BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1438 (PAB1438) DE:DNA DAMAGE-INDUCIBLE PROTEIN.
(449 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus a... 884 0.0
pir||E71172 probable damage-inducible protein - Pyrococcus horik... 791 0.0
pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Ors... 526 e-148
pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii ... 511 e-144
gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1] 249 5e-65
pir||E72471 probable DNA-damage-inducible protein APE2414 - Aero... 234 1e-60
pir||H70158 conserved hypothetical integral membrane protein BB0... 204 2e-51
dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus h... 201 2e-50
sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGI... 184 1e-45
pir||G72220 conserved hypothetical protein - Thermotoga maritima... 170 3e-41
dbj|BAB05882.1| (AP001514) unknown conserved protein in others [... 165 1e-39
gi|11499066 conserved hypothetical protein [Archaeoglobus fulgid... 164 1e-39
pir||H72331 conserved hypothetical protein - Thermotoga maritima... 162 5e-39
pir||A82049 conserved hypothetical protein VC2671 [imported] - V... 155 1e-36
pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi... 151 1e-35
sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir... 148 2e-34
pir||G71191 probable DNA damage-inducible protein - Pyrococcus h... 147 2e-34
pir||C69140 conserved hypothetical protein MTH314 - Methanobacte... 145 1e-33
pir||A69905 conserved hypothetical protein yoeA - Bacillus subti... 139 5e-32
gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Ha... 136 4e-31
pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeol... 135 1e-30
dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus h... 132 1e-29
emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae] 131 2e-29
pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp... 125 1e-27
pir||G82392 conserved hypothetical protein VCA0989 [imported] - ... 122 7e-27
pir||H69837 conserved hypothetical protein yisQ - Bacillus subti... 122 1e-26
sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir... 119 7e-26
pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (... 111 2e-23
pir||E82296 conserved hypothetical protein VC0650 [imported] - V... 110 3e-23
pir||G64614 conserved hypothetical integral membrane protein HP0... 106 6e-22
gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pum... 102 6e-21
pir||A71849 hypothetical protein jhp1110 - Helicobacter pylori (... 101 1e-20
gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Ha... 100 4e-20
pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (str... 99 9e-20
pir||H64667 conserved hypothetical integral membrane protein HP1... 98 2e-19
pir||H81402 probable integral membrane protein Cj0560 [imported]... 98 3e-19
pir||H82186 probable multidrug resistance protein NorM VC1540 [i... 97 4e-19
dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Acc... 96 6e-19
sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL IN... 96 6e-19
pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelic... 96 6e-19
dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus] 94 2e-18
pir||B83476 probable transporter PA1361 [imported] - Pseudomonas... 92 1e-17
pir||F69906 conserved hypothetical protein yojI - Bacillus subti... 89 8e-17
pir||G70172 conserved hypothetical integral membrane protein BB0... 88 2e-16
dbj|BAB07764.1| (AP001520) unknown conserved protein in others [... 87 5e-16
dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus h... 86 9e-16
gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Ha... 84 3e-15
gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane ... 83 8e-15
gi|8922709 hypothetical protein FLJ10847 [Homo sapiens] >gi|7023... 81 3e-14
pir||E82175 conserved hypothetical protein VC1631 [imported] - V... 80 4e-14
sp|Q55364|Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896 >gi|7... 79 1e-13
pir||H75559 conserved hypothetical protein - Deinococcus radiodu... 75 1e-12
pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella... 75 1e-12
pir||D81950 probable transmembrane efflux protein NMA1022 [impor... 75 2e-12
gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporte... 75 2e-12
pir||F70172 conserved hypothetical integral membrane protein BB0... 75 2e-12
pir||C81156 conserved hypothetical protein NMB0812 [imported] - ... 75 2e-12
pir||T02512 hypothetical protein T19C21.18 - Arabidopsis thalian... 74 4e-12
pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas... 74 4e-12
pir||T50435 conserved hypothetical protein SPCC4B3.13 [imported]... 73 5e-12
pir||G82364 DNA-damage-inducible protein F VC0090 [imported] - V... 71 2e-11
pir||T08969 hypothetical protein F19B15.170 - Arabidopsis thalia... 71 3e-11
sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF ... 70 4e-11
gi|11428103 hypothetical protein FLJ10847 [Homo sapiens] 69 1e-10
>pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus abyssi (strain
Orsay) >gi|5458833|emb|CAB50320.1| (AJ248287) DNA
DAMAGE-INDUCIBLE PROTEIN. [Pyrococcus abyssi]
Length = 449
Score = 884 bits (2260), Expect = 0.0
Identities = 449/449 (100%), Positives = 449/449 (100%)
Query: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW
Sbjct: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
Query: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP 120
PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP
Sbjct: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP 120
Query: 121 FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN
Sbjct: 121 FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
Query: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK
Sbjct: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
Query: 241 TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT
Sbjct: 241 TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
Query: 301 MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV 360
MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV
Sbjct: 301 MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV 360
Query: 361 VKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVW 420
VKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVW
Sbjct: 361 VKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVW 420
Query: 421 IGMGLSNVISALIGFAWFLKGSWMRRIVE 449
IGMGLSNVISALIGFAWFLKGSWMRRIVE
Sbjct: 421 IGMGLSNVISALIGFAWFLKGSWMRRIVE 449
>pir||E71172 probable damage-inducible protein - Pyrococcus horikoshii
>gi|3256983|dbj|BAA29666.1| (AP000002) 449aa long
hypothetical damage-inducible protein [Pyrococcus
horikoshii]
Length = 449
Score = 791 bits (2021), Expect = 0.0
Identities = 385/449 (85%), Positives = 423/449 (93%)
Query: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
MANIE+ REEILSGSIEKTL+RLAYPLIINNLVQVMYNLTDTFWLAKLGR+ELSAPGTVW
Sbjct: 1 MANIEKAREEILSGSIEKTLIRLAYPLIINNLVQVMYNLTDTFWLAKLGRAELSAPGTVW 60
Query: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP 120
PLLWFM+S+GSGF VAGFAMVSQY+GAGEYKKAS+VAGSLYSLLL LS ++A +GI+ISP
Sbjct: 61 PLLWFMISIGSGFAVAGFAMVSQYVGAGEYKKASKVAGSLYSLLLALSTIIAFLGILISP 120
Query: 121 FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
AL+FIKVTPDVYPYALKYM +F G+P+ALTL+ FNF+LRA GDTKTPVKVNILTI+LN
Sbjct: 121 LALKFIKVTPDVYPYALKYMKIVFGGIPIALTLYAFNFILRAVGDTKTPVKVNILTILLN 180
Query: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
IILDPVFIF L+ GVLGAA+AT+ISEG GS+IGGYLLFTG+V IK+S +DL PD+ LYIK
Sbjct: 181 IILDPVFIFGLNYGVLGAALATVISEGTGSVIGGYLLFTGRVSIKLSLEDLSPDIKLYIK 240
Query: 241 TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
TFKIGLPASI +STNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT
Sbjct: 241 TFKIGLPASISESTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
Query: 301 MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV 360
MVGQN+GAE Y+RA+E+AIKAM TNFLIL+FGT+LF+ FREEIFRFFINDPGI+KESEKV
Sbjct: 301 MVGQNVGAEKYERAKEIAIKAMLTNFLILIFGTMLFIIFREEIFRFFINDPGILKESEKV 360
Query: 361 VKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVW 420
VKYFAASFPFFGIFSAVTNVFASAGHTKKNL LG+IRLWGLRIPLSYYLG TL DSAGVW
Sbjct: 361 VKYFAASFPFFGIFSAVTNVFASAGHTKKNLTLGLIRLWGLRIPLSYYLGKTLKDSAGVW 420
Query: 421 IGMGLSNVISALIGFAWFLKGSWMRRIVE 449
IGMGLSNVI+AL+GF WFLKGSWMRRIVE
Sbjct: 421 IGMGLSNVIAALVGFLWFLKGSWMRRIVE 449
>pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Orsay)
>gi|5458832|emb|CAB50319.1| (AJ248287) dinF related
[Pyrococcus abyssi]
Length = 468
Score = 526 bits (1341), Expect = e-148
Identities = 258/466 (55%), Positives = 339/466 (72%), Gaps = 17/466 (3%)
Query: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
M ++ R EIL G IEKTLL+LA+P+++NNL+QV+YN+TDTFWL KLGR LSAPG W
Sbjct: 3 MEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAW 62
Query: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP 120
P++ +M+LG GF +AGF++V QYIGAG++KKA+R AG+L+SL+L S L A I I+I P
Sbjct: 63 PIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILP 122
Query: 121 FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
AL F+ VTP + PYA +Y I IFAGVPV+ FN ++RA GDTKTPVK++ LT+ LN
Sbjct: 123 LALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLN 182
Query: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
IILDP+FIFI +GVLGAA+AT++S +G+IIG +L +GK G+KI+ +DL+PD Y K
Sbjct: 183 IILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSK 242
Query: 241 TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
++GLP+SIG S NSFGFV+L RII +G V +A Y IT RL NF+ + + GIS AMGT
Sbjct: 243 IVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGT 302
Query: 301 MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV 360
MV QN+GAE Y+RA+ +A + M NF I F L+ FR IF+ F++DP +I ES+ V
Sbjct: 303 MVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIV 362
Query: 361 VKYFAASFPFF-GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-----TTLG 414
++YF S PFF GIF VT VF+SAGHT K++++ ++RLWG RIPLSY G T LG
Sbjct: 363 LEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLG 422
Query: 415 -----------DSAGVWIGMGLSNVISALIGFAWFLKGSWMRRIVE 449
S GV+ GMGLSN ++A+IG AWFLKGSWMRRI++
Sbjct: 423 IRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
>pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii
>gi|3256981|dbj|BAA29664.1| (AP000002) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 511 bits (1302), Expect = e-144
Identities = 247/450 (54%), Positives = 334/450 (73%), Gaps = 8/450 (1%)
Query: 8 REEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMM 67
R+EIL G IE TL +LA+P+IINNL+QV+YN+TDTFWL KLGR+ LSAPG WP++ +M
Sbjct: 23 RKEILEGPIEGTLFKLAWPIIINNLIQVLYNITDTFWLGKLGRAALSAPGVSWPIIGTLM 82
Query: 68 SLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIK 127
+LG GF +AGF++V QYIGAG ++KA+R AG+L+SL++ S A + I+I P+AL F+
Sbjct: 83 ALGIGFTMAGFSIVGQYIGAGNFEKANRSAGALFSLIIFFSTASAILSILILPYALSFMH 142
Query: 128 VTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVF 187
VT + PYA KY + IFAGVP++ TFN ++RA GDT+TPVK++++T+ LNIILDP+F
Sbjct: 143 VTSSIRPYAYKYSLIIFAGVPMSFLFMTFNVLMRAIGDTRTPVKISLITVFLNIILDPIF 202
Query: 188 IFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLP 247
IFIL++GV GAA+AT++S +G++IG +L +G+ G+KISR++L+PD Y K +IGLP
Sbjct: 203 IFILNLGVEGAALATVLSNSVGTVIGVRILTSGRAGLKISRENLKPDWKFYSKIVRIGLP 262
Query: 248 ASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIG 307
+SIG S NSFGFV+L RII +G V +A Y IT RL NF+ + + GIS AM TMV QNIG
Sbjct: 263 SSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMSTMVAQNIG 322
Query: 308 AENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAAS 367
AENY+RA+ +A + M NFLI L+ FR IF+ F+NDP +I ES+ V++YF S
Sbjct: 323 AENYERAKVIAERTMVINFLIAGIAVLIIGIFRVPIFKVFLNDPMVIAESKIVLEYFLIS 382
Query: 368 FPFF-GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-------DSAGV 419
PFF GIF VT F+S+GHT K++I+ ++RLWG RIPLSY G S GV
Sbjct: 383 VPFFNGIFVVVTGAFSSSGHTVKSMIMSMLRLWGFRIPLSYVFGYVPTFAKLFGFTSRGV 442
Query: 420 WIGMGLSNVISALIGFAWFLKGSWMRRIVE 449
+ GMGLSN ++A++G AWFLKGSWMR+I+E
Sbjct: 443 FFGMGLSNFLAAIVGLAWFLKGSWMRKIIE 472
>gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1]
Length = 494
Score = 249 bits (629), Expect = 5e-65
Identities = 153/454 (33%), Positives = 234/454 (50%), Gaps = 21/454 (4%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL 69
++ SG I K L LA P++I NL Q YNL DTFWL + L+A +P+++ ++SL
Sbjct: 18 DLTSGRIGKPLFFLAMPIVITNLFQTAYNLADTFWLGQYNTDALAAISFAFPMVFLLISL 77
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVT 129
G G VAG +V+QY GAG+ ++A A + ++ SLLL GIG L + +
Sbjct: 78 GMGISVAGSVLVAQYTGAGKDEQAEYAASQTVTFSVLASLLLGGIGYFFVEDFLSVVGAS 137
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
V A YM + G+ F ++R GDT TP+ V +++LNI+LDP IF
Sbjct: 138 DAVLRPATSYMQVVALGLAAMFGFAVFIALMRGYGDTITPMLVMFGSVVLNIVLDPFLIF 197
Query: 190 ---------------ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPD 234
+G+ GAAIAT+ S + +G ++F G G++I+ D+ PD
Sbjct: 198 GWTVVENAPLVGTVSFPRLGIQGAAIATVFSRALAFAVGLAIMFRGTRGVEINAADMLPD 257
Query: 235 VNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGI 294
++ + +IGLPASI + + LL I+ T+ A Y I R+ + +F A I
Sbjct: 258 LSYLRRLVRIGLPASIEGTGRALSMNLLLFIVATFPDHIVAAYGIGTRVFSVVFLPAIAI 317
Query: 295 SQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI-----N 349
++ + TM GQN+GA RA A A F +L L+ + E I F+ N
Sbjct: 318 ARGVETMTGQNVGAGKPDRAARAARLAATMLFGVLSVLGLIVYWYPEPIVSVFVGAGQEN 377
Query: 350 DPGIIKESEKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYL 409
+I+ + ++Y A +F F GI A T F AG T + +I L +R PL++
Sbjct: 378 SAQVIEAGSQFLRYVALTFGFIGIARAYTGSFRGAGKTMVAAAISVITLGVIRFPLAWAT 437
Query: 410 GTTLGDSAGVWIGMGLSNVISALIGFAWFLKGSW 443
+LG SAG+W+ +SNVI A+I +AW+ +G+W
Sbjct: 438 IGSLG-SAGIWLSFAVSNVIGAIIAYAWYRRGTW 470
>pir||E72471 probable DNA-damage-inducible protein APE2414 - Aeropyrum pernix
(strain K1) >gi|5106118|dbj|BAA81429.1| (AP000064) 480aa
long hypothetical DNA-damage-inducible protein
[Aeropyrum pernix]
Length = 480
Score = 234 bits (591), Expect = 1e-60
Identities = 153/459 (33%), Positives = 225/459 (48%), Gaps = 23/459 (5%)
Query: 4 IERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLL 63
++R R + G I K +L LA P++ L+ D +L ++ +L+AP PLL
Sbjct: 11 LDRKRTWVTQGPIVKVILALATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAAASPLL 70
Query: 64 WFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLS-------LLLAGIGI 116
W LG G A+VSQ IGA +Y A R A L LML +L A
Sbjct: 71 WLFAGLGIGINTTLSALVSQAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVF 130
Query: 117 VISPFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILT 176
++ F R ++V AL Y + G+P L L FN V+ A+GDT+TP KV+ L+
Sbjct: 131 ILQGFQGRSLEV-------ALAYTLVEAVGMPFMLALFYFNAVMAASGDTRTPFKVSALS 183
Query: 177 IILNIILDPVFIFIL----DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLR 232
ILN+ILDP+ IF L +G +GAA+AT+++ I YLL G G ++
Sbjct: 184 SILNVILDPILIFGLILLPPLGAVGAAVATVLARAAAVSIAFYLLLRGAPGFRVKPS--M 241
Query: 233 PDVNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFAD 292
PD L +IG P S+ S GF+++ I+ G A Y ++ + + + +
Sbjct: 242 PDRQLIGHILRIGGPVSLQRLVVSMGFLVMMGIVARLGAPVVAAYNVSLVIIHIVQSATF 301
Query: 293 GISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPG 352
G + A T+VGQN+GA N RA A +A F +L G + + R + F +
Sbjct: 302 GFNIATATVVGQNLGASNISRAVRAAYTGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEE 361
Query: 353 IIKESEKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-- 410
+ +E+++ A PF G F V +G T LGI RLW LRIP +Y L
Sbjct: 362 VQFYAERMISIVALGMPFLGAFFTAMGVARGSGRTAFISALGIARLWLLRIPAAYTLVYI 421
Query: 411 TTLGDSAGVWIGMGLSNVISALIGFAWFLKGSWMRRIVE 449
+LGD GVW+ M LSN+I+ + AW +W + IV+
Sbjct: 422 YSLGD-MGVWLAMTLSNIIAGTLAIAWVAGRTWAKPIVK 459
>pir||H70158 conserved hypothetical integral membrane protein BB0473 - Lyme
disease spirochete >gi|2688416|gb|AAC66867.1| (AE001152)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 454
Score = 204 bits (514), Expect = 2e-51
Identities = 124/446 (27%), Positives = 220/446 (48%), Gaps = 6/446 (1%)
Query: 6 RTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWF 65
+TRE IL+G++ K L +++P++I N++Q Y+LTD F++ KLG LSA P+ +F
Sbjct: 7 KTRELILNGNLYKVLFLISFPIVITNIIQAFYDLTDMFYVGKLGAMPLSALSLAGPVNFF 66
Query: 66 MMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRF 125
++++ G +++S+ IG G + + SR AG L L +LSL + L
Sbjct: 67 IIAIAMGMATGSISLMSKCIGEGNFSRFSRYAGQLIVLNFVLSLFVTICAFFFIDHLLDL 126
Query: 126 IKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDP 185
+ V ++ + Y +P+ + ++L A G+T + + + I+N ILDP
Sbjct: 127 LGVKGELKELSRVYFYVTIFAIPIMFLSISITYILNAQGETILSMTIVLFANIVNFILDP 186
Query: 186 VFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIG 245
+ IF +MG+ GAA AT+ S+ + + +L + G+KI DL D+ + +G
Sbjct: 187 ILIFSFNMGITGAAWATLFSKLLTVVFYLFLTYRLNYGLKIHLKDLVIDIRSIKEIVNLG 246
Query: 246 LPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQN 305
LP++ G S F + N I+ A Y +TN + +F+F A GI + ++VGQN
Sbjct: 247 LPSTFGQIMVSLSFFIFNYIVIEISPKFLAAYGLTNTIISFLFLPAMGIGTGIISIVGQN 306
Query: 306 IGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFA 365
+GA+ R EV K + IL+ + + ++ I R F ND ++ + +
Sbjct: 307 LGAKKVNRVEEVLKKGFFISLAILLIINSIVIFNKQFILRLFTNDLEVLNYANNYLLLTT 366
Query: 366 ASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSY---YLGTTLGDSAGVWIG 422
+G+ +G TK +I+ IRLW +R+P+ + Y G +I
Sbjct: 367 IGTFGYGLQQVFFGGLIGSGRTKIAMIVIFIRLWLIRLPVVFIFQYFGIMENSLGYAFI- 425
Query: 423 MGLSNVISALIGFAWFLKGSWMRRIV 448
+SN ++ +I A+ W++ I+
Sbjct: 426 --ISNYLAIIILIAFTCTRYWVKPIL 449
>dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 454
Score = 201 bits (505), Expect = 2e-50
Identities = 131/441 (29%), Positives = 226/441 (50%), Gaps = 12/441 (2%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKL-GRSELSAPGTVWPLLWFMMS 68
+ GSI K ++ ++P+ ++NL+Q Y +TD+ W+ L G S L A +++ ++S
Sbjct: 7 DFTEGSITKKMVVFSWPIFLSNLLQTSYQITDSLWVGNLLGASALGALSISATVVFMVLS 66
Query: 69 LGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKV 128
G A ++SQ GA + + +L +L++LL IG + L+ +
Sbjct: 67 FIIGLNGATLTVLSQRQGAKDEAGLKASLNAFVFVLGLLAILLGLIGYFSASSILQLLGT 126
Query: 129 TPDVYPYALKYMIAIFAGVPVALTLHTFNF---VLRAAGDTKTPVKVNILTIILNIILDP 185
++ P A Y+ F G+ L L +NF VLRA GD+++PV+ + +ILNIILDP
Sbjct: 127 PEEILPLAESYLKINFIGI---LFLFGYNFIGTVLRAMGDSRSPVRFIFIAVILNIILDP 183
Query: 186 VFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIG 245
+ I ++G+ GAA ATI+S+G + I G + K G+ + P+ + FK+G
Sbjct: 184 LMIAGFNLGIDGAAYATIVSQGT-AFIYGLIYSVRKAGVPFQIPYV-PEKRYFFVLFKLG 241
Query: 246 LPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQN 305
LPA + T S G + ++ ++G A A + RL + + A + A+ T+ GQN
Sbjct: 242 LPAGLSMITISAGVTAILSVVTSFGEEAVAGFGAAQRLDSLIMLPALTLGSAVNTIAGQN 301
Query: 306 IGAENYKRAREVAIK-AMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYF 364
IGA ++R R A + M + L+ G + F+ + R F+ D + ++
Sbjct: 302 IGANKWERVRATAKQGVMLIIAVTLIIGLITFIG-AQFFIRLFVRDEATVAFGAMYIQTI 360
Query: 365 AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMG 424
A +PF GI + + ++G L+L II W LR PL+Y++ G+ G+ +GMG
Sbjct: 361 AFFYPFLGINFVLNGIVRASGAMFPVLLLNIISFWILRYPLTYWMSDLFGE-RGIALGMG 419
Query: 425 LSNVISALIGFAWFLKGSWMR 445
+ V+S+LI ++ G+W +
Sbjct: 420 FAFVVSSLIATGYYFLGNWRK 440
>sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGION
>gi|7474682|pir||D69939 conserved hypothetical protein
ypnP - Bacillus subtilis >gi|1256651|gb|AAA96645.1|
(L77246) 21% identity with the NADH-dehydrogenase
(ubiquinone) of Caenorhabditis elegans; putative
[Bacillus subtilis] >gi|2634591|emb|CAB14089.1| (Z99115)
similar to hypothetical proteins [Bacillus subtilis]
Length = 445
Score = 184 bits (463), Expect = 1e-45
Identities = 119/437 (27%), Positives = 211/437 (48%), Gaps = 8/437 (1%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKL-GRSELSAPGTVWPLLWFMMS 68
+ G++ K L+ + P+++ N +QV + D+ W+ L G L A ++ ++S
Sbjct: 5 DFTQGNVLKQLVLFSMPIMLGNALQVSFQFIDSLWIGNLLGAKALGAAAVSSTIVLTVLS 64
Query: 69 LGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKV 128
G A ++SQ G + K + + LL LS+ G +S LR +K
Sbjct: 65 FILGLNNATLTILSQQKGKDDIKGMASYINAFVVLLTGLSIGFGAAGFFLSELLLRLLKT 124
Query: 129 TPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFI 188
+ P A Y+ F G+ + + VLRA GD+KTP++ ++LN +L P+FI
Sbjct: 125 PESMIPLAETYLQIQFIGILFLFGYNFISTVLRALGDSKTPLRFIAFAVVLNTVLAPLFI 184
Query: 189 FILDMGVLGAAIATIISEGIGSIIGGYLLFTGK-VGIKISRDDLRPDVNLYIKTFKIGLP 247
+ MG+ GAA +TI+S+GI + G + + K V I R P K+G+P
Sbjct: 185 SVFRMGIAGAAYSTILSQGIAFLYGLFYVIKHKLVPFSIPR---MPKWEESALILKLGIP 241
Query: 248 ASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIG 307
A + + G + + ++ +YG + + RL + + A A+ +M GQNIG
Sbjct: 242 AGLQMMVITGGMMAIMSVVNSYGDHVVSGFGAVQRLDSIITLPAMAAGTAVNSMAGQNIG 301
Query: 308 AENYKRAREVA-IKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAA 366
N KR +A + +A +LV ++++ F + + R FI++P + E+ +K+ A
Sbjct: 302 IGNEKRVGTIARLGVIAVISCMLVIAVMIWV-FGKYLIRLFISEPDAVAFGEQYLKWIAF 360
Query: 367 SFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLS 426
+PF G+ + + +AG + L+L +I W LR P + LG G+ +G+G+S
Sbjct: 361 FYPFIGVNFVLNGIVRAAGAMLQVLVLNLISFWVLRYPFTALFSAWLGQK-GIGLGIGMS 419
Query: 427 NVISALIGFAWFLKGSW 443
+ S+ F ++ G W
Sbjct: 420 FLFSSCAAFLYYRYGRW 436
>pir||G72220 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982278|gb|AAD36768.1|AE001810_7 (AE001810)
conserved hypothetical protein [Thermotoga maritima]
Length = 458
Score = 170 bits (426), Expect = 3e-41
Identities = 127/439 (28%), Positives = 219/439 (48%), Gaps = 19/439 (4%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL 69
++L G K +++L+ P+++ LVQ +YNL D W+A LG L+A G +P+ ++SL
Sbjct: 11 KLLRGDPRKAIVKLSIPMMLAMLVQTIYNLADGIWVAGLGPYALAAIGLFFPVFMVIISL 70
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGI-VISPFA---LRF 125
+G V ++VSQ IG + + A A S+ ++LS+++ + I VI PF L F
Sbjct: 71 AAGIGVGASSVVSQKIGERDKEGADTAA----SVSILLSIVIGFLSIAVILPFISDILIF 126
Query: 126 IKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDP 185
+ AL+Y + + +P+ + + N V R GD K + + +LNI LDP
Sbjct: 127 AGAQGETLRLALEYSVILVYFIPLIMFNNVANGVFRGEGDAKRAMVAITIGSLLNIGLDP 186
Query: 186 VFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIG 245
VFI++ MG+ GAA AT++S + S++ Y +F K R L+ D + + KIG
Sbjct: 187 VFIYVFGMGIRGAAYATVVSIAVSSLLIAYWMFFKKDTYVSFR--LKWDGEILKRILKIG 244
Query: 246 LPASIGDSTNSFGFVLLNRI-IYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQ 304
+PAS+ + S +LN + + G A +T R+ NF G++ A+ ++ G
Sbjct: 245 IPASLAQISMSVAIYVLNVFAVRSGGDYGVAVFTSAWRVINFGTVPLIGMAMAVTSVTGA 304
Query: 305 NIGAENYKRAREVAIKAMATNF---LILVFGTLLFMAFREEIFRFFINDPGIIKESEKVV 361
G N ++ + A+ F L ++F L+F + +F + + + K +
Sbjct: 305 AFGERNGEKLETAHLYAVKLGFFVGLAVMFTILIFAPYIARLFTYSQEGEKLYSDLVKAL 364
Query: 362 KYFAASFPF--FGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAG 418
+ + P FG+F+ +++F G K+LI+ I+R +++ S+ L G
Sbjct: 365 RILSLFLPGVPFGMFT--SSMFQGVGQGLKSLIVTIMRTVIMQVVFSWLFVFVLRIGLVG 422
Query: 419 VWIGMGLSNVISALIGFAW 437
VW G+ L N SA I F W
Sbjct: 423 VWWGIVLGNTTSAFITFNW 441
>dbj|BAB05882.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 464
Score = 165 bits (413), Expect = 1e-39
Identities = 121/430 (28%), Positives = 214/430 (49%), Gaps = 9/430 (2%)
Query: 9 EEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLA-KLGRSELSAPGTVWPLLWFMM 67
E + + +I K L L+ P +I V +YN+ DT +++ +G ++ +P++ MM
Sbjct: 8 ERLGTEAIPKLLRSLSIPAMIGMFVMALYNVVDTIFISYAVGIEGVAGVTIAFPIMMIMM 67
Query: 68 SLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIK 127
S+ + G +++S+ +G ++A++V G++ +++L+LS++ + AL+
Sbjct: 68 SMAGALGIGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFG 127
Query: 128 VTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVF 187
T YA Y+ I G N ++R+ G+ + I+ +LNI+LD +F
Sbjct: 128 ATSVTQGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLF 187
Query: 188 IFILDMGVLGAAIATIISE-GIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGL 246
IF L+MGVLGA+IAT+I++ + ++ Y L TGK + + DLR ++ + +GL
Sbjct: 188 IFGLNMGVLGASIATVIAQASVTGLVLRYFL-TGKSTLSLHWSDLRMKGSVIKEVCLVGL 246
Query: 247 PASIGDSTNSFGFVLLNRIIYTYGTVAF-ATYTITNRLTNFMFAFADGISQAMGTMVGQN 305
PA + S+ S + +N ++ +G+ + + + R+ F+ GI QAM +VG N
Sbjct: 247 PAFVQQSSASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMPMMGIMQAMQPIVGYN 306
Query: 306 IGAENYKRAREVAIKA--MATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKY 363
GA+ Y R RE + +AT F I +F L M F E + R F D +I+ +
Sbjct: 307 YGAKQYSRLRETVMLGFKVATIFSIGIFA--LLMLFPEALLRVFTADREVIQAGVSAMHI 364
Query: 364 FAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGM 423
G ++ S G K+ LIL + R IPL L G S GVW
Sbjct: 365 LFCVTFLIGAQIVAGGLYQSLGKPKQALILSLSRQIIFLIPLVLILPHIFGLS-GVWWAF 423
Query: 424 GLSNVISALI 433
+++V+S ++
Sbjct: 424 PIADVLSFIL 433
>gi|11499066 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451040|pir||F69433 conserved hypothetical protein
AF1471 - Archaeoglobus fulgidus
>gi|2649097|gb|AAB89777.1| (AE001001) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 447
Score = 164 bits (412), Expect = 1e-39
Identities = 117/436 (26%), Positives = 211/436 (47%), Gaps = 16/436 (3%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL 69
E+L+G +K +L+L+ P++++NL+ +YNL D W+A LG LSA G +P+ + +++
Sbjct: 5 EVLTGDPKKAILKLSAPMVVSNLIFTLYNLVDGIWVAGLGPDALSAVGLFFPIFFVFIAI 64
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVT 129
G V + VS+ IGA Y A A ++ +++S+ + + +V + F+
Sbjct: 65 SFGLSVGANSAVSRRIGAKRYDAACVAATLAVAMGILVSIPMT-LSVVFLNGVMVFLGAD 123
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
++ A+ Y + G + + +L G+ + + N +LN++LDP+FI+
Sbjct: 124 GEILRLAVDYGSIMVLGSVFLVFSNVSAGILNGEGNARMAMYANAAGSLLNMVLDPIFIY 183
Query: 190 ILDMGVLGAAIATIISEGIGSIIGGYLLFTGK--VGIKISRDDLRPDVNLYIKTFKIGLP 247
+L G+ GAAIA++IS + SI+ + +G+ V +++ +L +L ++G+P
Sbjct: 184 LLGYGIAGAAIASVISMALSSIVFSFWFLSGRSYVRFRVAGWNLPTVFDL----LRVGMP 239
Query: 248 ASIGDSTNSFGFVLLNR-IIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNI 306
AS+ T S F+L+NR +I T G+ A YT RL F F G+S A+ + G
Sbjct: 240 ASLSMLTMSVAFMLINRVVIETGGSEGLAAYTSAWRLIQFGFVPLFGVSAALTAVSGAAY 299
Query: 307 GAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVK---- 362
GA N ++ E + + L +AF +I F E++V+
Sbjct: 300 GARNPRKIGESLNYTVKLLLAVDAAILALMVAFAPQIALIFTYTEVSAVMYEEIVRTIRI 359
Query: 363 -YFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWI 421
F F G+ S+ VF G +++ + ++R ++ L Y L G GV +
Sbjct: 360 AAFVLLFAPLGVSSSA--VFQGMGKGERSFAITVLRAIVFQVSLCYVLAVPFGFD-GVLL 416
Query: 422 GMGLSNVISALIGFAW 437
G L + GF+W
Sbjct: 417 GFVLGEALGCFTGFSW 432
>pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748)
conserved hypothetical protein [Thermotoga maritima]
Length = 464
Score = 162 bits (407), Expect = 5e-39
Identities = 119/439 (27%), Positives = 206/439 (46%), Gaps = 8/439 (1%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
I K L++LA P + N++Q+++ + DT +L +S G + W + + +
Sbjct: 18 IRKELIKLALPAMGENVLQMLFGMADTAFLGHYSWKAMSGVGLSNQVFWVVQVVLIAASM 77
Query: 76 AGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPY 135
++ IGAG K +A + L + ++L + + F + ++
Sbjct: 78 GATVTIANAIGAGNRKAVRSLAWNSVFLAIFTGVILTALTPLSDVLINIFPNLEGEIESS 137
Query: 136 ALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----IL 191
A +Y+ I +G + F+ +LR AGDT+TP+ V LT LNI LD IF
Sbjct: 138 AKEYLKVILSGSMGFSIMAVFSAMLRGAGDTRTPMIVTGLTNFLNIFLDYAMIFGKFGFP 197
Query: 192 DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIG 251
+MGV GAA+ATI+S +G+ I Y++F + ++ + + P + + ++G P +I
Sbjct: 198 EMGVRGAAVATILSRFVGAGILTYVIFK-REEFQLRKGLVPPKWSSQKEILRVGFPTAIE 256
Query: 252 DSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENY 311
+ S G ++ I+ G A+A + I + + F A GIS A+ T+VG+ G N
Sbjct: 257 NFVFSTGVLMFANILLIAGAEAYAGHRIGINVESLSFMPAFGISVAITTLVGRYNGMGNK 316
Query: 312 KRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFF 371
+ V + + L V ++ F E + R F +DP II+ S+ VK F
Sbjct: 317 EHVLGVIRQGWILSLLFQVTVGIIIFLFPEPLIRIFTSDPQIIEISKLPVKIIGLFQFFL 376
Query: 372 GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGT--TLGDSAGVWIGMGLSNVI 429
I S + G+T +I+ I +W R+P+++ + LG G WIGM +
Sbjct: 377 AIDSTMNGALRGTGNTLPPMIITFISIWTARLPVAFVMVKYFQLG-LLGAWIGMIADIIF 435
Query: 430 SALIGFAWFLKGSWMRRIV 448
+ + +FL G W +R V
Sbjct: 436 RSTLKLLFFLSGKWEKRAV 454
>pir||A82049 conserved hypothetical protein VC2671 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657264|gb|AAF95812.1|
(AE004332) conserved hypothetical protein [Vibrio
cholerae]
Length = 460
Score = 155 bits (387), Expect = 1e-36
Identities = 113/448 (25%), Positives = 222/448 (49%), Gaps = 15/448 (3%)
Query: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
+A + + +LS I L ++ P+I + +M+NL DTF+++ LG L+A +
Sbjct: 9 VAQLMHDKHGLLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTF 68
Query: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVA--GSLYSLLLMLSLLLAGIGIVI 118
P+ + + + G V + + +G G+ ++A+RV+ G L +LLL+ + G+ + I
Sbjct: 69 PVTFAVNCITMGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGL-LTI 127
Query: 119 SPFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTII 178
P L + + ++ P +YM+ + +P+ + N +RA GDTKTP K+ +L +
Sbjct: 128 EPLFL-LLGASHELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGL 186
Query: 179 LNIILDPVFIF----ILDMGVLGAAIATIISEGIGSIIGG-YLLFTGKVGIKI-SRDDLR 232
+N LDP+ IF ++G+ GAAIA+ S +G++IG YLL + + I S LR
Sbjct: 187 INGALDPLLIFGYGPFPELGIQGAAIASAFS-WLGALIGSLYLLIKREKLLAIPSLPHLR 245
Query: 233 PDVNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFAD 292
D + + KIG PA++ + N LL ++ ++GT A A Y T R+ + +
Sbjct: 246 DD---WQQILKIGTPAALSTAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLM 302
Query: 293 GISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPG 352
++ A+ + QN+GA+N R+ ++ + L + ++ + + F +
Sbjct: 303 SLTSALTPFMAQNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMVPLSIPLAALFSQEQA 362
Query: 353 IIKESEKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTT 412
+ + S+ F G+ + + + K +RL+ +P + ++G
Sbjct: 363 VRDLLWHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAA-WIGGR 421
Query: 413 LGDSAGVWIGMGLSNVISALIGFAWFLK 440
L + G++IG+ + N++ L+G+ + L+
Sbjct: 422 LYNIEGLFIGIAVGNILGGLLGYLYALR 449
>pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi (strain Orsay)
>gi|5457798|emb|CAB49288.1| (AJ248284) DAMAGE-INDUCIBLE
PROTEIN [Pyrococcus abyssi]
Length = 463
Score = 151 bits (378), Expect = 1e-35
Identities = 126/461 (27%), Positives = 205/461 (44%), Gaps = 35/461 (7%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
I K L LA+P I+ N+ Q + NL DT + + L A G + WFM +
Sbjct: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
Query: 76 AGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPY 135
A+V++ +G +++ASR+A + ++ + + G+ + L+ + +V
Sbjct: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
Query: 136 ALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----IL 191
A Y+ +F P+ F LR AGDTKTP+K+NIL ++N +LD + +F
Sbjct: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
Query: 192 DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRD-DLRPDVNLYIKTFKIGLPASI 250
+G +GAA A+ I I ++G YL T K+ +K D LR D+ K +IG P +
Sbjct: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDI--IEKILRIGTPTML 241
Query: 251 GDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
SF L I+ +G +A + + I R+ + + A G S A +VGQN+GA+
Sbjct: 242 ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKK 301
Query: 311 YKRAREVAIKA--MATNFL-ILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYF--- 364
+ A +A M T F+ + F ++F + E F NDP V Y
Sbjct: 302 PEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPF-LSHNDPNYQAVKSLAVIYLIIV 360
Query: 365 -AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-------TTLGDS 416
+ P G+ ++ AG TK L + + RI +Y LG ++G
Sbjct: 361 GISEIP-LGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPF 419
Query: 417 A------------GVWIGMGLSNVISALIGFAWFLKGSWMR 445
WIGM L ++A + + F +G W +
Sbjct: 420 TFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
>sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir||E64388 conserved
hypothetical protein homolog MJ0709 - Methanococcus
jannaschii >gi|1591425|gb|AAB98703.1| (U67517) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 450
Score = 148 bits (369), Expect = 2e-34
Identities = 107/439 (24%), Positives = 213/439 (48%), Gaps = 20/439 (4%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL 69
EIL +K ++ ++ P+I+ ++ +Y+L D+ W++ LG L+A G +P+L + ++
Sbjct: 5 EILLDDPKKAVIEVSKPIIVATFIESIYSLVDSIWVSGLGADALAAVGASFPILISIYAV 64
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFA-----LR 124
G + + +++ +GA ++A +VA ++++L L +AGI +I+ +
Sbjct: 65 SWGLSIGISSGIARRVGAKNKEEADKVAN--HAIILAL---IAGILYIIAVYPNLDTLFS 119
Query: 125 FIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILD 184
+ D A+KY + G + + R G+TK + +++ + NIILD
Sbjct: 120 LMGTYGDCKSLAIKYSSILVLGTVIFTICDALYGIFRGEGNTKIVMIASVIGTLTNIILD 179
Query: 185 PVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGK---VGIKISRDDLRPDVNLYIKT 241
P+FI++L++G+ GA+ AT+I+ I +I Y LF K V +K+S+ +PD+ +
Sbjct: 180 PIFIYMLNLGISGASYATLIAIIISLLILAYELFIKKSCYVTVKLSK--FKPDLKIIADL 237
Query: 242 FKIGLPASIGDSTNSFGFVLLNRIIYTYG-TVAFATYTITNRLTNFMFAFADGISQAMGT 300
++G+P+++ + T + F ++ II G + A YT R+T F F G++ +
Sbjct: 238 IRVGIPSALIEITVAVSFFIMTSIIMMVGDSRGLAVYTGALRITEFGFIPMLGLASGATS 297
Query: 301 MVGQNIGAENYKRAREV---AIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKES 357
++G GA ++++ + IK +I+V +L +F + GI +E
Sbjct: 298 VIGATYGARSFEKLKTAYFYTIKIGVLMEIIIVALIMLLSPILAYLFTYTKTSMGIHEEL 357
Query: 358 EKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DS 416
K ++ F + +F G +K+LI+ I R I +Y LG
Sbjct: 358 VKALRIVPLYLLFTPFILTTSAMFQGIGKGEKSLIISIFRSLICHISYAYLFAVILGLGM 417
Query: 417 AGVWIGMGLSNVISALIGF 435
G++ G+ + + + F
Sbjct: 418 FGIYSGLVVGEFTAGIFAF 436
>pir||G71191 probable DNA damage-inducible protein - Pyrococcus horikoshii
>gi|3258243|dbj|BAA30926.1| (AP000007) 463aa long
hypothetical DNA damage-inducible protein [Pyrococcus
horikoshii]
Length = 463
Score = 147 bits (368), Expect = 2e-34
Identities = 124/458 (27%), Positives = 199/458 (43%), Gaps = 33/458 (7%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
+ + L LA+P I+ N+ Q + NL DT + + L A G + WFM +
Sbjct: 4 LRRRLWELAWPAIMGNISQTLLNLVDTMIVGHVSAVALGAVGLGGQVSWFMFPIMMAIST 63
Query: 76 AGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPY 135
A+V++ +G G Y++ASR+ + ++ + + GI + LR + +V
Sbjct: 64 GTLALVARRVGEGNYREASRITEQSMYIAFLIGIPVMLFGIFLGDEVLRIMGAKGEVLDI 123
Query: 136 ALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----IL 191
A Y+ +F P+ F LR AGDTKTP+K+NIL ++N ILD + +F
Sbjct: 124 AYSYLKILFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINGILDYLLVFGKLGFP 183
Query: 192 DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIK-ISRDDLRPDVNLYIKTFKIGLPASI 250
+G +GAA A+ I ++G YL K+ +K + LR N+ K +IG P +
Sbjct: 184 KLGPVGAAWASGIGISSSFLVGLYLFLAHKLILKPVLEFKLR--FNIIEKILRIGTPTML 241
Query: 251 GDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
SF L I+ +G +A + + I R+ + + A G S A +VGQ +GA
Sbjct: 242 ERGLFSFYNFLYVSIVARFGEIALSAHYIGLRVESIAYMPAFGFSIATSALVGQKLGARK 301
Query: 311 YKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI--NDPGIIKESEKVVKYF---- 364
A +A+ + + +AF + F+ NDP V Y
Sbjct: 302 PDEAELTVKEALKMTTAFMSTMAFILVAFPGYLTEPFLSHNDPNYSAVKSLAVIYLIIVG 361
Query: 365 AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-------TTLG--- 414
+ P G+ ++ AG TK L + + RI +Y LG T+G
Sbjct: 362 ISEIP-LGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRIIPAYLLGFGFTVPSFTIGSLT 420
Query: 415 ------DSAGV---WIGMGLSNVISALIGFAWFLKGSW 443
+ GV WIGM L I+A + + F +G W
Sbjct: 421 FPGFKFEGLGVIAAWIGMSLETFITAGLFWIVFRRGKW 458
>pir||C69140 conserved hypothetical protein MTH314 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621368|gb|AAB84820.1| (AE000816) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 452
Score = 145 bits (361), Expect = 1e-33
Identities = 114/435 (26%), Positives = 196/435 (44%), Gaps = 10/435 (2%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL 69
EI+ G + L++L+ PLI+ L+ +YNL D W+A LG L+A G V P+ ++ L
Sbjct: 8 EIIRGDPRRALIKLSGPLIVAMLLTSIYNLVDAVWVAGLGGEALAAIGFVTPIYMILVGL 67
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVT 129
+G + VS+ +GAG+ + + A + L +S++L I ++ L +
Sbjct: 68 SNGLGAGAASSVSRCLGAGDEEGMNNSASHTIIITLAVSIILTVIIEILLRDILLSLGAA 127
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
+ P A++Y +FAG L +LR+ GD + P+ L+ +LN++LDP+ I+
Sbjct: 128 GALKP-AMEYGSVVFAGTLFTLFPGAAYGILRSEGDARRPMYAMGLSAVLNMVLDPILIY 186
Query: 190 ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPAS 249
G+ GAA AT+IS+ + S++ Y G+ I R D + + +PAS
Sbjct: 187 TAGWGIAGAAWATVISQLLVSLLIIYWFLAGRTFTSIGWSHFRADRGVVWSILSVTIPAS 246
Query: 250 IGDSTNSFGFVLLNRIIYTY-GTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGA 308
S LLN I+ + GT A A Y+ R+ ++ A+ ++ G G+
Sbjct: 247 AEFLVMSMVTALLNWILTSVAGTSAVAVYSAGWRIVMLAIVPVISVATALVSVSGVAYGS 306
Query: 309 ENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASF 368
N++ ++ LI L I F + ++ +
Sbjct: 307 RNFENLEVAHGYSIRLGLLIAGATAALTFVLAPWIAWIFSYSQASSHLAPRITGFLRVIC 366
Query: 369 PFF-----GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIG 422
F+ GI S ++F AG +L+L +IR L +Y L TLG GVW G
Sbjct: 367 LFYIFLPPGIMSG--SIFQGAGRGMTSLMLSVIRQVLLVAVFAYLLAVTLGLGEVGVWWG 424
Query: 423 MGLSNVISALIGFAW 437
+ ++ +L+ + W
Sbjct: 425 VVAGDIGGSLVAYLW 439
>pir||A69905 conserved hypothetical protein yoeA - Bacillus subtilis
>gi|2634220|emb|CAB13720.1| (Z99113) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis] >gi|2634231|emb|CAB13730.1| (Z99114) similar
to hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 463
Score = 139 bits (348), Expect = 5e-32
Identities = 99/433 (22%), Positives = 202/433 (45%), Gaps = 9/433 (2%)
Query: 15 SIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSLGSGF 73
S+ +++ PL+++N++Q + L + + LG ++A + +PL + ++S G
Sbjct: 17 SVWRSMSLFLVPLLLSNVLQSVGQLVGMMAVGRWLGVDAVAAVSSFFPLFFLLISFTIGI 76
Query: 74 VVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVY 133
++ Q GA ++ V G+ + +L ++LA IG + + LR + +V
Sbjct: 77 GSGSSILIGQAYGAKNEERLKAVVGTTLTFTFLLGVVLAVIGSIFTLDILRLMGTPENVI 136
Query: 134 PYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFIL-- 191
+ Y +F +P + LR GD+KTP I++ ++NI L PV I +
Sbjct: 137 HVSANYARILFYAMPFMFLYFAYTTFLRGTGDSKTPFYTLIVSTVINIALLPVLILGMFG 196
Query: 192 --DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGI---KISRDDLRPDVNLYIKTFKIGL 246
+G+ G+A AT+IS ++ L K + K R L+ D L + ++G+
Sbjct: 197 FPKLGIYGSAYATVISTIATFLVLMVYLRKRKHPLQFDKTVRRYLKMDKELLVLLLRLGV 256
Query: 247 PASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNI 306
PASI S + + + YG+ A A Y + N++ +++ A + A+ Q+I
Sbjct: 257 PASINMILVSLSEIAVISFVNHYGSNATAAYGVVNQVASYVQMPAVSLGIAVSIFAAQSI 316
Query: 307 GAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAA 366
GA + R ++V + N++I +L F +I F+ + + + +++
Sbjct: 317 GANEFDRLKQVIRVGIWLNYIIGGVLIILIYVFSHQILSLFLTEQESLYIAHRLLMTTLW 376
Query: 367 SFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-TTLGDSAGVWIGMGL 425
S+ FG ++ ++G ++ I +WG+ +P+++ L T + GVW+G
Sbjct: 377 SYLLFGNAQIISATMRASGTVLWPTVISIFAIWGVEVPVAFVLSHYTKLEILGVWVGYPA 436
Query: 426 SNVISALIGFAWF 438
+ +S L+ + ++
Sbjct: 437 AFAVSLLLIYGYY 449
>gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Halobacterium sp.
NRC-1]
Length = 469
Score = 136 bits (340), Expect = 4e-31
Identities = 110/445 (24%), Positives = 197/445 (43%), Gaps = 14/445 (3%)
Query: 7 TREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFM 66
+R+EI GS+ + LL L PL++ V V+ + D FWL ++ R+ +SA G V PL+ +
Sbjct: 5 SRDEITGGSLPRALLVLTAPLVVQQYVVVVQQIVDVFWLGRVSRNAVSAVGLVAPLIGLL 64
Query: 67 MSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFI 126
S + +V+Q++GA + A L+ +LLLA + + ++P + +
Sbjct: 65 ALATSVATIGCRVLVAQHVGADDAAAARSTGFHATVLVGAANLLLAVVVLWLAPDLVGVL 124
Query: 127 KVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPV 186
V Y+ G T GD++ + +N++ ++ N++LDP
Sbjct: 125 LSDEAVIQLGATYLTVTTVGRVFGGMSDTIESGFVGWGDSRMSMLINVVAVLTNVVLDPF 184
Query: 187 FIF------ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
+ G+ GAA+AT I G + L I R DL +
Sbjct: 185 LVVGWQLPGFAGYGIFGAALATAIGYVAGFTVAVAGLGVDSTSFTIGRADLGVSRDTVRS 244
Query: 241 TFKIGLPASIGDSTNSFGFVLLNRIIY-TYGTVAFATYTITNRLTNFMFAFADGISQAMG 299
+G+P + ++ +L+ I+ G+ A YTI R+ F A + A+
Sbjct: 245 LLSVGVPHAGQEAGRQIARLLVVAIVAGVAGSAGLAAYTIGARIATVAFVPAAAVGSAVS 304
Query: 300 TMVGQNIGAENYKRA-REVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGI-IKES 357
++VGQN+GA N RA R + A AT + V G + + + F GI + +
Sbjct: 305 SIVGQNVGAGNPDRATRATWLAAGATTAGMAVLGVAQYSSPATIVSVFAPTFSGIELTYT 364
Query: 358 EKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPL----SYYLGTTL 413
++ A + FG+ + F AG T +++ +++ WG+R+P+ +Y + ++
Sbjct: 365 VAYLQILAVGYWAFGLIYPIQGGFNGAGKTTVSMVATLLQYWGVRLPVAALGAYVVVFSV 424
Query: 414 GDSAGVWIGMGLSNVISALIGFAWF 438
A W + SNV A+ A+F
Sbjct: 425 PVHAAFW-AITASNVACAVGVTAYF 448
>pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeolicus
>gi|2982882|gb|AAC06502.1| (AE000675) hypothetical
protein [Aquifex aeolicus]
Length = 472
Score = 135 bits (336), Expect = 1e-30
Identities = 107/430 (24%), Positives = 184/430 (41%), Gaps = 9/430 (2%)
Query: 15 SIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFV 74
S+ K +++L+ P+I+ NL+ + N+ ++ + S ++A G LLWF+ SL +
Sbjct: 14 SVIKKVVKLSIPIIVVNLLYTVENMISMILVSSISPSAVAATGFSLSLLWFIYSLMALSY 73
Query: 75 VAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYP 134
+++Q++GA + + G S L+ L L G V+ F ++ + + V
Sbjct: 74 SGTNILIAQFVGAKKDPSPILINGLFLSFLISLPLFFYGKDFVL--FLMKVLGASETVRS 131
Query: 135 YALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----I 190
A +Y+ IF +P+ +TF AGDTKTP+KV I+ + +I I +
Sbjct: 132 LAKEYLTPIFWFIPIGFLTNTFYGAYNGAGDTKTPMKVAIIMNLTHIGTAYTLINGKFGL 191
Query: 191 LDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASI 250
+GV GA ISE + I +LL K + LR + L K ++G P ++
Sbjct: 192 PKLGVEGAGWGIAISEILAFFIYTFLLIFFKKPFPLH---LRLEPKLLFKMVRLGTPTAL 248
Query: 251 GDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
+ + F + + +G A + I R+ + F G+ A T+ GQN GA N
Sbjct: 249 ERAITTLSFNVFVGFLAKFGDKVLAAHQIGLRIESISFMIGFGVMIASTTLAGQNYGARN 308
Query: 311 YKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPF 370
Y+ + L++ L+ + F + F DP +I+ + ++ S P
Sbjct: 309 YRGMVHAVNTSAHFTALVMSLTGLILILFPHYLVYPFSRDPEVIEWASYYLQIVGISQPA 368
Query: 371 FGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLSNVIS 430
S + G T L + I W RI SY+L + W M +
Sbjct: 369 MAYASIYSGALKGMGKTHIPLFVNISSFWLFRIIPSYFLLKVIHSPLVPWGFMTFETAVR 428
Query: 431 ALIGFAWFLK 440
AL + F K
Sbjct: 429 ALFYYTVFKK 438
>dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 452
Score = 132 bits (328), Expect = 1e-29
Identities = 113/433 (26%), Positives = 196/433 (45%), Gaps = 10/433 (2%)
Query: 19 TLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGF 78
TL L +P+ I L+ ++ DT L++ ++A G +L ++ + GFV G
Sbjct: 10 TLFALTWPIFIEILLHMLMGNADTLMLSQYSDDAVAAVGVSNQILAVIIVM-FGFVATGT 68
Query: 79 A-MVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYAL 137
+ +V+Q++GA E + A +VA L+ ++L + I P L+ +++ + A
Sbjct: 69 SILVAQHLGAKERENAGKVAVVSIGANLIFGIVLGLLLIAFGPPILKAMQLDDSLLQEAT 128
Query: 138 KYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDM 193
Y+ + V + T +LR+ TK + V I ILN+I + +FIF I +
Sbjct: 129 LYLQIVGGFSVVQSLIMTAGAILRSHSFTKDVMYVTIGMNILNVIGNYLFIFGPFGIPVL 188
Query: 194 GVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLR--PDVNLYIKTFKIGLPASIG 251
GV G A++T++S IG + LL+ G L+ P V L KIG+P++
Sbjct: 189 GVTGVALSTVVSRTIGLFVIAILLYKRIRGELPFAYLLKRFPRVELR-NLLKIGIPSAGE 247
Query: 252 DSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENY 311
+ + +++ I GT A T T L F+F FA I Q ++G +GA+
Sbjct: 248 QLSYNASQLVITYFIAMMGTEALTTKVYTQNLMMFVFLFAVAIGQGTQILIGHQVGAKQI 307
Query: 312 KRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFF 371
+ A +++ + V ++F AF + F ++P I+ ++ P
Sbjct: 308 QAAYVRCFRSLWIAMTVSVSMAVVFFAFSTPLLGIFTDNPDILSLGTTLLLLTIILEPGR 367
Query: 372 GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIGMGLSNVIS 430
V + +AG K + L I+ +WG+ +P++Y LG LG GVWI
Sbjct: 368 ACNLVVISSLRAAGDVKFPVYLAIVSMWGIAVPIAYLLGLPLGLGLIGVWIAFIADEWFR 427
Query: 431 ALIGFAWFLKGSW 443
L+ + KG W
Sbjct: 428 GLLMIWRWRKGKW 440
>emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae]
Length = 456
Score = 131 bits (325), Expect = 2e-29
Identities = 102/428 (23%), Positives = 192/428 (44%), Gaps = 20/428 (4%)
Query: 10 EILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPL----LW 64
+++ G I +LL +P++++N+ Q +YN D + + LG+ L+A G + +
Sbjct: 8 DLIHGPILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVG 67
Query: 65 FMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALR 124
F + +G+G + ++++Y GA + K + + L +LS+L+ +G + L+
Sbjct: 68 FTLGVGNGMGI----VIARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQ 123
Query: 125 FIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILD 184
++ ++ P + +Y+ I V V+ + F +LR+ GD+ + I + ++N++LD
Sbjct: 124 YLDTPAEILPQSYQYISMIVTCVGVSFAYNLFAGLLRSIGDSLAALGFLIFSALVNVVLD 183
Query: 185 PVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKI 244
FI L +GV A +ATIIS+G+ +++ Y + + + D +LY +
Sbjct: 184 LYFITQLHLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADLLEQ 243
Query: 245 GLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQ 304
GL + S S G V+L + T+G V + T R+ F IS +M T Q
Sbjct: 244 GLAMGLMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQ 303
Query: 305 NIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI---NDPGIIKESEKVV 361
N+GA+ R + + VF +F+ F F+ D +I+ +
Sbjct: 304 NLGAKRPDRIVQGLRIGSRLSISWAVF-VCIFLFFASPALVSFLASSTDGYLIENGSLYL 362
Query: 362 KYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWG------LRIPLSYYLGTTLGD 415
+ + +P + N G L+ I L G L IP + Y G L +
Sbjct: 363 QISSTFYPILSLLLIYRNCLQGLGQKILPLVSSFIELIGKIVFVVLIIPWAGYKGVILCE 422
Query: 416 SAGVWIGM 423
+W+ M
Sbjct: 423 PL-IWVAM 429
>pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp
>gi|971571|emb|CAA62487.1| (X91006) orf B [Pyrococcus
sp.] >gi|1586540|prf||2204238A dinF-like gene
[Pyrococcus sp.]
Length = 363
Score = 125 bits (311), Expect = 1e-27
Identities = 97/330 (29%), Positives = 154/330 (46%), Gaps = 11/330 (3%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWP--LLWFMMSLGSGF 73
I K L +LA+P I N+ Q + NL DT + + L VW + WFM +
Sbjct: 4 IRKRLWKLAWPAIAGNISQTLLNLVDTMIVGHVSAVALGC-SWVWEGMVSWFMFPIMMAV 62
Query: 74 VVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVY 133
A+V++ +G Y +ASRVA + +L + + GI LR + +V+
Sbjct: 63 STGTLAVVARRVGERNYDEASRVAEQSMYIAFILGIPVMLFGIFFGDDILRIMGAKGEVF 122
Query: 134 PYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF---- 189
A Y+ +F P+ F LR AGDTKTP+ +NIL ++N +LD + +F
Sbjct: 123 EIAYAYLRVLFLFYPIRFVGFAFFSSLRGAGDTKTPMLLNILMNVVNAVLDYLLVFGKLG 182
Query: 190 ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPAS 249
MG +GAA A+ I I ++G YL ++ +K + LR ++ K +IG P
Sbjct: 183 FPRMGPVGAAWASGIGITIAFLVGLYLFIAHRLVLKPVLE-LRIRWDIVEKILRIGTPTM 241
Query: 250 IGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGA- 308
+ SF L I+ +G +A + + I R+ + + A G S A +VGQ++GA
Sbjct: 242 LERGLFSFYNFLYMSIVTRFGKIALSAHHIGLRVESIAYMPAFGFSIATSALVGQSLGAK 301
Query: 309 --ENYKRAREVAIKAMATNFLILVFGTLLF 336
E R + AIK ++ F + F
Sbjct: 302 KPEQRGRVVKEAIKMSPAFMSVMAFVLVAF 331
>pir||G82392 conserved hypothetical protein VCA0989 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658430|gb|AAF96885.1|
(AE004425) conserved hypothetical protein [Vibrio
cholerae]
Length = 444
Score = 122 bits (304), Expect = 7e-27
Identities = 103/448 (22%), Positives = 201/448 (43%), Gaps = 31/448 (6%)
Query: 13 SGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSG 72
+ S+ K L ++ +P++ L + + L D+ ++ +LG L+A G P+ ++ + G
Sbjct: 7 TSSLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVG 66
Query: 73 FVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIK----- 127
+A A++S+ IGAG+ + A ++ G L +++ GIG+ + L ++
Sbjct: 67 LGIATTAVISRAIGAGKTEYAKQLGG--------LVIVIGGIGVALIALVLYLLRQPLLG 118
Query: 128 ---VTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILD 184
V+ Y + A L+ + V RA G+T P + ++T +LN+ILD
Sbjct: 119 LLGAPETVFAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILD 178
Query: 185 PVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKI 244
P+FIF D+G+ GAAIATII+ G+G I KV + D+N+ +
Sbjct: 179 PIFIFTFDLGIDGAAIATIIAFGVGIAI-----VAPKVAQRQWTSYQWQDLNISQSLTAL 233
Query: 245 GL---PASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTM 301
G PA + + +++ ++GT A A + + +R F ++ ++ M
Sbjct: 234 GHIMGPAMLSQLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPM 293
Query: 302 VGQNIGAENYKRAREVAIKA--MATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEK 359
+G+ +GA+ R++ A F +L+ L+ F + ++ + +
Sbjct: 294 IGRMLGAKEITHIRQLVRIACQFVLGFQLLI--ALVTYVFATPLAELMTSETEVSQILNL 351
Query: 360 VVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGV 419
+ S GI + +V + G + L + +RL+ +P +LG G+
Sbjct: 352 HLVIVPISLGALGICMLMVSVANALGKSYVALTISALRLFAFYLP-CLWLGAHFYGIEGL 410
Query: 420 WIGMGLSNVISALIGFAWFLKGSWMRRI 447
+IG + N+I+ AW +R++
Sbjct: 411 FIGALVGNIIAGWA--AWLAYQKALRQL 436
>pir||H69837 conserved hypothetical protein yisQ - Bacillus subtilis
>gi|1934838|emb|CAB07959.1| (Z93940) unknown [Bacillus
subtilis] >gi|2145382|emb|CAA70645.1| (Y09476) YisQ
[Bacillus subtilis] >gi|2633417|emb|CAB12921.1| (Z99109)
alternate gene name: yucE~similar to hypothetical
proteins [Bacillus subtilis]
Length = 455
Score = 122 bits (302), Expect = 1e-26
Identities = 100/435 (22%), Positives = 199/435 (44%), Gaps = 9/435 (2%)
Query: 19 TLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGF 78
+L L +P+ I + + DT L++ + ++A G +L ++ + S
Sbjct: 20 SLFSLTWPIFIEVSLYMFMGNADTLMLSQYSDNSVAAVGVSNQILNLIIVMFSFIATGTT 79
Query: 79 AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALK 138
++SQ++G+ + K+A VA +SL ++ + + L + ++ + P A K
Sbjct: 80 VIISQFLGSRQKKEAMEVAYVSIGANFFISLAISAVVFFAAVPLLHMMGLSDALMPDA-K 138
Query: 139 YMIAIFAGVP-VALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILD----M 193
+ + G+ + + TF+ +L++ G TK + V I ILNI + V IF L +
Sbjct: 139 VFLQVVGGLSFIQALIMTFSAILKSYGYTKDTMFVTIGMNILNIAGNFVVIFGLFGFPVL 198
Query: 194 GVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYI-KTFKIGLPASIGD 252
GV G A++T I+ IG +I ++ ++ +K+S + ++ K KIG+P++
Sbjct: 199 GVAGVAMSTSIARVIG-LIAMIVIVNKRIQLKMSLKKVFHMHKEHLRKLLKIGIPSAGEQ 257
Query: 253 STNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYK 312
+ + +++ I G A T T +T F+ F ISQ ++G+ IG + +
Sbjct: 258 LSYNLSQMIVTYFIAIMGAQALTTKVYTQNITMFILLFGTAISQGTQILIGRYIGGKQFD 317
Query: 313 RAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFG 372
A E +K++ I ++L F +++ F P II + ++ P
Sbjct: 318 AAYERCMKSLYWALGIAAATSVLMTIFSKDLIGLFTQSPDIIATASLLIAMTIILEPGRS 377
Query: 373 IFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIGMGLSNVISA 431
+ N +AG K + + +I +WG+ +PL+Y G LG AG+WI +
Sbjct: 378 FNVIIINSLRAAGDAKFPVYMAMISMWGIGLPLAYLFGIHLGFGLAGIWISFIADEWVRG 437
Query: 432 LIGFAWFLKGSWMRR 446
++ + + W+++
Sbjct: 438 ILMYRRWRSRIWIQK 452
>sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir||B64173 hypothetical
protein HI1612 - Haemophilus influenzae (strain Rd KW20)
>gi|1574453|gb|AAC23256.1| (U32834) conserved
hypothetical transmembrane protein [Haemophilus
influenzae Rd]
Length = 464
Score = 119 bits (295), Expect = 7e-26
Identities = 102/433 (23%), Positives = 200/433 (45%), Gaps = 23/433 (5%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSA---PGTVW-PLLWFMMSLGSGF 73
K L++++ P+++ + Q L DT ++ ++++A ++W PL++F G G
Sbjct: 14 KKLIKISLPILLAQIAQNSMGLADTIMAGRVSSTDMAAISIGASIWMPLMFF----GQGL 69
Query: 74 VVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVY 133
++A +S G+G++ + + L+L +S+ L G+ I L+++++ +
Sbjct: 70 LLALPPTISYLNGSGQHHRIAHQVRQGIWLVLGVSIPL-GLLIYFCEIPLQYMQMESKMS 128
Query: 134 PYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF---- 189
A Y+ A+ G+P L L F + TK + + L +++NI L+ +FI+
Sbjct: 129 DLARDYLHAMLWGLPAYLMLINFRCLNDGIEKTKPAMVITFLGLLINIPLNYIFIYGKFG 188
Query: 190 ILDMGVLGAAIATIISEGIGSIIGGYLLFTG--KVGIKISRDDLR-PDVNLYIKTFKIGL 246
+ G +G IAT I ++ + +T + +K+ + P+ K ++GL
Sbjct: 189 MPAFGAVGCGIATAIVNWAMCLMMIFYSYTNTQERSLKVFSQLIEMPNPKTLKKLLRLGL 248
Query: 247 PASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNI 306
P +I + L + ++ G A++ IT ++F+F F I A +VGQ +
Sbjct: 249 PIAIAICCEVALYALTSLMLSPLGATIVASHQITLNTSSFIFMFPMSIGMATTILVGQAL 308
Query: 307 GAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAA 366
GA + + A+++ A+ + + L+ + FR EI F+ D +I + ++ FAA
Sbjct: 309 GAGSPQNAKKIGYAALLLGLTVTIVTALITIFFRYEIASIFVTDEIVIAMAANLL-LFAA 367
Query: 367 SFPFFG-IFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-----DSAGVW 420
+ F I V + TK L + + W + +PL Y LG T D+ G W
Sbjct: 368 LYQFSDTIQMVVGGILRGYKDTKVILYITLFSYWVIGVPLGYTLGRTDWLVPHIDAKGFW 427
Query: 421 IGMGLSNVISALI 433
I +S +A +
Sbjct: 428 IAFVVSLTFAAFL 440
>pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (strain J99)
>gi|4155262|gb|AAD06282.1| (AE001501) putative
[Helicobacter pylori J99]
Length = 417
Score = 111 bits (275), Expect = 2e-23
Identities = 100/415 (24%), Positives = 184/415 (44%), Gaps = 23/415 (5%)
Query: 43 FWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLY- 101
F++ K+ + A G L + + A++S+ +GA ++ + + S++
Sbjct: 9 FFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFAQINHAFSSIFI 68
Query: 102 -SLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVL 160
+ ++ L +L A +I PF L ++++ Y+ + +P + L
Sbjct: 69 GAFVICLGVLFASY-FLIEPF-LNWMQLQDPSRQLTQDYLEVLVIALPSIFLKNVLVSAL 126
Query: 161 RAAGDTKTPVKVNILTIILNIILDPVFIF----ILDMGVLGAAIATIISEGIGSIIGGYL 216
+ DT TP V I+ +I I L+ IF +MG++G+A+A ++ + +
Sbjct: 127 ASFSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALANVV-------VSYWE 179
Query: 217 LFTGKVGIKISRDDLRPDVNL---YIKT-FKIGLPASIGDSTNSFGFVLLNRIIYTYGTV 272
L + I+I + L+ + ++KT FK+G PA + F +LL++ + +YG
Sbjct: 180 LLALSLWIQIKKIPLKFKITFHFSFLKTMFKVGWPAGFERLLSLFSLILLSKFVASYGDK 239
Query: 273 AFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAREVAIKAMATNF-LILVF 331
A I R+ F F G A + GQN+GA K A E A + + L+ V
Sbjct: 240 VLAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGVL 299
Query: 332 GTLLFMAFREEIFRFFINDPGIIKESEK-VVKYFAASFPFFGIFSAVTNVFASAGHTKKN 390
G +L + F +E F D +++ + ++ + P G F + VF AG +K +
Sbjct: 300 GVILIL-FAKEFASLFSQDGEVLEVARSYLIAVGLSQAPLIGYF-VLDGVFRGAGISKVS 357
Query: 391 LILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLSNVISALIGFAWFLKGSWMR 445
L + + LWGLRI Y L +++ + L + + I + F KG W R
Sbjct: 358 LYINTLSLWGLRIMPIYLLLIYHFKVEFIFVVIALETFLRSFIYYKVFSKGIWKR 412
>pir||E82296 conserved hypothetical protein VC0650 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655087|gb|AAF93816.1|
(AE004151) conserved hypothetical protein [Vibrio
cholerae]
Length = 445
Score = 110 bits (273), Expect = 3e-23
Identities = 97/428 (22%), Positives = 186/428 (42%), Gaps = 6/428 (1%)
Query: 11 ILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSL 69
+++ SI + +R P + LV +Y + D ++ +G L+ WP++ ++ +
Sbjct: 1 MMNRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGI 60
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVT 129
G V A+ S G G A R+ + LL+L+ ++A I ++ LR+
Sbjct: 61 GMLVGVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAE 120
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
V+ L+Y+ + G L F+LR + ++ + NI LD +FI
Sbjct: 121 GRVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIA 180
Query: 190 ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPAS 249
L + GAAIAT +++ + +++G F+ + ++++R LR + + K F IG+ +
Sbjct: 181 WLQWELTGAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSF 240
Query: 250 IGDSTNSFGFVLLNRIIYTYG-TVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGA 308
+ S L N ++ YG V Y + + + +GI+ M + + GA
Sbjct: 241 FMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGA 300
Query: 309 ENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFF-INDPGIIKESEKVVKYFAAS 367
NY R++ AM L + L+ F E+ F +D +I ++ +K +
Sbjct: 301 RNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFA 360
Query: 368 FPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLSN 427
G + S K + + + + + +P + L G GVWI + +SN
Sbjct: 361 MYLDGFLVVSAAYYQSTNRGGKAMFITVGNM-SIMLPFLFILPQFFG-LTGVWIALPISN 418
Query: 428 -VISALIG 434
V+S ++G
Sbjct: 419 IVLSTVVG 426
>pir||G64614 conserved hypothetical integral membrane protein HP0759 -
Helicobacter pylori (strain 26695)
>gi|2313885|gb|AAD07807.1| (AE000588) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 417
Score = 106 bits (262), Expect = 6e-22
Identities = 94/413 (22%), Positives = 179/413 (42%), Gaps = 19/413 (4%)
Query: 43 FWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYS 102
F++ K+ + A G L + + A++S+ +GA ++ + + S++
Sbjct: 9 FFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFTQINHAFSSIFI 68
Query: 103 LLLMLSLLLAGIG-IVISPFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLR 161
M+ L + + +I PF L ++++ Y+ + +P + L
Sbjct: 69 GAFMICLGVLFVSYFLIEPF-LNWMQLQDPSRQLTQDYLEVLVVALPSIFLKNILVSALA 127
Query: 162 AAGDTKTPVKVNILTIILNIILDPVFIF----ILDMGVLGAAIATIISEGIGSIIGGYLL 217
+ DT TP V I+ +I I L+ IF +MG++G+A+A ++ + + G
Sbjct: 128 SFSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALANVVVSYLELLALG--- 184
Query: 218 FTGKVGIKISRDDLRPDVNL---YIKT-FKIGLPASIGDSTNSFGFVLLNRIIYTYGTVA 273
V I+I + L+ + ++KT F++G PA + F +LL++ + +YG
Sbjct: 185 ----VWIQIKKIPLKFKITFHFSFLKTMFRVGWPAGFERLLSLFSLILLSKFVASYGDKV 240
Query: 274 FATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGT 333
A I R+ F F G A + GQN+GA K A E A + + ++
Sbjct: 241 LAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGVLG 300
Query: 334 LLFMAFREEIFRFFINDPGIIKESEK-VVKYFAASFPFFGIFSAVTNVFASAGHTKKNLI 392
++ + F +E F D +++ + ++ + P G F + VF AG +K +L
Sbjct: 301 IVLVLFAKEFASLFSQDEEVLEVARSYLIAVGLSQAPLIGYF-VLDGVFRGAGISKVSLY 359
Query: 393 LGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLSNVISALIGFAWFLKGSWMR 445
+ + LWGLRI Y L +++ + + + I + F KG W R
Sbjct: 360 INTLSLWGLRIMPIYLLLIHHFKVEFIFVVIASETFLRSFIYYKVFSKGIWKR 412
>gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pump [uncultured proteobacterium
EBAC31A08]
Length = 448
Score = 102 bits (253), Expect = 6e-21
Identities = 98/447 (21%), Positives = 192/447 (42%), Gaps = 15/447 (3%)
Query: 4 IERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLL 63
+++ E+ L I L++++ P + L+ + L + +++++LG + L+A +P +
Sbjct: 1 MDKRTEQFLKDPIFPLLIKMSAPNTVAFLINAVVVLAEFWFISQLGITPLAAVTLAFPAI 60
Query: 64 WFMMSLGSGFVVAGF-AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFA 122
+ G + + +++ +GA + +A ++ + +L I +
Sbjct: 61 MLTQQMAFGALGGAVTSSIARSLGAADKPRAEKLLWHSLYISCFGALAFLIIFFIFGEPL 120
Query: 123 LRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNII 182
LR + T + +L Y G V + LR GD + P + ++ + +
Sbjct: 121 LRILGGTGALLEESLAYCFVYLLGAIVVWLSGSLTAALRGMGDMQFPAVLTVICAGIQVF 180
Query: 183 LDPVFIF----ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLY 238
FI + +G++G+A + I++ G +++ + + +++ L + L+
Sbjct: 181 FSAGFILGSFGLPKLGLVGSAWSMIVTSGFMALVTLIKISSPSSPVRLKLKRLTIERELF 240
Query: 239 IKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAM 298
F + LPAS+ +LL +I +GT A A Y I +R+ + GI AM
Sbjct: 241 EDIFSVALPASLSPIMTVATVLLLTGLIGQFGTSAIAGYGIGSRVEFLLIPIVFGIGTAM 300
Query: 299 GTMVGQNIGAENYKRAREVA-IKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKES 357
MVG NIGA+N +RA ++ + A L V G L + I F +DP + +
Sbjct: 301 TAMVGTNIGAKNIERAEKIGMVGATTAGLLSAVIGLALALTPNLWI-SIFTSDPETLLVT 359
Query: 358 EKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIP-------LSYYLG 410
++ ++ + F G ++ A K +I+ IRL + LSY L
Sbjct: 360 KQYIQILGVCYVFQGYGLSLYFASQGANAMKWPIIITAIRLIVFSVIALVAVYWLSYGLV 419
Query: 411 TTLGDSAGVWIGMGLSNVISALIGFAW 437
+ SA + G+ VIS +G AW
Sbjct: 420 SIFYASAIAMVIFGILMVISLKMG-AW 445
>pir||A71849 hypothetical protein jhp1110 - Helicobacter pylori (strain J99)
>gi|4155699|gb|AAD06682.1| (AE001538) putative
[Helicobacter pylori J99]
Length = 459
Score = 101 bits (250), Expect = 1e-20
Identities = 96/428 (22%), Positives = 186/428 (43%), Gaps = 16/428 (3%)
Query: 15 SIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSLGSGF 73
SI K PL+ + + Y++ D ++ K LG+ ++A WP+ +++ F
Sbjct: 12 SIRKLFFYYFIPLVFSMISLSTYSMVDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLF 71
Query: 74 VVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVY 133
++V ++G + +A V S++ + + + +L+ + S RF +
Sbjct: 72 GFGAASIVGYFLGQNKTHRARLVFSSVFYFVALSAFILSMALLPFSENIARFFGSNDALL 131
Query: 134 PYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTII---LNIILDPVFIFI 190
+ +Y+ I G V + LH V + K PV + +I NI + +FIF+
Sbjct: 132 SMSKRYIEIILMG-SVFMVLHPLADVFVV--NDKRPVLAMVAMLIGSLANIFFNYLFIFV 188
Query: 191 LDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASI 250
L++GV G+AIAT+I IG ++ + K + + R ++ I + K G+P S
Sbjct: 189 LEVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIK---RFSLSSVISSAKSGVPQST 245
Query: 251 GDSTNSFGFVLLN-RIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAE 309
+ + S +L N I++T G + Y I F ISQ + + + GA
Sbjct: 246 AEFSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGAR 305
Query: 310 NYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI----NDPGIIKESEKVVKYFA 365
N +R R V + + F I +F + E + + ++ D ++E+++ + +
Sbjct: 306 NLERVRAVFVFGLKAAFCIGIFFYGAYYFLDEFLIKLYLQPSEQDALFMQETKRAMNIYY 365
Query: 366 ASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGL 425
+ F G+ F S TK + I+ I G + L L G + G+W+ +
Sbjct: 366 VGYVFLGMTLLCAVFFQSIQRTKSSFIITISHTLGFIVILLPILSHFYGVN-GIWVTYPI 424
Query: 426 SNVISALI 433
+ ++ L+
Sbjct: 425 AQFLAFLV 432
>gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Halobacterium sp.
NRC-1]
Length = 513
Score = 100 bits (246), Expect = 4e-20
Identities = 97/410 (23%), Positives = 177/410 (42%), Gaps = 18/410 (4%)
Query: 23 LAYPLIINNLVQVMYNLTDTFWLA-KLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMV 81
LA P ++ ++ + D F ++ G + ++A + + L ++V
Sbjct: 35 LAVPAMVTGGLRTLLRTADFFMVSIATGSTAVAALEIGFQYYFIPFGLALALTSGTISVV 94
Query: 82 SQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALKYMI 141
S++ GA ++ A+ L L++SL + V + + + P++ Y+
Sbjct: 95 SRFKGADDHAGANFAIKQSLWLALLVSLPITAGTWVYADSMIGLLNSNPEIIELGAAYLR 154
Query: 142 AIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFIL----DMGVLG 197
+ V T + L AGDT+TP+ V ++T+ NI L+ V IF + ++GV+G
Sbjct: 155 VVMLTVVFRFWGMTASRALAGAGDTRTPMYVRLITLPTNIALNAVLIFGIWVFPELGVVG 214
Query: 198 AAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIGDSTNSF 257
AA T I+ + I+ +L +G+ + +S + D + + ++ LP + + +F
Sbjct: 215 AAWGTAIANAVAGIVFFAVLLSGRWDVTLSFSGKQWDWGVASEIVRVSLPLAGTRLSRTF 274
Query: 258 GFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAR-- 315
G ++ + A Y I R+ A G S A T+VGQ +GA + A
Sbjct: 275 GRFPFLFVLGLFSHQVVAAYAIGRRVMLLALMPAWGYSTASSTLVGQQLGAGDPDEAAAY 334
Query: 316 --EVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGI 373
+ A+AT L+ G LLF+A F P + ++ F S F +
Sbjct: 335 GWQTLRVALATQ---LIIGALLFVAAGPIASAF---TPERFSLTVTFIRIFGLSVAGFSV 388
Query: 374 FSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGD--SAGVWI 421
+ AG T+ L G+I + +R+PL+ +L G SAG W+
Sbjct: 389 ARTLRGALRGAGDTRWPLYGGLIGTYIVRLPLA-FLALDPGQIISAGPWV 437
>pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (strain K1)
>gi|5105463|dbj|BAA80776.1| (AP000062) 423aa long
hypothetical protein [Aeropyrum pernix]
Length = 423
Score = 99.1 bits (243), Expect = 9e-20
Identities = 93/398 (23%), Positives = 170/398 (42%), Gaps = 16/398 (4%)
Query: 39 LTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAG 98
+ DT+++ LG ++A G L+W M + + ++ Q IG+G R AG
Sbjct: 12 IVDTYFVGGLGSESIAAVGAAGYLIWLYMVFSTLVYMGVLVILGQAIGSGNRGLVERAAG 71
Query: 99 SLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNF 158
+L ++LS+++ S L + + P+V A +Y+ V + ++
Sbjct: 72 EGLTLSILLSIIVCAAAFAASKQLL--VVLAPEVDQLAWEYLSVSLLTVALHYVTILYDA 129
Query: 159 VLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDMGVLGAAIATIISEGIGSIIGG 214
V RA G T + + + + N LDP+ I+ +GV GAA A++ + +G ++
Sbjct: 130 VFRALGKTMPILYSSGVFTLANTALDPILIYGRLGAPALGVEGAAWASVAASLLGLLVLV 189
Query: 215 YLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAF 274
YL VG++ LRP ++ +G P+ + G V+ + G A
Sbjct: 190 YLSRYLDVGLR----PLRP-TSVSRSILALGFPSMVERVVFVVGNVVYLGSVSRCGADAL 244
Query: 275 ATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLI-LVFGT 333
A +TI R+ + F I+ A G MVG +GA ++ + + + LI LV G
Sbjct: 245 AAHTIGVRIESLAFLPLFSIATASGVMVGWEVGAGRIAESKSTGWELIKLSSLIGLVVGA 304
Query: 334 LLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLIL 393
L + + F DP + + + + P G+ + +AG T+ ++
Sbjct: 305 ALALG-GWLVTPIFTGDPRVAWLAALYLVIAGLTEPLLGVVMVAGQIIRNAGDTRTPTLV 363
Query: 394 GIIRLWGLRIPLSYYLGTTLGDS---AGVWIGMGLSNV 428
+ L+ LR+ +Y L + G W+ MG+ V
Sbjct: 364 NLGSLYILRVVPAYLLPGLMPTGLCVLGAWLAMGIDIV 401
>pir||H64667 conserved hypothetical integral membrane protein HP1184 -
Helicobacter pylori (strain 26695)
>gi|2314344|gb|AAD08230.1| (AE000624) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 459
Score = 97.9 bits (240), Expect = 2e-19
Identities = 96/429 (22%), Positives = 187/429 (43%), Gaps = 20/429 (4%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSLGSGFV 74
I K PL + + Y++ D ++ K LG+ ++A WP+ +++ F
Sbjct: 13 IRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFG 72
Query: 75 VAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYP 134
++V ++G + +A V S++ + + + +L+ + S RF +
Sbjct: 73 FGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARFFGSNDALLS 132
Query: 135 YALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTII---LNIILDPVFIFIL 191
+ +Y+ I G V + LH V + K P+ + +I NI + +FIF+L
Sbjct: 133 MSKRYIEIILMGA-VFMVLHPLADVFVV--NDKRPILAMVAMLIGSLANIFFNYLFIFVL 189
Query: 192 DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIG 251
+GV G+AIAT+I IG ++ + K + + R ++ I + K G+P S
Sbjct: 190 KVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIK---RFSLSSVISSAKSGVPQSTA 246
Query: 252 DSTNSFGFVLLN-RIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
+ + S +L N I++T G + Y I F ISQ + + + GA N
Sbjct: 247 EFSASVMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARN 306
Query: 311 YKRAREVAIKAMATNFL--ILVFGTLLFMAFREEIFRFFI----NDPGIIKESEKVVKYF 364
+R +EV + + F I+ +G F+ E + + ++ DP ++E+++ + +
Sbjct: 307 LERVKEVFVFGLKAAFCIGIVFYGAYYFL--DEFLIKLYLQPSEQDPLFMQETKRAMNIY 364
Query: 365 AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMG 424
+ F G+ F S TK + I+ + G + L L G + GVW+
Sbjct: 365 YVGYIFLGMTLLCAVFFQSIQRTKSSFIITLSHTLGFIVILLPILSHFYGIN-GVWVTYP 423
Query: 425 LSNVISALI 433
++ ++ L+
Sbjct: 424 IAQFLAFLV 432
>pir||H81402 probable integral membrane protein Cj0560 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968028|emb|CAB75196.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 442
Score = 97.5 bits (239), Expect = 3e-19
Identities = 87/415 (20%), Positives = 173/415 (40%), Gaps = 21/415 (5%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSLGSGFVVA 76
+ ++ A P +I+ Y + D ++ K LG L+A + P + +L +
Sbjct: 12 RLFVKYAVPNVISMAFISFYYIVDGIFVGKYLGSDALAALALIIPFIMMSFALADMIAIG 71
Query: 77 GFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYA 136
+S ++G G+ A ++ S ++ ++S + + + P + + V+ ++
Sbjct: 72 SAVQISMHLGLGKKNLARKIFSSSMLIIFIISCFIGILEYFLGPVLIDCLNVSDEIKTMT 131
Query: 137 LKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVL 196
+ M P + + LR G T + +N++ + NI+LD +FI L G+
Sbjct: 132 KECMFVFALFAPFTMLSFALDNYLRICGKTAYSMVMNVIIALSNIVLDYIFIVELGWGLF 191
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIGDSTNS 256
AA+AT + +G I G + + +KIS L ++ ++ G G+ + S
Sbjct: 192 SAALATCLGLVLGGIFGIFPFLFQNLELKIS--SLYMNLKIFKNILYNGSSEFFGNISGS 249
Query: 257 FGFVLLNRIIYTYG-TVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAR 315
+ N ++ T A A ++I + +F+ I AM + N +++ R +
Sbjct: 250 LYSIFANFVLLKISDTQAVAAFSIVLYIDSFIIMLIIAIGDAMQPALSYNYAKKDFSRIK 309
Query: 316 EVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFA-------ASF 368
+ + +F +L + F E + F KE+ + K FA A
Sbjct: 310 AIIKVVFFAGGFLSLFSIVLILIFGENLITLF------TKENNQEFKTFAYTALMLFAFN 363
Query: 369 PFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSY--YLGTTLGDSAGVWI 421
FF F+ ++ F +A K + L + L IPL + +L +G + GVW+
Sbjct: 364 YFFAWFNVLSGSFLTA-FNKASFSLVLSLAQNLFIPLFFLLFLSCFMGLN-GVWL 416
>pir||H82186 probable multidrug resistance protein NorM VC1540 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656046|gb|AAF94694.1| (AE004232) multidrug
resistance protein NorM, putative [Vibrio cholerae]
Length = 461
Score = 97.1 bits (238), Expect = 4e-19
Identities = 94/426 (22%), Positives = 180/426 (42%), Gaps = 25/426 (5%)
Query: 20 LLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFA 79
L++LA P++I ++ Q DT + +++A + + G G ++A
Sbjct: 15 LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 74
Query: 80 MVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALKY 139
+V+Q GAG K L L++S+ + + + + F +RF+ V + + Y
Sbjct: 75 VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGY 133
Query: 140 MIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDMGV 195
M A+ VP L TK + + + ++LNI L+ +F++ ++G
Sbjct: 134 MHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGG 193
Query: 196 LGAAIATIISEGIGSIIGGYLLFTGK--VGIKISRDDLRPDVNLYIKTFKIGLPASIGDS 253
+G +AT I I ++ + + T K +K+ +P I+ F++G P +
Sbjct: 194 VGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALF 253
Query: 254 TNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKR 313
F ++ ++ G+ A + + ++ +F F I A+ VG +G ++ K
Sbjct: 254 FEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKG 313
Query: 314 AREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGI 373
A A + T LL + FRE+I + + ++ + +++ + A +
Sbjct: 314 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA----IYQC 369
Query: 374 FSAVTNVFASAGHTKKNLIL----GIIRLWGLRIPLSYYLGTT-------LGDSAGVWIG 422
AV V A + K++ I W L +P Y LG T LG + G W+G
Sbjct: 370 MDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLG-AKGFWLG 428
Query: 423 --MGLS 426
+GLS
Sbjct: 429 FIIGLS 434
>dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Accession Number
P45272] [Escherichia coli]
Length = 546
Score = 96.3 bits (236), Expect = 6e-19
Identities = 94/432 (21%), Positives = 177/432 (40%), Gaps = 10/432 (2%)
Query: 23 LAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMVS 82
LA P+ + N ++ + TF ++ LG+ ++ G +M+ + + +V+
Sbjct: 96 LAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVA 155
Query: 83 QYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIK--VTPDVYPYALKYM 140
+G + ++A ++ + ++LLA + + F+ T +V AL Y+
Sbjct: 156 FSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKALALTYL 215
Query: 141 IAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFIL----DMGVL 196
P A + LR AG+TK P+ +N ILNII+ + I+ L +G +
Sbjct: 216 ELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV 275
Query: 197 GAAIATIISEGIGSIIGGYLLFTG-KVGIKISRDDLRPDVNLYI--KTFKIGLPASIGDS 253
GA + IS IG++ ++L G ++IS +N I + IG+PAS+
Sbjct: 276 GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVESV 335
Query: 254 TNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKR 313
+ G +L + GT A I + + + A + G+ +G +
Sbjct: 336 LFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVGQIAQ 395
Query: 314 AREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGI 373
A + L L L F + F+ DP + ++ A P +
Sbjct: 396 AEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALFMPIWSA 455
Query: 374 FSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIGMGLSNVISAL 432
+ F A + + + ++ +WG R+ + Y LG LG GVW+GM + A+
Sbjct: 456 SWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAV 515
Query: 433 IGFAWFLKGSWM 444
+ + + G W+
Sbjct: 516 LFYWRMVTGRWL 527
>sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL INTERGENIC REGION
>gi|7466643|pir||B64963 membrane protein yeeO -
Escherichia coli >gi|2367126|gb|AAC75048.1| (AE000290)
orf, hypothetical protein [Escherichia coli K12]
Length = 547
Score = 96.3 bits (236), Expect = 6e-19
Identities = 94/432 (21%), Positives = 177/432 (40%), Gaps = 10/432 (2%)
Query: 23 LAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMVS 82
LA P+ + N ++ + TF ++ LG+ ++ G +M+ + + +V+
Sbjct: 97 LAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVA 156
Query: 83 QYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIK--VTPDVYPYALKYM 140
+G + ++A ++ + ++LLA + + F+ T +V AL Y+
Sbjct: 157 FSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKALALTYL 216
Query: 141 IAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFIL----DMGVL 196
P A + LR AG+TK P+ +N ILNII+ + I+ L +G +
Sbjct: 217 ELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFV 276
Query: 197 GAAIATIISEGIGSIIGGYLLFTG-KVGIKISRDDLRPDVNLYI--KTFKIGLPASIGDS 253
GA + IS IG++ ++L G ++IS +N I + IG+PAS+
Sbjct: 277 GAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVESV 336
Query: 254 TNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKR 313
+ G +L + GT A I + + + A + G+ +G +
Sbjct: 337 LFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVGQIAQ 396
Query: 314 AREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGI 373
A + L L L F + F+ DP + ++ A P +
Sbjct: 397 AEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALFMPIWSA 456
Query: 374 FSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIGMGLSNVISAL 432
+ F A + + + ++ +WG R+ + Y LG LG GVW+GM + A+
Sbjct: 457 SWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAV 516
Query: 433 IGFAWFLKGSWM 444
+ + + G W+
Sbjct: 517 LFYWRMVTGRWL 528
>pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelicolor
>gi|4808406|emb|CAB42738.1| (AL049826) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 448
Score = 96.3 bits (236), Expect = 6e-19
Identities = 90/435 (20%), Positives = 178/435 (40%), Gaps = 18/435 (4%)
Query: 17 EKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVA 76
++ ++ LA P + + ++ + D+ + LG ++L+ G LL +S+ A
Sbjct: 19 DREIVALAVPAFGALVAEPLFVMADSAIVGHLGTAQLAGLGIASALLTTAVSVFVFLAYA 78
Query: 77 GFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYA 136
A VS+ +GAG + A R L L+L + + + +P + + PYA
Sbjct: 79 TTAAVSRRVGAGNLQAAIRQGMDGIWLALLLGAAVVAVFLPAAPSLVELFGASDTAAPYA 138
Query: 137 LKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVL 196
Y+ G+P L + VLR +T+TP+ V + I N +L+ + ++ +G+
Sbjct: 139 TTYLRISSLGIPAMLVVLASTGVLRGLQNTRTPLYVAVAGFIANAVLNVLLVYGAGLGIA 198
Query: 197 GAAIATIISE-GIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIGDSTN 255
G+A T+I++ G+ ++ L+ G + LRPD+ + + G+P + +
Sbjct: 199 GSAWGTVIAQCGMAAV----YLWVVVRGARQHGASLRPDLVGIRASAQAGMPLLVRTLSL 254
Query: 256 SFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAR 315
++ + G A + I L + + D I+ A ++G+ +GA++ + AR
Sbjct: 255 RAILMIATAVAARLGDADIAAHQIVLSLWSLLAFALDAIAIAGQAIIGRYLGADDAQGAR 314
Query: 316 EVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFGIFS 375
E + + + V LL + R F D + + + A + P G+
Sbjct: 315 EACRRMVEWGVAVGVVLGLLVVLSRPVFLPLFTGDSMVTDAALPALVIVAVAQPVCGVVF 374
Query: 376 AVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTL------GDSAGVWIGMGLSNVI 429
+ V AG G W + + L+ + L G +W M L +
Sbjct: 375 VLDGVLMGAGD-------GPYLAWAMLLTLAVFTPAALLVPTLGGGLTALWAAMTLMMAM 427
Query: 430 SALIGFAWFLKGSWM 444
+ + G W+
Sbjct: 428 RLVTLWLRTRSGRWI 442
>dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus]
Length = 456
Score = 94.4 bits (231), Expect = 2e-18
Identities = 87/431 (20%), Positives = 189/431 (43%), Gaps = 22/431 (5%)
Query: 19 TLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGF 78
+L++LA P++I ++ Q DT + +++++A + + G G ++A
Sbjct: 10 SLIKLATPVLIASVAQTGMGFVDTVMAGGVTQTDMAAVSVASSIWLPSILFGIGLLMALV 69
Query: 79 AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALK 138
+V+Q G+ +K L L++S+ + G+ ++ + F L+ + V + +
Sbjct: 70 PVVAQLNGSARREKIPFEIQQGVVLALLISIPIIGV-LLQTQFILQLMDVEAVMADKTVG 128
Query: 139 YMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDMG 194
Y+ A+ VP L T TK + + + ++LNI L+ +F++ ++G
Sbjct: 129 YIHAVIFAVPAFLLFQTLRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELG 188
Query: 195 VLGAAIA-TIISEGIGSIIGGYLLFTGKV-GIKISRDDLRPDVNLYIKTFKIGLPASIGD 252
+G +A TI+ + +++ Y++ + ++ I + + +P ++ FK+G P +
Sbjct: 189 GVGCGVATTIVYWVMFALLLAYVMTSSRLKSINVFGEYHKPQWKAQVRLFKLGFPVAAAL 248
Query: 253 STNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYK 312
F ++ ++ G + A + + ++ +F + A+ VG +G EN
Sbjct: 249 FFEVTLFAVVALLVSPLGPIIVAAHQVAINFSSLVFMLPMSVGAAVSIRVGHRLGEENVD 308
Query: 313 RAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFG 372
AR + + + ++ + RE I + N+P +I + +++ + A +
Sbjct: 309 GARVASRVGIMVGLALATITAIITVLSRELIAELYTNNPEVITLAMQLLLFAAV----YQ 364
Query: 373 IFSAVTNVFASA--GHTKKNLILG--IIRLWGLRIPLSYYLGTT------LGDSAGVWIG 422
AV + A A G+ I I W L +P Y LG T +G + G W+G
Sbjct: 365 CTDAVQVIAAGALRGYKDMRAIFNRTFIAYWILGLPTGYILGRTDWIVEPMG-AQGFWLG 423
Query: 423 MGLSNVISALI 433
+ +AL+
Sbjct: 424 FIIGLTAAALM 434
>pir||B83476 probable transporter PA1361 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947303|gb|AAG04750.1|AE004565_9
(AE004565) probable transporter [Pseudomonas aeruginosa]
Length = 477
Score = 92.1 bits (225), Expect = 1e-17
Identities = 103/412 (25%), Positives = 169/412 (41%), Gaps = 28/412 (6%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPG---TVWPLLWFMMSLGSGFV 74
K LL LA P++I L D + +L+A ++W ++ +M+ G +
Sbjct: 19 KELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMT---GTL 75
Query: 75 VAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYP 134
+A A V+Q GAG+ + L L++ L + +S L +KV P++
Sbjct: 76 LATTAKVAQRHGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIG 135
Query: 135 YALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----I 190
+L Y+ I G P A H G T+ + + I ++LNI ++ I+ +
Sbjct: 136 PSLLYLKGIALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGM 195
Query: 191 LDMGVLGAAIATIISEGIGSIIG----GYLLFTGKVGI-KISRDDLR---PDVNLYIKTF 242
MG G AT GS++ G L + K I + S+ R PD
Sbjct: 196 PKMGGPGCGWAT------GSVMWFMFLGMLFWVNKASIYRASQLFSRWEWPDRATIGPLV 249
Query: 243 KIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMV 302
+GLP I S F ++ +I A + I + +F + A+ V
Sbjct: 250 AVGLPIGIAVFAESSIFSVIALLIGGLDENVVAGHQIALNFSALVFMIPYSLGMAVTVRV 309
Query: 303 GQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVK 362
G N+GA + AR A MA L + RE+I + DP +I + ++
Sbjct: 310 GHNLGAGLPRDARFAAGVGMAAALGYACVSASLMLLLREQIAAMYSPDPAVIAIAASLI- 368
Query: 363 YFAASFPFFGIFSAVTNVFASAGH--TKKNLILGIIRLWGLRIPLSYYLGTT 412
F+A F F VT A G+ T+ +I+ + WG+ +P+ Y LG T
Sbjct: 369 VFSALFQFSDALQ-VTAAGALRGYQDTRVTMIMTLFAYWGIGLPVGYSLGLT 419
>pir||F69906 conserved hypothetical protein yojI - Bacillus subtilis
>gi|2634337|emb|CAB13836.1| (Z99114) similar to
hypothetical proteins [Bacillus subtilis]
>gi|3169325|gb|AAC17857.1| (AF026147) YojI [Bacillus
subtilis]
Length = 452
Score = 89.3 bits (218), Expect = 8e-17
Identities = 91/439 (20%), Positives = 184/439 (41%), Gaps = 31/439 (7%)
Query: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
M + RE+I K LL + P+ I + DT K+ ++L+ +
Sbjct: 1 MKETQNAREKI------KQLLHILIPIFITQAGLSLITFLDTVMSGKVSPADLAGVA-IG 53
Query: 61 PLLWFMMSLG-SGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVIS 119
LW + G +G ++A +V+Q +GA + +K + +LS+ + IG
Sbjct: 54 SSLWTPVYTGLAGILMAVTPIVAQLLGAEKKQKIPFTVLQAVYVAALLSIAVLVIGYAAV 113
Query: 120 PFALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIIL 179
L + + V+ A ++ + G+ + + G T+ + + + ++ +
Sbjct: 114 DLILGRLNLDIHVHQIAKHFLGFLSLGIFPLFVYTVLRSFIDSLGKTRVTMMITLSSLPI 173
Query: 180 NIILDPVFIF----ILDMGVLGAAIATIISEGIGSIIGGYLLFTGK------VGIKISRD 229
N +L+ VFIF + +G +GA +A+ ++ II +++ + + + +
Sbjct: 174 NFVLNYVFIFGKFGMPALGGVGAGLASALTYWCICIISFFIIHKNAPFSEYGIFLTMYKF 233
Query: 230 DLRPDVNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFA 289
+ NL KIGLP + F + ++ + TV A++ + ++
Sbjct: 234 SWKACKNL----LKIGLPIGFAVFFETSIFAAVTLLMSHFHTVTIASHQAAMNFASLLYM 289
Query: 290 FADGISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFIN 349
+S A+ +VG GA +K AR ++ + +F + FRE+I + +
Sbjct: 290 LPLSVSMALTIVVGFEAGAARFKDARSYSLIGIMMAIGFSLFTAACILLFREQIAGMYTS 349
Query: 350 DPGIIKESEKVVKYFAASFPFFGIFSAVTNVFASA--GHTKKN--LILGIIRLWGLRIPL 405
DP ++ ++ ++F FF + AV A G+ N L + W + +P+
Sbjct: 350 DPDVL----RLTQHFLIYALFFQLSDAVAAPIQGALRGYKDVNYTLAAAFVSYWVIGLPV 405
Query: 406 SYYLGT-TLGDSAGVWIGM 423
Y +GT T + G WIG+
Sbjct: 406 GYMVGTFTSLGAFGYWIGL 424
>pir||G70172 conserved hypothetical integral membrane protein BB0584 - Lyme
disease spirochete >gi|2688513|gb|AAB91523.1| (AE001160)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 448
Score = 88.2 bits (215), Expect = 2e-16
Identities = 108/450 (24%), Positives = 189/450 (42%), Gaps = 35/450 (7%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
I K LL++A P I + +LTD +A LG + G +F + + GF +
Sbjct: 16 IYKDLLKIAIPTAIEFFLFNFISLTDNAMVAYLG--DYPVAGVSLANKFFELFVTIGFSM 73
Query: 76 AGF--AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVY 133
AG + ++ G++K +++ S I IV F LR I
Sbjct: 74 AGAYNIIATRQYNQGDFKSFRNTFFISILTIILFSFPFILISIVNPFFLLRLISNDERAV 133
Query: 134 PYALKYM-IAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILD 192
Y Y+ IAIF+ V A+ L+ K V +++ +++LN + + +FIF+
Sbjct: 134 YYGAAYLNIAIFSFV-FAIIKGLIANALKVVEIVKFQVYISVFSVLLNFVFNYIFIFVFH 192
Query: 193 MGVLGAAIATIISEGIGSIIGGYLL---FTGKVGIKISRDDLRPDVNLYIKTFKIGLPAS 249
MGV+GAAIAT + + I+ YL+ F + DDL ++ + + K +P
Sbjct: 193 MGVVGAAIATTVIRTLELIV--YLVCTAFNKNSILHFKLDDLNINIKPFAQLIKFFIPIL 250
Query: 250 IGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAE 309
+ + FG+++L I T +A Y+I+ + +F ++ M+G +
Sbjct: 251 LNEFAWFFGYLVLTSIFIGIDTHKYAAYSISFSIYFIIFNIIHSFCISLNIMMGYEM-HN 309
Query: 310 NYKRAREVAI--------KAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVV 361
+ K +VAI A T+F++ +F F + I GII V
Sbjct: 310 SKKEIMKVAIYLSKIGLKLAFLTSFVLFIFSFFAPYIFYTLKYSHLI---GIILRYSSVS 366
Query: 362 KYF-AASFPF-FGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG--TTLGDSA 417
+F A +F + FG F A S G + + + IP+++ L T L
Sbjct: 367 AFFMALAFQYLFGFFRA--GASPSFGAIMEGSVTFV-----YTIPIAFVLANYTNLPFEI 419
Query: 418 GVWIGMGLSNVISALIGFAWFLKGSWMRRI 447
V+I L + I ++ +F W++ +
Sbjct: 420 IVFI-PSLEDAIKLVVSLPYFYSERWIKSV 448
>dbj|BAB07764.1| (AP001520) unknown conserved protein in others [Bacillus
halodurans]
Length = 447
Score = 86.6 bits (211), Expect = 5e-16
Identities = 89/427 (20%), Positives = 183/427 (42%), Gaps = 21/427 (4%)
Query: 19 TLLRLAYPLIINNLVQVMYNLTDTFWLAK-LGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
TLL A P + L +Y + D ++A+ +G + LSA +P+ ++++
Sbjct: 15 TLLAYAAPTMALMLFMSIYTMVDGMFIARYVGATALSAVNIFFPIYGLIIAIALMLGTGA 74
Query: 78 FAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKV--TPDVYPY 135
A++++ IG ++A + +L L++ G+++ L + T +++ +
Sbjct: 75 NAIIAKKIGENNEEEAKENFTFIVICGAVLGLVITVFGLLLMEPILLMLGAGATEELFDF 134
Query: 136 ALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGV 195
Y I P + F AG + + ++ + NI+LD VFI +L MG+
Sbjct: 135 TYTYAKIILCTSPFMILQMLFQNFFVTAGKPNLGLTITVVGGVANIVLDYVFIVLLQMGI 194
Query: 196 LGAAIATIISEGIGSIIG-GYLLFTGKVGIKISRDDLRPDVNLYIKTFKIG---LPASIG 251
GA IAT I I + G Y ++ + G+ + + D + + + G + +++
Sbjct: 195 AGAGIATAIGIFIPAAYGFVYFIYNKESGLHFVKP--KVDGKVLLNSCINGSSEMVSNLA 252
Query: 252 DSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENY 311
S +F F LL +I G A TI + + + + G S + ++ N G++N
Sbjct: 253 SSIVTFAFNLL--MIKHLGVDGVAAITIMLYVMFILSSISMGYSAGVAPIISYNYGSKNS 310
Query: 312 KRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI-----NDPGIIKESEKVVKYFAA 366
+ + V + LI+V G++ +FI + + + + F+
Sbjct: 311 SQLKRV----FNYSLLIIVIGSVTMYGVSMMFGAYFIQFMAPEGSAVYHIAIEGLNIFSI 366
Query: 367 SFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLS 426
SF F G + VF + + K + + +R + + L LG G+W+ + L+
Sbjct: 367 SFLFMGFNIFSSMVFTAFSNGKISAAISFLRTLVFVLASLWILPAILG-VTGIWLAIPLA 425
Query: 427 NVISALI 433
++S ++
Sbjct: 426 EILSVIV 432
>dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 458
Score = 85.8 bits (209), Expect = 9e-16
Identities = 91/447 (20%), Positives = 185/447 (41%), Gaps = 42/447 (9%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLG-SGFVVA 76
K L + P++I + N DT + G ++L+ + LW + G +G ++A
Sbjct: 12 KLFLVVMMPILITQIGLYAMNFFDTVMSGQAGANDLAGVA-IGSSLWVPVFTGLNGVLLA 70
Query: 77 GFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYA 136
+++Q IGA + V L + +S+ + IG V+ L + + +V A
Sbjct: 71 LTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVGRIA 130
Query: 137 LKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVL 196
+Y+I + G+ T ++ + G+T+ + + +L++ +NI + V IF G L
Sbjct: 131 KEYLIGLAFGIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINIFFNYVLIF----GKL 186
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRP--DVNLYIKTFKI---------- 244
G + G S I + + + + + +RP D L+ K + +
Sbjct: 187 GFPRLGGVGAGYASAITYWFILAVAIVVVVK---VRPFTDFQLFKKLYHVSLKKWKEILL 243
Query: 245 -GLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVG 303
GLP + F + ++ T+ T A + +F++ I+ + VG
Sbjct: 244 LGLPIGFTIFFETSIFAAVTLLMSTFDTATIAAHQAAVNFASFLYMIPLSIAFTLTIAVG 303
Query: 304 QNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKY 363
+GA+ + AR+ + + ++ + ++ R + + ND V +
Sbjct: 304 YEVGAKRVEDARQYSRLGITFALIMGLVAGVIIYVLRAPVASLYTND--------SQVAW 355
Query: 364 FAASFPFFGIFSAVTNVFAS------AGHTKKNL--ILGIIRLWGLRIPLSYYLG--TTL 413
F + IF +++ A+ GH N+ ++ ++ W + +P Y L + L
Sbjct: 356 LIQQFLIYSIFFQLSDALATPIQGVLRGHKDVNVPFVMALVSFWIIGLPTGYLLANFSPL 415
Query: 414 GDSAGVWIGMGLSNVISALIGFAWFLK 440
G G WIG+ ++ + S I +W LK
Sbjct: 416 G-PYGYWIGL-ITGLASCAIALSWRLK 440
>gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Halobacterium sp.
NRC-1]
Length = 489
Score = 83.9 bits (204), Expect = 3e-15
Identities = 104/450 (23%), Positives = 175/450 (38%), Gaps = 26/450 (5%)
Query: 11 ILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWL-AKLGRSELSAPGTVWPLLWFMMSL 69
++S S + LA+P I+ + ++ + D + A LG + ++ G P S+
Sbjct: 36 LISESRARRTAELAWPRILTGIGRMSKSAADVAMVGAALGSAAITGVGYAGPFWGAAFSI 95
Query: 70 GSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVT 129
G G A+VSQ A E A + S +L + +L +A + + +
Sbjct: 96 GGGLAAGTIALVSQRFSADEIADAGQALRSSAALTVAATLPIAVLFYSHPAALIGLLTDR 155
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
+ Y+ + GVP A + L A D T + + + NI L+ VFIF
Sbjct: 156 QAEIAFGADYLRVVAFGVPFAGLNLIGSRALIGADDAYTAMVLRGGGALANIGLNGVFIF 215
Query: 190 ILDMGVLGAAIATIISEGI---GSIIG---GYLLFTGKVGIKIS-------RDDLRPDVN 236
L GV+GA + T++S + ++G G L G + +S RDD V
Sbjct: 216 GLGWGVVGAGLGTVLSNVVVTTAFVVGLSRGRLPAVGAFPMTVSVRGAYWVRDDCWDIVT 275
Query: 237 LYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQ 296
IGLP +S + L + +G A Y I R+ M G
Sbjct: 276 -------IGLPVVGRNSVWTLARFPLLAFMSLFGQPVAAAYIIVRRVFGIMNTPGWGFGL 328
Query: 297 AMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI---NDPGI 353
A ++VGQ +G A + + ++ V + AF +I F+ +DP +
Sbjct: 329 AASSLVGQELGQGRESTAAAYGREITLYSVVMYVMFAGVVCAFAGQIVGVFVDSASDPSV 388
Query: 354 IKESEKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTL 413
V AA P GI + V + G T+ + + G +PL Y TT
Sbjct: 389 PIAVTMVYVAAAAVIP-QGIGATVAGALDATGDTRWPFYSRAVGMLG-ALPLVYLGATTP 446
Query: 414 GDSAGVWIGMGLSNVISALIGFAWFLKGSW 443
G+++ + + A++ + F G W
Sbjct: 447 LGLYGIYLSLFSETCVPAVVNYLRFRSGKW 476
>gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane protein [Arabidopsis
thaliana] >gi|11128377|gb|AAG31183.1|AC074395_4
(AC074395) MATE efflux family protein, putative
[Arabidopsis thaliana]
Length = 526
Score = 82.7 bits (201), Expect = 8e-15
Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 13/356 (3%)
Query: 91 KKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPD--VYPYALKYMIAIFAGVP 148
K+ R A + L L+L L+ A I S L + V P+ + A KY+ G P
Sbjct: 165 KRTIRTASTAMILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAP 224
Query: 149 VALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVLGAAIATIISEGI 208
L + R DTKTP+ ++ ++NI+LDP+FIF+L +G++GAAIA +IS+
Sbjct: 225 ALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVLDPIFIFVLRLGIIGAAIAHVISQYF 284
Query: 209 GSIIGGYLLFTGKVG-IKISRDDLRPDVNLYIKTFKIGLPASIGDSTNSFGFVLLNRIIY 267
++I ++ KV I + DL+ + + K GL +F L +
Sbjct: 285 MTLI-LFVFLAKKVNLIPPNFGDLQ-----FGRFLKNGLLLLARTIAVTFCQTLAAAMAA 338
Query: 268 TYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRAREVAIKAMATNFL 327
GT A + I ++ DG++ A ++ + ++Y + VA + + F
Sbjct: 339 RLGTTPMAAFQICLQVWLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVLQMGF- 397
Query: 328 ILVFGTLLFMAFREEI-FRFFINDPGIIKESEKVVKYFAASFPFFGIFSAVTNVFASAGH 386
+L G +F+ F DP +I + + AA+ P + + V A
Sbjct: 398 VLGLGLSVFVGLGLYFGAGVFSKDPAVIHLMAIGIPFIAATQPINSLAFVLDGVNFGASD 457
Query: 387 TKKNLILGIIRLWGLRIPLSYYLGTTLGDSAGVWIGMGLSNVISALIGFAWFLKGS 442
++ + + I Y+ T G G+WI + + + A+ G A G+
Sbjct: 458 FAYT-AYSMVGVAAISIAAVIYMAKTNG-FIGIWIALTIYMALRAITGIARMATGT 511
>gi|8922709 hypothetical protein FLJ10847 [Homo sapiens]
>gi|7023138|dbj|BAA91852.1| (AK001709) unnamed protein
product [Homo sapiens]
Length = 570
Score = 80.8 bits (196), Expect = 3e-14
Identities = 89/435 (20%), Positives = 180/435 (40%), Gaps = 13/435 (2%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFM-MSLGSGFVVA 76
+ LL LA P + L+ + + + + LG+ EL A ++ +S+G G A
Sbjct: 36 RALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSA 95
Query: 77 GFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYA 136
++SQ G+ K + +L+L+L + + L + PDV
Sbjct: 96 CDTLISQTYGSQNLKHVGVIL-QRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLT 154
Query: 137 LKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVL 196
Y+ +P L G + + ++N + + +F+ L +GV+
Sbjct: 155 QTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVI 214
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIKISRDD----LRPDVNLYIKTFKIGLPASIGD 252
G+A+A +IS+ ++ LLF +G K+ + + + ++ +P+ +
Sbjct: 215 GSALANLISQYTLAL----LLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLML 270
Query: 253 STNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYK 312
+ + + + + G V +I L ++ G S A VG +GA + +
Sbjct: 271 CMEWWAYEVGSFLSGILGMVELGAQSIVYELAIIVYMVLAGFSVAASVRVGNALGAGDME 330
Query: 313 RAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFFG 372
+AR+ + ++ L V ++L ++ ++ + F D II +VV +A S F
Sbjct: 331 QARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEA 390
Query: 373 IFSAVTNVFASAGHTKKNLILGIIRLW--GLRIPLSYYLGTTLGDSAGVWIGMGLSNVIS 430
+ V +G+ K I+ I + GL I ++ TTLG G+W G+ + V
Sbjct: 391 LACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLG-VMGLWSGIIICTVFQ 449
Query: 431 ALIGFAWFLKGSWMR 445
A+ + ++ +W +
Sbjct: 450 AVCFLGFIIQLNWKK 464
>pir||E82175 conserved hypothetical protein VC1631 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656143|gb|AAF94782.1|
(AE004241) conserved hypothetical protein [Vibrio
cholerae]
Length = 458
Score = 80.4 bits (195), Expect = 4e-14
Identities = 98/458 (21%), Positives = 185/458 (39%), Gaps = 31/458 (6%)
Query: 12 LSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGS 71
+ G + L+ +A P+ + N++ L D L +LG +E++A G + +
Sbjct: 11 MRGDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLV 70
Query: 72 GFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPF-ALRFIKVTP 130
G G + +QY GAG+ K +L ++S A +++ F + + +T
Sbjct: 71 GVTTGGALLTAQYWGAGDRKGVREST----ALTWLVSNFFAFFTVLLFLFFPQQIMSLTT 126
Query: 131 D---VYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVF 187
D V +Y+I + + + LRA + + I+ N++L+ +
Sbjct: 127 DSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWIL 186
Query: 188 IF----ILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLR-----PDVNLY 238
IF MG+ GAAIAT++S I L+ K + D++ P ++ +
Sbjct: 187 IFGKFGFPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRF 246
Query: 239 IKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAM 298
++ + LP + + G + I+ G A ++ + + + G+S A
Sbjct: 247 LR---LSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAA 303
Query: 299 GTMVGQNIGAENYKRAREVAIKAMATNFLI-LVFGTLLFMAFREEIFRFFINDPGIIKES 357
+VG +GA+NY+ AI A + L+ +V L++ + F P + S
Sbjct: 304 AVLVGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELS 363
Query: 358 EKVVKYFA-----ASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTT 412
EK + SFP +A+ V + G K L I+ W + IPL+ +
Sbjct: 364 EKFMLILCLGIVLRSFP----MTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALV 419
Query: 413 LGDSAGVWIGMGLSNVISALIGFAWFLKG-SWMRRIVE 449
L + L+ + G +K WM+ ++E
Sbjct: 420 LKVEPEWIYLLFLTEEVVKWFGSLHRMKSKKWMKNLIE 457
>sp|Q55364|Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896 >gi|7449158|pir||S75711
hypothetical protein slr0896 - Synechocystis sp. (strain
PCC 6803) >gi|1001206|dbj|BAA10446.1| (D64003)
hypothetical protein [Synechocystis sp.]
Length = 461
Score = 78.8 bits (191), Expect = 1e-13
Identities = 91/443 (20%), Positives = 183/443 (40%), Gaps = 18/443 (4%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
+ L+LA PL + Q DT + LG+ L+A G + M G G +
Sbjct: 15 REFLKLAVPLAGAQMAQAATGFVDTVMMGWLGQDVLAAGGLATMIFMAFMMTGVGLISGV 74
Query: 78 FAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYAL 137
+V++ GAG+ ++ ++ ++L+LS+ + I + + +
Sbjct: 75 SPLVAEAYGAGQTRRIGQLTRQGLWIVLLLSIP-GMLFITHLNGVMHWSGQADTTIILSD 133
Query: 138 KYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDM 193
Y+ + G+ A+ T + A + + + I + NI+ + F +
Sbjct: 134 SYLNVMAWGLFPAIAFATLRGCIIALSQARPIMLIVIAATLFNILGNYGLGFGKWGFPAL 193
Query: 194 GVLGAAIATIISEGIGSI-IGGYLLF---TGKVGIKISRDDLRPDVNLYIKTFKIGLPAS 249
G+ G AIA+I + I + + Y+L+ + + S L+P + + +G P
Sbjct: 194 GITGLAIASISAHWIMFLSLLVYMLWHKPLHQYSLFDSLHHLKP--RILQQLLWVGGPIG 251
Query: 250 IGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAE 309
I ++ + + GT A + + ++ +F +S A VGQ G +
Sbjct: 252 IAAVLEYGLYLTASFFMGALGTPILAAHQVVSQTVLVLFMVPLAMSYAATVRVGQWFGQQ 311
Query: 310 NYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFI--NDPG---IIKESEKVVKYF 364
++ + R+ A+ ++ L ++ + +A+ ++I ++ NDP + ++K
Sbjct: 312 HWPQIRQAALVSIGLAVLFMLTAGIALLAYPQQIIGLYLDLNDPANGEALNVGISIMKIA 371
Query: 365 AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-TTLGDSAGVWIGM 423
A G+ V T+ ++LG I WG+ + SY LG T AGVWIG
Sbjct: 372 AFGLVLDGLQRTANGVLQGLQDTRIPMVLGTIAYWGIGLTASYLLGFYTPLSGAGVWIGT 431
Query: 424 GLSNVISALIGFAWFLKGSWMRR 446
+ + +A I + W + +R+
Sbjct: 432 YI-GLAAASIAYLWRFQKVMVRK 453
>pir||H75559 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457769|gb|AAF09695.1|AE001873_5 (AE001873)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 451
Score = 75.3 bits (182), Expect = 1e-12
Identities = 91/440 (20%), Positives = 176/440 (39%), Gaps = 39/440 (8%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
+ LLRLA P++++ L T + +LG EL+A + + + G +++
Sbjct: 16 RALLRLAGPVVVSQFAANALALIATAVIGRLGERELAAAAYANAAYYLVFIMVVGVMLSV 75
Query: 78 FAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYAL 137
V+Q GAG+ + +R G L L+LS ++ + +AL F V P+ P +
Sbjct: 76 APRVAQAHGAGDARGVARALGGGLRLALLLSAVMLPL-----MWALSF--VLPNFAPAGV 128
Query: 138 K------YMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF-- 189
Y+ G+ L L G V + ++ +++ P F
Sbjct: 129 SRDLVAAYLRVYSLGMLPNLAFIALRGTLEGTGKPGAVTGVALTGVVWALLVAPALAFGW 188
Query: 190 --ILDMGVLGAA-----IATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTF 242
+ +G+ GAA A I++ + + + + G +G D++R F
Sbjct: 189 GPLPRLGLAGAAGASASAAWIMAALLWPLARRRVAYAGPLG--PLGDEVR-------ALF 239
Query: 243 KIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMV 302
++G P + F + ++ +G A + +T + F GI+ A G V
Sbjct: 240 RLGWPIGLTLGAEGGMFSVTTLLMARFGPEVLAAHNVTMQTITAFFMVPLGIASATGVRV 299
Query: 303 GQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFF--INDP---GIIKES 357
G GA +AR + + + +++ ++ +A +F F +NDP G+I +
Sbjct: 300 GTEAGAGRLAQARRAGLVGLGLSSAVMLTFAVIELAAPRTVFSVFVNVNDPANAGLIAAA 359
Query: 358 EKVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSA 417
+ A G+ T+ L++ ++ W + + L L + G A
Sbjct: 360 TGFLSIAALFQLMDGLQVTANGALRGLQDTRVPLLVSLVAYWVVGLGLGSVLSSVAGLGA 419
Query: 418 -GVWIGM--GLSNVISALIG 434
G+W G+ GL+ +L+G
Sbjct: 420 RGLWFGLTAGLTLAGLSLVG 439
>pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107925|gb|AAF85483.1|AE004074_7
(AE004074) multidrug efflux protein [Xylella fastidiosa]
Length = 469
Score = 75.3 bits (182), Expect = 1e-12
Identities = 95/431 (22%), Positives = 172/431 (39%), Gaps = 16/431 (3%)
Query: 14 GSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGF 73
GS + L LA PL++ ++ + L+A LLW M + G
Sbjct: 27 GSEVRPTLLLALPLVLGHVSTGLIGFVLNVIAGHHSTVTLAASTIGTALLWLPMLVPMGT 86
Query: 74 VVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIV---ISPFALRFIKVTP 130
+++ +VSQ GA + R G L+ L L++LL + + P L + P
Sbjct: 87 LISLTVLVSQLHGA----ERERDIGPLFRQALWLAMLLGLVMFTFLSVVPALLPLFGIVP 142
Query: 131 DVYPYALKYMIAIFAG---VPVALTLHTFNFVLRAAGDTKTPVKVNILTII-LNIILDPV 186
D+ P A K++ + G P+ + F + T +L ++ L+ L
Sbjct: 143 DIVPGAAKFLHVVRWGSLAFPLYFCMRYFCEGMHCTFPTMLLGFGGLLVLVPLSYALTYG 202
Query: 187 FIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGK--VGIKISRDDLRPDVNLYIKTFKI 244
+ GV G IAT++ + +++ L+ + +++ P I
Sbjct: 203 RFGFSEYGVEGLGIATVMVMWLQAVVFALYLWRSRRFAHLQLFAHLELPCWARIRDLLNI 262
Query: 245 GLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQ 304
GLP I F++ +I +GT A + I + F G+++A +G
Sbjct: 263 GLPIGISILMEGGLFIVTTLLIGRFGTDEIAAHQIALSVAQLCFMIPMGVAEATTVRIGH 322
Query: 305 NIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYF 364
+G + R VA A + + + I + +D + + K++ F
Sbjct: 323 AVGRCDLLVMRRVAWAGYAIVIGTQTLSASVLLLGYDVIVAAYTDDLVVASLASKLL-LF 381
Query: 365 AASFPF-FGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTL-GDSAGVWIG 422
AA F F G+ + V T+ ++L +I WGL +PL LG L +S G+WIG
Sbjct: 382 AAIFQFPDGLQMLSSGVLRGMKDTRVPMLLAMISYWGLGMPLGLGLGFALEWNSRGMWIG 441
Query: 423 MGLSNVISALI 433
+ + +A++
Sbjct: 442 LIIGLTAAAVL 452
>pir||D81950 probable transmembrane efflux protein NMA1022 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379724|emb|CAB84291.1| (AL162754) putative
transmembrane efflux protein [Neisseria meningitidis
Z2491]
Length = 459
Score = 74.9 bits (181), Expect = 2e-12
Identities = 85/442 (19%), Positives = 177/442 (39%), Gaps = 32/442 (7%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
+ L LA P+++ + QV DT G+ +L+A + G + A
Sbjct: 18 RLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAAL 77
Query: 78 FAMVSQYIGAGEYKKASRVA--GSLYSLLL-MLSLLLAGIGIVISPFALRFIKVTPDVYP 134
M++Q GAG+ + G + L L + ++L + I+PF ++ ++ V
Sbjct: 78 NPMIAQLYGAGKTDEVGETGRQGIWFGLFLGVFGMVL--MWAAITPFR-NWLTLSDYVEG 134
Query: 135 YALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF-ILDM 193
+YM+ +P A+ + + + + V+ +LN+ L+ +F++ M
Sbjct: 135 TMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGM 194
Query: 194 GVLGAAIATIISEGIGSIIGGYLLFTG-KVGIKISRDDL-----------RPDVNLYIKT 241
LG A G G F+ + I I++++ +PD ++ +
Sbjct: 195 PALGGA-------GCGLATMAVFWFSALALWIYIAKENFFRPFGLTAKFGKPDWAVFKQI 247
Query: 242 FKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTM 301
+KIG P + + F + +I +G A + L+ ++ + A
Sbjct: 248 WKIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVR 307
Query: 302 VGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVV 361
+G ++G + RAR ++ ++ + +++ V L + FR + + NDP ++ + V+
Sbjct: 308 IGFSLGRREFSRARYISGVSLVSGWMLAVITVLSLVLFRSPLVSMYNNDPAVLSIAATVL 367
Query: 362 KYFAASFPFFGIFSAVTNVFASAGH--TKKNLILGIIRLWGLRIPLSYYLGTTLGDSA-G 418
+ P F+ +A G+ TK + + WG + Y L G
Sbjct: 368 LFAGLFQP--ADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYG 425
Query: 419 VWIGMGLSNVISALIGFAWFLK 440
W + ++++ A I W L+
Sbjct: 426 FWTAL-IASLTIAAIALVWCLE 446
>gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporter [Burkholderia
vietnamiensis]
Length = 462
Score = 74.9 bits (181), Expect = 2e-12
Identities = 100/438 (22%), Positives = 179/438 (40%), Gaps = 24/438 (5%)
Query: 22 RLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAGFAMV 81
RLA PL I L Q+ ++TDT L LG L+A G + ++++ G + + V
Sbjct: 25 RLAAPLAIAQLSQMAMSVTDTVLLGSLGPDSLAAGGLGANFFFVIVTVLQGVLSSVSVSV 84
Query: 82 SQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALKYM- 140
+ GA + + + + L ++L+ + A + + +S L P + + +Y
Sbjct: 85 AHARGAQAEHRVPHIYWTGFVLSVLLA-IPAVVALSLSEPLLLMFHEPPTLAQHVGEYTG 143
Query: 141 IAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----ILDMGVL 196
I FA + + + L A G + + V+I I +N +L+ I + +G L
Sbjct: 144 ILRFAALGSLIGVGLMRAFLPAIGAARRLLWVSIGGIGVNAVLNYGLIHGAYGLPRLGFL 203
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLPASIGDSTNS 256
G+A+AT I+ + + +LL G+ + RP + + + IG P +I S
Sbjct: 204 GSAVATTITIWLTAFALIWLLH-GRARFRHFVSAARPKLPMMGELIGIGWPVAITYGVES 262
Query: 257 FGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENYKRARE 316
F+ + G A A + I + + F I QA VG IGA + AR
Sbjct: 263 TLFLATGLTVGVLGATALAAHQIALNVASVAFMVPLAIGQAANVRVGYWIGAGDPVAARH 322
Query: 317 VAIKAMATNFLILVFGTLLFMAFREEIFRFF--INDPGIIKESEKVVKYFAASFPFFGIF 374
A+ + L+ + I + ++DP + V A+ +F
Sbjct: 323 AGFVALGLGVAFMSLSGLVLILAPHAIVGLYLHLDDPA----NAATVSLAASLLGIAAVF 378
Query: 375 SAV-------TNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTTLGDSA-GVWIGM--G 424
V + T+ ++ WG+ P Y+L G A G+W G+ G
Sbjct: 379 QIVDGMQTVGSGALRGLRDTRIPMLAATFGYWGIGFPTGYWLAFHAGLGARGLWWGLAAG 438
Query: 425 LSNVISALIGFAWFLKGS 442
L++V + L+ + + LK S
Sbjct: 439 LASV-AVLMAWRFHLKTS 455
>pir||F70172 conserved hypothetical integral membrane protein BB0583 - Lyme
disease spirochete >gi|2688514|gb|AAB91524.1| (AE001160)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 449
Score = 74.5 bits (180), Expect = 2e-12
Identities = 95/444 (21%), Positives = 179/444 (39%), Gaps = 23/444 (5%)
Query: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
I K L +A P +L+ M D F ++ LG ++ + + + G
Sbjct: 11 IIKELFVIAIPTAFESLLFQMVTFFDNFMISYLGSFHVTGVSLANRVTFLFFIIVFGLGT 70
Query: 76 AGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPY 135
A A VSQ I KK +V S +LL+ + IGI+ F+ F + ++
Sbjct: 71 ALSAYVSQAIAK---KKFLQVRQSFAYILLIGTT----IGIIFFIFSFLFPRNIIKLFTA 123
Query: 136 ---ALKYMIAIFAGVPVALTLHTFNFV----LRAAGDTKTPVKVNILTIILNIILDPVFI 188
+L + + ++ L ++F+ ++A + K P+ V + +++NI+ + + I
Sbjct: 124 NQDSLNFGSEYLKIISLSYVLMAYSFLSAMGFKSAKEVKIPLYVTSIVVLINIVFNYILI 183
Query: 189 FILDMGVLGAAIATIISEGIGSIIGG-YLLFTGKVGIKISRDDLRPDVNLYIKTFKIGLP 247
F MG+ GAA AT+++ + + Y L + +I D + K+ +P
Sbjct: 184 FGFSMGIKGAAYATVLARIVEFVFYFLYSLISSNSYYRIKFGDFFAPKVVTRANLKLIIP 243
Query: 248 ASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIG 307
+ +L+ G++ +A++ + + L + F G+ A G ++G ++
Sbjct: 244 VLSHEIFWVLSITILHAFYARVGSIEYASFAVASNLFDICFVLLHGMGLATGVVIG-HLM 302
Query: 308 AENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAAS 367
+ K R V FL+ +F +L + F +I E V Y AS
Sbjct: 303 IYDKKHVRSVGFFLSFLGFLLGIFVVILLIGISS--FAPYIFSKLDSPELVSVFIYVFAS 360
Query: 368 FPFFGIFSA--VTNVFASAGHTKKNLIL--GIIRLWGLRIPLSYYLGTTLGDSAGVWIGM 423
F F+A + VF ++G + G+I + L + T L V+I +
Sbjct: 361 IVIFKAFTAQVLVGVFRASGIPNVCFFIESGVIVFYTLPVAYLLVFYTNLSLPIVVFI-V 419
Query: 424 GLSNVISALIGFAWFLKGSWMRRI 447
L +I + F W+R I
Sbjct: 420 NLEEIIKNIFIIIEFFHDDWIREI 443
>pir||C81156 conserved hypothetical protein NMB0812 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226046|gb|AAF41225.1| (AE002434) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 459
Score = 74.5 bits (180), Expect = 2e-12
Identities = 85/442 (19%), Positives = 176/442 (39%), Gaps = 32/442 (7%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
+ L LA P+++ + QV DT G+ +L+A + G + A
Sbjct: 18 RLLTTLALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAAL 77
Query: 78 FAMVSQYIGAGEYKKASRVA--GSLYSLLL-MLSLLLAGIGIVISPFALRFIKVTPDVYP 134
M++Q GAG+ + G + L L + ++L + I+PF ++ ++ V
Sbjct: 78 NPMIAQLYGAGKTDEVGETGRQGIWFGLFLGVFGMVL--MWAAITPFR-NWLTLSDYVEG 134
Query: 135 YALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF-ILDM 193
+YM+ +P A+ + + + + V+ +LN+ L+ +F++ M
Sbjct: 135 TMAQYMLFTSLAMPAAMVHRALHAYTSSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGM 194
Query: 194 GVLGAAIATIISEGIGSIIGGYLLFTG-KVGIKISRDDL-----------RPDVNLYIKT 241
LG A G G F+ + I I++++ +PD ++ +
Sbjct: 195 PALGGA-------GCGLATMAVFWFSALALWIYIAKENFFRPFGLTAKFGKPDWAVFKQI 247
Query: 242 FKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTM 301
+KIG P + + F + +I +G A + L+ ++ + A
Sbjct: 248 WKIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVR 307
Query: 302 VGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVV 361
+G ++G + RAR ++ ++ +++ V L + FR + + NDP ++ + V+
Sbjct: 308 IGFSLGRREFSRARYISGVSLVLGWMLAVITVLSLVLFRSPLVSMYNNDPAVLSIAATVL 367
Query: 362 KYFAASFPFFGIFSAVTNVFASAGH--TKKNLILGIIRLWGLRIPLSYYLGTTLGDSA-G 418
+ P F+ +A G+ TK + + WG + Y L G
Sbjct: 368 LFAGLFQP--ADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFNMGIYG 425
Query: 419 VWIGMGLSNVISALIGFAWFLK 440
W + ++++ A I W L+
Sbjct: 426 FWTAL-IASLTIAAIALVWCLE 446
>pir||T02512 hypothetical protein T19C21.18 - Arabidopsis thaliana
>gi|3395439|gb|AAC28771.1| (AC004683) hypothetical
protein [Arabidopsis thaliana]
Length = 539
Score = 73.7 bits (178), Expect = 4e-12
Identities = 103/452 (22%), Positives = 183/452 (39%), Gaps = 52/452 (11%)
Query: 14 GSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPG---TVWPLLWFMMSLG 70
G I ++ +A P + + +L DT ++ +G +EL+A G +V+ L+ + ++
Sbjct: 74 GKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVP 133
Query: 71 SGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVI-------SPFAL 123
V F Q I A + + + + + +L AG+GI S F +
Sbjct: 134 LLNVTTSFVAEEQAIAAKDDNDSIETSKKVLPSVSTSLVLAAGVGIAEAIALSLGSDFLM 193
Query: 124 RFIKV---TPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
+ + +P P + + P+ + L R DT TP+ + +LN
Sbjct: 194 DVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQG-AFRGFKDTTTPLYAVVAGNVLN 252
Query: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKV----GIKISRDDLRPDVN 236
+LDP+ IF+L G+ GAA AT+ISE + + I + L V IK+ R N
Sbjct: 253 AVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGR------AN 306
Query: 237 LYIKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQ 296
Y+K+ + + ++ F L + G A + I + + D ++
Sbjct: 307 QYLKSGGLLIGRTV---ALLVPFTLATSLAAQNGPTQMAGHQIVLEIWLAVSLLTDALAI 363
Query: 297 AMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGT----LLFMAFREEIFRFFINDPG 352
A +++ YK+AREV + L GT +LF+ F E F D
Sbjct: 364 AAQSLLATTYSQGEYKQAREVLFGVLQVG---LATGTGLAAVLFITF-EPFSSLFTTDSE 419
Query: 353 IIKESEKVVKYFAAS-------FPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPL 405
++K + + A S F G++ V++ F A ++ +I+G I L
Sbjct: 420 VLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSD-FGFAAYSM--VIVGFIS------SL 470
Query: 406 SYYLGTTLGDSAGVWIGMGLSNVISALIGFAW 437
+ AG+W G+ L + + G AW
Sbjct: 471 FMLVAAPTFGLAGIWTGLFLFMALRLVAG-AW 501
>pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951609|gb|AAG08679.1|AE004942_2
(AE004942) hypothetical protein [Pseudomonas aeruginosa]
Length = 488
Score = 73.7 bits (178), Expect = 4e-12
Identities = 103/438 (23%), Positives = 175/438 (39%), Gaps = 22/438 (5%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVVAG 77
K +LRLA PLI L V TDT + KLG L+A G F+ + G V A
Sbjct: 10 KAILRLAGPLIAAQLAYVAMVFTDTVMMGKLGPDALAAGGLGAVSYAFVSTFCVGVVAAV 69
Query: 78 FAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYAL 137
+V+ G + A+ A S + L+L + + P L F + P A+
Sbjct: 70 GNLVAIRHGCDDAAGAAAAARSGLWVGAALALAAGLLLWNLRPLLLVFGQ-APQTVDGAM 128
Query: 138 KYMIAIFAGVP---VALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFIL--- 191
+++ ++ +P + L F + AG + +++L + N+ L+ FI L
Sbjct: 129 QFLHSLTFALPGYMAFMVLRGFTSAIDRAGPV---MAISVLGALANLALNYSFIEGLFGL 185
Query: 192 -DMGVLGAAIAT-IISEGIGSIIGGYL-LFTGKVGIKISRDDLRPDVNLYIKTFKIGLPA 248
+G+ G + T ++ + ++ Y+ L + R RP + + ++GLP
Sbjct: 186 PRLGLAGIGLVTALVMNCMPLLLALYIRLQPAYAEYSLLRGLGRPQRAMVEEILRLGLPI 245
Query: 249 SIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGA 308
+ S F + + G A A + I + F G+S A +GQ+ GA
Sbjct: 246 GGTYAVESGMFTVATLCMGIIGDHALAAHQIAIQAVYVAFMVPVGLSYATTYRIGQHFGA 305
Query: 309 ENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFIN-DPGIIKESEKVVKYFAAS 367
AR + L ++ LF E I F++ D +E + A
Sbjct: 306 GRLLEARRAGRVGIGFGALCMLLFAGLFWWMPEAIIGLFLDRDAPANREVAAMAVSLLAI 365
Query: 368 FPFFGIFSAVTNVFASA----GHTKKNLILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIG 422
+F +F NV A + ++G+ W + +PL+ L G +AGVW G
Sbjct: 366 AAWFELFDGTQNVAMGAIRGLKDARTTFLVGLACYWLVGVPLACLLAFAAGWGAAGVWWG 425
Query: 423 M--GLS-NVISALIGFAW 437
+ GL+ I + F W
Sbjct: 426 LAGGLACAAIGLTLAFEW 443
>pir||T50435 conserved hypothetical protein SPCC4B3.13 [imported] - fission
yeast (Schizosaccharomyces pombe)
>gi|6434021|emb|CAB60687.1| (AL132870) conserved
hypothetical protein [Schizosaccharomyces pombe]
Length = 539
Score = 73.4 bits (177), Expect = 5e-12
Identities = 92/428 (21%), Positives = 175/428 (40%), Gaps = 30/428 (7%)
Query: 20 LLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPG-TVWPLLWFMMSLGSGFVVAGF 78
L++ A P+++ +L+Q +T F L LG++EL+A + ++ G V A
Sbjct: 100 LIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALD 159
Query: 79 AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYALK 138
+ +Q G+G Y+ + ++LL++ + I I L F++ P +A K
Sbjct: 160 TVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILL-FLRQDPLTCMFAAK 218
Query: 139 YMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFI--LDMGVL 196
YM + P L+ G + + + +NI L+ +F++ + G L
Sbjct: 219 YMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFL 278
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIK-----ISRDDLRPDVNLYIKTFKIGLPASIG 251
GA +A ++ + S +++ KV + SR+ L+ + ++ +P I
Sbjct: 279 GAPVAVALT--LWSACAVLIIYIMKVNGRQAWGGFSREALKN----WGPLCRLAVPGVIM 332
Query: 252 DSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAENY 311
+ + F L+ GT A+ ++ + + + A G++ A T VG IGA N
Sbjct: 333 ICSEYWAFELVTFASGVLGTTELASMSVLSTTSTLSYNLAFGVAAAAATRVGNLIGAGNT 392
Query: 312 KRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPFF 371
K A+ ++ I V ++ R F +D + VV A P
Sbjct: 393 KLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSD-------KDVVALVATIIPLV 445
Query: 372 GIFSAVTNVFASAGHTKKNL-------ILGIIRLWGLRIPLSYYLGTTLG-DSAGVWIGM 423
+ + N AG + ++ I + L +P++ L L G+WIG+
Sbjct: 446 ALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGLWIGI 505
Query: 424 GLSNVISA 431
G + +I A
Sbjct: 506 GAAILIIA 513
>pir||G82364 DNA-damage-inducible protein F VC0090 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654488|gb|AAF93268.1|
(AE004100) DNA-damage-inducible protein F [Vibrio
cholerae]
Length = 454
Score = 71.4 bits (172), Expect = 2e-11
Identities = 81/373 (21%), Positives = 158/373 (41%), Gaps = 39/373 (10%)
Query: 15 SIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFM--MSLGSG 72
++ + +L +A P++++N+ + L D A +G E + W++ ++LGS
Sbjct: 15 NVHRQVLAIALPMVLSNITVPLLGLVDA---AVIGHLEHA---------WYLGGVALGST 62
Query: 73 FVVAGF-----------AMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPF 121
+ F + +Q GA ++ +RV + L L+ L ++
Sbjct: 63 MISVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAEL 122
Query: 122 ALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNI 181
F + +V YA Y P AL L + + P+ + I+T + NI
Sbjct: 123 IFHFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNI 182
Query: 182 ILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIKT 241
+LD + + L + V GAAIA++I++ G + G LL G+ R P +I +
Sbjct: 183 VLDLLLVLGLGLKVEGAAIASVIADYAGLLFG--LLCVGRYW----RQHQLPAPFSFIPS 236
Query: 242 FKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFAT-----YTITNRLTNFMFAFA---DG 293
L + + + F L + ++++ T A L +F+ + DG
Sbjct: 237 LTKELSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDG 296
Query: 294 ISQAMGTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGI 353
+ AM MVG+ IGA++ ++ R I + +I + +L+F+ F ++ + N P +
Sbjct: 297 FAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSV 356
Query: 354 IKESEKVVKYFAA 366
+E + + A
Sbjct: 357 QATAEHYLPWLVA 369
>pir||T08969 hypothetical protein F19B15.170 - Arabidopsis thaliana
>gi|4972060|emb|CAB43928.1| (AL078470) putative protein
[Arabidopsis thaliana] >gi|7269812|emb|CAB79672.1|
(AL161574) putative protein [Arabidopsis thaliana]
Length = 532
Score = 71.0 bits (171), Expect = 3e-11
Identities = 84/430 (19%), Positives = 168/430 (38%), Gaps = 34/430 (7%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFM-MSLGSGFVVA 76
K+L LA+P+ + LV + + F+L +LG EL+A S+ SG +
Sbjct: 58 KSLFTLAFPIAVTALVLYLRSAVSMFFLGQLGDLELAAGSLAIAFANITGYSVLSGLALG 117
Query: 77 GFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPYA 136
+ SQ GA +K S LL+ + ++ + + ++ ++ PD+ A
Sbjct: 118 MEPLCSQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVGKISV-YLHQDPDIAKLA 176
Query: 137 LKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIFILDMGVL 196
Y+I + LH LRA G ++ + ++ + + L +G+
Sbjct: 177 QTYLIFSLPDLLTNTLLHPIRIYLRAQGIIHPVTLASLSGAVFHLPANLFLVSYLRLGLT 236
Query: 197 GAAIATIISEGIGSIIGGYLLFTGKVGIKISR--DDLRPDVNLYIKTFKIGLPASIGDST 254
G A+A+ I+ ++ + + G+ D R + ++ P+ +
Sbjct: 237 GVAVASSITNIF--VVAFLVCYVWASGLHAPTWTDPTRDCFRGWAPLLRLAGPSCVSVCL 294
Query: 255 NSFGF----VLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
+ + VL ++ TVA I + T+F++ F +S A+ T VG +GA
Sbjct: 295 EWWWYEIMIVLCGLLVNPRSTVAAMGVLI--QTTSFLYVFPSSLSFAVSTRVGNELGANR 352
Query: 311 YKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYFAASFPF 370
K A+ A A+ + + + R R F D +++++ AA+ P
Sbjct: 353 PKTAKLTATVAIVFAAVTGIIAAAFAYSVRNAWGRIFTGD-------KEILQLTAAALPI 405
Query: 371 FGIFSAVTNVFASAGHTKKNLILGIIR-------LWGLRIPLSYYLGTTLGDSAGVWIGM 423
G+ G+ + + G++R + + Y +G + G W G+
Sbjct: 406 LGL--------CEIGNCPQTVGCGVVRGTARPSTAANVNLGAFYLVGMPVAVGLGFWAGI 457
Query: 424 GLSNVISALI 433
G + + L+
Sbjct: 458 GFNGLWVGLL 467
>sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF INTERGENIC REGION
>gi|1742737|dbj|BAA15430.1| (D90809) ORF_ID:o319#7;
similar to [SwissProt Accession Number P37340]
[Escherichia coli] >gi|1742747|dbj|BAA15439.1| (D90810)
ORF_ID:o319#7; similar to [SwissProt Accession Number
P37340] [Escherichia coli]
Length = 457
Score = 70.2 bits (169), Expect = 4e-11
Identities = 82/436 (18%), Positives = 177/436 (39%), Gaps = 29/436 (6%)
Query: 18 KTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSL-GSGFVVA 76
+ LL LA P+I+ + Q DT ++++A + +W L G G ++A
Sbjct: 9 RLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVA-IGTSIWLPAILFGHGLLLA 67
Query: 77 GFAMVSQYIGAGEYKKASRVA------GSLYSLLLMLSLLLAGIGIVISPFALRFIK-VT 129
+++Q G+G ++ + S+L+ML L AG + +R ++ +
Sbjct: 68 LTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAG-------YIIRSMENID 120
Query: 130 PDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF 189
P + A+ Y+ A+ G P L TK + + + +++NI ++ +FI+
Sbjct: 121 PALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIY 180
Query: 190 ----ILDMGVLGAAIATIISEGIG--SIIGGYLLFTGKVGIKISRDDLRPDVNLYIKTFK 243
+ ++G +G +AT + +++ I+ + +PD + + +
Sbjct: 181 GHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ 240
Query: 244 IGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVG 303
+GLP ++ F ++ ++ G V A + I ++ MF ++ A+ VG
Sbjct: 241 LGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVG 300
Query: 304 QNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKY 363
+G + A+ A + + + ++ RE+I + ++P ++ + ++
Sbjct: 301 YRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLL 360
Query: 364 FAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLGTT------LGDSA 417
A I + + T+ + W L +P Y L T +G A
Sbjct: 361 AAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMG-PA 419
Query: 418 GVWIGMGLSNVISALI 433
G WIG + +A++
Sbjct: 420 GFWIGFIIGLTSAAIM 435
>gi|11428103 hypothetical protein FLJ10847 [Homo sapiens]
Length = 582
Score = 69.1 bits (166), Expect = 1e-10
Identities = 67/329 (20%), Positives = 137/329 (41%), Gaps = 11/329 (3%)
Query: 123 LRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNII 182
L + PDV Y+ +P L G + + ++N +
Sbjct: 256 LLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNAL 315
Query: 183 LDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDD----LRPDVNLY 238
+ +F+ L +GV+G+A+A +IS+ ++ LLF +G K+ + + +
Sbjct: 316 ANYLFLHQLHLGVIGSALANLISQYTLAL----LLFLYILGKKLHQATWGGWSLECLQDW 371
Query: 239 IKTFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAM 298
++ +P+ + + + + + + G V +I L ++ G S A
Sbjct: 372 ASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAIIVYMVPAGFSVAA 431
Query: 299 GTMVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESE 358
VG +GA + ++AR+ + ++ L V ++L ++ ++ + F D II
Sbjct: 432 SVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVA 491
Query: 359 KVVKYFAASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLW--GLRIPLSYYLGTTLGDS 416
+VV +A S F + V +G+ K I+ I + GL I ++ TTLG
Sbjct: 492 QVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLG-V 550
Query: 417 AGVWIGMGLSNVISALIGFAWFLKGSWMR 445
G+W G+ + V A+ + ++ +W +
Sbjct: 551 MGLWSGIIICTVFQAVCFLGFIIQLNWKK 579
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.144 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155185865
Number of Sequences: 2977
Number of extensions: 6317429
Number of successful extensions: 20597
Number of sequences better than 1.0e-10: 64
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 20408
Number of HSP's gapped (non-prelim): 74
length of query: 449
length of database: 189,106,746
effective HSP length: 54
effective length of query: 395
effective length of database: 156,788,448
effective search space: 61931436960
effective search space used: 61931436960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)