BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1433 (PAB1433) DE:Hypothetical protein
(250 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75054 hypothetical protein PAB1433 - Pyrococcus abyssi (st... 494 e-139
pir||B71107 hypothetical protein PH0627 - Pyrococcus horikoshii ... 422 e-117
gi|11499366 conserved hypothetical protein [Archaeoglobus fulgid... 246 2e-64
pir||C75560 conserved hypothetical protein - Deinococcus radiodu... 201 7e-51
gb|AAG19990.1| (AE005081) Vng1766c [Halobacterium sp. NRC-1] 191 6e-48
pir||G71257 conserved hypothetical protein TP0977 - syphilis spi... 164 1e-39
sp|Q57354|YBGI_HAEIN HYPOTHETICAL PROTEIN HI0105 >gi|1074261|pir... 155 3e-37
pir||A83089 conserved hypothetical protein PA4445 [imported] - P... 146 3e-34
sp|P75743|YBGI_ECOLI HYPOTHETICAL 26.9 KDA PROTEIN IN PHRB-NEI I... 146 3e-34
dbj|BAB13010.1| (AP001118) hypothetical protein [Buchnera sp. APS] 139 4e-32
pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria ... 138 8e-32
pir||G81011 conserved hypothetical protein NMB2054 [imported] - ... 136 3e-31
pir||F72114 conserved hypothetical protein CP0635 [imported] - C... 134 1e-30
pir||B81709 conserved hypothetical protein TC0384 [imported] - C... 132 3e-30
pir||C82119 conserved hypothetical protein VC2093 [imported] - V... 128 6e-29
pir||C71557 probable ACR - Chlamydia trachomatis (serotype D, st... 125 4e-28
pir||C70158 conserved hypothetical protein BB0468 - Lyme disease... 119 4e-26
sp|Q58337|Y927_METJA HYPOTHETICAL PROTEIN MJ0927 >gi|2128040|pir... 100 3e-20
gb|AAA23326.1| (L01112) ORF7 [Allochromatium vinosum] 87 1e-16
sp|P45371|YPH7_CHRVI HYPOTHETICAL PROTEIN IN PHBB 3'REGION (ORF7... 87 1e-16
>pir||D75054 hypothetical protein PAB1433 - Pyrococcus abyssi (strain Orsay)
>gi|5458842|emb|CAB50329.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 250
Score = 494 bits (1258), Expect = e-139
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML
Sbjct: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
Query: 61 IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL
Sbjct: 61 IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG
Sbjct: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK
Sbjct: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
Query: 241 TIFIDSPTGL 250
TIFIDSPTGL
Sbjct: 241 TIFIDSPTGL 250
>pir||B71107 hypothetical protein PH0627 - Pyrococcus horikoshii
>gi|3257033|dbj|BAA29716.1| (AP000003) 250aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 250
Score = 422 bits (1074), Expect = e-117
Identities = 204/250 (81%), Positives = 228/250 (90%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
M+R+EIVSFLDE+L+IS+YPDKS NGLQVEGKEEV IAFAVDA LDTI KA+ FNADML
Sbjct: 1 MDRDEIVSFLDEFLNISAYPDKSKNGLQVEGKEEVNTIAFAVDASLDTILKAKVFNADML 60
Query: 61 IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
IVHHGIIWGG+SYV+GL AKRLK LL + +NLY H+PLD HPEVGNNVQLLKLLNLE
Sbjct: 61 IVHHGIIWGGISYVRGLIAKRLKELLVAGINLYAVHLPLDAHPEVGNNVQLLKLLNLEAK 120
Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
EPFGEY G+KIGYIGEF+EPKPLP+IAQILAEKLP +YV+SYEFGLQE+KR+AVVSG GG
Sbjct: 121 EPFGEYHGVKIGYIGEFDEPKPLPLIAQILAEKLPAEYVKSYEFGLQEVKRIAVVSGGGG 180
Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
FAIEEAS KADLLITGEI+H DYR AEDLRVSVIAAGHYATETLGVKALM +++EKFGVK
Sbjct: 181 FAIEEASRKADLLITGEITHEDYRVAEDLRVSVIAAGHYATETLGVKALMGVLKEKFGVK 240
Query: 241 TIFIDSPTGL 250
T+FID+PTGL
Sbjct: 241 TVFIDNPTGL 250
>gi|11499366 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451201|pir||H69471 conserved hypothetical protein
AF1777 - Archaeoglobus fulgidus
>gi|2648773|gb|AAB89474.1| (AE000980) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 245
Score = 246 bits (622), Expect = 2e-64
Identities = 118/251 (47%), Positives = 173/251 (68%), Gaps = 7/251 (2%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
M E+V FLD++L I+SY D S+NGLQVEG EEV+++AFAVDA +++ A+A NADML
Sbjct: 1 MNLAEVVRFLDDFLEINSYQDVSNNGLQVEGSEEVKKVAFAVDASMESFRAAKAVNADML 60
Query: 61 IVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPL 120
+VHHG+IWGG+ Y++G+ +R++ LL S ++LY AH+PLD H EVGNN +L+ + EP
Sbjct: 61 VVHHGLIWGGIGYIRGIVKRRIEFLLRSNLSLYAAHLPLDAHREVGNNAVILRKIGAEPQ 120
Query: 121 EPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGG 180
E FGEYKG+KIG+ + E+ + IA+ L + + FG + +++VA VSG G
Sbjct: 121 EEFGEYKGVKIGFSAKLEKATAVGEIAEKLGPAMVL------PFGEERVRKVAAVSGKGC 174
Query: 181 FAIEEASEK-ADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGV 239
FA+ EA + +L ITGE H Y A++ ++V GHY +E GV++LM++VREK G+
Sbjct: 175 FALNEAIDAGVELFITGEPEHEAYHLAKEGGINVFFLGHYESEKFGVQSLMEVVREKLGI 234
Query: 240 KTIFIDSPTGL 250
+ +F+D PT L
Sbjct: 235 EAVFLDIPTNL 245
>pir||C75560 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457771|gb|AAF09697.1|AE001873_7 (AE001873)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 272
Score = 201 bits (506), Expect = 7e-51
Identities = 105/249 (42%), Positives = 152/249 (60%), Gaps = 2/249 (0%)
Query: 3 REEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIV 62
R+E+V +L EYL I +YPD S NGLQ++G +++ RIA +VD L T+ A AD+L+V
Sbjct: 25 RDELVRWLGEYLRIGAYPDPSLNGLQIQGTDKIRRIAASVDTSLQTLQAAAESGADLLLV 84
Query: 63 HHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEP 122
HHG+ WG + G +R++ + +++NLY AHIPLD HPEVGNN + + L+L L+P
Sbjct: 85 HHGLFWGRPLAITGPHYERVRTAIQADLNLYAAHIPLDAHPEVGNNAMIARALSLTDLQP 144
Query: 123 FGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGGFA 182
FG+++G KIG G L A + +KL + + G I RV V SG+G A
Sbjct: 145 FGDWQGHKIGVAGTLPRELGLQDFADRI-QKLTGEICLVHGGGSPNIHRVGVTSGSGAGA 203
Query: 183 IEEASEKA-DLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
I EA+ D L+TGE H + + + V+VI AGHY TE GV+AL + ++FG+
Sbjct: 204 IAEAAAMGLDTLLTGEPEHKYFHDSFEYGVNVIFAGHYETEVFGVRALAARIEDEFGIPW 263
Query: 242 IFIDSPTGL 250
F++ PTGL
Sbjct: 264 QFLNFPTGL 272
>gb|AAG19990.1| (AE005081) Vng1766c [Halobacterium sp. NRC-1]
Length = 253
Score = 191 bits (481), Expect = 6e-48
Identities = 110/254 (43%), Positives = 153/254 (59%), Gaps = 5/254 (1%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
M+ ++ S ++ L ++ Y D ++NGLQV G VERIAFAVDA TI+ A + AD+
Sbjct: 1 MDVSDVTSRYNDRLRVTDYADAATNGLQVGPGDRSVERIAFAVDAAAATISDAVEWGADL 60
Query: 60 LIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
L+VHHG+ WGG+ V G R+ AL+ E LY AH+PLD HPE+GN + +L L
Sbjct: 61 LVVHHGVAWGGLDAVTGREYDRIAALVDGECALYAAHLPLDGHPELGNAAHVADVLGLTQ 120
Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPV--DYVRSYEFGLQEIKRVAVVSG 177
PFG++ G +IG G+ +P P +++ LA LP V+ + G E+ VAVV+G
Sbjct: 121 RSPFGDHSGEQIGLQGQLPDPTSAPALSKSLAAALPTGDQPVQVLDVGPAELTDVAVVTG 180
Query: 178 AGGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREK 236
+G + EA + D L+TGE Y A + VSV AGHYATET GV+AL + V +
Sbjct: 181 SGADWLREAEANGVDALVTGEGKGKLYHEAREAGVSVFLAGHYATETGGVRAL-EAVADD 239
Query: 237 FGVKTIFIDSPTGL 250
+GV+T FI PTGL
Sbjct: 240 WGVETRFISHPTGL 253
>pir||G71257 conserved hypothetical protein TP0977 - syphilis spirochete
>gi|3323299|gb|AAC65932.1| (AE001265) conserved
hypothetical protein [Treponema pallidum]
Length = 286
Score = 164 bits (410), Expect = 1e-39
Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 36/286 (12%)
Query: 1 MEREEIVSFLDEYLSISSYP--DKSSNGLQVEGK-EEVERIAFAVDACLDTIAKARAFNA 57
M E+ ++ +L+ + D + NGLQV V ++AFAVDAC +I A A
Sbjct: 1 MTARELDAYFRSFLNFGPFVSCDVALNGLQVANSGAPVHKVAFAVDACAQSIDAAARAGA 60
Query: 58 DMLIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNL 117
ML VHHG+ WG + + G+ +R++ALL+ ++ LY H+PLD HP+ GNN L + L
Sbjct: 61 RMLFVHHGLFWGRIEPLTGMQYRRVQALLTHDIALYAVHLPLDAHPQYGNNAGLAARVGL 120
Query: 118 EPLEPFGEYKGIKIGYIGEFEE------------------------------PKPLPMIA 147
PFG +G +G G E P +
Sbjct: 121 RQGGPFGFIRGTAVGLWGTVAENTTPSQEAMQQHAACTAPDTHRVTHANAISPSAGLSLQ 180
Query: 148 QILAEKLPVDY--VRSYEFGLQEIKRVAVVSG-AGGFAIEEASEKADLLITGEISHADYR 204
Q++ P + VR FG Q I+RV ++SG AG + E + DL ITGEI H+ Y
Sbjct: 181 QVVHRLFPAEEQPVRLLPFGKQRIERVGILSGKAGTYLAEAIALDLDLFITGEIEHSCYH 240
Query: 205 TAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKTIFIDSPTGL 250
TA + +SVIA GHY TET+G++ + + ++ G++T+F+D PTG+
Sbjct: 241 TAREHSISVIAGGHYQTETVGLQLVARKLQRDTGIETLFLDIPTGM 286
>sp|Q57354|YBGI_HAEIN HYPOTHETICAL PROTEIN HI0105 >gi|1074261|pir||G64142 conserved
hypothetical protein HI0105 - Haemophilus influenzae
>gi|1573058|gb|AAC21783.1| (U32696) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 279
Score = 155 bits (389), Expect = 3e-37
Identities = 94/251 (37%), Positives = 145/251 (57%), Gaps = 5/251 (1%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
M E+ +++ LS D + NGLQVEGK E+++I V A I A + NAD +
Sbjct: 29 MNNLELEQLINQKLSSDKINDYAPNGLQVEGKTEIKKIITGVTASQALINYAISQNADAI 88
Query: 61 IVHHGIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
+VHHG W + ++G+ KR+KALL +++NLY H+PLDVHPE+GNN QL KLL++E
Sbjct: 89 LVHHGYFWKSETPCIRGMKGKRIKALLVNDINLYGYHLPLDVHPELGNNAQLAKLLDIEN 148
Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAG 179
L+P E + I GE +EP A+ + + L + E G I+++ + +G G
Sbjct: 149 LQPL-EKGSVSIPVWGELKEPMTGKDFAEKIEKVLNRKPLICIENGPHLIRKIGICTGGG 207
Query: 180 GFAIEEASEK-ADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFG 238
I+ A+E+ D ITGE+S +A + + +AGH+ATE G+KAL + + +++G
Sbjct: 208 QGYIDLAAEQGCDAFITGEVSEQTIHSAREQGLYFFSAGHHATERYGIKALGEWLAKEYG 267
Query: 239 VKTIF--IDSP 247
F ID+P
Sbjct: 268 FDVEFKDIDNP 278
>pir||A83089 conserved hypothetical protein PA4445 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950680|gb|AAG07833.1|AE004859_2 (AE004859)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 252
Score = 146 bits (364), Expect = 3e-34
Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 30/257 (11%)
Query: 6 IVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHHG 65
+V D YL + D NGLQVEG+ +V RI V A + A +AD+++VHHG
Sbjct: 8 LVEEADRYLDAARIQDYCPNGLQVEGRPQVRRIVSGVTASQALLDAAVEADADVVLVHHG 67
Query: 66 IIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE---PLE 121
W G + V G+ +RLK LL+++++L H+PLD+HPEVGNNVQL + L E PLE
Sbjct: 68 YFWKGENPCVVGMKQRRLKTLLNNDISLLAYHLPLDLHPEVGNNVQLARQLGFEVEGPLE 127
Query: 122 PFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGL----------QEIKR 171
P P+ + ++ + P D+ R L Q I+R
Sbjct: 128 P---------------GNPRSIVLLGSLAEPMQPADFARHVRDALGREPLLVDAGQPIRR 172
Query: 172 VA-VVSGAGGFAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALM 230
+A GA G+ + + D +TGE+S +A + +S IAAGH+ATE GV+AL
Sbjct: 173 IAWCTGGAQGYIDQAIAAGVDAYLTGEVSEQTVHSARENGISFIAAGHHATERYGVQALG 232
Query: 231 KLVREKFGVKTIFIDSP 247
+ ++F ++ +FID P
Sbjct: 233 DYLGKRFAIEHLFIDCP 249
>sp|P75743|YBGI_ECOLI HYPOTHETICAL 26.9 KDA PROTEIN IN PHRB-NEI INTERGENIC REGION
>gi|7451205|pir||E64806 ybgI protein - Escherichia coli
>gi|1786928|gb|AAC73804.1| (AE000174) orf, hypothetical
protein [Escherichia coli K12]
>gi|4062306|dbj|BAA35374.1| (D90710) Hypothetical
protein HI0105 [Escherichia coli]
Length = 247
Score = 146 bits (364), Expect = 3e-34
Identities = 92/255 (36%), Positives = 137/255 (53%), Gaps = 19/255 (7%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
M+ E+ ++E L+ ++ D + NGLQVEGKE V++I V A + +A AD +
Sbjct: 1 MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAV 60
Query: 61 IVHHGIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLL---- 115
IVHHG W G S ++G+ RLK LL++++NLY H+PLD HPE+GNN QL LL
Sbjct: 61 IVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITV 120
Query: 116 --NLEPLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVA 173
+EPL P+ GE P P +A + +L + + G + ++RVA
Sbjct: 121 MGEIEPLVPW-----------GELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVA 169
Query: 174 VVSGAGGFAIEEASE-KADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKL 232
+G G I+ A+ D ITGE+S +A + + AAGH+ATE G++AL +
Sbjct: 170 WCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEW 229
Query: 233 VREKFGVKTIFIDSP 247
+ E + FID P
Sbjct: 230 LNENTDLDVTFIDIP 244
>dbj|BAB13010.1| (AP001118) hypothetical protein [Buchnera sp. APS]
Length = 247
Score = 139 bits (346), Expect = 4e-32
Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 19/244 (7%)
Query: 10 LDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHHGIIWG 69
+++ L + Y D NGLQ+EG E V++I V AC + KA +NAD LIVHHG W
Sbjct: 10 INKKLLSNQYQDTVPNGLQIEGTEIVKKIITGVTACQALLDKALFYNADTLIVHHGYFWK 69
Query: 70 GVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE------PLEP 122
S Y+ + +RLK +LS +NLY H+PLDVHP++GNN Q+ K LN++ P
Sbjct: 70 NESKYIHNMQRQRLKTILSHNINLYSWHLPLDVHPKLGNNAQIAKKLNIDIQGSILPYVL 129
Query: 123 FGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAG-GF 181
+G K G+ EF A + K + YE I RVA SG G GF
Sbjct: 130 WGTTKNKMTGF--EF---------ANKIERKFKKYPIHLYENAPLYISRVAWCSGRGQGF 178
Query: 182 AIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
+ + D +TGEIS A++L + + GH+ATE GVK+L + ++ K+ +
Sbjct: 179 IKKACAFGIDAFLTGEISEETTHIAKELGIHFFSLGHHATEKDGVKSLGEWLQRKYDLCV 238
Query: 242 IFID 245
FID
Sbjct: 239 DFID 242
>pir||D81954 hypothetical protein NMA0382 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379135|emb|CAB83683.1|
(AL162753) hypothetical protein NMA0382 [Neisseria
meningitidis Z2491]
Length = 249
Score = 138 bits (343), Expect = 8e-32
Identities = 87/245 (35%), Positives = 131/245 (52%), Gaps = 6/245 (2%)
Query: 3 REEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIV 62
R + +++ +E L + + D + NGLQVEG+E + +I +V A I A AD+L+V
Sbjct: 4 RRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVTASRAAIDFAVEQKADLLLV 63
Query: 63 HHGIIWGG-VSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLE 121
HHG+ W + V G +R+ ALL ++N+ H+PLD HP +GNN QL L +
Sbjct: 64 HHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRLGFATEK 123
Query: 122 PFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG-AGG 180
FGE + G + + + L + + ++ PV + +EI+RVA SG A G
Sbjct: 124 RFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVIGKPE----REIRRVAWCSGGAQG 179
Query: 181 FAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVK 240
F E DL +TGEIS A Y A + + I+AGH+ATE GV+AL + E FG++
Sbjct: 180 FFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHHATERYGVRALAESAAEVFGLE 239
Query: 241 TIFID 245
D
Sbjct: 240 VCHFD 244
>pir||G81011 conserved hypothetical protein NMB2054 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227316|gb|AAF42374.1| (AE002555) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 249
Score = 136 bits (338), Expect = 3e-31
Identities = 87/243 (35%), Positives = 132/243 (53%), Gaps = 6/243 (2%)
Query: 5 EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
+ +++ +E L + + D + NGLQVEG+E + +I +V A I A AD+L+VHH
Sbjct: 6 DFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVTASRAAIDFAVEQKADLLLVHH 65
Query: 65 GIIWGG-VSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
G+ W + V G +R+ ALL ++N+ H+PLD HP +GNN QL L + F
Sbjct: 66 GMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLDAHPTLGNNAQLADRLGFATEKRF 125
Query: 124 GEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG-AGGFA 182
GE + G + + + L + + ++ PV + + E +EI+RVA SG A GF
Sbjct: 126 GEQNLLNSGSLKQAKTLGALAAHIETVLQRKPV-VIGNPE---REIRRVAWCSGGAQGFF 181
Query: 183 IEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKTI 242
E DL +TGEIS A Y A + + I+AGH+ATE GV+AL + E FG++
Sbjct: 182 QTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHHATERYGVRALAESAAEVFGLEVC 241
Query: 243 FID 245
D
Sbjct: 242 HFD 244
>pir||F72114 conserved hypothetical protein CP0635 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4376402|gb|AAD18290.1| (AE001600) ACR family
[Chlamydophila pneumoniae CWL029]
>gi|7189549|gb|AAF38450.1| (AE002221) conserved
hypothetical protein [Chlamydophila pneumoniae AR39]
>gi|8978510|dbj|BAA98347.1| (AP002545) ACR family
[Chlamydophila pneumoniae J138]
Length = 251
Score = 134 bits (333), Expect = 1e-30
Identities = 85/252 (33%), Positives = 135/252 (52%), Gaps = 11/252 (4%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
M +++S L+ LS + D NGLQV + + V++IA AV A L+TI +A A A++
Sbjct: 1 MNVADLLSHLETLLSSKIFQDYGPNGLQVGDPQTPVKKIAVAVTADLETIKQAVAAEANV 60
Query: 60 LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
LIVHHGI W G+ Y + G+ KR++ L+ + L H+PLD HP +GNN ++ LN
Sbjct: 61 LIVHHGIFWKGMPYPITGMIHKRIQLLIEHNIQLIAYHLPLDAHPTLGNNWRVALDLNWH 120
Query: 119 PLEPFGE---YKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVV 175
L+PFG Y G++ G F P + +L++ S G + A++
Sbjct: 121 DLKPFGSSLPYLGVQ----GSF-SPIDIDSFIDLLSQYYQAPLKGSALGGPSRVSSAALI 175
Query: 176 SGAGGFAIEE-ASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVR 234
SG + A+ + D ITG + TA + ++ +A GH ATE +G K+L + ++
Sbjct: 176 SGGAYRELSSAATSQVDCFITGNFDEPAWSTALESNINFLAFGHTATEKVGPKSLAEHLK 235
Query: 235 EKFGVKTIFIDS 246
+F + T FID+
Sbjct: 236 SEFPISTTFIDT 247
>pir||B81709 conserved hypothetical protein TC0384 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190424|gb|AAF39241.1|
(AE002305) conserved hypothetical protein [Chlamydia
muridarum]
Length = 251
Score = 132 bits (330), Expect = 3e-30
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 5/249 (2%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
M +++ L+E L + D NGLQV + + V +IA AV A L TI KA A +++
Sbjct: 1 MNVADLLHVLNELLYPELFNDYGPNGLQVGDAQAPVRKIAVAVTADLATIEKAIACESNV 60
Query: 60 LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
L+VHHG+ W G+ Y + G+ +R++ L+ + + L H+PLD HPEVGNN ++ K L E
Sbjct: 61 LLVHHGLFWKGMPYPITGMLYQRMQRLIENNIQLIAYHLPLDAHPEVGNNWKVAKDLGWE 120
Query: 119 PLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGA 178
LE FG K +G G F E ++Q L+ + G + I A++SG
Sbjct: 121 RLESFGSTKP-SLGVKGVFPEIGIHDFVSQ-LSSYYQAPVLAKALGGKESISSAALISGG 178
Query: 179 GGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKF 237
I EA S++ D ITG + A +L ++ +A GH ATE +G KAL + +++
Sbjct: 179 AYKEISEAKSQEVDCFITGNFDEPAWSLAHELAINFLAFGHTATEKVGPKALTQYLKQVG 238
Query: 238 GVKTIFIDS 246
+F+D+
Sbjct: 239 CDSVVFLDT 247
>pir||C82119 conserved hypothetical protein VC2093 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656642|gb|AAF95239.1|
(AE004283) conserved hypothetical protein [Vibrio
cholerae]
Length = 256
Score = 128 bits (319), Expect = 6e-29
Identities = 86/250 (34%), Positives = 128/250 (50%), Gaps = 8/250 (3%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADML 60
M ++ + L+E LS D NGLQVEGK EV+RI V A + I A AD L
Sbjct: 5 MNNLQLEALLNETLSPQLIKDYCPNGLQVEGKVEVKRIVTGVTASMALIEAAIELKADAL 64
Query: 61 IVHHGIIW-GGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEP 119
+VHHG W ++G+ +R++ L+ +++NLY H+PLD+HP++GNN QL + L +
Sbjct: 65 LVHHGYFWKNEPEAIRGMKGRRIRTLIQNDLNLYAYHLPLDIHPQLGNNAQLAQRLGI-C 123
Query: 120 LEPFGEYKGIKIGYIGEFEEPKPLPMIAQILAEKL---PVDYVRSYEFGLQEIKRVAVVS 176
++ E + G F +P +A + + L P+ L I+ V +
Sbjct: 124 VDGGLEGHPQSVAMFGHFLQPLTGEELAHRIGQVLNRTPLHIAPDQADKL--IETVGWCT 181
Query: 177 GAGGFAIE-EASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVRE 235
G G IE AS D I+GEIS +A + + +AGH+ATE G+KAL + + E
Sbjct: 182 GGGQDYIELAASRGLDAFISGEISERTTYSAREQSIHYFSAGHHATERYGIKALGEWLAE 241
Query: 236 KFGVKTIFID 245
G FID
Sbjct: 242 NHGFDVTFID 251
>pir||C71557 probable ACR - Chlamydia trachomatis (serotype D, strain UW3/Cx)
>gi|3328505|gb|AAC67699.1| (AE001284) ACR family
[Chlamydia trachomatis]
Length = 251
Score = 125 bits (312), Expect = 4e-28
Identities = 82/250 (32%), Positives = 133/250 (52%), Gaps = 7/250 (2%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQV-EGKEEVERIAFAVDACLDTIAKARAFNADM 59
M ++++ L+E L + D NGLQV + + ++A AV A L TI KA A A++
Sbjct: 1 MNVSDLLNILNELLHPEYFSDYGPNGLQVGNAQTAIRKVAVAVTADLATIEKAIACEANV 60
Query: 60 LIVHHGIIWGGVSY-VKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
L+VHHGI W G+ Y + G+ +R++ L+ + L H+PLD H +GNN ++ + L E
Sbjct: 61 LLVHHGIFWKGMPYSITGILYQRMQRLMEGNIQLIAYHLPLDAHTTIGNNWKVARDLGWE 120
Query: 119 PLEPFGEYKGIKIGYIGEFEEPKPLPMIAQILA-EKLPVDYVRSYEFGLQEIKRVAVVSG 177
LE FG + +G G F E + I+Q+ A + PV + G + + A++SG
Sbjct: 121 QLESFGSSQP-SLGVKGVFPEMEVHDFISQLSAYYQTPV--LAKALGGKKRVSSAALISG 177
Query: 178 AGGFAIEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREK 236
I EA +++ D ITG + A +L + +A GH ATE +G KAL + ++
Sbjct: 178 GAYREISEAKNQQVDCFITGNFDEPAWSLAHELAIHFLAFGHTATEKVGPKALAQYLKGA 237
Query: 237 FGVKTIFIDS 246
+F+D+
Sbjct: 238 GLESVVFLDT 247
>pir||C70158 conserved hypothetical protein BB0468 - Lyme disease spirochete
>gi|2688374|gb|AAC66826.1| (AE001151) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 248
Score = 119 bits (295), Expect = 4e-26
Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 10 LDEYLSISSYP--DKSSNGLQVEG-KEEVERIAFAVDACLDTIAKARAFNADMLIVHHGI 66
L+ I+ Y DK+ NGLQV +V ++AFAVDA T+ +A+ D LI HHGI
Sbjct: 10 LNSIFDINKYEHIDKNLNGLQVGNINAKVNKVAFAVDASFSTLKEAKG--NDFLITHHGI 67
Query: 67 IWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPFGEY 126
W + + K L+ + + LY H+P+D H ++ L L+ F Y
Sbjct: 68 FWSKKERIVSNMYDKTKFLIENNLALYSVHLPMDAHSVYSHSKVFSDFLGLKNSFAFANY 127
Query: 127 KGIKIGYIGE----FEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSGAGGFA 182
G+ +G I + F E ++ +I E + + + ++ + + +VA+VSG+G
Sbjct: 128 GGVNLGIIADSVFSFSE-----ILEKIKKENKHILFSKKFK---ESVNKVAIVSGSGYSF 179
Query: 183 IEEA-SEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVREKFGVKT 241
EEA DL ITG+ SH Y AE+ V++I AGHY TET G+ LM+ + + ++
Sbjct: 180 FEEALCHDVDLFITGDTSHQIYSLAEEFGVNLIFAGHYFTETFGLIKLMEDFKIQEDLEV 239
Query: 242 IFIDSPTGL 250
FI T L
Sbjct: 240 KFICKNTNL 248
>sp|Q58337|Y927_METJA HYPOTHETICAL PROTEIN MJ0927 >gi|2128040|pir||G64415 hypothetical
protein homolog MJ0927 - Methanococcus jannaschii
>gi|1591598|gb|AAB98929.1| (U67536) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 249
Score = 99.8 bits (245), Expect = 3e-20
Identities = 74/250 (29%), Positives = 131/250 (51%), Gaps = 12/250 (4%)
Query: 1 MEREEIVSFLDEYLSISSYPDKSSNGLQVEGK--EEVERIAFAVDACLDTIAKARAFNAD 58
M+ +EI+ F++ + + + GLQV +E++++ A+D L I KA D
Sbjct: 6 MKAKEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVD 65
Query: 59 MLIVHHGIIWGGVSYVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLE 118
L HH ++ + G+ K+LK L+ +++ LY AH LD+ G N L +L NLE
Sbjct: 66 FLFTHHPLLKDPIRNFTGVIYKKLKILMENDIILYSAHTNLDICKN-GLNDALAELYNLE 124
Query: 119 PLEPFGEYKGIKIG-YIGEFEEPKPLPMIAQILAEKLPVDYVRSYEFGLQEIKRVAVVSG 177
+P + ++G + G FEE I + K P+ V+S E + + ++AV+SG
Sbjct: 125 NPKPLYDNGLGRVGIFKGSFEE---FLEITKKYIHKNPI-VVKSKE--VDDNFKLAVLSG 178
Query: 178 AG--GFAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATETLGVKALMKLVRE 235
G +I+ +EKAD+ ++G+++H AE+L + V+ A HY+TE G+K + +
Sbjct: 179 YGLSQSSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGLKKFKEFLSS 238
Query: 236 KFGVKTIFID 245
++ I +D
Sbjct: 239 NLDLEIISLD 248
>gb|AAA23326.1| (L01112) ORF7 [Allochromatium vinosum]
Length = 156
Score = 87.4 bits (213), Expect = 1e-16
Identities = 46/132 (34%), Positives = 75/132 (55%), Gaps = 1/132 (0%)
Query: 5 EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
+++ + D+ L + + D + NGLQVEG+ ++R+ V A I A A +AD ++VHH
Sbjct: 10 DLIRYCDDVLDAARFADYAPNGLQVEGERPLQRLVSGVTASAALIEAAIAEHADAILVHH 69
Query: 65 GIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
G W + + G+ +R + LLS+ ++L H+PLD HPE+GNN L + L+ +EP
Sbjct: 70 GWFWKNENPCLIGIKGQRARTLLSAGVSLIAYHLPLDAHPELGNNATLGRRLDFIDMEPT 129
Query: 124 GEYKGIKIGYIG 135
G+ IG
Sbjct: 130 ALANGLLWAAIG 141
>sp|P45371|YPH7_CHRVI HYPOTHETICAL PROTEIN IN PHBB 3'REGION (ORF7) >gi|322004|pir||S29280
hypothetical protein 7 - Chromatium vinosum
Length = 155
Score = 87.4 bits (213), Expect = 1e-16
Identities = 46/132 (34%), Positives = 75/132 (55%), Gaps = 1/132 (0%)
Query: 5 EIVSFLDEYLSISSYPDKSSNGLQVEGKEEVERIAFAVDACLDTIAKARAFNADMLIVHH 64
+++ + D+ L + + D + NGLQVEG+ ++R+ V A I A A +AD ++VHH
Sbjct: 10 DLIRYCDDVLDAARFADYAPNGLQVEGERPLQRLVSGVTASAALIEAAIAEHADAILVHH 69
Query: 65 GIIWGGVS-YVKGLFAKRLKALLSSEMNLYVAHIPLDVHPEVGNNVQLLKLLNLEPLEPF 123
G W + + G+ +R + LLS+ ++L H+PLD HPE+GNN L + L+ +EP
Sbjct: 70 GWFWKNENPCLIGIKGQRARTLLSAGVSLIAYHLPLDAHPELGNNATLGRRLDFIDMEPT 129
Query: 124 GEYKGIKIGYIG 135
G+ IG
Sbjct: 130 ALANGLLWAAIG 141
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86861433
Number of Sequences: 2977
Number of extensions: 3552353
Number of successful extensions: 10304
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10260
Number of HSP's gapped (non-prelim): 22
length of query: 250
length of database: 189,106,746
effective HSP length: 57
effective length of query: 193
effective length of database: 154,992,987
effective search space: 29913646491
effective search space used: 29913646491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)