BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1433 (PAB1433) DE:Hypothetical protein
         (250 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75054 hypothetical protein PAB1433 - Pyrococcus abyssi (st...   494  e-139
pir||B71107 hypothetical protein PH0627 - Pyrococcus horikoshii ...   422  e-117
gi|11499366 conserved hypothetical protein [Archaeoglobus fulgid...   246  2e-64
pir||C75560 conserved hypothetical protein - Deinococcus radiodu...   201  7e-51
gb|AAG19990.1| (AE005081) Vng1766c [Halobacterium sp. NRC-1]          191  6e-48
pir||G71257 conserved hypothetical protein TP0977 - syphilis spi...   164  1e-39
sp|Q57354|YBGI_HAEIN HYPOTHETICAL PROTEIN HI0105 >gi|1074261|pir...   155  3e-37
pir||A83089 conserved hypothetical protein PA4445 [imported] - P...   146  3e-34
sp|P75743|YBGI_ECOLI HYPOTHETICAL 26.9 KDA PROTEIN IN PHRB-NEI I...   146  3e-34
dbj|BAB13010.1| (AP001118) hypothetical protein [Buchnera sp. APS]    139  4e-32
pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria ...   138  8e-32
pir||G81011 conserved hypothetical protein NMB2054 [imported] - ...   136  3e-31
pir||F72114 conserved hypothetical protein CP0635 [imported] - C...   134  1e-30
pir||B81709 conserved hypothetical protein TC0384 [imported] - C...   132  3e-30
pir||C82119 conserved hypothetical protein VC2093 [imported] - V...   128  6e-29
pir||C71557 probable ACR - Chlamydia trachomatis (serotype D, st...   125  4e-28
pir||C70158 conserved hypothetical protein BB0468 - Lyme disease...   119  4e-26
sp|Q58337|Y927_METJA HYPOTHETICAL PROTEIN MJ0927 >gi|2128040|pir...   100  3e-20
gb|AAA23326.1| (L01112) ORF7 [Allochromatium vinosum]                  87  1e-16
sp|P45371|YPH7_CHRVI HYPOTHETICAL PROTEIN IN PHBB 3'REGION (ORF7...    87  1e-16

>pir||D75054 hypothetical protein PAB1433 - Pyrococcus abyssi (strain Orsay)
           >gi|5458842|emb|CAB50329.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 250
           
 Score =  494 bits (1258), Expect = e-139
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML
Sbjct: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60

Query: 61  IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
           IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL
Sbjct: 61  IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120

Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
           EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG
Sbjct: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180

Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
           FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK
Sbjct: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240

Query: 241 TIFIDSPTGL 250
           TIFIDSPTGL
Sbjct: 241 TIFIDSPTGL 250


>pir||B71107 hypothetical protein PH0627 - Pyrococcus horikoshii
           >gi|3257033|dbj|BAA29716.1| (AP000003) 250aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 250
           
 Score =  422 bits (1074), Expect = e-117
 Identities = 204/250 (81%), Positives = 228/250 (90%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           M+R+EIVSFLDE+L+IS+YPDKS NGLQVEGKEEV  IAFAVDA LDTI KA+ FNADML
Sbjct: 1   MDRDEIVSFLDEFLNISAYPDKSKNGLQVEGKEEVNTIAFAVDASLDTILKAKVFNADML 60

Query: 61  IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
           IVHHGIIWGG+SYV+GL AKRLK LL + +NLY  H+PLD HPEVGNNVQLLKLLNLE  
Sbjct: 61  IVHHGIIWGGISYVRGLIAKRLKELLVAGINLYAVHLPLDAHPEVGNNVQLLKLLNLEAK 120

Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
           EPFGEY G+KIGYIGEF+EPKPLP+IAQILAEKLP +YV+SYEFGLQE+KR+AVVSG GG
Sbjct: 121 EPFGEYHGVKIGYIGEFDEPKPLPLIAQILAEKLPAEYVKSYEFGLQEVKRIAVVSGGGG 180

Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
           FAIEEAS KADLLITGEI+H DYR AEDLRVSVIAAGHYATETLGVKALM +++EKFGVK
Sbjct: 181 FAIEEASRKADLLITGEITHEDYRVAEDLRVSVIAAGHYATETLGVKALMGVLKEKFGVK 240

Query: 241 TIFIDSPTGL 250
           T+FID+PTGL
Sbjct: 241 TVFIDNPTGL 250


>gi|11499366 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7451201|pir||H69471 conserved hypothetical protein
           AF1777 - Archaeoglobus fulgidus
           >gi|2648773|gb|AAB89474.1| (AE000980) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 245
           
 Score =  246 bits (622), Expect = 2e-64
 Identities = 118/251 (47%), Positives = 173/251 (68%), Gaps = 7/251 (2%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           M   E+V FLD++L I+SY D S+NGLQVEG EEV+++AFAVDA +++   A+A NADML
Sbjct: 1   MNLAEVVRFLDDFLEINSYQDVSNNGLQVEGSEEVKKVAFAVDASMESFRAAKAVNADML 60

Query: 61  IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
           +VHHG+IWGG+ Y++G+  +R++ LL S ++LY AH+PLD H EVGNN  +L+ +  EP 
Sbjct: 61  VVHHGLIWGGIGYIRGIVKRRIEFLLRSNLSLYAAHLPLDAHREVGNNAVILRKIGAEPQ 120

Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
           E FGEYKG+KIG+  + E+   +  IA+ L   + +       FG + +++VA VSG G 
Sbjct: 121 EEFGEYKGVKIGFSAKLEKATAVGEIAEKLGPAMVL------PFGEERVRKVAAVSGKGC 174

Query: 181 FAIEEASEK-ADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGV 239
           FA+ EA +   +L ITGE  H  Y  A++  ++V   GHY +E  GV++LM++VREK G+
Sbjct: 175 FALNEAIDAGVELFITGEPEHEAYHLAKEGGINVFFLGHYESEKFGVQSLMEVVREKLGI 234

Query: 240 KTIFIDSPTGL 250
           + +F+D PT L
Sbjct: 235 EAVFLDIPTNL 245


>pir||C75560 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6457771|gb|AAF09697.1|AE001873_7 (AE001873)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 272
           
 Score =  201 bits (506), Expect = 7e-51
 Identities = 105/249 (42%), Positives = 152/249 (60%), Gaps = 2/249 (0%)

Query: 3   REEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIV 62
           R+E+V +L EYL I +YPD S NGLQ++G +++ RIA +VD  L T+  A    AD+L+V
Sbjct: 25  RDELVRWLGEYLRIGAYPDPSLNGLQIQGTDKIRRIAASVDTSLQTLQAAAESGADLLLV 84

Query: 63  HHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEP 122
           HHG+ WG    + G   +R++  + +++NLY AHIPLD HPEVGNN  + + L+L  L+P
Sbjct: 85  HHGLFWGRPLAITGPHYERVRTAIQADLNLYAAHIPLDAHPEVGNNAMIARALSLTDLQP 144

Query: 123 FGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGGFA 182
           FG+++G KIG  G       L   A  + +KL  +    +  G   I RV V SG+G  A
Sbjct: 145 FGDWQGHKIGVAGTLPRELGLQDFADRI-QKLTGEICLVHGGGSPNIHRVGVTSGSGAGA 203

Query: 183 IEEASEKA-DLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
           I EA+    D L+TGE  H  +  + +  V+VI AGHY TE  GV+AL   + ++FG+  
Sbjct: 204 IAEAAAMGLDTLLTGEPEHKYFHDSFEYGVNVIFAGHYETEVFGVRALAARIEDEFGIPW 263

Query: 242 IFIDSPTGL 250
            F++ PTGL
Sbjct: 264 QFLNFPTGL 272


>gb|AAG19990.1| (AE005081) Vng1766c [Halobacterium sp. NRC-1]
           Length = 253
           
 Score =  191 bits (481), Expect = 6e-48
 Identities = 110/254 (43%), Positives = 153/254 (59%), Gaps = 5/254 (1%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
           M+  ++ S  ++ L ++ Y D ++NGLQV  G   VERIAFAVDA   TI+ A  + AD+
Sbjct: 1   MDVSDVTSRYNDRLRVTDYADAATNGLQVGPGDRSVERIAFAVDAAAATISDAVEWGADL 60

Query: 60  LIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
           L+VHHG+ WGG+  V G    R+ AL+  E  LY AH+PLD HPE+GN   +  +L L  
Sbjct: 61  LVVHHGVAWGGLDAVTGREYDRIAALVDGECALYAAHLPLDGHPELGNAAHVADVLGLTQ 120

Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPV--DYVRSYEFGLQEIKRVAVVSG 177
             PFG++ G +IG  G+  +P   P +++ LA  LP     V+  + G  E+  VAVV+G
Sbjct: 121 RSPFGDHSGEQIGLQGQLPDPTSAPALSKSLAAALPTGDQPVQVLDVGPAELTDVAVVTG 180

Query: 178 AGGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREK 236
           +G   + EA +   D L+TGE     Y  A +  VSV  AGHYATET GV+AL + V + 
Sbjct: 181 SGADWLREAEANGVDALVTGEGKGKLYHEAREAGVSVFLAGHYATETGGVRAL-EAVADD 239

Query: 237 FGVKTIFIDSPTGL 250
           +GV+T FI  PTGL
Sbjct: 240 WGVETRFISHPTGL 253


>pir||G71257 conserved hypothetical protein TP0977 - syphilis spirochete
           >gi|3323299|gb|AAC65932.1| (AE001265) conserved
           hypothetical protein [Treponema pallidum]
           Length = 286
           
 Score =  164 bits (410), Expect = 1e-39
 Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 36/286 (12%)

Query: 1   MEREEIVSFLDEYLSISSYP--DKSSNGLQVEGK-EEVERIAFAVDACLDTIAKARAFNA 57
           M   E+ ++   +L+   +   D + NGLQV      V ++AFAVDAC  +I  A    A
Sbjct: 1   MTARELDAYFRSFLNFGPFVSCDVALNGLQVANSGAPVHKVAFAVDACAQSIDAAARAGA 60

Query: 58  DMLIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNL 117
            ML VHHG+ WG +  + G+  +R++ALL+ ++ LY  H+PLD HP+ GNN  L   + L
Sbjct: 61  RMLFVHHGLFWGRIEPLTGMQYRRVQALLTHDIALYAVHLPLDAHPQYGNNAGLAARVGL 120

Query: 118 EPLEPFGEYKGIKIGYIGEFEE------------------------------PKPLPMIA 147
               PFG  +G  +G  G   E                              P     + 
Sbjct: 121 RQGGPFGFIRGTAVGLWGTVAENTTPSQEAMQQHAACTAPDTHRVTHANAISPSAGLSLQ 180

Query: 148 QILAEKLPVDY--VRSYEFGLQEIKRVAVVSG-AGGFAIEEASEKADLLITGEISHADYR 204
           Q++    P +   VR   FG Q I+RV ++SG AG +  E  +   DL ITGEI H+ Y 
Sbjct: 181 QVVHRLFPAEEQPVRLLPFGKQRIERVGILSGKAGTYLAEAIALDLDLFITGEIEHSCYH 240

Query: 205 TAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKTIFIDSPTGL 250
           TA +  +SVIA GHY TET+G++ + + ++   G++T+F+D PTG+
Sbjct: 241 TAREHSISVIAGGHYQTETVGLQLVARKLQRDTGIETLFLDIPTGM 286


>sp|Q57354|YBGI_HAEIN HYPOTHETICAL PROTEIN HI0105 >gi|1074261|pir||G64142 conserved
           hypothetical protein HI0105 - Haemophilus influenzae
           >gi|1573058|gb|AAC21783.1| (U32696) conserved
           hypothetical protein [Haemophilus influenzae Rd]
           Length = 279
           
 Score =  155 bits (389), Expect = 3e-37
 Identities = 94/251 (37%), Positives = 145/251 (57%), Gaps = 5/251 (1%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           M   E+   +++ LS     D + NGLQVEGK E+++I   V A    I  A + NAD +
Sbjct: 29  MNNLELEQLINQKLSSDKINDYAPNGLQVEGKTEIKKIITGVTASQALINYAISQNADAI 88

Query: 61  IVHHGIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
           +VHHG  W   +  ++G+  KR+KALL +++NLY  H+PLDVHPE+GNN QL KLL++E 
Sbjct: 89  LVHHGYFWKSETPCIRGMKGKRIKALLVNDINLYGYHLPLDVHPELGNNAQLAKLLDIEN 148

Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAG 179
           L+P  E   + I   GE +EP      A+ + + L    +   E G   I+++ + +G G
Sbjct: 149 LQPL-EKGSVSIPVWGELKEPMTGKDFAEKIEKVLNRKPLICIENGPHLIRKIGICTGGG 207

Query: 180 GFAIEEASEK-ADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFG 238
              I+ A+E+  D  ITGE+S     +A +  +   +AGH+ATE  G+KAL + + +++G
Sbjct: 208 QGYIDLAAEQGCDAFITGEVSEQTIHSAREQGLYFFSAGHHATERYGIKALGEWLAKEYG 267

Query: 239 VKTIF--IDSP 247
               F  ID+P
Sbjct: 268 FDVEFKDIDNP 278


>pir||A83089 conserved hypothetical protein PA4445 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9950680|gb|AAG07833.1|AE004859_2 (AE004859)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 252
           
 Score =  146 bits (364), Expect = 3e-34
 Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 30/257 (11%)

Query: 6   IVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHHG 65
           +V   D YL  +   D   NGLQVEG+ +V RI   V A    +  A   +AD+++VHHG
Sbjct: 8   LVEEADRYLDAARIQDYCPNGLQVEGRPQVRRIVSGVTASQALLDAAVEADADVVLVHHG 67

Query: 66  IIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE---PLE 121
             W G +  V G+  +RLK LL+++++L   H+PLD+HPEVGNNVQL + L  E   PLE
Sbjct: 68  YFWKGENPCVVGMKQRRLKTLLNNDISLLAYHLPLDLHPEVGNNVQLARQLGFEVEGPLE 127

Query: 122 PFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGL----------QEIKR 171
           P                 P+ + ++  +     P D+ R     L          Q I+R
Sbjct: 128 P---------------GNPRSIVLLGSLAEPMQPADFARHVRDALGREPLLVDAGQPIRR 172

Query: 172 VA-VVSGAGGFAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALM 230
           +A    GA G+  +  +   D  +TGE+S     +A +  +S IAAGH+ATE  GV+AL 
Sbjct: 173 IAWCTGGAQGYIDQAIAAGVDAYLTGEVSEQTVHSARENGISFIAAGHHATERYGVQALG 232

Query: 231 KLVREKFGVKTIFIDSP 247
             + ++F ++ +FID P
Sbjct: 233 DYLGKRFAIEHLFIDCP 249


>sp|P75743|YBGI_ECOLI HYPOTHETICAL 26.9 KDA PROTEIN IN PHRB-NEI INTERGENIC REGION
           >gi|7451205|pir||E64806 ybgI protein - Escherichia coli
           >gi|1786928|gb|AAC73804.1| (AE000174) orf, hypothetical
           protein [Escherichia coli K12]
           >gi|4062306|dbj|BAA35374.1| (D90710) Hypothetical
           protein HI0105 [Escherichia coli]
           Length = 247
           
 Score =  146 bits (364), Expect = 3e-34
 Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 19/255 (7%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           M+  E+   ++E L+ ++  D + NGLQVEGKE V++I   V A    + +A    AD +
Sbjct: 1   MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAV 60

Query: 61  IVHHGIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLL---- 115
           IVHHG  W G S  ++G+   RLK LL++++NLY  H+PLD HPE+GNN QL  LL    
Sbjct: 61  IVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV 120

Query: 116 --NLEPLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVA 173
              +EPL P+           GE   P P   +A  +  +L    +   + G + ++RVA
Sbjct: 121 MGEIEPLVPW-----------GELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVA 169

Query: 174 VVSGAGGFAIEEASE-KADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKL 232
             +G G   I+ A+    D  ITGE+S     +A +  +   AAGH+ATE  G++AL + 
Sbjct: 170 WCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEW 229

Query: 233 VREKFGVKTIFIDSP 247
           + E   +   FID P
Sbjct: 230 LNENTDLDVTFIDIP 244


>dbj|BAB13010.1| (AP001118) hypothetical protein [Buchnera sp. APS]
           Length = 247
           
 Score =  139 bits (346), Expect = 4e-32
 Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 19/244 (7%)

Query: 10  LDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHHGIIWG 69
           +++ L  + Y D   NGLQ+EG E V++I   V AC   + KA  +NAD LIVHHG  W 
Sbjct: 10  INKKLLSNQYQDTVPNGLQIEGTEIVKKIITGVTACQALLDKALFYNADTLIVHHGYFWK 69

Query: 70  GVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE------PLEP 122
             S Y+  +  +RLK +LS  +NLY  H+PLDVHP++GNN Q+ K LN++      P   
Sbjct: 70  NESKYIHNMQRQRLKTILSHNINLYSWHLPLDVHPKLGNNAQIAKKLNIDIQGSILPYVL 129

Query: 123 FGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAG-GF 181
           +G  K    G+  EF         A  +  K     +  YE     I RVA  SG G GF
Sbjct: 130 WGTTKNKMTGF--EF---------ANKIERKFKKYPIHLYENAPLYISRVAWCSGRGQGF 178

Query: 182 AIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
             +  +   D  +TGEIS      A++L +   + GH+ATE  GVK+L + ++ K+ +  
Sbjct: 179 IKKACAFGIDAFLTGEISEETTHIAKELGIHFFSLGHHATEKDGVKSLGEWLQRKYDLCV 238

Query: 242 IFID 245
            FID
Sbjct: 239 DFID 242


>pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7379135|emb|CAB83683.1|
           (AL162753) hypothetical protein NMA0382 [Neisseria
           meningitidis Z2491]
           Length = 249
           
 Score =  138 bits (343), Expect = 8e-32
 Identities = 87/245 (35%), Positives = 131/245 (52%), Gaps = 6/245 (2%)

Query: 3   REEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIV 62
           R + +++ +E L  + + D + NGLQVEG+E + +I  +V A    I  A    AD+L+V
Sbjct: 4   RRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVTASRAAIDFAVEQKADLLLV 63

Query: 63  HHGIIWGG-VSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLE 121
           HHG+ W   +  V G   +R+ ALL  ++N+   H+PLD HP +GNN QL   L     +
Sbjct: 64  HHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRLGFATEK 123

Query: 122 PFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG-AGG 180
            FGE   +  G + + +    L    + + ++ PV   +      +EI+RVA  SG A G
Sbjct: 124 RFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVIGKPE----REIRRVAWCSGGAQG 179

Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
           F      E  DL +TGEIS A Y  A +   + I+AGH+ATE  GV+AL +   E FG++
Sbjct: 180 FFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHHATERYGVRALAESAAEVFGLE 239

Query: 241 TIFID 245
               D
Sbjct: 240 VCHFD 244


>pir||G81011 conserved hypothetical protein NMB2054 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7227316|gb|AAF42374.1| (AE002555) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 249
           
 Score =  136 bits (338), Expect = 3e-31
 Identities = 87/243 (35%), Positives = 132/243 (53%), Gaps = 6/243 (2%)

Query: 5   EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
           + +++ +E L  + + D + NGLQVEG+E + +I  +V A    I  A    AD+L+VHH
Sbjct: 6   DFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVTASRAAIDFAVEQKADLLLVHH 65

Query: 65  GIIWGG-VSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
           G+ W   +  V G   +R+ ALL  ++N+   H+PLD HP +GNN QL   L     + F
Sbjct: 66  GMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRLGFATEKRF 125

Query: 124 GEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG-AGGFA 182
           GE   +  G + + +    L    + + ++ PV  + + E   +EI+RVA  SG A GF 
Sbjct: 126 GEQNLLNSGSLKQAKTLGALAAHIETVLQRKPV-VIGNPE---REIRRVAWCSGGAQGFF 181

Query: 183 IEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKTI 242
                E  DL +TGEIS A Y  A +   + I+AGH+ATE  GV+AL +   E FG++  
Sbjct: 182 QTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHHATERYGVRALAESAAEVFGLEVC 241

Query: 243 FID 245
             D
Sbjct: 242 HFD 244


>pir||F72114 conserved hypothetical protein CP0635 [imported] - Chlamydophila
           pneumoniae (strains CWL029 and AR39)
           >gi|4376402|gb|AAD18290.1| (AE001600) ACR family
           [Chlamydophila pneumoniae CWL029]
           >gi|7189549|gb|AAF38450.1| (AE002221) conserved
           hypothetical protein [Chlamydophila pneumoniae AR39]
           >gi|8978510|dbj|BAA98347.1| (AP002545) ACR family
           [Chlamydophila pneumoniae J138]
           Length = 251
           
 Score =  134 bits (333), Expect = 1e-30
 Identities = 85/252 (33%), Positives = 135/252 (52%), Gaps = 11/252 (4%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
           M   +++S L+  LS   + D   NGLQV + +  V++IA AV A L+TI +A A  A++
Sbjct: 1   MNVADLLSHLETLLSSKIFQDYGPNGLQVGDPQTPVKKIAVAVTADLETIKQAVAAEANV 60

Query: 60  LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
           LIVHHGI W G+ Y + G+  KR++ L+   + L   H+PLD HP +GNN ++   LN  
Sbjct: 61  LIVHHGIFWKGMPYPITGMIHKRIQLLIEHNIQLIAYHLPLDAHPTLGNNWRVALDLNWH 120

Query: 119 PLEPFGE---YKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVV 175
            L+PFG    Y G++    G F  P  +     +L++        S   G   +   A++
Sbjct: 121 DLKPFGSSLPYLGVQ----GSF-SPIDIDSFIDLLSQYYQAPLKGSALGGPSRVSSAALI 175

Query: 176 SGAGGFAIEE-ASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVR 234
           SG     +   A+ + D  ITG      + TA +  ++ +A GH ATE +G K+L + ++
Sbjct: 176 SGGAYRELSSAATSQVDCFITGNFDEPAWSTALESNINFLAFGHTATEKVGPKSLAEHLK 235

Query: 235 EKFGVKTIFIDS 246
            +F + T FID+
Sbjct: 236 SEFPISTTFIDT 247


>pir||B81709 conserved hypothetical protein TC0384 [imported] - Chlamydia
           muridarum (strain Nigg) >gi|7190424|gb|AAF39241.1|
           (AE002305) conserved hypothetical protein [Chlamydia
           muridarum]
           Length = 251
           
 Score =  132 bits (330), Expect = 3e-30
 Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 5/249 (2%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
           M   +++  L+E L    + D   NGLQV + +  V +IA AV A L TI KA A  +++
Sbjct: 1   MNVADLLHVLNELLYPELFNDYGPNGLQVGDAQAPVRKIAVAVTADLATIEKAIACESNV 60

Query: 60  LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
           L+VHHG+ W G+ Y + G+  +R++ L+ + + L   H+PLD HPEVGNN ++ K L  E
Sbjct: 61  LLVHHGLFWKGMPYPITGMLYQRMQRLIENNIQLIAYHLPLDAHPEVGNNWKVAKDLGWE 120

Query: 119 PLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGA 178
            LE FG  K   +G  G F E      ++Q L+       +     G + I   A++SG 
Sbjct: 121 RLESFGSTKP-SLGVKGVFPEIGIHDFVSQ-LSSYYQAPVLAKALGGKESISSAALISGG 178

Query: 179 GGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKF 237
               I EA S++ D  ITG      +  A +L ++ +A GH ATE +G KAL + +++  
Sbjct: 179 AYKEISEAKSQEVDCFITGNFDEPAWSLAHELAINFLAFGHTATEKVGPKALTQYLKQVG 238

Query: 238 GVKTIFIDS 246
               +F+D+
Sbjct: 239 CDSVVFLDT 247


>pir||C82119 conserved hypothetical protein VC2093 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9656642|gb|AAF95239.1|
           (AE004283) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 256
           
 Score =  128 bits (319), Expect = 6e-29
 Identities = 86/250 (34%), Positives = 128/250 (50%), Gaps = 8/250 (3%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
           M   ++ + L+E LS     D   NGLQVEGK EV+RI   V A +  I  A    AD L
Sbjct: 5   MNNLQLEALLNETLSPQLIKDYCPNGLQVEGKVEVKRIVTGVTASMALIEAAIELKADAL 64

Query: 61  IVHHGIIW-GGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
           +VHHG  W      ++G+  +R++ L+ +++NLY  H+PLD+HP++GNN QL + L +  
Sbjct: 65  LVHHGYFWKNEPEAIRGMKGRRIRTLIQNDLNLYAYHLPLDIHPQLGNNAQLAQRLGI-C 123

Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKL---PVDYVRSYEFGLQEIKRVAVVS 176
           ++   E     +   G F +P     +A  + + L   P+         L  I+ V   +
Sbjct: 124 VDGGLEGHPQSVAMFGHFLQPLTGEELAHRIGQVLNRTPLHIAPDQADKL--IETVGWCT 181

Query: 177 GAGGFAIE-EASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVRE 235
           G G   IE  AS   D  I+GEIS     +A +  +   +AGH+ATE  G+KAL + + E
Sbjct: 182 GGGQDYIELAASRGLDAFISGEISERTTYSAREQSIHYFSAGHHATERYGIKALGEWLAE 241

Query: 236 KFGVKTIFID 245
             G    FID
Sbjct: 242 NHGFDVTFID 251


>pir||C71557 probable ACR - Chlamydia trachomatis (serotype D, strain UW3/Cx)
           >gi|3328505|gb|AAC67699.1| (AE001284) ACR family
           [Chlamydia trachomatis]
           Length = 251
           
 Score =  125 bits (312), Expect = 4e-28
 Identities = 82/250 (32%), Positives = 133/250 (52%), Gaps = 7/250 (2%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
           M   ++++ L+E L    + D   NGLQV   +  + ++A AV A L TI KA A  A++
Sbjct: 1   MNVSDLLNILNELLHPEYFSDYGPNGLQVGNAQTAIRKVAVAVTADLATIEKAIACEANV 60

Query: 60  LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
           L+VHHGI W G+ Y + G+  +R++ L+   + L   H+PLD H  +GNN ++ + L  E
Sbjct: 61  LLVHHGIFWKGMPYSITGILYQRMQRLMEGNIQLIAYHLPLDAHTTIGNNWKVARDLGWE 120

Query: 119 PLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILA-EKLPVDYVRSYEFGLQEIKRVAVVSG 177
            LE FG  +   +G  G F E +    I+Q+ A  + PV  +     G + +   A++SG
Sbjct: 121 QLESFGSSQP-SLGVKGVFPEMEVHDFISQLSAYYQTPV--LAKALGGKKRVSSAALISG 177

Query: 178 AGGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREK 236
                I EA +++ D  ITG      +  A +L +  +A GH ATE +G KAL + ++  
Sbjct: 178 GAYREISEAKNQQVDCFITGNFDEPAWSLAHELAIHFLAFGHTATEKVGPKALAQYLKGA 237

Query: 237 FGVKTIFIDS 246
                +F+D+
Sbjct: 238 GLESVVFLDT 247


>pir||C70158 conserved hypothetical protein BB0468 - Lyme disease spirochete
           >gi|2688374|gb|AAC66826.1| (AE001151) conserved
           hypothetical protein [Borrelia burgdorferi]
           Length = 248
           
 Score =  119 bits (295), Expect = 4e-26
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 18/249 (7%)

Query: 10  LDEYLSISSYP--DKSSNGLQVEG-KEEVERIAFAVDACLDTIAKARAFNADMLIVHHGI 66
           L+    I+ Y   DK+ NGLQV     +V ++AFAVDA   T+ +A+    D LI HHGI
Sbjct: 10  LNSIFDINKYEHIDKNLNGLQVGNINAKVNKVAFAVDASFSTLKEAKG--NDFLITHHGI 67

Query: 67  IWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPFGEY 126
            W     +      + K L+ + + LY  H+P+D H    ++      L L+    F  Y
Sbjct: 68  FWSKKERIVSNMYDKTKFLIENNLALYSVHLPMDAHSVYSHSKVFSDFLGLKNSFAFANY 127

Query: 127 KGIKIGYIGE----FEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGGFA 182
            G+ +G I +    F E     ++ +I  E   + + + ++   + + +VA+VSG+G   
Sbjct: 128 GGVNLGIIADSVFSFSE-----ILEKIKKENKHILFSKKFK---ESVNKVAIVSGSGYSF 179

Query: 183 IEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
            EEA     DL ITG+ SH  Y  AE+  V++I AGHY TET G+  LM+  + +  ++ 
Sbjct: 180 FEEALCHDVDLFITGDTSHQIYSLAEEFGVNLIFAGHYFTETFGLIKLMEDFKIQEDLEV 239

Query: 242 IFIDSPTGL 250
            FI   T L
Sbjct: 240 KFICKNTNL 248


>sp|Q58337|Y927_METJA HYPOTHETICAL PROTEIN MJ0927 >gi|2128040|pir||G64415 hypothetical
           protein homolog MJ0927 - Methanococcus jannaschii
           >gi|1591598|gb|AAB98929.1| (U67536) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 249
           
 Score = 99.8 bits (245), Expect = 3e-20
 Identities = 74/250 (29%), Positives = 131/250 (51%), Gaps = 12/250 (4%)

Query: 1   MEREEIVSFLDEYLSISSYPDKSSNGLQVEGK--EEVERIAFAVDACLDTIAKARAFNAD 58
           M+ +EI+ F++ +       +  + GLQV     +E++++  A+D  L  I KA     D
Sbjct: 6   MKAKEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVD 65

Query: 59  MLIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
            L  HH ++   +    G+  K+LK L+ +++ LY AH  LD+    G N  L +L NLE
Sbjct: 66  FLFTHHPLLKDPIRNFTGVIYKKLKILMENDIILYSAHTNLDICKN-GLNDALAELYNLE 124

Query: 119 PLEPFGEYKGIKIG-YIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG 177
             +P  +    ++G + G FEE      I +    K P+  V+S E  + +  ++AV+SG
Sbjct: 125 NPKPLYDNGLGRVGIFKGSFEE---FLEITKKYIHKNPI-VVKSKE--VDDNFKLAVLSG 178

Query: 178 AG--GFAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVRE 235
            G    +I+  +EKAD+ ++G+++H     AE+L + V+ A HY+TE  G+K   + +  
Sbjct: 179 YGLSQSSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGLKKFKEFLSS 238

Query: 236 KFGVKTIFID 245
              ++ I +D
Sbjct: 239 NLDLEIISLD 248


>gb|AAA23326.1| (L01112) ORF7 [Allochromatium vinosum]
           Length = 156
           
 Score = 87.4 bits (213), Expect = 1e-16
 Identities = 46/132 (34%), Positives = 75/132 (55%), Gaps = 1/132 (0%)

Query: 5   EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
           +++ + D+ L  + + D + NGLQVEG+  ++R+   V A    I  A A +AD ++VHH
Sbjct: 10  DLIRYCDDVLDAARFADYAPNGLQVEGERPLQRLVSGVTASAALIEAAIAEHADAILVHH 69

Query: 65  GIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
           G  W   +  + G+  +R + LLS+ ++L   H+PLD HPE+GNN  L + L+   +EP 
Sbjct: 70  GWFWKNENPCLIGIKGQRARTLLSAGVSLIAYHLPLDAHPELGNNATLGRRLDFIDMEPT 129

Query: 124 GEYKGIKIGYIG 135
               G+    IG
Sbjct: 130 ALANGLLWAAIG 141


>sp|P45371|YPH7_CHRVI HYPOTHETICAL PROTEIN IN PHBB 3'REGION (ORF7) >gi|322004|pir||S29280
           hypothetical protein 7 - Chromatium vinosum
           Length = 155
           
 Score = 87.4 bits (213), Expect = 1e-16
 Identities = 46/132 (34%), Positives = 75/132 (55%), Gaps = 1/132 (0%)

Query: 5   EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
           +++ + D+ L  + + D + NGLQVEG+  ++R+   V A    I  A A +AD ++VHH
Sbjct: 10  DLIRYCDDVLDAARFADYAPNGLQVEGERPLQRLVSGVTASAALIEAAIAEHADAILVHH 69

Query: 65  GIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
           G  W   +  + G+  +R + LLS+ ++L   H+PLD HPE+GNN  L + L+   +EP 
Sbjct: 70  GWFWKNENPCLIGIKGQRARTLLSAGVSLIAYHLPLDAHPELGNNATLGRRLDFIDMEPT 129

Query: 124 GEYKGIKIGYIG 135
               G+    IG
Sbjct: 130 ALANGLLWAAIG 141


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86861433
Number of Sequences: 2977
Number of extensions: 3552353
Number of successful extensions: 10304
Number of sequences better than 1.0e-10: 20
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10260
Number of HSP's gapped (non-prelim): 22
length of query: 250
length of database: 189,106,746
effective HSP length: 57
effective length of query: 193
effective length of database: 154,992,987
effective search space: 29913646491
effective search space used: 29913646491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)