BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1435 (PAB1435) DE:PUTATIVE ENDONUCLEASE.
(144 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75054 probable endonuclease. PAB1435 - Pyrococcus abyssi (... 289 1e-77
pir||D71107 hypothetical protein PH0629 - Pyrococcus horikoshii ... 193 7e-49
pir||E72349 conserved hypothetical protein - Thermotoga maritima... 103 1e-21
gb|AAK43297.1| Conserved hypothetical protein [Sulfolobus solfat... 82 4e-15
pir||E64376 endonuclease III - Methanococcus jannaschii 78 3e-14
sp|Q58030|Y613_METJA PUTATIVE ENDONUCLEASE MJ0613 >gi|2826298|gb... 78 3e-14
pir||C69185 conserved hypothetical protein MTH641 - Methanobacte... 74 7e-13
>pir||B75054 probable endonuclease. PAB1435 - Pyrococcus abyssi (strain Orsay)
>gi|5458840|emb|CAB50327.1| (AJ248287) PUTATIVE
ENDONUCLEASE. [Pyrococcus abyssi]
Length = 144
Score = 289 bits (732), Expect = 1e-77
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MRGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKKKLHWHID 60
MRGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKKKLHWHID
Sbjct: 1 MRGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKKKLHWHID 60
Query: 61 YLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLYRFENAPDDLL 120
YLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLYRFENAPDDLL
Sbjct: 61 YLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLYRFENAPDDLL 120
Query: 121 KRILKERKLEYKVISSAGGAGAGI 144
KRILKERKLEYKVISSAGGAGAGI
Sbjct: 121 KRILKERKLEYKVISSAGGAGAGI 144
>pir||D71107 hypothetical protein PH0629 - Pyrococcus horikoshii
>gi|3257035|dbj|BAA29718.1| (AP000003) 139aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 139
Score = 193 bits (486), Expect = 7e-49
Identities = 90/131 (68%), Positives = 113/131 (85%)
Query: 1 MRGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKKKLHWHID 60
M+GSY LV++L D VVRTK++EF L+RGYYVYVGS MNSLEKRV RHFS++KKLHWHID
Sbjct: 2 MKGSYLLVIFLDKDEVVRTKAREFELTRGYYVYVGSGMNSLEKRVLRHFSRRKKLHWHID 61
Query: 61 YLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLYRFENAPDDLL 120
YLLEKAI LRAYLIPS+ERLEE +S+E+ KYG ++GFG+SDLKV+SNLYRF PD+++
Sbjct: 62 YLLEKAILLRAYLIPSNERLEERISLEIGKYGTPVEGFGSSDLKVKSNLYRFNVEPDEVI 121
Query: 121 KRILKERKLEY 131
R+LK+ L++
Sbjct: 122 IRVLKKLGLKW 132
>pir||E72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981192|gb|AAD35753.1|AE001739_16 (AE001739)
conserved hypothetical protein [Thermotoga maritima]
Length = 143
Score = 103 bits (254), Expect = 1e-21
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 1 MRGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKKKLHWHID 60
M+G+Y L+L L +R K HL GYY YVGSAM KR+ R+F +K HWHID
Sbjct: 1 MKGTYVLLLKLEESVALRYGKKASHLEPGYYAYVGSAMGGFFKRIPRYFLGSRKRHWHID 60
Query: 61 YLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLYRFENAPDDL 119
YLL+ A + ++ S +R+EEE+S +S + E I+ FGASDL+V++NLY + PD L
Sbjct: 61 YLLDHA-QIAGLIMFSGKRIEEEISNVLSYHFEGIEDFGASDLRVKTNLYHVD--PDKL 116
>gb|AAK43297.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 128
Score = 81.5 bits (198), Expect = 4e-15
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 4 SYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNSLEKRVERHFSKKK-KLHWHIDYL 62
SY L++ D+ +RTKSK+F + +G Y YVGS S +RV RHF+K+K HWHIDYL
Sbjct: 3 SYILLIKCKTDTTIRTKSKKFLIRKGVYAYVGSCGRSCGRRVSRHFNKEKSNYHWHIDYL 62
Query: 63 LEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLK-VRSNLY 110
+ P+ +++ + E+EL++ SK I+ FG+SD K +S+L+
Sbjct: 63 TKACEPIGVFVM--NHVGEKELALLFSKNNAFIEEFGSSDDKDAKSHLF 109
>pir||E64376 endonuclease III - Methanococcus jannaschii
Length = 353
Score = 78.4 bits (190), Expect = 3e-14
Identities = 41/112 (36%), Positives = 65/112 (57%), Gaps = 5/112 (4%)
Query: 2 RGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNS---LEKRVERHFSKKKKLHWH 58
+G+Y L + L ++ E +GYY Y+GSA + L+ R+ERH KK+HWH
Sbjct: 240 KGTYILKIRLKEGKKIKFGKTERFFKKGYYFYIGSAFGNSMNLKNRIERHLKDDKKMHWH 299
Query: 59 IDYLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLY 110
IDYLL+ Y+ ++ER+E E++ E K + ++ FG SD K +S+L+
Sbjct: 300 IDYLLKYGKIEEIYI--TNERVECEVANEFIKKFDFVENFGCSDCKCKSHLF 349
>sp|Q58030|Y613_METJA PUTATIVE ENDONUCLEASE MJ0613 >gi|2826298|gb|AAB98606.1| (U67509)
endonuclease III (nth1) [Methanococcus jannaschii]
Length = 344
Score = 78.4 bits (190), Expect = 3e-14
Identities = 41/112 (36%), Positives = 65/112 (57%), Gaps = 5/112 (4%)
Query: 2 RGSYFLVLYLPIDSVVRTKSKEFHLSRGYYVYVGSAMNS---LEKRVERHFSKKKKLHWH 58
+G+Y L + L ++ E +GYY Y+GSA + L+ R+ERH KK+HWH
Sbjct: 231 KGTYILKIRLKEGKKIKFGKTERFFKKGYYFYIGSAFGNSMNLKNRIERHLKDDKKMHWH 290
Query: 59 IDYLLEKAIPLRAYLIPSDERLEEELSVEVSKYGEAIDGFGASDLKVRSNLY 110
IDYLL+ Y+ ++ER+E E++ E K + ++ FG SD K +S+L+
Sbjct: 291 IDYLLKYGKIEEIYI--TNERVECEVANEFIKKFDFVENFGCSDCKCKSHLF 340
>pir||C69185 conserved hypothetical protein MTH641 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621722|gb|AAB85146.1| (AE000844) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 140
Score = 74.1 bits (179), Expect = 7e-13
Identities = 41/101 (40%), Positives = 63/101 (61%), Gaps = 5/101 (4%)
Query: 29 GYYVYVGSAMNSLEKRVERHFSKKKKLHWHIDYLLEKAIPLRAYLIPSDERLEEELSVEV 88
G+YVYVGS +SLE R++RH S +K+ WHID+ L+ A + L +D+R E +V
Sbjct: 32 GFYVYVGSGFSSLEARIKRHLSSEKRRRWHIDHFLDGA-EVECVLYTTDKR-RLECAVSE 89
Query: 89 SKYGE-AIDGFGASDLKVRSNLYRFENAPD--DLLKRILKE 126
+GE ++ GFG SD +S+L+ F+N D + +KR +E
Sbjct: 90 KLHGEKSVRGFGCSDCSCKSHLHHFKNKNDATESVKRAFRE 130
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53461766
Number of Sequences: 2977
Number of extensions: 2172761
Number of successful extensions: 6079
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6068
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 189,106,746
effective HSP length: 54
effective length of query: 90
effective length of database: 156,788,448
effective search space: 14110960320
effective search space used: 14110960320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)