ S++V+      +   E+A  II    E+   KP++V  + G  
Sbjct: 361 KSYEGAIRDALAHPDMHSIIVLYCQTAVLDPRELADVIIREYNESGRKKPLVVAIVGGIE 420

Query: 407 VKKGVELLNAHGIKNFPTPERAAKALYWLSK 437
            K+ +++LN +GI  +P PERA KAL  L K
Sbjct: 421 AKQAIDVLNENGIPAYPEPERAVKALSALYK 451


>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
           >gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 460
           
 Score =  335 bits (851), Expect = 5e-91
 Identities = 191/446 (42%), Positives = 275/446 (60%), Gaps = 16/446 (3%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           ++  F PKS+A+ G S + G I   I++N++E G+EGKI PVN KGG +E++GR+F++ K
Sbjct: 3   LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62

Query: 60  RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIK 112
            + E   EVD++I+V+PAK VP ++ E   KG+ K   +IS+GF E+G     +E++L++
Sbjct: 63  SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGV-KVVPIISSGFGELGEEGKKVEQQLVE 121

Query: 113 AAKEAGIRIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENV 171
            A++ G+RI+GPN  G+     K  G+F    V PG LALISQSGA G A +     E +
Sbjct: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181

Query: 172 GFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVII 231
           G SA VS GN AD+D++D L +F DDENT+ I +Y+EGVKDGR+F E  K  + KKP+I+
Sbjct: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241

Query: 232 LKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAG 290
           +KAG+SE GAKAA SHTGSLAGS  IY A FKQ   +    + E FD A+A   + +  G
Sbjct: 242 IKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQG 301

Query: 291 SRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY 350
             V +ITN GG GV+ATD  E+ GL++     E +      +PP  S +NP+DL   AD 
Sbjct: 302 DNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADA 360

Query: 351 ERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII----EAKCNKPIIVNFMAGEL 406
           + Y   I        + S++V+      +   ++A  II    E+   KP++V  + G  
Sbjct: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420

Query: 407 VKKGVELLNAHGIKNFPTPERAAKAL 432
            K+ ++ LN +GI  +P PERA KAL
Sbjct: 421 AKEAIDTLNENGIPAYPEPERAVKAL 446


>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
           [validated] - Pyrococcus furiosus
           >gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
           synthetase [Pyrococcus furiosus]
           Length = 462
           
 Score =  335 bits (849), Expect = 8e-91
 Identities = 191/451 (42%), Positives = 276/451 (60%), Gaps = 16/451 (3%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           ++  F PKSVA+ G S + G I   I++N++E G+EGKI PVN KGG +E+ GR+F++ K
Sbjct: 3   LEALFNPKSVAVIGASAKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEIEINGRKFKVYK 62

Query: 60  ---RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIK 112
               + +EVD++++V+PAK VP ++ E   KG+ K   +IS+GF E+G     +E++L++
Sbjct: 63  SVLEIPDEVDMAVIVVPAKFVPQVLEECGQKGV-KVVPIISSGFGELGEEGKKVEQQLVE 121

Query: 113 AAKEAGIRIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENV 171
            A++ G+RI+GPN  G+     K   +F    V PG LALISQSGA G A +     E +
Sbjct: 122 TARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181

Query: 172 GFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVII 231
           G SA VS GN AD+D++D L +F DDENT+ I +Y+EGVKDGR+F E  K  + KKP+I+
Sbjct: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241

Query: 232 LKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAG 290
           +KAG+SE GAKAA SHTGSLAGS ++Y A FKQ   +    + E FD A+A   + +  G
Sbjct: 242 IKAGRSERGAKAAASHTGSLAGSDKVYSAAFKQSGVLRAYTIGEAFDWARALSNLPEPQG 301

Query: 291 SRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY 350
             V +ITN GG GV+ATD  E+ GL +    EE +      +PP  S +NP+DL   AD 
Sbjct: 302 DNVVIITNGGGIGVMATDAAEEEGLHLYDNLEE-LKIFANHMPPFGSYKNPVDLTGMADG 360

Query: 351 ERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII----EAKCNKPIIVNFMAGEL 406
           + Y   I        + S+ V+      +   E+A  +I    E+   KP++V  + G  
Sbjct: 361 KSYEGAIRDALAHPEMHSIAVLYCQTAVLDPRELAEIVIREYNESGRKKPLVVAIVGGIE 420

Query: 407 VKKGVELLNAHGIKNFPTPERAAKALYWLSK 437
            K+ +++LN +GI  +P PERA KAL  L K
Sbjct: 421 AKEAIDMLNENGIPAYPEPERAIKALSALYK 451


>pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii
           >gi|3258225|dbj|BAA30908.1| (AP000007) 472aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 472
           
 Score =  331 bits (840), Expect = 9e-90
 Identities = 190/447 (42%), Positives = 266/447 (59%), Gaps = 20/447 (4%)

Query: 4   FFYPKSVAIFGSF-REGAIAREILRNIVE----GGFEGKIIPVNPKGGTVEVAGRRFEIR 58
           FF PK+VAI G+  ++G +   I  N  +    G F+G I PVNPK   +E   + +   
Sbjct: 13  FFEPKAVAIIGATNKKGKVGNVIFENFKKNKEKGIFKGNIYPVNPKLDEIE-GYKVYHDV 71

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIKAA 114
             L ++ D++++ IPA  VP  +R++  KG+ K  ++I+ GF E+G     +E+E+++ A
Sbjct: 72  SELPDDTDLAVIAIPAPAVPETMRKIGEKGI-KSVIIITGGFGELGEEGKRMEQEILEIA 130

Query: 115 KEAGIRIIGPNCAGIF----GVHGKFFGSFEVRVNPGG-LALISQSGAFGGAALAMGNEE 169
           +  GIR+IGPNC G++    GV   F    ++   P G +A ISQSGAF  A L      
Sbjct: 131 RANGIRVIGPNCVGVYVPDTGVDTVFLPDEKMDRPPSGPIAFISQSGAFAAAMLDWAAMA 190

Query: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
            +G    VSYGN  D+D++D + YFA D+  KV+  YIEGVKDGRKF E  K  T  KP+
Sbjct: 191 GIGIGKMVSYGNKIDVDDADLMEYFAHDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPI 250

Query: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-S 288
           I LK+G++E GAKAA SHTGSLAG   IY AVFKQ   I  E+ E +FD AKAF   +  
Sbjct: 251 IALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLP 310

Query: 289 AGSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADA 348
            G R+ +IT+ GG GV+A+D + K GL++A LSEET+  LRE  PP     NP D++ D 
Sbjct: 311 KGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLRERFPPHAVVGNPTDVVGDT 370

Query: 349 DYERYRRTIEVVCQDENVDSLLVICVPPI-FIPSEEIARAIIE--AKCNKPIIVNFMAGE 405
           D ERYR  +E   +D NVD++L+I +  +  +  EE+   I +   K +KPI+V  M G 
Sbjct: 371 DAERYRLALEAFTKDPNVDAILLIVLFQVPLLDEEEVINIITDYAKKSDKPIVVVSMGGY 430

Query: 406 LVKKGVELLNAHGIKNFPTPERAAKAL 432
              K   +L   GI  +PTPER  +AL
Sbjct: 431 KTDKYARMLEERGIPVYPTPERGVRAL 457


>pir||E75149 succinyl-coa synthetase alpha chain related protein PAB2112 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457786|emb|CAB49276.1| (AJ248284) SUCCINYL-COA
           SYNTHETASE ALPHA CHAIN related protein [Pyrococcus
           abyssi]
           Length = 472
           
 Score =  326 bits (826), Expect = 4e-88
 Identities = 187/447 (41%), Positives = 267/447 (58%), Gaps = 20/447 (4%)

Query: 4   FFYPKSVAIFGSF-REGAIAREIL----RNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIR 58
           FF P++VAI G+  ++G +   I     RN  +G F+G I PVNPK   ++   + +   
Sbjct: 13  FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID-GYKVYHDV 71

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIKAA 114
             L ++ D++++ IPA  VP  ++++  KG+ K  ++I+ GF E+G     +E+E+++ A
Sbjct: 72  SELPDDTDLAVIAIPAPAVPETMKKIAEKGI-KAVIIITGGFGELGEEGKRMEQEILEIA 130

Query: 115 KEAGIRIIGPNCAGIF----GVHGKFFGSFEV-RVNPGGLALISQSGAFGGAALAMGNEE 169
           +  GIR+IGPNC G++    GV   F    ++ R   G +A ISQSGAF  A L      
Sbjct: 131 RANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMA 190

Query: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
            +G    VSYGN  D+D++D + YFA D+  KV+  YIEGVKDGRKF E  K  T  KP+
Sbjct: 191 GIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPI 250

Query: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-S 288
           I LK+G++E GAKAA SHTGSLAG   IY AVFKQ   I  E+ E +FD AKAF   +  
Sbjct: 251 IALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLP 310

Query: 289 AGSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADA 348
            G R+ +IT+ GG GV+A+D + K GL++A LSEET+  L+E  PP     NP D++ D 
Sbjct: 311 KGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDT 370

Query: 349 DYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII---EAKCNKPIIVNFMAGE 405
           D ERYR  +E   +D NVD++L+I +  + +  E+    II     K +KPI+V  M G 
Sbjct: 371 DAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMGGY 430

Query: 406 LVKKGVELLNAHGIKNFPTPERAAKAL 432
              K  ++L   GI  +PTPER  +AL
Sbjct: 431 KTDKYAKMLEERGIPVYPTPERGVRAL 457


>emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Thermoplasma
           acidophilum]
           Length = 698
           
 Score =  284 bits (720), Expect = 1e-75
 Identities = 165/444 (37%), Positives = 257/444 (57%), Gaps = 13/444 (2%)

Query: 5   FYPKSVAIFGSFREGA-IAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLEE 63
           FYP+SVA+ G+  +   I  +I+RN+ EGG++GK+ PVN KGG + +    +     + +
Sbjct: 12  FYPESVAVIGASADKTKIGYQIVRNLKEGGYQGKVYPVNRKGGNI-LGYTVYPSIGDVPD 70

Query: 64  EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIRI 121
           +VD++I+ +PA+  P    E   KG+  G +V+++GFSEVG  DLE++L++  ++  +R+
Sbjct: 71  KVDLAIISVPAEHTPEAAEECGKKGVF-GIIVVASGFSEVGRKDLEDQLVEVCRKYNMRL 129

Query: 122 IGPNCAGIFGVHGKFFGSFEVRV-NPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYG 180
           +GPN  G+     K   SF   +  PG + ++SQSGA      AM      G S  +S G
Sbjct: 130 LGPNVVGLMNNVLKLNASFAPYLPYPGTIGMVSQSGALIVGLDAMTWSNKTGTSFLISIG 189

Query: 181 NAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESG 240
           N ADLD SD + + A+D N   I+LY EG+K GR+F +  +  + KKP+++LK+G S+ G
Sbjct: 190 NMADLDFSDLVSFLAEDNNVSCISLYTEGLKAGRRFIDTAR--SIKKPIVMLKSGISKHG 247

Query: 241 AKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMY-QSAGSRVAVITNS 299
           + AA SHTGSLAGS+ +Y    KQ   +    +EELFD +    +     G  + V+TN 
Sbjct: 248 SVAAASHTGSLAGSHRVYDGALKQAGVVRANSIEELFDLSLTLSLQPPMGGDNLMVVTNG 307

Query: 300 GGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEV 359
           GG GVLATD+ E  G+ +   S++  AK+R+ +P   ST+NPID+ A A  E Y  TI+ 
Sbjct: 308 GGIGVLATDQAELSGIPLQTPSDDLQAKIRQVIPSFGSTKNPIDMSAMATPEIYADTIKT 367

Query: 360 VCQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNK----PIIVNFMAGELVKKGVELLN 415
           V +D++VD L+V+      +   + A+ II    +     P++  F+ GE  K     L 
Sbjct: 368 VMEDDSVDGLVVLYCEVANLDPSDAAKGIINGVLSSNRKIPVVAGFVGGEHSKNASLYLI 427

Query: 416 AHGIKNFPTPERAAKALYWLSKRK 439
            +GI  F +P++A KA+  L   K
Sbjct: 428 KNGIPTFDSPDKAVKAMAALRNHK 451


>gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entamoeba histolytica]
           Length = 713
           
 Score =  279 bits (705), Expect = 6e-74
 Identities = 160/441 (36%), Positives = 255/441 (57%), Gaps = 11/441 (2%)

Query: 5   FYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIR-KRLE 62
           F PKSV + G S R+ ++   ++ N+++GG++G + PV  K    E+ G++   +  ++E
Sbjct: 7   FNPKSVPVIGASDRKESVGYAVMNNMIKGGYKGNLYPVGRKP---ELFGKKCYAKIGKIE 63

Query: 63  EEVDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVGNVDLEE--ELIKAAKEAGI 119
           E+VD++++ IPAK VPG+  E  +   KG ++I+AGF+E G    +   E+    ++  +
Sbjct: 64  EKVDLAVIAIPAKFVPGVCIECGEAGVKGLIIITAGFAEAGEEGKKMCIEIQATCQKYNM 123

Query: 120 RIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVS 178
           R+IGPNC GI         SF  V    GG+A ISQSGA   A L     ++VGFS FVS
Sbjct: 124 RMIGPNCLGIINPRDGVNASFASVMPEAGGVAFISQSGALCTAILDWAANQHVGFSYFVS 183

Query: 179 YGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSE 238
            G++ D D +D   +FA D     I +YIE +KD +KF    +   + KP+I+LKAGKS 
Sbjct: 184 IGSSIDTDYADLFEFFAKDPKVTSILMYIESIKDAKKFVLRAREFAADKPIILLKAGKSS 243

Query: 239 SGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-SAGSRVAVIT 297
            GA AA SHTGSLAG+  +Y AVF +   I V+ + +L+D A           +R+ +IT
Sbjct: 244 EGAAAAMSHTGSLAGNDAVYDAVFDRCGCIRVDSICDLWDCAHVLATQNIPQNNRLCIIT 303

Query: 298 NSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTI 357
           N+GGPGV++TD+L  +   +A+LSE T+ +L  FL P  S  NP+D++ DA    Y++T+
Sbjct: 304 NAGGPGVISTDRLVSVHGHLAKLSESTMNELNAFLSPFWSHSNPVDVLGDATAGVYQKTL 363

Query: 358 EVVCQDENVDSLLVICVPPIFIPSEEIARAIIE-AKCNKPIIVNFMAGELVKKGVELLNA 416
           ++V +D  +D ++V+  P        +A++++E        + +    +  + GV++L  
Sbjct: 364 DIVIKDPQIDGVVVVLTPQAMTDPVAVAKSLVEHGPYQNQSLPHGWVNQKSEAGVKILEE 423

Query: 417 HGIKNFPTPERAAKALYWLSK 437
             I NF TPERA  A  ++ +
Sbjct: 424 GKIPNFETPERAVTAFGYIMR 444


>gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 660
           
 Score =  269 bits (680), Expect = 5e-71
 Identities = 157/442 (35%), Positives = 248/442 (55%), Gaps = 13/442 (2%)

Query: 1   MDYFFYPKSVAIFGSFR-EGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           ++Y F P+S+A+ G+ R +  +   I RN++   F+GK+ P+N K   VE   + ++  K
Sbjct: 4   LNYLFKPRSIAVVGASRHKEKVGNVIFRNLLST-FQGKLYPINTKAEDVEGV-KAYKSVK 61

Query: 60  RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAAKEA 117
            + +++D+ ++ +P ++VP  + E   KG+ K ++VI+AGF EVG   LE E+I  A++ 
Sbjct: 62  EIPDDIDLGVIAVPREVVPQTMEEFVEKGV-KASIVITAGFREVGEEKLENEVISIARKG 120

Query: 118 GIRIIGPNCAGIFGVHGKFFGSFEVR-VNPGGLALISQSGAFGGAALAMGNEENVGFSAF 176
           GIR++GPN  GI  +  +F  +F    V  G + L+ QSG  G   L    +  +G S  
Sbjct: 121 GIRVLGPNTFGI--ITPEFNATFTYTDVKRGNVGLVVQSGGLGVYMLNWAQKYRIGISYM 178

Query: 177 VSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGK 236
           VS GN AD+ E + + Y + D  T+ I +Y+EGV DG  F E L  AT +KPV+ LK G 
Sbjct: 179 VSLGNQADVKEYEVINYLSKDAETRAIFVYLEGVSDGNAFLEELPEATRRKPVVFLKGGV 238

Query: 237 SESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAGSRVAVI 296
           S SGA AA++HTGSLAGS+E++KA       I V+ + ++ + AK     +     + VI
Sbjct: 239 SSSGASAAKTHTGSLAGSFEVFKAAVNTIGGILVDNLHDMLNLAKILMYSEPISEELLVI 298

Query: 297 TNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRT 356
           TNSGG GVL +D+++K GL +  + E    +L + LPP    +NP+DL  DAD ERY   
Sbjct: 299 TNSGGHGVLVSDEIDKNGLRLVEIPEWMKKELTKILPPTSLPKNPLDLTGDADRERYHNA 358

Query: 357 IEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELVKKGVELLNA 416
           +++V   +    ++V  +P   +   ++AR I   K    I V     E     +++L  
Sbjct: 359 LKIVSSLDCTKLVIVQSLP--MVSCSDVARVISNFKGKGVIGVTMGLDE--DMALKILET 414

Query: 417 HGIKNFPTPERAAKALYWLSKR 438
            GI  +  PE A KA+ + + R
Sbjct: 415 TGIPGYTFPEDAVKAIKYYTFR 436


>gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giardia intestinalis]
           Length = 726
           
 Score =  265 bits (669), Expect = 1e-69
 Identities = 158/443 (35%), Positives = 244/443 (54%), Gaps = 16/443 (3%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAG-RRFEIR 58
           + +   P SVA+ G S   G +   ++ NI E G+ GK+ P+NP     E+ G + ++  
Sbjct: 15  LSFLTNPASVAVIGASPNAGKVGNTVVTNIKESGYTGKVYPINPTA--TEILGYKTYKSV 72

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVGN--VDLEEELIKAAK 115
             + + +DV IVVIP+K V    +E  +   K  VVI+AGF E+G   V +E++L K  K
Sbjct: 73  LDVPDSIDVVIVVIPSKAVLAAAKECAQKKVKSLVVITAGFKEIGGEGVQMEQDLTKICK 132

Query: 116 EAGIRIIGPNCAGIFGVH-GKFFGSFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFS 174
           +AGIR++GPNC GI   +    F S   + + G +A +SQSGA   + L       +GFS
Sbjct: 133 DAGIRLVGPNCLGIVTPNLNCTFAS--AKPSKGSIAFLSQSGAMLTSILDWALTNGIGFS 190

Query: 175 AFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKA 234
            F+S GN AD+DE D +   A+D NT +I LY+E + DGRKF E +     KKPVIILK+
Sbjct: 191 NFISLGNKADVDEVDLIMEVAEDPNTDIILLYLESIVDGRKFLEQIPTCVHKKPVIILKS 250

Query: 235 GKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-SAGSRV 293
           G S +GA AA SHTG+LAG+   +   F++   +    M +LFD  + F  ++   G   
Sbjct: 251 GTSAAGAAAASSHTGALAGNDIAFDLAFEKAGVLRAATMSDLFDLGRLFVSHRLPKGDNF 310

Query: 294 AVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERY 353
            ++TN+GGPG++ TD  E   + +A LS++T   L + LP + S +NP+D++ DA  +RY
Sbjct: 311 VIVTNAGGPGIVTTDAFETYHVGMAALSDKTKEALAKVLPGEASVKNPVDIVGDAPPKRY 370

Query: 354 RRTIEVVCQD--ENVDSLLVICVPPIFIPSEEIARAIIEAKCNKP---IIVNFMAGELVK 408
              +E+  ++  E V   +++  P       E+A          P   ++  FM G  ++
Sbjct: 371 EDALEICFKEPPETVAGAVILVTPQGQTKPCEVAELCTRMYAKYPDRLVVSAFMGGLTMQ 430

Query: 409 KGVELLNAHGIKNFPTPERAAKA 431
           +  ++LN   +  FP PE A  A
Sbjct: 431 EPSKILNNAKMPVFPFPEPAIHA 453


>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
           >gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
           protein SC8A6.03c [Streptomyces coelicolor A3(2)]
           Length = 714
           
 Score =  255 bits (645), Expect = 6e-67
 Identities = 149/439 (33%), Positives = 239/439 (53%), Gaps = 15/439 (3%)

Query: 7   PKSVAIFGSFRE-GAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRR-FEIRKRLEEE 64
           P SVA+ G+  E G I   ++RN+V+GGF G+I PVNPK    ++ GR+ ++    +  E
Sbjct: 261 PASVAVIGASGEPGKIGNSVMRNLVDGGFAGEIHPVNPKAD--DILGRKAYKSVTDVPGE 318

Query: 65  VDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIRIIG 123
           VDV++  IPA+ V   + E+ +     AV+I +GF+E G   L++E++  A+  G+R++G
Sbjct: 319 VDVAVFAIPARFVAAALEEVGRKRIPNAVLIPSGFAETGEQALQDEIVAVAERHGVRLLG 378

Query: 124 PNCAGIFGVHGKFFGSFEVRVN-PGGLALISQSGAFGGAALAMGNEENVGFSAFVSYGNA 182
           PN  G +        +F    +  GG+AL SQSG  G A L        G SA V  GN 
Sbjct: 379 PNIYGYYSTWQDLCATFCTPYDVKGGVALTSQSGGIGMAILGFARTTKTGVSAIVGLGNK 438

Query: 183 ADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESGAK 242
           +DLDE D L +F +D +T+ IA+++E +KDGR F EA +    +KPV++LKAG++ +GAK
Sbjct: 439 SDLDEDDLLTWFGEDPHTECIAMHLEDLKDGRAFVEAARATVPRKPVVVLKAGRTAAGAK 498

Query: 243 AAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQS-AGSRVAVITNSGG 301
           AA SHTG+LAG   +Y  + +Q   I    + E+ + A+A  +  +  G  V +IT +GG
Sbjct: 499 AAGSHTGALAGDDAVYDDILRQAGVIRAPGLNEMLEYARALPVLPAPEGDNVVIITGAGG 558

Query: 302 PGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVVC 361
            GVL +D +   GL +  +  +     R F+PP  +  NP+D+        Y  TI +  
Sbjct: 559 SGVLLSDAVTDNGLSLMEIPPDLDRAFRAFIPPFGAAGNPVDITGGEPPSTYEATIRLGL 618

Query: 362 QDENVDSLLV----ICVPPIFIPSEEIARAIIEAK---CNKPIIVNFMAGELVKKGVELL 414
           +D  + +L++      V P  + +E  AR + E +     KP++ +      V++  + L
Sbjct: 619 EDPRIHALVLGYWHTIVTPPMVFAELTARVVAEFRERGVEKPVVASLAGDVEVEEACQYL 678

Query: 415 NAHGIKNFP-TPERAAKAL 432
              G+  +P T E+    L
Sbjct: 679 FERGVVAYPYTTEKPVAVL 697


>gi|11499522 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483184|pir||A69492 conserved hypothetical protein
           AF1938 - Archaeoglobus fulgidus
           >gi|2648606|gb|AAB89317.1| (AE000970) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 673
           
 Score =  252 bits (636), Expect = 7e-66
 Identities = 144/384 (37%), Positives = 227/384 (58%), Gaps = 19/384 (4%)

Query: 5   FYPKSVAIFGSFRE-GAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLEE 63
           FYPKSVA+ G+ R  G     I+ N+ + GF GKI PVNP    + +  + +     + +
Sbjct: 222 FYPKSVAVIGASRTVGKPGFNIVWNLKQNGFMGKIYPVNPNADKI-LELKCYPSILDIPD 280

Query: 64  EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVG--NVDLEEELIKAAKEAGI 119
           EVD++I+ +PAK+VP ++ E   KG+ KGAV++S+GFSE G    + E  +++ AK+ GI
Sbjct: 281 EVDMAIIAVPAKIVPEVMAECAQKGI-KGAVIVSSGFSEEGEKGAEYERRVLEIAKKHGI 339

Query: 120 RIIGPNCAGIFGVHGKFFGSFEVR--VNPGGLALISQSGAFGGAA--LAMGNEENVGFSA 175
           RI GPN  G+      F  SF ++  +  G + +I+Q+G F G    +   N  ++GFS 
Sbjct: 340 RIFGPNTTGVLNTENGFITSFAIQPVIKKGNIGIIAQTGLFLGIMMDIVTSNHPSIGFSK 399

Query: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAG 235
            V  GN  D+++ + L +   DE TKVI +Y+EG+K+GR F++    ++++KP+++ K+G
Sbjct: 400 IVGMGNKIDVEDYEVLDFLLKDEQTKVIGIYMEGIKNGRAFYDVA--SSAEKPIVVFKSG 457

Query: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-SAGSRVA 294
           ++E G KAA SHT S+ G  +++ AV +Q N + V   +ELFD  KAF +     G RVA
Sbjct: 458 RTEYGQKAAMSHTASICGDDDVFDAVCRQANLVRVYSFDELFDVTKAFSLQPLPKGDRVA 517

Query: 295 VITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY---- 350
           +I  +G   V  +D     GL++A  S++TV K+ E  P   +  NPID+    +Y    
Sbjct: 518 IIHYTGSGCVQGSDAAYFAGLKLAEFSKDTVDKISEVTPEWHNVNNPIDIWPMVEYYGAF 577

Query: 351 ERYRRTIEVVCQDENVDSLLVICV 374
           + Y+  IE V +DE VDS ++ CV
Sbjct: 578 KAYQTAIEAVMEDEGVDS-VIACV 600


>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483097|pir||G69398 conserved hypothetical protein
           AF1192 - Archaeoglobus fulgidus
           >gi|2649402|gb|AAB90053.1| (AE001022) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 664
           
 Score =  249 bits (629), Expect = 5e-65
 Identities = 163/461 (35%), Positives = 269/461 (57%), Gaps = 35/461 (7%)

Query: 1   MDYFFYPKSVAIFGSFREGAI-AREILRNIVEGGFEGKIIPVNPKGGTVEVAGRR-FEIR 58
           + +FF  KSVA+ G+ R        +L N+   GF GK+ PVNP  G  E+ G + +   
Sbjct: 218 ISFFFKAKSVAVIGASRNLLKPGGRVLSNLKHLGFRGKVYPVNPNAG--EILGYKCYPSV 275

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSE--VGNVDLEEELIKAA 114
           + + ++VD++++ +P+K    +++E   KG+ KG +V+SAGF+E      +LE ++++ A
Sbjct: 276 RAIPDKVDLAVIAVPSKNAIEVVKECAEKGV-KGIIVLSAGFAEGWEQGKELERQIVEIA 334

Query: 115 KEAGIRIIGPNCAGIFGVHGKFFGSFEV--RVNPGGLALISQSGAFGGAALAMGNEENVG 172
           +++G+RI+GPN  GI          F V  ++  G + +++QSGA     L      +VG
Sbjct: 335 RKSGMRIVGPNTMGILDPESGLTSFFSVLRKIGQGNIGVLAQSGAVANFILLP--LWHVG 392

Query: 173 FSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIIL 232
           FS  V+ GN AD+ E + L +   DE T+V+A Y+EG  +GRKF+E +K +T  KP+++L
Sbjct: 393 FSKIVAIGNKADVGEVEVLNFLLKDEKTRVVAAYLEGFTNGRKFYELMKAST--KPIVVL 450

Query: 233 KAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-SAGS 291
           K+G++E+G ++A SHT S++ S EI++A  KQ    +V + EEL DAAKA  +     G+
Sbjct: 451 KSGRTEAGKRSALSHTASISTSEEIFEAACKQAGVAKVYDFEELVDAAKALALQPLPRGT 510

Query: 292 RVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY- 350
           RV VI  SG   V++ D + + GLE+A+ SE+T+ +L E  P   S  NP+DL   A+  
Sbjct: 511 RVGVIQPSGAECVMSADAVVENGLELAKYSEKTLERLYELAPEWHSINNPLDLYPIAEKS 570

Query: 351 --ERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIE----AKCNKPIIVNFM-- 402
             E +   ++V  +DEN+D++    V  +FIPS  I +  ++     K +KP++      
Sbjct: 571 GDEVFNEVLKVFNEDENIDAI----VAGVFIPS--IMKLGVDFSWTRKFSKPVLFTMKDD 624

Query: 403 AGELVKKGVELLNAHGIKNFPTPERAAKAL---YWLSKRKN 440
             EL +  +E +   G+  +PTPERA +AL     ++KRK+
Sbjct: 625 IEELRQARIE-IERSGVPVYPTPERAVRALRHMVTVAKRKS 664


>pir||C82443 conserved hypothetical protein VCA0574 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9657984|gb|AAF96476.1|
           (AE004388) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 893
           
 Score =  244 bits (617), Expect = 1e-63
 Identities = 151/451 (33%), Positives = 247/451 (54%), Gaps = 20/451 (4%)

Query: 7   PKSVAIFG----SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLE 62
           PKSVA+ G    SFR G I   +++N+++GGF+G I+PV P    V      ++    L 
Sbjct: 10  PKSVAVIGASVRSFRAGNI---VMKNLLQGGFDGAIMPVTPYYPAV-CGVLAYKTISDLP 65

Query: 63  EEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFS-EVGNVDLEEELIKAAKEAGI 119
              D++I+   A     L ++L  KG+ +  V+ S  +S +    +++ + +  AK   +
Sbjct: 66  IVPDIAILCTHASRNVSLFKQLAEKGVKQVIVLSSDMYSLDAQGEEIQAQCMTIAKSVNM 125

Query: 120 RIIGPNCAGIFGVHGKFFGSFE-VRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVS 178
           RI+GPN  G+     +F GSF  V    G +A +SQS A     L   N++ +GFSAF+S
Sbjct: 126 RILGPNSLGLILPWMQFNGSFSPVSALKGNIAFVSQSAAVCTTILDWANDKGIGFSAFIS 185

Query: 179 YGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSE 238
            GNA+D+D +D L   + D++T  I LY++ ++D R+F  A + A+  + +++LK G+++
Sbjct: 186 LGNASDIDFADLLDTLSTDKHTDAILLYVDTIRDARRFMSAARAASRNRRILVLKGGRTK 245

Query: 239 SGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAGSRVAVIT 297
           +G KAAQ HTG       IY +  ++   + V    ELF A +         G R+A+IT
Sbjct: 246 AGRKAAQMHTGGDDTLDIIYDSAIRRTGMLRVNNTHELFAAVETLTHSVPLRGERLAIIT 305

Query: 298 NSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTI 357
           N GGP ++A D L + G ++A+L +E   KL + LP   S  NP+D++ DAD+ RY  T+
Sbjct: 306 NGGGPAIMAVDALLERGGKLAQLEDEIYEKLNQSLPQSWSHSNPVDIVGDADHLRYVSTL 365

Query: 358 EVVCQDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKP------IIVNFMAGELVKKGV 411
            ++ + EN+D++L++  P     SE+ A+A++EA    P      I+ N+      K   
Sbjct: 366 NILLESENIDAILIMHSPSAIAHSEQTAQALVEAVQKHPRAKRFNILTNWSGELSAKPAR 425

Query: 412 ELLNAHGIKNFPTPERAAKA-LYWLSKRKNQ 441
            L N  GI  + TPE A  A ++ +  R+NQ
Sbjct: 426 TLFNQAGIPTYRTPESAVTAFMHLVEYRRNQ 456


>gi|11498537 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483066|pir||D69366 conserved hypothetical protein
           AF0932 - Archaeoglobus fulgidus
           >gi|2649664|gb|AAB90306.1| (AE001039) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 666
           
 Score =  243 bits (614), Expect = 3e-63
 Identities = 164/455 (36%), Positives = 249/455 (54%), Gaps = 24/455 (5%)

Query: 1   MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAG-RRFEIR 58
           + +FF  +SVA+ G S     +   ++R+++      +I P+NP     E+ G + +   
Sbjct: 219 ISFFFKARSVAVIGASTNPIKVGNSVVRSLMSNK-NLRIYPINPNAS--EILGLKAYPSV 275

Query: 59  KRLEEEVDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEV----GNVDLEEELIKA 113
           K L E  D++IV +PA+ V   +RE  +   KG V+IS+GF E     G V  EE L + 
Sbjct: 276 KSLPEVPDIAIVTVPAEFVLDAVREAAEAGVKGVVIISSGFKEAEVEEGKVR-EERLREI 334

Query: 114 AKEAGIRIIGPNCAGIFGVHGKFFGSFEV---RVNPGGLALISQSGAFGGAALAMGNEEN 170
           A++ GIRI+GPN  GI  V G    SF      V  G +AL+SQSG  G     +    +
Sbjct: 335 ARKYGIRIVGPNTFGIVSVVGGINASFTPMFSEVKKGRIALVSQSG--GICHYIIHKFRD 392

Query: 171 VGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVI 230
            GFS  +  GN  D+D  D +R+  +DENT V+A+Y+EG+ +GR  FE LK   S+K V+
Sbjct: 393 SGFSHILHLGNRCDVDFPDVMRFLREDENTDVVAVYVEGIDNGRGLFEELKRLCSEKKVV 452

Query: 231 ILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSAG 290
           ++K+G+S    KA+ SHTGS+AG Y ++ +  KQ  A+ VE   EL D A A E ++ +G
Sbjct: 453 VMKSGRSSVADKASVSHTGSMAGDYRVFASAMKQAGAVVVETPTELIDTAIAMEKFEVSG 512

Query: 291 SRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDL-IADAD 349
             VAV+T   G G++A D +E  G  +AR  EETV KL+  LPP     NP+DL  +  +
Sbjct: 513 G-VAVLTIQAGLGIVAADIIESSGGRLARFGEETVRKLKSLLPPITLRENPVDLSFSGLN 571

Query: 350 YERYRRTIEVVCQDENVD---SLLVICVPPIFIPSEEIARAIIEAKCNKPIIVNFMA-GE 405
            + +   I+ VC+D++V     L  +  P   +P+E I++  I  +  KP I+ + +  E
Sbjct: 572 LKVFAEVIDTVCRDDDVGLVMFLYAVAPPSWVLPAEVISQ--IMGRITKPSILGYSSTPE 629

Query: 406 LVKKGVELLNAHGIKNFPTPERAAKALYWLSKRKN 440
              +  E L       F + ERAAK    LS+++N
Sbjct: 630 NYAEIKEALKGSKTLIFDSVERAAKVAAILSEKRN 664


>gi|11499106 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483131|pir||F69438 conserved hypothetical protein
           AF1511 - Archaeoglobus fulgidus
           >gi|2649053|gb|AAB89736.1| (AE000998) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 881
           
 Score =  241 bits (608), Expect = 1e-62
 Identities = 153/449 (34%), Positives = 251/449 (55%), Gaps = 22/449 (4%)

Query: 1   MDYFFYPKSVAIFGSFRE-GAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
           + +FF P+SVA+ G+ R+   +      N++   F G   PVN     + +  R +    
Sbjct: 191 LKHFFNPESVAVIGASRDVEKVGGRTFYNLLTYRFNGVAYPVNRAAKAI-MGVRAYPTIS 249

Query: 60  RLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGN--VDLEEELIKAAK 115
            + +EV+++++ +P K    +  E   KG+ K  +V++AGF+EVG   V+ +++L++  +
Sbjct: 250 EVPDEVELAVLSVPVKYALEVAEECGKKGV-KALLVLTAGFAEVGGEGVERQKKLVEICR 308

Query: 116 EAGIRIIGPNCAGIFGV--HGKFFGSFE-VRVNPGGLALISQSGAFGGAALAMGNEENVG 172
           + G+R+IGPNC GI       +   +F     N G +A  SQSGA G A +   N   +G
Sbjct: 309 KYGMRLIGPNCMGIINTAPETRLLATFAPTPPNEGSIAFASQSGAVGLALMDRVNNYGLG 368

Query: 173 FSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIIL 232
            S FVS GN+AD+  +D + ++ +D  TK+I LY E + + RKF    K  + KKP++ +
Sbjct: 369 LSYFVSLGNSADITSNDLIEFWEEDGRTKLIMLYQESIPNPRKFARLAKRISKKKPILAI 428

Query: 233 KAGKSESGAKAAQSHTGSLAGSYEI-YKAVFKQGNAIEVEEMEELFDAAKAFEMYQ--SA 289
            +G + +GAKA  SHTG++  S  I   A+FKQ   I    ++ELF  ++ F ++Q    
Sbjct: 429 ASGVTPAGAKAVASHTGAIVSSSGIAIDALFKQTGIIRASSIDELFSISE-FLLHQPLPK 487

Query: 290 GSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADAD 349
           G+RV ++TN GG G + +D   ++GLEIA LSE T   LR  LP   S +NP+D+ A AD
Sbjct: 488 GNRVCIVTNGGGLGAITSDWCHQVGLEIAELSERTQESLRNLLPEIASVKNPVDMTASAD 547

Query: 350 YERYRRTIEVVCQDENVDSLLVICVPPIF-IPSEEIARAIIEA-----KCNKPIIVNFMA 403
              Y +T++ V +DENVD+++ I V  +    SEE+ +A+I A        KP++  +++
Sbjct: 548 VRMYGQTLKTVAEDENVDAIICIFVAAVSEEKSEEVEKAVISAAKYANSVGKPVVYIYIS 607

Query: 404 GELVKKGVELLNAHGIKNFPTPERAAKAL 432
            +  K GV + +   +  +  P  AAK L
Sbjct: 608 SD-SKDGV-IGDEVKVPVYVFPNTAAKVL 634


>gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacterium sp. NRC-1]
           Length = 542
           
 Score =  221 bits (557), Expect = 1e-56
 Identities = 115/284 (40%), Positives = 175/284 (61%), Gaps = 3/284 (1%)

Query: 152 ISQSGAFGGAALAMGNEENVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVK 211
           +SQSGAF  A L   N++ +GF    S GN A L E+DF++ +ADD +T VI  Y+EGV 
Sbjct: 1   MSQSGAFITAVLDWANDQGIGFKDIASLGNKAVLSETDFMQAWADDPDTNVILGYLEGVD 60

Query: 212 DGRKFFEALKYATSKKPVIILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVE 271
           DGR+F +  +  T   P +++K+G++E+GA+AA SHTG++AGS   Y+A FKQ   +  E
Sbjct: 61  DGREFIDDAREVTQDTPAVVVKSGRTEAGAQAASSHTGTIAGSEAAYEAGFKQAGVVRAE 120

Query: 272 EMEELFDAAKAFEMYQSAGSR-VAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLRE 330
            ++ELFD A+A +      S  VAVITN+GGPGV+ATD +    L +A   ++T+  L+ 
Sbjct: 121 NVQELFDFARALDGLPMPDSEDVAVITNAGGPGVMATDAVGDSRLSMASFEDDTIDALQG 180

Query: 331 FLPPQCSTRNPIDLIADADYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAI-- 388
            +P + +  NP+D+I DA+ +R+R  I+ V  DE+V   LV+  P   I   E++  I  
Sbjct: 181 SMPDEANVYNPVDVIGDAEIDRFRTAIDTVLADEHVGCALVLSAPTAVIDYTELSGVITA 240

Query: 389 IEAKCNKPIIVNFMAGELVKKGVELLNAHGIKNFPTPERAAKAL 432
           ++ K NKP++   M GE  ++  ++L   GI N+  P RA  +L
Sbjct: 241 LQEKHNKPVVTCLMGGERTEQATDVLGDAGIPNYFDPARAIGSL 284


>dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in UNG 3' region
           [Escherichia coli]
           Length = 612
           
 Score =  201 bits (507), Expect = 1e-50
 Identities = 138/447 (30%), Positives = 223/447 (49%), Gaps = 24/447 (5%)

Query: 7   PKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLEEEV 65
           PKS+A+ G S +       ++RN++ GGF G ++PV P    V       +I   L    
Sbjct: 12  PKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIAS-LPFTP 70

Query: 66  DVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIRIIG 123
           D++++   A     L+ EL  KG  K  +++SA  S+       E+L   A    +R++G
Sbjct: 71  DLAVLCTNASRNLALLEELGEKGC-KTCIILSAPASQ------HEDLRACALRHNMRLLG 123

Query: 124 PNCAGIFGVHGKFFGSFE-VRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYGNA 182
           PN  G+         SF  V +  G LA ISQS A     L    +  +GFS F++ G++
Sbjct: 124 PNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIALGDS 183

Query: 183 ADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESGAK 242
            D+D  + L Y A D  T  I LY+E + D R+F  A + A+  KP++++K+G+S     
Sbjct: 184 LDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRS----P 239

Query: 243 AAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAGSRVAVITNSGG 301
           AAQ    + AG    + A  ++   + V++  ELF A +    M    G R+ +I+N   
Sbjct: 240 AAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAA 299

Query: 302 PGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVVC 361
           P  LA D L     ++A LSEET  KLR+ LP   +  NP+DL  DA  E Y +T++++ 
Sbjct: 300 PAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILL 359

Query: 362 QDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKP------IIVNFMAGELVKKGVELLN 415
             ++ D+L+VI  P    P+ E A+ +IEA  + P      ++ N+      ++   L +
Sbjct: 360 HSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFS 419

Query: 416 AHGIKNFPTPERAAKA-LYWLSKRKNQ 441
             G+  + TPE    A ++ +  R+NQ
Sbjct: 420 EAGLPTYRTPEGTITAFMHMVEYRRNQ 446


>sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA INTERGENIC REGION
           >gi|7466397|pir||G65036 hypothetical protein b2584 -
           Escherichia coli (strain K-12)
           >gi|1788938|gb|AAC75637.1| (AE000344) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 886
           
 Score =  201 bits (507), Expect = 1e-50
 Identities = 138/447 (30%), Positives = 223/447 (49%), Gaps = 24/447 (5%)

Query: 7   PKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLEEEV 65
           PKS+A+ G S +       ++RN++ GGF G ++PV P    V       +I   L    
Sbjct: 12  PKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAVLGVLAWPDIAS-LPFTP 70

Query: 66  DVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAAKEAGIRIIG 123
           D++++   A     L+ EL  KG  K  +++SA  S+       E+L   A    +R++G
Sbjct: 71  DLAVLCTNASRNLALLEELGEKGC-KTCIILSAPASQ------HEDLRACALRHNMRLLG 123

Query: 124 PNCAGIFGVHGKFFGSFE-VRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSYGNA 182
           PN  G+         SF  V +  G LA ISQS A     L    +  +GFS F++ G++
Sbjct: 124 PNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMGFSYFIALGDS 183

Query: 183 ADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVIILKAGKSESGAK 242
            D+D  + L Y A D  T  I LY+E + D R+F  A + A+  KP++++K+G+S     
Sbjct: 184 LDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVIKSGRS----P 239

Query: 243 AAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAGSRVAVITNSGG 301
           AAQ    + AG    + A  ++   + V++  ELF A +    M    G R+ +I+N   
Sbjct: 240 AAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGDRLMIISNGAA 299

Query: 302 PGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADYERYRRTIEVVC 361
           P  LA D L     ++A LSEET  KLR+ LP   +  NP+DL  DA  E Y +T++++ 
Sbjct: 300 PAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSEHYIKTLDILL 359

Query: 362 QDENVDSLLVICVPPIFIPSEEIARAIIEAKCNKP------IIVNFMAGELVKKGVELLN 415
             ++ D+L+VI  P    P+ E A+ +IEA  + P      ++ N+      ++   L +
Sbjct: 360 HSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEHSSQEARRLFS 419

Query: 416 AHGIKNFPTPERAAKA-LYWLSKRKNQ 441
             G+  + TPE    A ++ +  R+NQ
Sbjct: 420 EAGLPTYRTPEGTITAFMHMVEYRRNQ 446


>emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
           Length = 711
           
 Score =  173 bits (433), Expect = 5e-42
 Identities = 115/355 (32%), Positives = 187/355 (52%), Gaps = 17/355 (4%)

Query: 7   PKSVAIFGSFREG-AIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGR-RFEIRKRLEEE 64
           P+SVA+ G+  +   I    +  ++  GF G+I+PVNP     E+ G   +     L E 
Sbjct: 20  PRSVAVVGASSDPHRIGGRPIAYMLRNGFTGRILPVNPN--RTEIQGLPAYASVDALPEA 77

Query: 65  VDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGN--VDLEEELIKAAKEAGIR 120
            DV+I+ +PA  V   ++ L  KG  + A+V S+GFSEVG   V +++ +++AA+ A +R
Sbjct: 78  PDVAIIAVPAPQVLETVQVLGRKG-ARSAIVFSSGFSEVGEEGVAMQDAIVEAARAANMR 136

Query: 121 IIGPNCAGIFGVHGKFFGSFEVRVN-----PGGLALISQSGAFGGAALAMGNEENVGFSA 175
           ++GPN  G+F  +  ++  F   +       G + + +QSGA+G   L +  +  +G   
Sbjct: 137 LLGPNALGVFNANLGYYAFFSTSLERGIPLAGRVGIATQSGAYGAHLLGLSRQRGLGTPI 196

Query: 176 FVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYA-TSKKPVIILKA 234
            V+ GN AD+   D + +  +     V+  Y E +++   F  AL+ A  + KPVI+ K 
Sbjct: 197 CVATGNEADVTLGDAIGWLVESPEVDVVMAYAESIRNVDSFLAALEAAHRAGKPVILHKV 256

Query: 235 GKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAA-KAFEMYQSAGSRV 293
           G+SE G +AA SHT SLAG  ++  AV      +     EEL D A  A +      + +
Sbjct: 257 GRSELGGRAAMSHTASLAGDDKVLDAVLADYAVVRARTTEELVDIAYLATQRIIPVNNSL 316

Query: 294 AVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADA 348
            +IT SGG G++ +D  E +GL +  + EE  A+L++ L    S  NP+D  A A
Sbjct: 317 GMITVSGGAGIIVSDAAEDVGLPMPPMPEEAQARLKQRL-HYASPLNPVDCTAQA 370


>pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9946928|gb|AAG04406.1|AE004534_4
           (AE004534) pimeloyl-CoA synthetase [Pseudomonas
           aeruginosa]
           Length = 715
           
 Score =  169 bits (424), Expect = 5e-41
 Identities = 138/447 (30%), Positives = 213/447 (46%), Gaps = 29/447 (6%)

Query: 7   PKSVAIFGSFREGA-IAREILRNIVEGGFEGKIIPVNPKGGTVEVAGR-RFEIRKRLEEE 64
           P+SVA+ G+  +   I    +  ++  G+ G+I+PVNP     E+ G   F     L + 
Sbjct: 24  PRSVAVIGASSDPTRIGGRPIAYMLRHGYAGQILPVNPN--RAEIQGLPAFASVAELPQA 81

Query: 65  VDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVGNVD--LEEELIKAAKEAGIRI 121
            DV+IV +PA  V   +R L +   + A+V S+GFSEVG     +++ ++ AA+E G+R+
Sbjct: 82  PDVAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVAAAREHGMRL 141

Query: 122 IGPNCAGIFGVHGKFFGSFEVRVN-----PGGLALISQSGAFGGAALAMGNEENVGFSAF 176
           +GPN  G F  +  ++  F   +      PG + + +QSGA+G   L M  +  +G    
Sbjct: 142 LGPNALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMARQRRLGTPIC 201

Query: 177 VSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYA-TSKKPVIILKAG 235
           V+ GN AD+   D + +  +     V+  Y E +++   F  AL+ A  + KPVI+ K G
Sbjct: 202 VATGNEADVTLGDSIGWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAGKPVILHKVG 261

Query: 236 KSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAA-KAFEMYQSAGSRVA 294
           +S  G++AA SHT SLAG  ++  AV      I     EEL D A  A       G+ + 
Sbjct: 262 RSALGSRAALSHTASLAGDDKVLDAVLGDYAVIRARTTEELMDIAYLATRRIYPVGNSLG 321

Query: 295 VITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADA--DYER 352
           +IT SGG G++ +D  E++GL +  + +    +L+  L    S  NP+D  A A  D   
Sbjct: 322 MITVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKARL-SFASPINPVDCTAQALNDLTL 380

Query: 353 YRRTIEVVCQDENVDSLLVI-----CVPPIFIPSEEIARAIIEAKCNKPIIVNFMAGELV 407
            R   E +  D    SLL           I     E  R I EA   +  +V+ M     
Sbjct: 381 VRDFTESMVVDGGYRSLLAFFTQAGTAASIGARLAEQFRRIKEAHPERLFVVSVMG---- 436

Query: 408 KKGVEL--LNAHGIKNFPTPERAAKAL 432
            +G EL      G   F  P RA  A+
Sbjct: 437 -EGEELAPYEEAGFALFEDPTRAVVAI 462


>pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelicolor
           >gi|2661695|emb|CAA15799.1| (AL009204) hypothetical
           protein SC9B10.09 [Streptomyces coelicolor A3(2)]
           Length = 1039
           
 Score =  136 bits (339), Expect = 5e-31
 Identities = 121/423 (28%), Positives = 193/423 (45%), Gaps = 59/423 (13%)

Query: 7   PKSVAIFGSFRE-GAIAREILRNIVEGGFEGKIIPVN---PKGGTVEVAGRRFEIRKRLE 62
           P SVA+ G+ R  G + R IL NI + G+ G++  VN   P+                ++
Sbjct: 212 PGSVAVVGAGRTPGGVGRSILGNIRDAGYTGRLYAVNRAFPEDMKELDGVPACRSVGDID 271

Query: 63  EEVDVSIVVIPAKLVPGLIREL-KGLTKGAVVISAGFSEVGNVDLEEE--LIKAAKEAGI 119
             VD+++V +PA+ VP ++    +   +G VVISAG+++ G    E +  L++ A+  G+
Sbjct: 272 GPVDLAVVTVPAEHVPDVVTACGEHGVQGLVVISAGYADSGPEGRERQRALVRHARTYGM 331

Query: 120 RIIGPNCAGIFGVHGKFFGSFEVRVNP---------GGLALISQSGAFGGAALAMGNEEN 170
           RIIGPN  GI         S +VR+N          G + L +QSGA G A L+  +   
Sbjct: 332 RIIGPNAFGIINT------SPDVRLNASLAPEMPRAGRIGLFAQSGAIGIALLSRLHRRG 385

Query: 171 ------VGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYAT 224
                  G S FVS GN AD+  +D L+Y+ DD  T V  +Y+E + + RKF    +   
Sbjct: 386 GGVTGVTGVSTFVSSGNRADVSGNDVLQYWYDDPQTDVALMYLESIGNPRKFTRLARRTA 445

Query: 225 SKKPVIILKAGKSESGAKAAQSH-TGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF 283
           + KP+++++  +   G  A Q H   +    +    A+ +Q   I V+ + +L DA    
Sbjct: 446 AAKPLVVVQGAR--HGGVAPQGHAVRATRLPHATVSALLRQAGVIRVDTITDLVDAGLLL 503

Query: 284 EMYQ-SAGSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPI 342
                 AG RVA++ NS   G+L  D                 A L E L PQ     P+
Sbjct: 504 ARQPLPAGPRVAILGNSESLGLLTYD-----------------ACLSEGLRPQ----PPL 542

Query: 343 DLIADADYERYRRTIEVVCQDENVDSLLVICVPPI------FIPSEEIARAIIEAKCNKP 396
           DL   A  + +   +     D+  D+++V  +P +           E  R+   A   KP
Sbjct: 543 DLTTAASADDFHAALARALADDTCDAVVVTAIPTLGEGAAGDAALAEALRSAAAAVPTKP 602

Query: 397 IIV 399
           ++V
Sbjct: 603 VLV 605


>pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9951261|gb|AAG08363.1|AE004910_10
           (AE004910) hypothetical protein [Pseudomonas aeruginosa]
           Length = 696
           
 Score =  107 bits (264), Expect = 3e-22
 Identities = 102/346 (29%), Positives = 158/346 (45%), Gaps = 19/346 (5%)

Query: 7   PKSVAIFGSFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRKRLEEEVD 66
           P+ +A  G    G      L+   EGGF G++  VNP+   +E       +   L    D
Sbjct: 12  PRHLAFIG----GRGMARALKRCAEGGFAGQLWLVNPQHAELEGVPCVASVAD-LPCGPD 66

Query: 67  VSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDL--EEELIKAAKEAGIRII 122
            + V    +L    +  L  KG   GA+  ++GF+E G   L  +  L+ AA E  + ++
Sbjct: 67  AAFVATNRELTLDAVAALAAKG-AGGAICYASGFAETGEQGLAVQRRLLAAAGE--MALL 123

Query: 123 GPNCAGIFG-VHGKFFG--SFEVRVNPGGLALISQSGAFGGAALAMGNEENVGFSAFVSY 179
           GPNC G+   +HG      +   R    G+A+++QSG F    L+M ++ ++  +   S 
Sbjct: 124 GPNCYGLLDYLHGAALWPVAHGGRQVERGVAVLTQSGNFA-YNLSM-SDRSLPVAYMASV 181

Query: 180 GNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKK-PVIILKAGKSE 238
           GN A L  ++ +    D+     I L++EG+K+   F  A   A  K  PVI LK G S+
Sbjct: 182 GNQAQLGIAELMDVLLDEPRVTAIGLHLEGLKNVPGFARAAYKALQKGVPVIALKTGVSK 241

Query: 239 SGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEM-YQSAGSRVAVIT 297
            GA  A SHT SLAGS  +Y ++F++   I V       +  KA    +   G  +  + 
Sbjct: 242 IGAALALSHTSSLAGSDALYDSLFERLGVIRVSGPVSFVETLKAAACGHLPGGPSLVALA 301

Query: 298 NSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPID 343
            SGG   L  D  E+ GL +         +L   LP   +  NP+D
Sbjct: 302 CSGGDAGLIADYAERNGLGLPSFDAGQRDELAGVLPDYANIANPLD 347


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161282419
Number of Sequences: 2977
Number of extensions: 6818012
Number of successful extensions: 18939
Number of sequences better than 1.0e-10: 30
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18767
Number of HSP's gapped (non-prelim): 35
length of query: 442
length of database: 189,106,746
effective HSP length: 58
effective length of query: 384
effective length of database: 154,394,500
effective search space: 59287488000
effective search space used: 59287488000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)