BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1439 (PAB1439) DE:dinF related
(468 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Ors... 913 0.0
pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii ... 790 0.0
pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus a... 526 e-148
pir||E71172 probable damage-inducible protein - Pyrococcus horik... 517 e-145
gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1] 238 1e-61
pir||E72471 probable DNA-damage-inducible protein APE2414 - Aero... 227 3e-58
pir||H70158 conserved hypothetical integral membrane protein BB0... 214 2e-54
dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus h... 192 7e-48
sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGI... 178 1e-43
pir||H72331 conserved hypothetical protein - Thermotoga maritima... 175 1e-42
dbj|BAB05882.1| (AP001514) unknown conserved protein in others [... 173 5e-42
pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi... 170 3e-41
pir||G71191 probable DNA damage-inducible protein - Pyrococcus h... 170 3e-41
pir||G72220 conserved hypothetical protein - Thermotoga maritima... 162 8e-39
pir||A82049 conserved hypothetical protein VC2671 [imported] - V... 162 1e-38
sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir... 150 2e-35
pir||A69905 conserved hypothetical protein yoeA - Bacillus subti... 147 3e-34
gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Ha... 146 5e-34
gi|11499066 conserved hypothetical protein [Archaeoglobus fulgid... 145 1e-33
emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae] 143 4e-33
pir||C69140 conserved hypothetical protein MTH314 - Methanobacte... 133 4e-30
dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus h... 132 8e-30
pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp... 129 7e-29
pir||H69837 conserved hypothetical protein yisQ - Bacillus subti... 126 5e-28
pir||G82392 conserved hypothetical protein VCA0989 [imported] - ... 125 8e-28
pir||E82296 conserved hypothetical protein VC0650 [imported] - V... 116 4e-25
gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Ha... 116 5e-25
pir||G64614 conserved hypothetical integral membrane protein HP0... 113 4e-24
pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeol... 112 8e-24
pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (... 110 3e-23
pir||G70172 conserved hypothetical integral membrane protein BB0... 109 9e-23
sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir... 106 4e-22
pir||H64667 conserved hypothetical integral membrane protein HP1... 104 3e-21
dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Acc... 101 2e-20
sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL IN... 101 2e-20
gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pum... 101 2e-20
pir||A71849 hypothetical protein jhp1110 - Helicobacter pylori (... 101 3e-20
pir||E82175 conserved hypothetical protein VC1631 [imported] - V... 100 3e-20
pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (str... 99 7e-20
pir||H81402 probable integral membrane protein Cj0560 [imported]... 99 1e-19
dbj|BAB07764.1| (AP001520) unknown conserved protein in others [... 99 1e-19
gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Ha... 98 3e-19
pir||F69906 conserved hypothetical protein yojI - Bacillus subti... 96 1e-18
dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus] 93 6e-18
pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelic... 91 2e-17
gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane ... 91 3e-17
pir||C81156 conserved hypothetical protein NMB0812 [imported] - ... 91 3e-17
pir||D81950 probable transmembrane efflux protein NMA1022 [impor... 90 6e-17
dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus h... 89 1e-16
pir||B83476 probable transporter PA1361 [imported] - Pseudomonas... 87 3e-16
pir||H82186 probable multidrug resistance protein NorM VC1540 [i... 86 9e-16
sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF ... 79 9e-14
pir||H75559 conserved hypothetical protein - Deinococcus radiodu... 79 9e-14
pir||F70172 conserved hypothetical integral membrane protein BB0... 77 4e-13
pir||A64924 probable membrane protein ydhE precursor - Escherich... 77 5e-13
gb|AAD30646.1|AC006085_19 (AC006085) Hypothetical protein [Arabi... 77 5e-13
gi|8922709 hypothetical protein FLJ10847 [Homo sapiens] >gi|7023... 76 1e-12
pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella... 75 2e-12
pir||T50435 conserved hypothetical protein SPCC4B3.13 [imported]... 73 7e-12
pir||G70693 probable dinF protein - Mycobacterium tuberculosis (... 73 9e-12
pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas... 71 4e-11
gb|AAC67367.1| (AC005499) hypothetical protein [Arabidopsis thal... 70 5e-11
gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporte... 69 8e-11
dbj|BAA97535.1| (AB028606) emb|CAA66809.1~gene_id:F16F17.3~stron... 69 8e-11
dbj|BAB10095.1| (AB023028) gb|AAF34304.1~gene_id:K20J1.11~strong... 69 8e-11
>pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Orsay)
>gi|5458832|emb|CAB50319.1| (AJ248287) dinF related
[Pyrococcus abyssi]
Length = 468
Score = 913 bits (2334), Expect = 0.0
Identities = 468/468 (100%), Positives = 468/468 (100%)
Query: 1 MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV 60
MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV
Sbjct: 1 MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV 60
Query: 61 AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI 120
AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI
Sbjct: 61 AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI 120
Query: 121 LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF 180
LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF
Sbjct: 121 LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF 180
Query: 181 LNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY 240
LNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY
Sbjct: 181 LNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY 240
Query: 241 SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM 300
SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM
Sbjct: 241 SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM 300
Query: 301 GTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESK 360
GTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESK
Sbjct: 301 GTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESK 360
Query: 361 IVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF 420
IVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF
Sbjct: 361 IVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF 420
Query: 421 LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID
Sbjct: 421 LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
>pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii
>gi|3256981|dbj|BAA29664.1| (AP000002) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 790 bits (2018), Expect = 0.0
Identities = 392/468 (83%), Positives = 431/468 (91%), Gaps = 9/468 (1%)
Query: 1 MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV 60
MS+EK K MR+EILEGPIE TL KLAWPI++NNLIQVLYNITDTFWLGKLGR ALSAPGV
Sbjct: 14 MSIEKAKMMRKEILEGPIEGTLFKLAWPIIINNLIQVLYNITDTFWLGKLGRAALSAPGV 73
Query: 61 AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI 120
+WPIIGTLMALG+GFTMAGFSIVGQYIGAG+F+KANRSAGALFSL++FFST SA++SILI
Sbjct: 74 SWPIIGTLMALGIGFTMAGFSIVGQYIGAGNFEKANRSAGALFSLIIFFSTASAILSILI 133
Query: 121 LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF 180
LP AL FM+VT SIRPYAY+Y+++IFAGVP+SFLFM FN LMRA GDT+TPVKIS +TVF
Sbjct: 134 LPYALSFMHVTSSIRPYAYKYSLIIFAGVPMSFLFMTFNVLMRAIGDTRTPVKISLITVF 193
Query: 181 LNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY 240
LNIILDPIFIFI LGV GAALATVLSN+VGT+IGV+IL SG+AGLKI+ E+LKPDWKFY
Sbjct: 194 LNIILDPIFIFILNLGVEGAALATVLSNSVGTVIGVRILTSGRAGLKISRENLKPDWKFY 253
Query: 241 SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM 300
SKIVR+GLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM
Sbjct: 254 SKIVRIGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM 313
Query: 301 GTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESK 360
TMVAQN+GAE YERAKVIAERTMV+NF IAG AVL+IG+FRVPIFKVFL+DP VIAESK
Sbjct: 314 STMVAQNIGAENYERAKVIAERTMVINFLIAGIAVLIIGIFRVPIFKVFLNDPMVIAESK 373
Query: 361 IVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF 420
IVLEYFLISVPFFNGIFVVVTG FSS+GHTVKSM+MSMLRLWGFRIPLSY FGY+P
Sbjct: 374 IVLEYFLISVPFFNGIFVVVTGAFSSSGHTVKSMIMSMLRLWGFRIPLSYVFGYVPT--- 430
Query: 421 LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
A+LF FTSRGVFFGMGLSNFLAAI+GLAWFLKGSWMR+II+
Sbjct: 431 ------FAKLFGFTSRGVFFGMGLSNFLAAIVGLAWFLKGSWMRKIIE 472
>pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus abyssi (strain
Orsay) >gi|5458833|emb|CAB50320.1| (AJ248287) DNA
DAMAGE-INDUCIBLE PROTEIN. [Pyrococcus abyssi]
Length = 449
Score = 526 bits (1341), Expect = e-148
Identities = 258/466 (55%), Positives = 339/466 (72%), Gaps = 17/466 (3%)
Query: 3 MEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAW 62
M ++ R EIL G IEKTLL+LA+P+++NNL+QV+YN+TDTFWL KLGR LSAPG W
Sbjct: 1 MANIERTREEILSGSIEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVW 60
Query: 63 PIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILP 122
P++ +M+LG GF +AGF++V QYIGAG++KKA+R AG+L+SL+L S L A I I+I P
Sbjct: 61 PLLWFMMSLGSGFVVAGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISP 120
Query: 123 LALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLN 182
AL F+ VTP + PYA +Y I IFAGVPV+ FN ++RA GDTKTPVK++ LT+ LN
Sbjct: 121 FALRFIKVTPDVYPYALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILN 180
Query: 183 IILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSK 242
IILDP+FIFI +GVLGAA+AT++S +G+IIG +L +GK G+KI+ +DL+PD Y K
Sbjct: 181 IILDPVFIFILDMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRDDLRPDVNLYIK 240
Query: 243 IVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGT 302
++GLP+SIG S NSFGFV+L RII +G V +A Y IT RL NF+ + + GIS AMGT
Sbjct: 241 TFKIGLPASIGDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
Query: 303 MVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIV 362
MV QN+GAE Y+RA+ +A + M NF I F L+ FR IF+ F++DP +I ES+ V
Sbjct: 301 MVGQNIGAENYKRAREVAIKAMATNFLILVFGTLLFMAFREEIFRFFINDPGIIKESEKV 360
Query: 363 LEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLG 422
++YF S PFF GIF VT VF+SAGHT K++++ ++RLWG RIPLSY G T LG
Sbjct: 361 VKYFAASFPFF-GIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-----TTLG 414
Query: 423 IRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
S GV+ GMGLSN ++A+IG AWFLKGSWMRRI++
Sbjct: 415 -----------DSAGVWIGMGLSNVISALIGFAWFLKGSWMRRIVE 449
>pir||E71172 probable damage-inducible protein - Pyrococcus horikoshii
>gi|3256983|dbj|BAA29666.1| (AP000002) 449aa long
hypothetical damage-inducible protein [Pyrococcus
horikoshii]
Length = 449
Score = 517 bits (1317), Expect = e-145
Identities = 248/466 (53%), Positives = 338/466 (72%), Gaps = 17/466 (3%)
Query: 3 MEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAW 62
M ++ R EIL G IEKTL++LA+P+++NNL+QV+YN+TDTFWL KLGR LSAPG W
Sbjct: 1 MANIEKAREEILSGSIEKTLIRLAYPLIINNLVQVMYNLTDTFWLAKLGRAELSAPGTVW 60
Query: 63 PIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILP 122
P++ ++++G GF +AGF++V QY+GAG++KKA++ AG+L+SL+L ST+ A + ILI P
Sbjct: 61 PLLWFMISIGSGFAVAGFAMVSQYVGAGEYKKASKVAGSLYSLLLALSTIIAFLGILISP 120
Query: 123 LALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLN 182
LAL F+ VTP + PYA +Y ++F G+P++ FN ++RA GDTKTPVK++ LT+ LN
Sbjct: 121 LALKFIKVTPDVYPYALKYMKIVFGGIPIALTLYAFNFILRAVGDTKTPVKVNILTILLN 180
Query: 183 IILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSK 242
IILDP+FIF GVLGAALATV+S G++IG +L +G+ +K++LEDL PD K Y K
Sbjct: 181 IILDPVFIFGLNYGVLGAALATVISEGTGSVIGGYLLFTGRVSIKLSLEDLSPDIKLYIK 240
Query: 243 IVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGT 302
++GLP+SI +S NSFGFV+L RII +G V +A Y IT RL NF+ + + GIS AMGT
Sbjct: 241 TFKIGLPASISESTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGT 300
Query: 303 MVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIV 362
MV QNVGAEKYERAK IA + M+ NF I F ++ +FR IF+ F++DP ++ ES+ V
Sbjct: 301 MVGQNVGAEKYERAKEIAIKAMLTNFLILIFGTMLFIIFREEIFRFFINDPGILKESEKV 360
Query: 363 LEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLG 422
++YF S PFF GIF VT VF+SAGHT K++ + ++RLWG RIPLSY +LG
Sbjct: 361 VKYFAASFPFF-GIFSAVTNVFASAGHTKKNLTLGLIRLWGLRIPLSY---------YLG 410
Query: 423 IRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRIID 468
+ S GV+ GMGLSN +AA++G WFLKGSWMRRI++
Sbjct: 411 KTLK-------DSAGVWIGMGLSNVIAALVGFLWFLKGSWMRRIVE 449
>gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1]
Length = 494
Score = 238 bits (601), Expect = 1e-61
Identities = 156/471 (33%), Positives = 238/471 (50%), Gaps = 38/471 (8%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
++ G I K L LA PIV+ NL Q YN+ DTFWLG+ +AL+A A+P++ L++L
Sbjct: 18 DLTSGRIGKPLFFLAMPIVITNLFQTAYNLADTFWLGQYNTDALAAISFAFPMVFLLISL 77
Query: 72 GMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
GMG ++AG +V QY GAG ++A +A + + S L I + L + +
Sbjct: 78 GMGISVAGSVLVAQYTGAGKDEQAEYAASQTVTFSVLASLLLGGIGYFFVEDFLSVVGAS 137
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
++ A Y V+ G+ F F VF ALMR GDT TP+ + +V LNI+LDP IF
Sbjct: 138 DAVLRPATSYMQVVALGLAAMFGFAVFIALMRGYGDTITPMLVMFGSVVLNIVLDPFLIF 197
Query: 192 IF---------------KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPD 236
+ +LG+ GAA+ATV S A+ +G+ I+ G G++I D+ PD
Sbjct: 198 GWTVVENAPLVGTVSFPRLGIQGAAIATVFSRALAFAVGLAIMFRGTRGVEINAADMLPD 257
Query: 237 WKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGI 296
+ ++VR+GLP+SI + + +L I+ F D AAY I TR+ + + + I
Sbjct: 258 LSYLRRLVRIGLPASIEGTGRALSMNLLLFIVATFPDHIVAAYGIGTRVFSVVFLPAIAI 317
Query: 297 SMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFL-----D 351
+ + TM QNVGA K +RA A + F + L++ + PI VF+ +
Sbjct: 318 ARGVETMTGQNVGAGKPDRAARAARLAATMLFGVLSVLGLIVYWYPEPIVSVFVGAGQEN 377
Query: 352 DPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYA 411
+VI L Y ++ F GI TG F AG T+ + +S++ L R PL++A
Sbjct: 378 SAQVIEAGSQFLRYVALTFGFI-GIARAYTGSFRGAGKTMVAAAISVITLGVIRFPLAWA 436
Query: 412 FGYIPAITFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSW 462
I LG S G++ +SN + AII AW+ +G+W
Sbjct: 437 -----TIGSLG------------SAGIWLSFAVSNVIGAIIAYAWYRRGTW 470
>pir||E72471 probable DNA-damage-inducible protein APE2414 - Aeropyrum pernix
(strain K1) >gi|5106118|dbj|BAA81429.1| (AP000064) 480aa
long hypothetical DNA-damage-inducible protein
[Aeropyrum pernix]
Length = 480
Score = 227 bits (572), Expect = 3e-58
Identities = 145/471 (30%), Positives = 222/471 (46%), Gaps = 22/471 (4%)
Query: 1 MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV 60
+ E + R + +GPI K +L LA PIV L+ D +LG++ E L+AP
Sbjct: 6 LDREALDRKRTWVTQGPIVKVILALATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAA 65
Query: 61 AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI 120
A P++ LG+G ++V Q IGA D+ A R A L L SAL IL
Sbjct: 66 ASPLLWLFAGLGIGINTTLSALVSQAIGARDYASAQRYASKLLGATLMLGAASALAIILT 125
Query: 121 LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF 180
A Y +V G+P FNA+M A+GDT+TP K+SAL+
Sbjct: 126 AETVFILQGFQGRSLEVALAYTLVEAVGMPFMLALFYFNAVMAASGDTRTPFKVSALSSI 185
Query: 181 LNIILDPIFIF----IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPD 236
LN+ILDPI IF + LG +GAA+ATVL+ A I +L+ G G ++ + PD
Sbjct: 186 LNVILDPILIFGLILLPPLGAVGAAVATVLARAAAVSIAFYLLLRGAPGFRV--KPSMPD 243
Query: 237 WKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGI 296
+ I+R+G P S+ + S GF+V+ I+ G AAY ++ +++ + S + G
Sbjct: 244 RQLIGHILRIGGPVSLQRLVVSMGFLVMMGIVARLGAPVVAAYNVSLVIIHIVQSATFGF 303
Query: 297 SMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVI 356
++A T+V QN+GA RA A + + F + + I R + +F EV
Sbjct: 304 NIATATVVGQNLGASNISRAVRAAYTGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEEVQ 363
Query: 357 AESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIP 416
++ ++ + +PF G F GV +G T + + RLW RIP +Y YI
Sbjct: 364 FYAERMISIVALGMPFL-GAFFTAMGVARGSGRTAFISALGIARLWLLRIPAAYTLVYI- 421
Query: 417 AITFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRII 467
++ GV+ M LSN +A + +AW +W + I+
Sbjct: 422 --------------YSLGDMGVWLAMTLSNIIAGTLAIAWVAGRTWAKPIV 458
>pir||H70158 conserved hypothetical integral membrane protein BB0473 - Lyme
disease spirochete >gi|2688416|gb|AAC66867.1| (AE001152)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 454
Score = 214 bits (539), Expect = 2e-54
Identities = 137/469 (29%), Positives = 234/469 (49%), Gaps = 22/469 (4%)
Query: 1 MSMEKVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV 60
MS +K K R IL G + K L +++PIV+ N+IQ Y++TD F++GKLG LSA +
Sbjct: 1 MSTDKSKT-RELILNGNLYKVLFLISFPIVITNIIQAFYDLTDMFYVGKLGAMPLSALSL 59
Query: 61 AWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILI 120
A P+ ++A+ MG S++ + IG G+F + +R AG L L S + +
Sbjct: 60 AGPVNFFIIAIAMGMATGSISLMSKCIGEGNFSRFSRYAGQLIVLNFVLSLFVTICAFFF 119
Query: 121 LPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVF 180
+ LD + V ++ + Y V +P+ FL + ++ A G+T + I
Sbjct: 120 IDHLLDLLGVKGELKELSRVYFYVTIFAIPIMFLSISITYILNAQGETILSMTIVLFANI 179
Query: 181 LNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY 240
+N ILDPI IF F +G+ GAA AT+ S + + + + GLKI L+DL D +
Sbjct: 180 VNFILDPILIFSFNMGITGAAWATLFSKLLTVVFYLFLTYRLNYGLKIHLKDLVIDIRSI 239
Query: 241 SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAM 300
+IV +GLPS+ GQ S F + I++ AAY +T +++F+ + GI +
Sbjct: 240 KEIVNLGLPSTFGQIMVSLSFFIFNYIVIEISPKFLAAYGLTNTIISFLFLPAMGIGTGI 299
Query: 301 GTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESK 360
++V QN+GA+K R + + ++ ++ AI ++ + I ++F +D EV+ +
Sbjct: 300 ISIVGQNLGAKKVNRVEEVLKKGFFISLAILLIINSIVIFNKQFILRLFTNDLEVLNYAN 359
Query: 361 IVLEYFLISV--PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAI 418
Y L++ F G+ V G +G T +M++ +RLW R+P+ + F Y
Sbjct: 360 ---NYLLLTTIGTFGYGLQQVFFGGLIGSGRTKIAMIVIFIRLWLIRLPVVFIFQY---- 412
Query: 419 TFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRII 467
F + + +SN+LA II +A+ W++ I+
Sbjct: 413 ------------FGIMENSLGYAFIISNYLAIIILIAFTCTRYWVKPIL 449
>dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 454
Score = 192 bits (483), Expect = 7e-48
Identities = 120/454 (26%), Positives = 222/454 (48%), Gaps = 21/454 (4%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKL-GREALSAPGVAWPIIGTLMA 70
+ EG I K ++ +WPI ++NL+Q Y ITD+ W+G L G AL A ++ ++ +++
Sbjct: 7 DFTEGSITKKMVVFSWPIFLSNLLQTSYQITDSLWVGNLLGASALGALSISATVVFMVLS 66
Query: 71 LGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNV 130
+G A +++ Q GA D S A ++ + L LI L +
Sbjct: 67 FIIGLNGATLTVLSQRQGAKDEAGLKASLNAFVFVLGLLAILLGLIGYFSASSILQLLGT 126
Query: 131 TPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFI 190
I P A Y + F G+ F + ++RA GD+++PV+ + V LNIILDP+ I
Sbjct: 127 PEEILPLAESYLKINFIGILFLFGYNFIGTVLRAMGDSRSPVRFIFIAVILNIILDPLMI 186
Query: 191 FIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPS 250
F LG+ GAA AT++S I G+ I KAG+ + + P+ +++ + ++GLP+
Sbjct: 187 AGFNLGIDGAAYATIVSQGTAFIYGL-IYSVRKAGVPFQIPYV-PEKRYFFVLFKLGLPA 244
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ S G + ++ FG+ A + RL + I + + A+ T+ QN+GA
Sbjct: 245 GLSMITISAGVTAILSVVTSFGEEAVAGFGAAQRLDSLIMLPALTLGSAVNTIAGQNIGA 304
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISV 370
K+ER + A++ +++ A+ L+ + ++F+ D +A + ++
Sbjct: 305 NKWERVRATAKQGVMLIIAVTLIIGLITFIGAQFFIRLFVRDEATVAFGAMYIQTIAFFY 364
Query: 371 PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAEL 430
PF GI V+ G+ ++G ++++++ W R PL+Y M++L
Sbjct: 365 PFL-GINFVLNGIVRASGAMFPVLLLNIISFWILRYPLTYW---------------MSDL 408
Query: 431 FNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMR 464
F RG+ GMG + ++++I ++ G+W +
Sbjct: 409 FG--ERGIALGMGFAFVVSSLIATGYYFLGNWRK 440
>sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGION
>gi|7474682|pir||D69939 conserved hypothetical protein
ypnP - Bacillus subtilis >gi|1256651|gb|AAA96645.1|
(L77246) 21% identity with the NADH-dehydrogenase
(ubiquinone) of Caenorhabditis elegans; putative
[Bacillus subtilis] >gi|2634591|emb|CAB14089.1| (Z99115)
similar to hypothetical proteins [Bacillus subtilis]
Length = 445
Score = 178 bits (447), Expect = 1e-43
Identities = 108/433 (24%), Positives = 215/433 (48%), Gaps = 4/433 (0%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKL-GREALSAPGVAWPIIGTLMA 70
+ +G + K L+ + PI++ N +QV + D+ W+G L G +AL A V+ I+ T+++
Sbjct: 5 DFTQGNVLKQLVLFSMPIMLGNALQVSFQFIDSLWIGNLLGAKALGAAAVSSTIVLTVLS 64
Query: 71 LGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNV 130
+G A +I+ Q G D K A L+ S + L L +
Sbjct: 65 FILGLNNATLTILSQQKGKDDIKGMASYINAFVVLLTGLSIGFGAAGFFLSELLLRLLKT 124
Query: 131 TPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFI 190
S+ P A Y + F G+ F + + ++RA GD+KTP++ A V LN +L P+FI
Sbjct: 125 PESMIPLAETYLQIQFIGILFLFGYNFISTVLRALGDSKTPLRFIAFAVVLNTVLAPLFI 184
Query: 191 FIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPS 250
+F++G+ GAA +T+LS + + G+ ++ K + ++ + P W+ + I+++G+P+
Sbjct: 185 SVFRMGIAGAAYSTILSQGIAFLYGLFYVIKHKL-VPFSIPRM-PKWEESALILKLGIPA 242
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ + G + + ++ +GD + + RL + IT + A+ +M QN+G
Sbjct: 243 GLQMMVITGGMMAIMSVVNSYGDHVVSGFGAVQRLDSIITLPAMAAGTAVNSMAGQNIGI 302
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISV 370
+R IA ++ + ++I VF + ++F+ +P+ +A + L++
Sbjct: 303 GNEKRVGTIARLGVIAVISCMLVIAVMIWVFGKYLIRLFISEPDAVAFGEQYLKWIAFFY 362
Query: 371 PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAEL 430
PF G+ V+ G+ +AG ++ +V++++ W R P + F +G+ I M+ L
Sbjct: 363 PFI-GVNFVLNGIVRAAGAMLQVLVLNLISFWVLRYPFTALFSAWLGQKGIGLGIGMSFL 421
Query: 431 FNFTSRGVFFGMG 443
F+ + +++ G
Sbjct: 422 FSSCAAFLYYRYG 434
>pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748)
conserved hypothetical protein [Thermotoga maritima]
Length = 464
Score = 175 bits (439), Expect = 1e-42
Identities = 125/458 (27%), Positives = 218/458 (47%), Gaps = 29/458 (6%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVA----WPIIGTLMALGM 73
I K L+KLA P + N++Q+L+ + DT +LG +A+S G++ W + L+A M
Sbjct: 18 IRKELIKLALPAMGENVLQMLFGMADTAFLGHYSWKAMSGVGLSNQVFWVVQVVLIAASM 77
Query: 74 GFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPS 133
G T+ + IGAG+ K A L +F + ++ L L F N+
Sbjct: 78 GATVT----IANAIGAGNRKAVRSLAWNSVFLAIFTGVILTALTPLSDVLINIFPNLEGE 133
Query: 134 IRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-- 191
I A Y VI +G + VF+A++R GDT+TP+ ++ LT FLNI LD IF
Sbjct: 134 IESSAKEYLKVILSGSMGFSIMAVFSAMLRGAGDTRTPMIVTGLTNFLNIFLDYAMIFGK 193
Query: 192 --IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLP 249
++GV GAA+AT+LS VG I ++ + ++ + P W +I+RVG P
Sbjct: 194 FGFPEMGVRGAAVATILSRFVGAGILTYVIFK-REEFQLRKGLVPPKWSSQKEILRVGFP 252
Query: 250 SSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVG 309
++I S G ++ I++ G YA + I + + + GIS+A+ T+V + G
Sbjct: 253 TAIENFVFSTGVLMFANILLIAGAEAYAGHRIGINVESLSFMPAFGISVAITTLVGRYNG 312
Query: 310 AEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLIS 369
E + + +++ ++I +F P+ ++F DP++I SK+ ++ +
Sbjct: 313 MGNKEHVLGVIRQGWILSLLFQVTVGIIIFLFPEPLIRIFTSDPQIIEISKLPVKIIGL- 371
Query: 370 VPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAE 429
FF I + G G+T+ M+++ + +W R+P+++ M +
Sbjct: 372 FQFFLAIDSTMNGALRGTGNTLPPMIITFISIWTARLPVAFV---------------MVK 416
Query: 430 LFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRII 467
F G + GM + + L +FL G W +R +
Sbjct: 417 YFQLGLLGAWIGMIADIIFRSTLKLLFFLSGKWEKRAV 454
>dbj|BAB05882.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 464
Score = 173 bits (433), Expect = 5e-42
Identities = 117/435 (26%), Positives = 219/435 (49%), Gaps = 15/435 (3%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLG-KLGREALSAPGVAWPIIGTLMALGMGFT 76
I K L L+ P ++ + LYN+ DT ++ +G E ++ +A+PI+ +M++
Sbjct: 15 IPKLLRSLSIPAMIGMFVMALYNVVDTIFISYAVGIEGVAGVTIAFPIMMIMMSMAGALG 74
Query: 77 MAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRP 136
+ G S++ + +G ++AN+ G + +++L S + + + +L AL T +
Sbjct: 75 IGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGATSVTQG 134
Query: 137 YAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLG 196
YA Y I G F N ++R+ G+ + + LNI+LD +FIF +G
Sbjct: 135 YATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFIFGLNMG 194
Query: 197 VLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSA 256
VLGA++ATV++ A T + ++ ++GK+ L + DL+ ++ VGLP+ + QS+
Sbjct: 195 VLGASIATVIAQASVTGLVLRYFLTGKSTLSLHWSDLRMKGSVIKEVCLVGLPAFVQQSS 254
Query: 257 NSFGFVVLTRIIMGFG-DVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYER 315
S + + +++ FG D + + R++ F+ GI AM +V N GA++Y R
Sbjct: 255 ASLMMIAINSMLLRFGSDFYVGVFGLVQRIMMFVMMPMMGIMQAMQPIVGYNYGAKQYSR 314
Query: 316 AK--VIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFF 373
+ V+ + F+I FA+L++ F + +VF D EVI ++ + + L V F
Sbjct: 315 LRETVMLGFKVATIFSIGIFALLML--FPEALLRVFTADREVI-QAGVSAMHILFCVTFL 371
Query: 374 NGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELFNF 433
G +V G++ S G +++++S+ R F IPL +I ++ + P+A++ +F
Sbjct: 372 IGAQIVAGGLYQSLGKPKQALILSLSRQIIFLIPLVLILPHIFGLSGVWWAFPIADVLSF 431
Query: 434 --------TSRGVFF 440
R VFF
Sbjct: 432 ILTVVLLYRDRNVFF 446
>pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi (strain Orsay)
>gi|5457798|emb|CAB49288.1| (AJ248284) DAMAGE-INDUCIBLE
PROTEIN [Pyrococcus abyssi]
Length = 463
Score = 170 bits (427), Expect = 3e-41
Identities = 126/462 (27%), Positives = 215/462 (46%), Gaps = 20/462 (4%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
I K L LAWP ++ N+ Q L N+ DT +G + AL A G+ + + + M +
Sbjct: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
Query: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPY 137
++V + +G +F++A+R A + L + + L M +
Sbjct: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IF 193
AY Y V+F P+ F+ F + +R GDTKTP+K++ L +N +LD + +F
Sbjct: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
Query: 194 KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIG 253
+LG +GAA A+ + + ++G+ + ++ K LK L DL + KI+R+G P+ +
Sbjct: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVL-DLSLRFDIIEKILRIGTPTMLE 242
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
+ SF + I+ FG + +A+ I R+ + + G S+A +V QN+GA+K
Sbjct: 243 RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKP 302
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFL--DDPEVIAESKIVLEYFLI--- 368
E A+ + + + V+ VF + + FL +DP A + + Y +I
Sbjct: 303 EEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGI 362
Query: 369 -SVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPM 427
+P G+ V++G AG T + ++ + FRI +Y G+ I L I
Sbjct: 363 SEIPL--GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT 420
Query: 428 AELFNFTSRGV---FFGMGLSNFLAAIIGLAW--FLKGSWMR 464
F F GV + GM L F+ A GL W F +G W +
Sbjct: 421 FPGFKFPGMGVIAAWIGMSLETFVTA--GLFWLVFKRGKWKK 460
>pir||G71191 probable DNA damage-inducible protein - Pyrococcus horikoshii
>gi|3258243|dbj|BAA30926.1| (AP000007) 463aa long
hypothetical DNA damage-inducible protein [Pyrococcus
horikoshii]
Length = 463
Score = 170 bits (426), Expect = 3e-41
Identities = 122/463 (26%), Positives = 218/463 (46%), Gaps = 26/463 (5%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
+ + L +LAWP ++ N+ Q L N+ DT +G + AL A G+ + + + M +
Sbjct: 4 LRRRLWELAWPAIMGNISQTLLNLVDTMIVGHVSAVALGAVGLGGQVSWFMFPIMMAIST 63
Query: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPY 137
++V + +G G++++A+R + L I + L M +
Sbjct: 64 GTLALVARRVGEGNYREASRITEQSMYIAFLIGIPVMLFGIFLGDEVLRIMGAKGEVLDI 123
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IF 193
AY Y ++F P+ F+ F + +R GDTKTP+K++ L +N ILD + +F
Sbjct: 124 AYSYLKILFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINGILDYLLVFGKLGFP 183
Query: 194 KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIG 253
KLG +GAA A+ + + ++G+ + ++ K LK LE K + KI+R+G P+ +
Sbjct: 184 KLGPVGAAWASGIGISSSFLVGLYLFLAHKLILKPVLE-FKLRFNIIEKILRIGTPTMLE 242
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
+ SF + I+ FG++ +A+ I R+ + + G S+A +V Q +GA K
Sbjct: 243 RGLFSFYNFLYVSIVARFGEIALSAHYIGLRVESIAYMPAFGFSIATSALVGQKLGARKP 302
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFL--DDPEVIAESKIVLEYFLI--- 368
+ A++ + + + A ++ F + + FL +DP A + + Y +I
Sbjct: 303 DEAELTVKEALKMTTAFMSTMAFILVAFPGYLTEPFLSHNDPNYSAVKSLAVIYLIIVGI 362
Query: 369 -SVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGY---IPAITFLGIR 424
+P G+ V++G AG T + ++ + FRI +Y G+ +P+ T +
Sbjct: 363 SEIPL--GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRIIPAYLLGFGFTVPSFTIGSLT 420
Query: 425 IPMAELFNFTSRGV---FFGMGLSNFLAAIIGLAW--FLKGSW 462
P F F GV + GM L F+ A GL W F +G W
Sbjct: 421 FPG---FKFEGLGVIAAWIGMSLETFITA--GLFWIVFRRGKW 458
>pir||G72220 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982278|gb|AAD36768.1|AE001810_7 (AE001810)
conserved hypothetical protein [Thermotoga maritima]
Length = 458
Score = 162 bits (406), Expect = 8e-39
Identities = 121/453 (26%), Positives = 223/453 (48%), Gaps = 30/453 (6%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
++L G K ++KL+ P+++ L+Q +YN+ D W+ LG AL+A G+ +P+ +++L
Sbjct: 11 KLLRGDPRKAIVKLSIPMMLAMLVQTIYNLADGIWVAGLGPYALAAIGLFFPVFMVIISL 70
Query: 72 GMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
G + S+V Q IG D + A+ +A L + LS + + + L F
Sbjct: 71 AAGIGVGASSVVSQKIGERDKEGADTAASVSILLSIVIGFLSIAVILPFISDILIFAGAQ 130
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
A Y++++ +P+ V N + R GD K + + LNI LDP+FI+
Sbjct: 131 GETLRLALEYSVILVYFIPLIMFNNVANGVFRGEGDAKRAMVAITIGSLLNIGLDPVFIY 190
Query: 192 IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSS 251
+F +G+ GAA ATV+S AV +++ + M K ++ LK D + +I+++G+P+S
Sbjct: 191 VFGMGIRGAAYATVVSIAVSSLL-IAYWMFFKKDTYVSFR-LKWDGEILKRILKIGIPAS 248
Query: 252 IGQSANSFGFVVLTRI-IMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVG- 309
+ Q + S VL + GD A + R++NF T G++MA+ ++ G
Sbjct: 249 LAQISMSVAIYVLNVFAVRSGGDYGVAVFTSAWRVINFGTVPLIGMAMAVTSVTGAAFGE 308
Query: 310 --AEKYERAKVIAERT-MVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEV---IAESKIVL 363
EK E A + A + V A+ F +L+ + +F + ++ + ++ +L
Sbjct: 309 RNGEKLETAHLYAVKLGFFVGLAVM-FTILIFAPYIARLFTYSQEGEKLYSDLVKALRIL 367
Query: 364 EYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGI 423
FL VPF G+F + +F G +KS++++++R ++ S+ F ++ +
Sbjct: 368 SLFLPGVPF--GMF--TSSMFQGVGQGLKSLIVTIMRTVIMQVVFSWLFVFV-------L 416
Query: 424 RIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAW 456
RI + GV++G+ L N +A I W
Sbjct: 417 RIGLV--------GVWWGIVLGNTTSAFITFNW 441
>pir||A82049 conserved hypothetical protein VC2671 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657264|gb|AAF95812.1|
(AE004332) conserved hypothetical protein [Vibrio
cholerae]
Length = 460
Score = 162 bits (405), Expect = 1e-38
Identities = 120/459 (26%), Positives = 228/459 (49%), Gaps = 40/459 (8%)
Query: 13 ILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALG 72
+L PI L ++ P++ + +++N+ DTF++ LG +AL+A +P+ + +
Sbjct: 19 LLSAPIPLVLRQMTVPMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCIT 78
Query: 73 MGFTMAGFSIVGQYIGAGDFKKANR-SAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
MG + + +G+ +G GD ++A R S+ L +L + S L + I PL L + +
Sbjct: 79 MGIGVGLSTCIGRLLGQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFL-LLGAS 137
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
+ P Y +V + +P+ L M N+ +RATGDTKTP KI L +N LDP+ IF
Sbjct: 138 HELIPLIKEYMVVWYLTIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIF 197
Query: 192 IF----KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKI--TLEDLKPDWKFYSKIVR 245
+ +LG+ GAA+A+ S +G +IG L+ + L +L L+ DW+ +I++
Sbjct: 198 GYGPFPELGIQGAAIASAFS-WLGALIGSLYLLIKREKLLAIPSLPHLRDDWQ---QILK 253
Query: 246 VGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVA 305
+G P+++ + N +L ++ G AAY T R+ + + + ++ A+ +A
Sbjct: 254 IGTPAALSTAMNPISGALLMIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMA 313
Query: 306 QNVGAEKYER--AKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVL 363
QN+GA+ R A + + F + F ++V +P+ +F + V + +L
Sbjct: 314 QNLGAQNPARSFAGLFLSLRFSLLFQLMVFIMMV--PLSIPLAALFSQEQAV----RDLL 367
Query: 364 EYFLISVPF---FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF 420
++L+ VP F G+ +++ ++ +K+ S +RL+ F +P ++ G
Sbjct: 368 WHYLLVVPVSYGFQGVVMMLVSALNALHQPLKAFQWSFMRLFVFTLPAAWIGG------- 420
Query: 421 LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLK 459
L+N G+F G+ + N L ++G + L+
Sbjct: 421 --------RLYNI--EGLFIGIAVGNILGGLLGYLYALR 449
>sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir||E64388 conserved
hypothetical protein homolog MJ0709 - Methanococcus
jannaschii >gi|1591425|gb|AAB98703.1| (U67517) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 450
Score = 150 bits (376), Expect = 2e-35
Identities = 103/421 (24%), Positives = 200/421 (47%), Gaps = 14/421 (3%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
EIL +K +++++ PI+V I+ +Y++ D+ W+ LG +AL+A G ++PI+ ++ A+
Sbjct: 5 EILLDDPKKAVIEVSKPIIVATFIESIYSLVDSIWVSGLGADALAAVGASFPILISIYAV 64
Query: 72 GMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
G ++ S + + +GA + ++A++ A L L L + L M
Sbjct: 65 SWGLSIGISSGIARRVGAKNKEEADKVANHAIILALIAGILYIIAVYPNLDTLFSLMGTY 124
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
+ A +Y+ ++ G + + + R G+TK + S + NIILDPIFI+
Sbjct: 125 GDCKSLAIKYSSILVLGTVIFTICDALYGIFRGEGNTKIVMIASVIGTLTNIILDPIFIY 184
Query: 192 IFKLGVLGAALATVLSNAVG-TIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPS 250
+ LG+ GA+ AT+++ + I+ ++ + + + L KPD K + ++RVG+PS
Sbjct: 185 MLNLGISGASYATLIAIIISLLILAYELFIKKSCYVTVKLSKFKPDLKIIADLIRVGIPS 244
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVT-YAAYVITTRLVNFITSISRGISMAMGTMVAQNVG 309
++ + + F ++T IIM GD A Y R+ F G++ +++ G
Sbjct: 245 ALIEITVAVSFFIMTSIIMMVGDSRGLAVYTGALRITEFGFIPMLGLASGATSVIGATYG 304
Query: 310 AEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIF-------KVFLDDPEVIAESKIV 362
A +E+ K T+ + + V +I + PI K + E + ++ +
Sbjct: 305 ARSFEKLKTAYFYTIKIGVLMEIIIVALI-MLLSPILAYLFTYTKTSMGIHEELVKALRI 363
Query: 363 LEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLG 422
+ +L+ PF + + +F G KS+++S+ R I +Y F I + G
Sbjct: 364 VPLYLLFTPF----ILTTSAMFQGIGKGEKSLIISIFRSLICHISYAYLFAVILGLGMFG 419
Query: 423 I 423
I
Sbjct: 420 I 420
>pir||A69905 conserved hypothetical protein yoeA - Bacillus subtilis
>gi|2634220|emb|CAB13720.1| (Z99113) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis] >gi|2634231|emb|CAB13730.1| (Z99114) similar
to hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 463
Score = 147 bits (367), Expect = 3e-34
Identities = 96/404 (23%), Positives = 196/404 (47%), Gaps = 9/404 (2%)
Query: 28 PIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGMGFTMAGFSIVGQY 86
P++++N++Q + + +G+ LG +A++A +P+ L++ +G ++GQ
Sbjct: 28 PLLLSNVLQSVGQLVGMMAVGRWLGVDAVAAVSSFFPLFFLLISFTIGIGSGSSILIGQA 87
Query: 87 IGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAYRYAIVIF 146
GA + ++ G + + A+I + L M ++ + YA ++F
Sbjct: 88 YGAKNEERLKAVVGTTLTFTFLLGVVLAVIGSIFTLDILRLMGTPENVIHVSANYARILF 147
Query: 147 AGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFI---FIF-KLGVLGAAL 202
+P FL+ + +R TGD+KTP ++ +NI L P+ I F F KLG+ G+A
Sbjct: 148 YAMPFMFLYFAYTTFLRGTGDSKTPFYTLIVSTVINIALLPVLILGMFGFPKLGIYGSAY 207
Query: 203 ATVLSNAVGTIIGVKILMSGKAGL---KITLEDLKPDWKFYSKIVRVGLPSSIGQSANSF 259
ATV+S ++ + L K L K LK D + ++R+G+P+SI S
Sbjct: 208 ATVISTIATFLVLMVYLRKRKHPLQFDKTVRRYLKMDKELLVLLLRLGVPASINMILVSL 267
Query: 260 GFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVI 319
+ + + +G AAY + ++ +++ + + +A+ AQ++GA +++R K +
Sbjct: 268 SEIAVISFVNHYGSNATAAYGVVNQVASYVQMPAVSLGIAVSIFAAQSIGANEFDRLKQV 327
Query: 320 AERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVV 379
+ +N+ I G +++I VF I +FL + E + + +L L S F G +
Sbjct: 328 IRVGIWLNYIIGGVLIILIYVFSHQILSLFLTEQESLYIAHRLLMTTLWSYLLF-GNAQI 386
Query: 380 VTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGI 423
++ ++G + V+S+ +WG +P+++ + + LG+
Sbjct: 387 ISATMRASGTVLWPTVISIFAIWGVEVPVAFVLSHYTKLEILGV 430
>gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Halobacterium sp.
NRC-1]
Length = 469
Score = 146 bits (365), Expect = 5e-34
Identities = 123/461 (26%), Positives = 203/461 (43%), Gaps = 31/461 (6%)
Query: 10 RREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLM 69
R EI G + + LL L P+VV + V+ I D FWLG++ R A+SA G+ P+IG L
Sbjct: 6 RDEITGGSLPRALLVLTAPLVVQQYVVVVQQIVDVFWLGRVSRNAVSAVGLVAPLIGLLA 65
Query: 70 ALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMN 129
T+ +V Q++GA D A RS G F + + L+++++L LA D +
Sbjct: 66 LATSVATIGCRVLVAQHVGADD-AAAARSTG--FHATVLVGAANLLLAVVVLWLAPDLVG 122
Query: 130 VTPS---IRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILD 186
V S + Y V G + + GD++ + I+ + V N++LD
Sbjct: 123 VLLSDEAVIQLGATYLTVTTVGRVFGGMSDTIESGFVGWGDSRMSMLINVVAVLTNVVLD 182
Query: 187 PIFIFIFKL------GVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFY 240
P + ++L G+ GAALAT + G + V L I DL
Sbjct: 183 PFLVVGWQLPGFAGYGIFGAALATAIGYVAGFTVAVAGLGVDSTSFTIGRADLGVSRDTV 242
Query: 241 SKIVRVGLPSSIGQSANSFGFVVLTRIIMGF-GDVTYAAYVITTRLVNFITSISRGISMA 299
++ VG+P + ++ +++ I+ G G AAY I R+ + + A
Sbjct: 243 RSLLSVGVPHAGQEAGRQIARLLVVAIVAGVAGSAGLAAYTIGARIATVAFVPAAAVGSA 302
Query: 300 MGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVP--IFKVFLDDPEVIA 357
+ ++V QNVGA +RA + AG AVL + + P I VF I
Sbjct: 303 VSSIVGQNVGAGNPDRA--TRATWLAAGATTAGMAVLGVAQYSSPATIVSVFAPTFSGIE 360
Query: 358 ESKIVLEYFLISVPFFN-GIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIP 416
+ V +++V ++ G+ + G F+ AG T SMV ++L+ WG R+P++ Y+
Sbjct: 361 LTYTVAYLQILAVGYWAFGLIYPIQGGFNGAGKTTVSMVATLLQYWGVRLPVAALGAYV- 419
Query: 417 AITFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWF 457
+F+ F+ + SN A+ A+F
Sbjct: 420 ------------VVFSVPVHAAFWAITASNVACAVGVTAYF 448
>gi|11499066 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451040|pir||F69433 conserved hypothetical protein
AF1471 - Archaeoglobus fulgidus
>gi|2649097|gb|AAB89777.1| (AE001001) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 447
Score = 145 bits (362), Expect = 1e-33
Identities = 116/448 (25%), Positives = 206/448 (45%), Gaps = 23/448 (5%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
E+L G +K +LKL+ P+VV+NLI LYN+ D W+ LG +ALSA G+ +PI +A+
Sbjct: 5 EVLTGDPKKAILKLSAPMVVSNLIFTLYNLVDGIWVAGLGPDALSAVGLFFPIFFVFIAI 64
Query: 72 GMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
G ++ S V + IGA + A +A ++ + S + +S++ L + F+
Sbjct: 65 SFGLSVGANSAVSRRIGAKRYDAACVAATLAVAMGILVS-IPMTLSVVFLNGVMVFLGAD 123
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
I A Y ++ G V ++ G+ + + +A LN++LDPIFI+
Sbjct: 124 GEILRLAVDYGSIMVLGSVFLVFSNVSAGILNGEGNARMAMYANAAGSLLNMVLDPIFIY 183
Query: 192 IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSS 251
+ G+ GAA+A+V+S A+ +I+ +SG++ ++ + F ++RVG+P+S
Sbjct: 184 LLGYGIAGAAIASVISMALSSIVFSFWFLSGRSYVRFRVAGWNLPTVF--DLLRVGMPAS 241
Query: 252 IGQSANSFGFVVLTRIIMGF-GDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ S F+++ R+++ G AAY RL+ F G+S A+ + GA
Sbjct: 242 LSMLTMSVAFMLINRVVIETGGSEGLAAYTSAWRLIQFGFVPLFGVSAALTAVSGAAYGA 301
Query: 311 EKYERAKVIAERTMVVNFAI--AGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLI 368
+ T+ + A+ A A++V ++ + + + V+ E +
Sbjct: 302 RNPRKIGESLNYTVKLLLAVDAAILALMVAFAPQIALIFTYTEVSAVMYEEIVRTIRIAA 361
Query: 369 SVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMA 428
V F + V + VF G +S +++LR F++ L Y +A
Sbjct: 362 FVLLFAPLGVSSSAVFQGMGKGERSFAITVLRAIVFQVSLCYV---------------LA 406
Query: 429 ELFNFTSRGVFFGMGLSNFLAAIIGLAW 456
F F GV G L L G +W
Sbjct: 407 VPFGFD--GVLLGFVLGEALGCFTGFSW 432
>emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae]
Length = 456
Score = 143 bits (357), Expect = 4e-33
Identities = 104/396 (26%), Positives = 180/396 (45%), Gaps = 6/396 (1%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMA 70
+++ GPI +LL +PI+++N+ Q LYN D +G+ LG+E+L+A G I ++
Sbjct: 8 DLIHGPILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVG 67
Query: 71 LGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNV 130
+G ++ +Y GA +F K + A + L S L L+ L L L +++
Sbjct: 68 FTLGVGNGMGIVIARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQYLDT 127
Query: 131 TPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFI 190
I P +Y+Y +I V VSF + +F L+R+ GD+ + + +N++LD FI
Sbjct: 128 PAEILPQSYQYISMIVTCVGVSFAYNLFAGLLRSIGDSLAALGFLIFSALVNVVLDLYFI 187
Query: 191 FIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPS 250
LGV A LAT++S + ++ + L + K D Y+ ++ GL
Sbjct: 188 TQLHLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADLLEQGLAM 247
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ S S G V+L + FG V +A R++ F IS +M T +QN+GA
Sbjct: 248 GLMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQNLGA 307
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFL---DDPEVIAESKIVLEYFL 367
++ +R ++ + A F V + F P FL D +I + L+
Sbjct: 308 KRPDRIVQGLRIGSRLSISWAVF-VCIFLFFASPALVSFLASSTDGYLIENGSLYLQISS 366
Query: 368 ISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWG 403
P + + ++ G + +V S + L G
Sbjct: 367 TFYPILS-LLLIYRNCLQGLGQKILPLVSSFIELIG 401
>pir||C69140 conserved hypothetical protein MTH314 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621368|gb|AAB84820.1| (AE000816) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 452
Score = 133 bits (332), Expect = 4e-30
Identities = 109/453 (24%), Positives = 204/453 (44%), Gaps = 29/453 (6%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
EI+ G + L+KL+ P++V L+ +YN+ D W+ LG EAL+A G PI L+ L
Sbjct: 8 EIIRGDPRRALIKLSGPLIVAMLLTSIYNLVDAVWVAGLGGEALAAIGFVTPIYMILVGL 67
Query: 72 GMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVT 131
G S V + +GAGD + N SA + L S + +I ++L L +
Sbjct: 68 SNGLGAGAASSVSRCLGAGDEEGMNNSASHTIIITLAVSIILTVIIEILLRDILLSLGAA 127
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
+++P A Y V+FAG + ++R+ GD + P+ L+ LN++LDPI I+
Sbjct: 128 GALKP-AMEYGSVVFAGTLFTLFPGAAYGILRSEGDARRPMYAMGLSAVLNMVLDPILIY 186
Query: 192 IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSS 251
G+ GAA ATV+S + +++ + ++G+ I + D I+ V +P+S
Sbjct: 187 TAGWGIAGAAWATVISQLLVSLLIIYWFLAGRTFTSIGWSHFRADRGVVWSILSVTIPAS 246
Query: 252 IGQSANSFGFVVLTRIIMGF-GDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
S +L I+ G A Y R+V ++ A+ ++ G+
Sbjct: 247 AEFLVMSMVTALLNWILTSVAGTSAVAVYSAGWRIVMLAIVPVISVATALVSVSGVAYGS 306
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDD-------PEVIAESKIVL 363
+E +V ++ + IAG + V I +F P + +++
Sbjct: 307 RNFENLEVAHGYSIRLGLLIAGATAALTFVLAPWIAWIFSYSQASSHLAPRITGFLRVIC 366
Query: 364 EYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGI 423
+++ P ++ +F AG + S+++S++R ++ L F Y+ A+T
Sbjct: 367 LFYIFLPP-----GIMSGSIFQGAGRGMTSLMLSVIR----QVLLVAVFAYLLAVT---- 413
Query: 424 RIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAW 456
+ + E+ GV++G+ + +++ W
Sbjct: 414 -LGLGEV------GVWWGVVAGDIGGSLVAYLW 439
>dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 452
Score = 132 bits (329), Expect = 8e-30
Identities = 103/412 (25%), Positives = 192/412 (46%), Gaps = 10/412 (2%)
Query: 21 TLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGF 80
TL L WPI + L+ +L DT L + +A++A GV+ I+ ++ + GF G
Sbjct: 10 TLFALTWPIFIEILLHMLMGNADTLMLSQYSDDAVAAVGVSNQILAVIIVM-FGFVATGT 68
Query: 81 SI-VGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
SI V Q++GA + + A + A L F + L+ I P L M + S+ A
Sbjct: 69 SILVAQHLGAKERENAGKVAVVSIGANLIFGIVLGLLLIAFGPPILKAMQLDDSLLQEAT 128
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y ++ V L M A++R+ TK + ++ LN+I + +FIF I L
Sbjct: 129 LYLQIVGGFSVVQSLIMTAGAILRSHSFTKDVMYVTIGMNILNVIGNYLFIFGPFGIPVL 188
Query: 196 GVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYS--KIVRVGLPSSIG 253
GV G AL+TV+S +G + + IL+ + ++ L + ++++G+PS+
Sbjct: 189 GVTGVALSTVVSRTIGLFV-IAILLYKRIRGELPFAYLLKRFPRVELRNLLKIGIPSAGE 247
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
Q + + +V+T I G V T L+ F+ + I ++ VGA++
Sbjct: 248 QLSYNASQLVITYFIAMMGTEALTTKVYTQNLMMFVFLFAVAIGQGTQILIGHQVGAKQI 307
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFF 373
+ A V R++ + ++ +V F P+ +F D+P++++ +L +I P
Sbjct: 308 QAAYVRCFRSLWIAMTVSVSMAVVFFAFSTPLLGIFTDNPDILSLGTTLLLLTIILEP-G 366
Query: 374 NGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRI 425
+VV +AG + ++++ +WG +P++Y G + +G+ I
Sbjct: 367 RACNLVVISSLRAAGDVKFPVYLAIVSMWGIAVPIAYLLGLPLGLGLIGVWI 418
>pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp
>gi|971571|emb|CAA62487.1| (X91006) orf B [Pyrococcus
sp.] >gi|1586540|prf||2204238A dinF-like gene
[Pyrococcus sp.]
Length = 363
Score = 129 bits (321), Expect = 7e-29
Identities = 90/314 (28%), Positives = 155/314 (48%), Gaps = 15/314 (4%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGV-----AWPIIGTLMALG 72
I K L KLAWP + N+ Q L N+ DT +G + AL V +W + +MA+
Sbjct: 4 IRKRLWKLAWPAIAGNISQTLLNLVDTMIVGHVSAVALGCSWVWEGMVSWFMFPIMMAVS 63
Query: 73 MGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTP 132
G T+A +V + +G ++ +A+R A + L I L M
Sbjct: 64 TG-TLA---VVARRVGERNYDEASRVAEQSMYIAFILGIPVMLFGIFFGDDILRIMGAKG 119
Query: 133 SIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF- 191
+ AY Y V+F P+ F+ F + +R GDTKTP+ ++ L +N +LD + +F
Sbjct: 120 EVFEIAYAYLRVLFLFYPIRFVGFAFFSSLRGAGDTKTPMLLNILMNVVNAVLDYLLVFG 179
Query: 192 ---IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGL 248
++G +GAA A+ + + ++G+ + ++ + LK LE L+ W KI+R+G
Sbjct: 180 KLGFPRMGPVGAAWASGIGITIAFLVGLYLFIAHRLVLKPVLE-LRIRWDIVEKILRIGT 238
Query: 249 PSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNV 308
P+ + + SF + I+ FG + +A+ I R+ + + G S+A +V Q++
Sbjct: 239 PTMLERGLFSFYNFLYMSIVTRFGKIALSAHHIGLRVESIAYMPAFGFSIATSALVGQSL 298
Query: 309 GAEKYE-RAKVIAE 321
GA+K E R +V+ E
Sbjct: 299 GAKKPEQRGRVVKE 312
>pir||H69837 conserved hypothetical protein yisQ - Bacillus subtilis
>gi|1934838|emb|CAB07959.1| (Z93940) unknown [Bacillus
subtilis] >gi|2145382|emb|CAA70645.1| (Y09476) YisQ
[Bacillus subtilis] >gi|2633417|emb|CAB12921.1| (Z99109)
alternate gene name: yucE~similar to hypothetical
proteins [Bacillus subtilis]
Length = 455
Score = 126 bits (314), Expect = 5e-28
Identities = 101/431 (23%), Positives = 205/431 (47%), Gaps = 15/431 (3%)
Query: 5 KVKAMRREILEGPIEKT--LLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAW 62
K + L+ P +KT L L WPI + + + DT L + +++A GV+
Sbjct: 2 KQAVFKSTALKKPADKTFSLFSLTWPIFIEVSLYMFMGNADTLMLSQYSDNSVAAVGVSN 61
Query: 63 PIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFS-TLSALISILIL 121
I+ ++ + I+ Q++G+ K+A A F S +SA++ +
Sbjct: 62 QILNLIIVMFSFIATGTTVIISQFLGSRQKKEAMEVAYVSIGANFFISLAISAVVFFAAV 121
Query: 122 PLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFL 181
PL L M ++ ++ P A + V+ + L M F+A++++ G TK + ++ L
Sbjct: 122 PL-LHMMGLSDALMPDAKVFLQVVGGLSFIQALIMTFSAILKSYGYTKDTMFVTIGMNIL 180
Query: 182 NIILDPIFIF-IF---KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDW 237
NI + + IF +F LGV G A++T ++ +G +I + ++++ + LK++L+ +
Sbjct: 181 NIAGNFVVIFGLFGFPVLGVAGVAMSTSIARVIG-LIAMIVIVNKRIQLKMSLKKVFHMH 239
Query: 238 KFY-SKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGI 296
K + K++++G+PS+ Q + + +++T I G V T + FI I
Sbjct: 240 KEHLRKLLKIGIPSAGEQLSYNLSQMIVTYFIAIMGAQALTTKVYTQNITMFILLFGTAI 299
Query: 297 SMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVI 356
S ++ + +G ++++ A +++ IA +++ +F + +F P++I
Sbjct: 300 SQGTQILIGRYIGGKQFDAAYERCMKSLYWALGIAAATSVLMTIFSKDLIGLFTQSPDII 359
Query: 357 AESKIVLEYFLISVP--FFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGY 414
A + +++ +I P FN V++ +AG + M+M+ +WG +PL+Y FG
Sbjct: 360 ATASLLIAMTIILEPGRSFN---VIIINSLRAAGDAKFPVYMAMISMWGIGLPLAYLFGI 416
Query: 415 IPAITFLGIRI 425
GI I
Sbjct: 417 HLGFGLAGIWI 427
>pir||G82392 conserved hypothetical protein VCA0989 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658430|gb|AAF96885.1|
(AE004425) conserved hypothetical protein [Vibrio
cholerae]
Length = 444
Score = 125 bits (312), Expect = 8e-28
Identities = 104/452 (23%), Positives = 202/452 (44%), Gaps = 28/452 (6%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
+ K L ++ WP++ L + + + D+ ++G+LG L+A G PI ++ + +G +
Sbjct: 10 LAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGLGI 69
Query: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPY 137
A +++ + IGAG + A + G + + L AL+ L+ L + ++
Sbjct: 70 ATTAVISRAIGAGKTEYAKQLGGLVIVIGGIGVALIALVLYLLRQPLLGLLGAPETVFAI 129
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLGV 197
Y + A + + ++ RA G+T P + +T LN+ILDPIFIF F LG+
Sbjct: 130 IDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFTFDLGI 189
Query: 198 LGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSAN 257
GAA+AT+++ VG I V ++ + +DL + + + + P+ + Q
Sbjct: 190 DGAAIATIIAFGVGIAI-VAPKVAQRQWTSYQWQDLNIS-QSLTALGHIMGPAMLSQLLP 247
Query: 258 SFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAK 317
+ T+++ FG AA+ + +R F ++M++ M+ + +GA++ +
Sbjct: 248 PLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIGRMLGAKEITHIR 307
Query: 318 VIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPF---FN 374
+ LV VF P+ ++ + EV +L L+ VP
Sbjct: 308 QLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETEV----SQILNLHLVIVPISLGAL 363
Query: 375 GIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELFNFT 434
GI +++ V ++ G + ++ +S LRL+ F +P + + F GI
Sbjct: 364 GICMLMVSVANALGKSYVALTISALRLFAFYLPCLWLGAH-----FYGI----------- 407
Query: 435 SRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRI 466
G+F G + N +A AW +R++
Sbjct: 408 -EGLFIGALVGNIIAG--WAAWLAYQKALRQL 436
>pir||E82296 conserved hypothetical protein VC0650 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655087|gb|AAF93816.1|
(AE004151) conserved hypothetical protein [Vibrio
cholerae]
Length = 445
Score = 116 bits (289), Expect = 4e-25
Identities = 100/430 (23%), Positives = 196/430 (45%), Gaps = 17/430 (3%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGM--G 74
I + ++ P V L+ LY + D ++G +G E L+ VAWP+IGT++ +GM G
Sbjct: 6 IYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLVG 65
Query: 75 FTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMN---VT 131
+ + Q G D K + G L SL+L L+ ++++++ +A DF+
Sbjct: 66 VGTGALASIKQGEGHPDSAKRILATG-LMSLLL----LAPIVAVILWFMADDFLRWQGAE 120
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
+ +Y V+ G + + L+R + + NI LD +FI
Sbjct: 121 GRVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIA 180
Query: 192 IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSS 251
+ + GAA+AT L+ V T++G+ S +A +++T L+ +W KI +G+ S
Sbjct: 181 WLQWELTGAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSF 240
Query: 252 IGQSANSFGFVVLTRIIMGFGD-VTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ S + +++ +G+ V AY + +V GI+ M + + + GA
Sbjct: 241 FMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGA 300
Query: 311 EKYERAKVIAERTMVVNFAIAGFA-VLVIGVFRVPIFKVF-LDDPEVIAESKIVLEYFLI 368
Y+ + + M + + G A VLV+ +F +F D E+IA +++ ++ L
Sbjct: 301 RNYDHIRKLLRLAMGI-AVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLF 359
Query: 369 SVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMA 428
++ + +G VV + S K+M +++ + +P + +T + I +P++
Sbjct: 360 AM-YLDGFLVVSAAYYQSTNRGGKAMFITVGNM-SIMLPFLFILPQFFGLTGVWIALPIS 417
Query: 429 ELFNFTSRGV 438
+ T G+
Sbjct: 418 NIVLSTVVGI 427
>gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Halobacterium sp.
NRC-1]
Length = 513
Score = 116 bits (288), Expect = 5e-25
Identities = 102/391 (26%), Positives = 173/391 (44%), Gaps = 8/391 (2%)
Query: 25 LAWPIVVNNLIQVLYNITDTFWLG-KLGREALSAPGVAWPIIGTLMALGMGFTMAGFSIV 83
LA P +V ++ L D F + G A++A + + L + T S+V
Sbjct: 35 LAVPAMVTGGLRTLLRTADFFMVSIATGSTAVAALEIGFQYYFIPFGLALALTSGTISVV 94
Query: 84 GQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAYRYAI 143
++ GA D AN + L L S + + + +N P I Y
Sbjct: 95 SRFKGADDHAGANFAIKQSLWLALLVSLPITAGTWVYADSMIGLLNSNPEIIELGAAYLR 154
Query: 144 VIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF---IF-KLGVLG 199
V+ V F M + + GDT+TP+ + +T+ NI L+ + IF +F +LGV+G
Sbjct: 155 VVMLTVVFRFWGMTASRALAGAGDTRTPMYVRLITLPTNIALNAVLIFGIWVFPELGVVG 214
Query: 200 AALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSF 259
AA T ++NAV I+ +L+SG+ + ++ + DW S+IVRV LP + + + +F
Sbjct: 215 AAWGTAIANAVAGIVFFAVLLSGRWDVTLSFSGKQWDWGVASEIVRVSLPLAGTRLSRTF 274
Query: 260 GFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVI 319
G ++ F AAY I R++ + G S A T+V Q +GA + A
Sbjct: 275 GRFPFLFVLGLFSHQVVAAYAIGRRVMLLALMPAWGYSTASSTLVGQQLGAGDPDEAAAY 334
Query: 320 AERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVV 379
+T+ V A ++ V PI F PE + + + F +SV F+ +
Sbjct: 335 GWQTLRVALATQLIIGALLFVAAGPIASAF--TPERFSLTVTFIRIFGLSVAGFS-VART 391
Query: 380 VTGVFSSAGHTVKSMVMSMLRLWGFRIPLSY 410
+ G AG T + ++ + R+PL++
Sbjct: 392 LRGALRGAGDTRWPLYGGLIGTYIVRLPLAF 422
>pir||G64614 conserved hypothetical integral membrane protein HP0759 -
Helicobacter pylori (strain 26695)
>gi|2313885|gb|AAD07807.1| (AE000588) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 417
Score = 113 bits (280), Expect = 4e-24
Identities = 101/429 (23%), Positives = 180/429 (41%), Gaps = 34/429 (7%)
Query: 45 FWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFS 104
F++GK+ + A GV + + +I+ + +GA DF + N + ++F
Sbjct: 9 FFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFTQINHAFSSIFI 68
Query: 105 LVLFFSTLSALISILILPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRA 164
+S ++ L++M + R Y V+ +P FL + + + +
Sbjct: 69 GAFMICLGVLFVSYFLIEPFLNWMQLQDPSRQLTQDYLEVLVVALPSIFLKNILVSALAS 128
Query: 165 TGDTKTPVKISALTVFLNIILDPIFIF----IFKLGVLGAALATVLSN-----AVGTIIG 215
DT TP + + V I L+ IF ++G++G+ALA V+ + A+G I
Sbjct: 129 FSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALANVVVSYLELLALGVWIQ 188
Query: 216 VKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVT 275
+K + KIT + F + RVG P+ + + F ++L++ + +GD
Sbjct: 189 IKKI---PLKFKITFH-----FSFLKTMFRVGWPAGFERLLSLFSLILLSKFVASYGDKV 240
Query: 276 YAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAV 335
A I R+ F G +A + QN+GA K + A A + ++ + G
Sbjct: 241 LAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGVLG 300
Query: 336 LVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMV 395
+V+ +F +F D EV+ ++ L +S G F V+ GVF AG + S+
Sbjct: 301 IVLVLFAKEFASLFSQDEEVLEVARSYLIAVGLSQAPLIGYF-VLDGVFRGAGISKVSLY 359
Query: 396 MSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLA 455
++ L LWG RI + I + + +F +F + FL + I
Sbjct: 360 INTLSLWGLRI----------------MPIYLLLIHHFKVEFIFVVIASETFLRSFIYYK 403
Query: 456 WFLKGSWMR 464
F KG W R
Sbjct: 404 VFSKGIWKR 412
>pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeolicus
>gi|2982882|gb|AAC06502.1| (AE000675) hypothetical
protein [Aquifex aeolicus]
Length = 472
Score = 112 bits (278), Expect = 8e-24
Identities = 105/403 (26%), Positives = 178/403 (44%), Gaps = 26/403 (6%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
K ++KL+ PI+V NL+ + N+ + + A++A G + ++ + +L M + +G
Sbjct: 17 KKVVKLSIPIIVVNLLYTVENMISMILVSSISPSAVAATGFSLSLLWFIYSL-MALSYSG 75
Query: 80 FSI-VGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDF-------MNVT 131
+I + Q++GA K + S + L L F LIS+ + DF + +
Sbjct: 76 TNILIAQFVGA----KKDPSPILINGLFLSF-----LISLPLFFYGKDFVLFLMKVLGAS 126
Query: 132 PSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF 191
++R A Y IF +P+ FL F GDTKTP+K++ + +I I
Sbjct: 127 ETVRSLAKEYLTPIFWFIPIGFLTNTFYGAYNGAGDTKTPMKVAIIMNLTHIGTAYTLIN 186
Query: 192 ----IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVG 247
+ KLGV GA +S + I +L+ K + L L+P K K+VR+G
Sbjct: 187 GKFGLPKLGVEGAGWGIAISEILAFFIYTFLLIFFKKPFPLHLR-LEP--KLLFKMVRLG 243
Query: 248 LPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQN 307
P+++ ++ + F V + FGD AA+ I R+ + I G+ +A T+ QN
Sbjct: 244 TPTALERAITTLSFNVFVGFLAKFGDKVLAAHQIGLRIESISFMIGFGVMIASTTLAGQN 303
Query: 308 VGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFL 367
GA Y + + L++ +F + F DPEVI + L+
Sbjct: 304 YGARNYRGMVHAVNTSAHFTALVMSLTGLILILFPHYLVYPFSRDPEVIEWASYYLQIVG 363
Query: 368 ISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSY 410
IS P + +G G T + +++ W FRI SY
Sbjct: 364 ISQPAM-AYASIYSGALKGMGKTHIPLFVNISSFWLFRIIPSY 405
>pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (strain J99)
>gi|4155262|gb|AAD06282.1| (AE001501) putative
[Helicobacter pylori J99]
Length = 417
Score = 110 bits (273), Expect = 3e-23
Identities = 103/431 (23%), Positives = 185/431 (42%), Gaps = 38/431 (8%)
Query: 45 FWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAGALF- 103
F++GK+ + A GV + + +I+ + +GA DF + N + ++F
Sbjct: 9 FFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFAQINHAFSSIFI 68
Query: 104 -SLVLFFSTLSALISILILPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALM 162
+ V+ L A S ++ L++M + R Y V+ +P FL V + +
Sbjct: 69 GAFVICLGVLFA--SYFLIEPFLNWMQLQDPSRQLTQDYLEVLVIALPSIFLKNVLVSAL 126
Query: 163 RATGDTKTPVKISALTVFLNIILDPIFIF----IFKLGVLGAALATVLSN-----AVGTI 213
+ DT TP + + V I L+ IF ++G++G+ALA V+ + A+
Sbjct: 127 ASFSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALANVVVSYWELLALSLW 186
Query: 214 IGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGD 273
I +K + KIT + F + +VG P+ + + F ++L++ + +GD
Sbjct: 187 IQIKKI---PLKFKITFH-----FSFLKTMFKVGWPAGFERLLSLFSLILLSKFVASYGD 238
Query: 274 VTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGF 333
A I R+ F G +A + QN+GA K + A A + ++ + G
Sbjct: 239 KVLAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGV 298
Query: 334 AVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKS 393
+++ +F +F D EV+ ++ L +S G F V+ GVF AG + S
Sbjct: 299 LGVILILFAKEFASLFSQDGEVLEVARSYLIAVGLSQAPLIGYF-VLDGVFRGAGISKVS 357
Query: 394 MVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIG 453
+ ++ L LWG RI + I + +++F +F + L FL + I
Sbjct: 358 LYINTLSLWGLRI----------------MPIYLLLIYHFKVEFIFVVIALETFLRSFIY 401
Query: 454 LAWFLKGSWMR 464
F KG W R
Sbjct: 402 YKVFSKGIWKR 412
>pir||G70172 conserved hypothetical integral membrane protein BB0584 - Lyme
disease spirochete >gi|2688513|gb|AAB91523.1| (AE001160)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 448
Score = 109 bits (269), Expect = 9e-23
Identities = 113/455 (24%), Positives = 195/455 (42%), Gaps = 28/455 (6%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
I K LLK+A P + + ++TD + LG ++ +A + +G F+M
Sbjct: 16 IYKDLLKIAIPTAIEFFLFNFISLTDNAMVAYLGDYPVAGVSLANKFFELFVTIG--FSM 73
Query: 78 AG-FSIVG--QYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSI 134
AG ++I+ QY GDFK + ++ FS LISI+ L ++
Sbjct: 74 AGAYNIIATRQY-NQGDFKSFRNTFFISILTIILFSFPFILISIVNPFFLLRLISNDERA 132
Query: 135 RPYAYRYA-IVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIF 193
Y Y I IF+ V ++ NAL + K V IS +V LN + + IFIF+F
Sbjct: 133 VYYGAAYLNIAIFSFVFAIIKGLIANAL-KVVEIVKFQVYISVFSVLLNFVFNYIFIFVF 191
Query: 194 KLGVLGAALATVLSNAVGTIIGVKILMSGKAG-LKITLEDLKPDWKFYSKIVRVGLPSSI 252
+GV+GAA+AT + + I+ + K L L+DL + K ++++++ +P +
Sbjct: 192 HMGVVGAAIATTVIRTLELIVYLVCTAFNKNSILHFKLDDLNINIKPFAQLIKFFIPILL 251
Query: 253 GQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEK 312
+ A FG++VLT I +G YAAY I+ + I +I +++ M+ + K
Sbjct: 252 NEFAWFFGYLVLTSIFIGIDTHKYAAYSISFSIYFIIFNIIHSFCISLNIMMGYEMHNSK 311
Query: 313 YERAKVIAERTMV-VNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVP 371
E KV + + + A VL I F P L +I I+L Y +S
Sbjct: 312 KEIMKVAIYLSKIGLKLAFLTSFVLFIFSFFAPYIFYTLKYSHLIG---IILRYSSVSAF 368
Query: 372 FFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELF 431
F F + G F + +M + + IP+++ +A
Sbjct: 369 FMALAFQYLFGFFRAGASPSFGAIMEGSVTFVYTIPIAFV---------------LANYT 413
Query: 432 NFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRI 466
N + F L + + ++ L +F W++ +
Sbjct: 414 NLPFEIIVFIPSLEDAIKLVVSLPYFYSERWIKSV 448
>sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir||B64173 hypothetical
protein HI1612 - Haemophilus influenzae (strain Rd KW20)
>gi|1574453|gb|AAC23256.1| (U32834) conserved
hypothetical transmembrane protein [Haemophilus
influenzae Rd]
Length = 464
Score = 106 bits (263), Expect = 4e-22
Identities = 95/401 (23%), Positives = 172/401 (42%), Gaps = 9/401 (2%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
K L+K++ PI++ + Q + DT G++ ++A + I LM G G +A
Sbjct: 14 KKLIKISLPILLAQIAQNSMGLADTIMAGRVSSTDMAAISIGASIWMPLMFFGQGLLLAL 73
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
+ G+G + LVL S L+ I + L +M + + A
Sbjct: 74 PPTISYLNGSGQHHRIAHQVRQGIWLVLGVSIPLGLL-IYFCEIPLQYMQMESKMSDLAR 132
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y + G+P + + F L TK + I+ L + +NI L+ IFI+ +
Sbjct: 133 DYLHAMLWGLPAYLMLINFRCLNDGIEKTKPAMVITFLGLLINIPLNYIFIYGKFGMPAF 192
Query: 196 GVLGAALATVLSNAVGTIIGV--KILMSGKAGLKITLEDLK-PDWKFYSKIVRVGLPSSI 252
G +G +AT + N ++ + + + LK+ + ++ P+ K K++R+GLP +I
Sbjct: 193 GAVGCGIATAIVNWAMCLMMIFYSYTNTQERSLKVFSQLIEMPNPKTLKKLLRLGLPIAI 252
Query: 253 GQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEK 312
+ + + ++ G A++ IT +FI I MA +V Q +GA
Sbjct: 253 AICCEVALYALTSLMLSPLGATIVASHQITLNTSSFIFMFPMSIGMATTILVGQALGAGS 312
Query: 313 YERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPF 372
+ AK I +++ + L+ FR I +F+ D VIA + +L F F
Sbjct: 313 PQNAKKIGYAALLLGLTVTIVTALITIFFRYEIASIFVTDEIVIAMAANLL-LFAALYQF 371
Query: 373 FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFG 413
+ I +VV G+ T + +++ W +PL Y G
Sbjct: 372 SDTIQMVVGGILRGYKDTKVILYITLFSYWVIGVPLGYTLG 412
>pir||H64667 conserved hypothetical integral membrane protein HP1184 -
Helicobacter pylori (strain 26695)
>gi|2314344|gb|AAD08230.1| (AE000624) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 459
Score = 104 bits (256), Expect = 3e-21
Identities = 108/451 (23%), Positives = 197/451 (42%), Gaps = 56/451 (12%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMA 70
++ + PI K P+ + + Y++ D ++GK LG+EA++A +AWPI L+A
Sbjct: 7 DLHKDPIRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIA 66
Query: 71 LGMGFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSA-LISILILPLA---LD 126
+ F SIVG ++G + A +FS V +F +SA ++S+ +LP +
Sbjct: 67 YELLFGFGAASIVGYFLG----QNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIAR 122
Query: 127 FMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNAL--MRATGDTKTPVKISALTV--FLN 182
F ++ + RY +I G +FMV + L + D + + + A+ + N
Sbjct: 123 FFGSNDALLSMSKRYIEIILMGA----VFMVLHPLADVFVVNDKRPILAMVAMLIGSLAN 178
Query: 183 IILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSK 242
I + +FIF+ K+GV G+A+ATV+ +A+G ++ ++ K L +F
Sbjct: 179 IFFNYLFIFVLKVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIK-------RFSLS 231
Query: 243 IVRVGLPSSIGQSANSFGFVVL-------------TRIIMGFGDVTYAAYVITTRLVNFI 289
V S + QS F V+ R + +G V Y A + T L
Sbjct: 232 SVISSAKSGVPQSTAEFSASVMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLF--- 288
Query: 290 TSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVP---IF 346
+IS+GI + + + GA ER K + + F I ++ G + +
Sbjct: 289 -AISQGIQ----PIASFSYGARNLERVKEVFVFGLKAAFCI---GIVFYGAYYFLDEFLI 340
Query: 347 KVFL----DDPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLW 402
K++L DP + E+K + + + F G+ ++ F S T S ++++
Sbjct: 341 KLYLQPSEQDPLFMQETKRAMNIYYVGY-IFLGMTLLCAVFFQSIQRTKSSFIITLSHTL 399
Query: 403 GFRIPLSYAFGYIPAITFLGIRIPMAELFNF 433
GF + L + I + + P+A+ F
Sbjct: 400 GFIVILLPILSHFYGINGVWVTYPIAQFLAF 430
>dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Accession Number
P45272] [Escherichia coli]
Length = 546
Score = 101 bits (249), Expect = 2e-20
Identities = 91/421 (21%), Positives = 184/421 (43%), Gaps = 18/421 (4%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ + LA PI + N +L + TF + LG++A++ G+A +MA +
Sbjct: 91 REITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGT 150
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFM--NVTPSIRPY 137
+V +G D ++A + ++ F+ L A + +DF+ + T ++
Sbjct: 151 TVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKAL 210
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-IFK-- 194
A Y + P + + ++ + +R G+TK P+ I+ LNII+ I I+ +F
Sbjct: 211 ALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWP 270
Query: 195 -LGVLGAALATVLSNAVGTIIGVKILMSG-KAGLKITLED-LKP-DWKFYSKIVRVGLPS 250
LG +GA L +S +G + + +L G L+I+L+ KP ++ +++ +G+P+
Sbjct: 271 GLGFVGAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPA 330
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
S+ + G ++ + G G A I + I + A + + +G
Sbjct: 331 SVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGV 390
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKV----FLDDPEVIAESKIVLEYF 366
+ +A++ F ++ + I P V + DP+V I++
Sbjct: 391 GQIAQAEIQLRHV----FWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLN 446
Query: 367 LISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIP 426
+ +P ++ +V+ G F A +M +SML +WG R+ + Y G + +G+ +
Sbjct: 447 ALFMPIWSASWVLPAG-FKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMG 505
Query: 427 M 427
M
Sbjct: 506 M 506
>sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL INTERGENIC REGION
>gi|7466643|pir||B64963 membrane protein yeeO -
Escherichia coli >gi|2367126|gb|AAC75048.1| (AE000290)
orf, hypothetical protein [Escherichia coli K12]
Length = 547
Score = 101 bits (249), Expect = 2e-20
Identities = 91/421 (21%), Positives = 184/421 (43%), Gaps = 18/421 (4%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ + LA PI + N +L + TF + LG++A++ G+A +MA +
Sbjct: 92 REITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGT 151
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFM--NVTPSIRPY 137
+V +G D ++A + ++ F+ L A + +DF+ + T ++
Sbjct: 152 TVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKAL 211
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-IFK-- 194
A Y + P + + ++ + +R G+TK P+ I+ LNII+ I I+ +F
Sbjct: 212 ALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWP 271
Query: 195 -LGVLGAALATVLSNAVGTIIGVKILMSG-KAGLKITLED-LKP-DWKFYSKIVRVGLPS 250
LG +GA L +S +G + + +L G L+I+L+ KP ++ +++ +G+P+
Sbjct: 272 GLGFVGAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPA 331
Query: 251 SIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
S+ + G ++ + G G A I + I + A + + +G
Sbjct: 332 SVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGV 391
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKV----FLDDPEVIAESKIVLEYF 366
+ +A++ F ++ + I P V + DP+V I++
Sbjct: 392 GQIAQAEIQLRHV----FWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLN 447
Query: 367 LISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIP 426
+ +P ++ +V+ G F A +M +SML +WG R+ + Y G + +G+ +
Sbjct: 448 ALFMPIWSASWVLPAG-FKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMG 506
Query: 427 M 427
M
Sbjct: 507 M 507
>gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pump [uncultured proteobacterium
EBAC31A08]
Length = 448
Score = 101 bits (249), Expect = 2e-20
Identities = 92/369 (24%), Positives = 167/369 (44%), Gaps = 35/369 (9%)
Query: 12 EILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMAL 71
+ L+ PI L+K++ P V LI + + + +++ +LG L+A +A+P I ++
Sbjct: 7 QFLKDPIFPLLIKMSAPNTVAFLINAVVVLAEFWFISQLGITPLAAVTLAFPAI--MLTQ 64
Query: 72 GMGFTMAGFSI---VGQYIGAGDFKKANRSA---------GALFSLVLFFSTLSALISIL 119
M F G ++ + + +GA D +A + GAL L++FF L+ IL
Sbjct: 65 QMAFGALGGAVTSSIARSLGAADKPRAEKLLWHSLYISCFGALAFLIIFFIFGEPLLRIL 124
Query: 120 ILPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTV 179
T ++ + Y V G V +L A +R GD + P ++ +
Sbjct: 125 ---------GGTGALLEESLAYCFVYLLGAIVVWLSGSLTAALRGMGDMQFPAVLTVICA 175
Query: 180 FLNIILDPIFIF----IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKP 235
+ + FI + KLG++G+A + ++++ ++ + + S + +++ L+ L
Sbjct: 176 GIQVFFSAGFILGSFGLPKLGLVGSAWSMIVTSGFMALVTLIKISSPSSPVRLKLKRLTI 235
Query: 236 DWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRG 295
+ + + I V LP+S+ ++LT +I FG A Y I +R+ + I G
Sbjct: 236 ERELFEDIFSVALPASLSPIMTVATVLLLTGLIGQFGTSAIAGYGIGSRVEFLLIPIVFG 295
Query: 296 ISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPI----FKVFLD 351
I AM MV N+GA+ ER AE+ +V AG VIG+ +F
Sbjct: 296 IGTAMTAMVGTNIGAKNIER----AEKIGMVGATTAGLLSAVIGLALALTPNLWISIFTS 351
Query: 352 DPEVIAESK 360
DPE + +K
Sbjct: 352 DPETLLVTK 360
>pir||A71849 hypothetical protein jhp1110 - Helicobacter pylori (strain J99)
>gi|4155699|gb|AAD06682.1| (AE001538) putative
[Helicobacter pylori J99]
Length = 459
Score = 101 bits (248), Expect = 3e-20
Identities = 102/432 (23%), Positives = 193/432 (44%), Gaps = 50/432 (11%)
Query: 28 PIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGMGFTMAGFSIVGQY 86
P+V + + Y++ D ++GK LG+EA++A +AWPI L+A + F SIVG +
Sbjct: 23 PLVFSMISLSTYSMVDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYF 82
Query: 87 IGAGDFKKANRSAGALFSLVLFFSTLSA-LISILILPLALD---FMNVTPSIRPYAYRYA 142
+G + A +FS V +F LSA ++S+ +LP + + F ++ + RY
Sbjct: 83 LG----QNKTHRARLVFSSVFYFVALSAFILSMALLPFSENIARFFGSNDALLSMSKRYI 138
Query: 143 IVIFAGVPVSFLFMVFNAL--MRATGDTKTPVKISALTV--FLNIILDPIFIFIFKLGVL 198
+I G +FMV + L + D + + + A+ + NI + +FIF+ ++GV
Sbjct: 139 EIILMG----SVFMVLHPLADVFVVNDKRPVLAMVAMLIGSLANIFFNYLFIFVLEVGVQ 194
Query: 199 GAALATVLSNAVGTIIGVKILMSGKAGL----KITLEDLKPDWKFYSKIVRVGLPSSIGQ 254
G+A+ATV+ +A+G ++ ++ K L + +L + + G+P S +
Sbjct: 195 GSAIATVIGHAIGVLVLMQHFWRKKGQLYFIKRFSLSSV-------ISSAKSGVPQSTAE 247
Query: 255 SANSFGFVVLTRIIMG---------FGDVTYAAYVITTRLVNFITSISRGISMAMGTMVA 305
+ S ++ IM +G V Y A + T L +IS+GI + +
Sbjct: 248 FSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLF----AISQGIQ----PIAS 299
Query: 306 QNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPE----VIAESKI 361
+ GA ER + + + F I F + K++L E + E+K
Sbjct: 300 FSYGARNLERVRAVFVFGLKAAFCIGIFFYGAYYFLDEFLIKLYLQPSEQDALFMQETKR 359
Query: 362 VLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFL 421
+ + + F G+ ++ F S T S ++++ GF + L + + +
Sbjct: 360 AMNIYYVGYVFL-GMTLLCAVFFQSIQRTKSSFIITISHTLGFIVILLPILSHFYGVNGI 418
Query: 422 GIRIPMAELFNF 433
+ P+A+ F
Sbjct: 419 WVTYPIAQFLAF 430
>pir||E82175 conserved hypothetical protein VC1631 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656143|gb|AAF94782.1|
(AE004241) conserved hypothetical protein [Vibrio
cholerae]
Length = 458
Score = 100 bits (247), Expect = 3e-20
Identities = 98/409 (23%), Positives = 172/409 (41%), Gaps = 19/409 (4%)
Query: 14 LEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGM 73
+ G + L+ +A PI + N++ + D LG+LG ++A GVA + +
Sbjct: 11 MRGDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLV 70
Query: 74 GFTMAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISIL----ILPLALDFMN 129
G T G + QY GAGD K S + + FF+ + L+ + I+ L D
Sbjct: 71 GVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQ 130
Query: 130 VTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIF 189
V Y + +FA VS + + A+ + T S + + N++L+ I
Sbjct: 131 VNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTF----FSGIGIVSNVVLNWIL 186
Query: 190 IF----IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKP--DWKFYSKI 243
IF +G+ GAA+ATVLS A+ L K + +D+K DW S+
Sbjct: 187 IFGKFGFPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRF 246
Query: 244 VRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTM 303
+R+ LP++ + G I+ G AA + T + + S+ G+S A +
Sbjct: 247 LRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVL 306
Query: 304 VAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVF--RVPIFKVFLD-DPEVIAESK 360
V +GA+ YE V + V ++ V+ IG++ ++P+ F PE S+
Sbjct: 307 VGNQLGAKNYE--AVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSE 364
Query: 361 IVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLS 409
+ + + + + GV + G + ++ W IPL+
Sbjct: 365 KFMLILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLA 413
>pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (strain K1)
>gi|5105463|dbj|BAA80776.1| (AP000062) 423aa long
hypothetical protein [Aeropyrum pernix]
Length = 423
Score = 99.5 bits (244), Expect = 7e-20
Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 28/382 (7%)
Query: 41 ITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGFSIVGQYIGAGDFKKANRSAG 100
I DT+++G LG E+++A G A +I M M I+GQ IG+G+ R+AG
Sbjct: 12 IVDTYFVGGLGSESIAAVGAAGYLIWLYMVFSTLVYMGVLVILGQAIGSGNRGLVERAAG 71
Query: 101 ALFSLVLFFSTLSALISILILPLALD-----FMNVTPSIRPYAYRYAIVIFAGVPVSFLF 155
TLS L+SI++ A + + P + A+ Y V V + ++
Sbjct: 72 EGL-------TLSILLSIIVCAAAFAASKQLLVVLAPEVDQLAWEYLSVSLLTVALHYVT 124
Query: 156 MVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKLGVLGAALATVLSNAVG 211
++++A+ RA G T + S + N LDPI I+ LGV GAA A+V
Sbjct: 125 ILYDAVFRALGKTMPILYSSGVFTLANTALDPILIYGRLGAPALGVEGAAWASV----AA 180
Query: 212 TIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGF 271
+++G+ +L+ L + L L+P I+ +G PS + + G VV +
Sbjct: 181 SLLGLLVLVYLSRYLDVGLRPLRPT-SVSRSILALGFPSMVERVVFVVGNVVYLGSVSRC 239
Query: 272 GDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAI- 330
G AA+ I R+ + I+ A G MV VGA + +K + ++ I
Sbjct: 240 GADALAAHTIGVRIESLAFLPLFSIATASGVMVGWEVGAGRIAESKSTGWELIKLSSLIG 299
Query: 331 --AGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAG 388
G A+ + G PI F DP V + + L ++ P G+ +V + +AG
Sbjct: 300 LVVGAALALGGWLVTPI---FTGDPRVAWLAALYLVIAGLTEPLL-GVVMVAGQIIRNAG 355
Query: 389 HTVKSMVMSMLRLWGFRIPLSY 410
T ++++ L+ R+ +Y
Sbjct: 356 DTRTPTLVNLGSLYILRVVPAY 377
>pir||H81402 probable integral membrane protein Cj0560 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968028|emb|CAB75196.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 442
Score = 99.1 bits (243), Expect = 1e-19
Identities = 103/446 (23%), Positives = 186/446 (41%), Gaps = 29/446 (6%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGMGFTMA 78
+ +K A P V++ Y I D ++GK LG +AL+A + P I AL +
Sbjct: 12 RLFVKYAVPNVISMAFISFYYIVDGIFVGKYLGSDALAALALIIPFIMMSFALADMIAIG 71
Query: 79 GFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYA 138
+ ++G G A + + ++ S ++ + P+ +D +NV+ I+
Sbjct: 72 SAVQISMHLGLGKKNLARKIFSSSMLIIFIISCFIGILEYFLGPVLIDCLNVSDEIKTMT 131
Query: 139 YRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLGVL 198
V P + L + +R G T + ++ + NI+LD IFI G+
Sbjct: 132 KECMFVFALFAPFTMLSFALDNYLRICGKTAYSMVMNVIIALSNIVLDYIFIVELGWGLF 191
Query: 199 GAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANS 258
AALAT L +G I G+ + LKI+ L + K + I+ G G + S
Sbjct: 192 SAALATCLGLVLGGIFGIFPFLFQNLELKIS--SLYMNLKIFKNILYNGSSEFFGNISGS 249
Query: 259 FGFVVLTRIIMGFGDV-TYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAK 317
+ +++ D AA+ I + +FI + I AM ++ N + + R K
Sbjct: 250 LYSIFANFVLLKISDTQAVAAFSIVLYIDSFIIMLIIAIGDAMQPALSYNYAKKDFSRIK 309
Query: 318 VIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIF 377
I + ++ F++++I +F + +F + ++ L + +F F
Sbjct: 310 AIIKVVFFAGGFLSLFSIVLILIFGENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWF 369
Query: 378 VVVTGVFSSAGHTVK-SMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAELFNFTSR 436
V++G F +A + S+V+S+ + IPL F + F+G+
Sbjct: 370 NVLSGSFLTAFNKASFSLVLSLAQ--NLFIPL---FFLLFLSCFMGLN------------ 412
Query: 437 GVFFGMGLSNFLA--AIIGLAW-FLK 459
G+ LS F A ++ LAW FLK
Sbjct: 413 ----GVWLSPFFAEFCVLILAWIFLK 434
>dbj|BAB07764.1| (AP001520) unknown conserved protein in others [Bacillus
halodurans]
Length = 447
Score = 98.7 bits (242), Expect = 1e-19
Identities = 102/425 (24%), Positives = 190/425 (44%), Gaps = 23/425 (5%)
Query: 21 TLLKLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGMGFTMAG 79
TLL A P + L +Y + D ++ + +G ALSA + +PI G ++A+ +
Sbjct: 15 TLLAYAAPTMALMLFMSIYTMVDGMFIARYVGATALSAVNIFFPIYGLIIAIALMLGTGA 74
Query: 80 FSIVGQYIGAGDFKKANRS------AGALFSLVLFFSTLSALISILILPLALDFMNVTPS 133
+I+ + IG + ++A + GA+ LV+ L + IL++ A T
Sbjct: 75 NAIIAKKIGENNEEEAKENFTFIVICGAVLGLVITVFGLLLMEPILLMLGA----GATEE 130
Query: 134 IRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIF 193
+ + Y YA +I P L M+F G + I+ + NI+LD +FI +
Sbjct: 131 LFDFTYTYAKIILCTSPFMILQMLFQNFFVTAGKPNLGLTITVVGGVANIVLDYVFIVLL 190
Query: 194 KLGVLGAALATVLSNAVGTIIG-VKILMSGKAGLKITLEDLKPDWKFYSKIVRVG---LP 249
++G+ GA +AT + + G V + + ++GL K D K G +
Sbjct: 191 QMGIAGAGIATAIGIFIPAAYGFVYFIYNKESGLHFVKP--KVDGKVLLNSCINGSSEMV 248
Query: 250 SSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVG 309
S++ S +F F +L +I G AA I ++ ++SIS G S + +++ N G
Sbjct: 249 SNLASSIVTFAFNLL--MIKHLGVDGVAAITIMLYVMFILSSISMGYSAGVAPIISYNYG 306
Query: 310 AEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYF-LI 368
++ + K + ++++ I + + + F F+ PE A I +E +
Sbjct: 307 SKNSSQLKRVFNYSLLI-IVIGSVTMYGVSMMFGAYFIQFM-APEGSAVYHIAIEGLNIF 364
Query: 369 SVPF-FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPM 427
S+ F F G + + VF++ + S +S LR F + + I +T + + IP+
Sbjct: 365 SISFLFMGFNIFSSMVFTAFSNGKISAAISFLRTLVFVLASLWILPAILGVTGIWLAIPL 424
Query: 428 AELFN 432
AE+ +
Sbjct: 425 AEILS 429
>gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Halobacterium sp.
NRC-1]
Length = 489
Score = 97.5 bits (239), Expect = 3e-19
Identities = 113/463 (24%), Positives = 178/463 (38%), Gaps = 57/463 (12%)
Query: 24 KLAWPIVVNNLIQVLYNITDTFWLGK-LGREALSAPGVAWPIIGTLMALGMGFTMAGFSI 82
+LAWP ++ + ++ + D +G LG A++ G A P G ++G G ++
Sbjct: 47 ELAWPRILTGIGRMSKSAADVAMVGAALGSAAITGVGYAGPFWGAAFSIGGGLAAGTIAL 106
Query: 83 VGQYIGAGDFKKANRS---------AGALFSLVLFFSTLSALISILILPLALDFMNVTPS 133
V Q A + A ++ A L VLF+S +ALI +L +
Sbjct: 107 VSQRFSADEIADAGQALRSSAALTVAATLPIAVLFYSHPAALIGLL---------TDRQA 157
Query: 134 IRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIF 193
+ Y V+ GVP + L ++ + + D T + + NI L+ +FIF
Sbjct: 158 EIAFGADYLRVVAFGVPFAGLNLIGSRALIGADDAYTAMVLRGGGALANIGLNGVFIFGL 217
Query: 194 KLGVLGAALATVLSNAVGTIIGVKILMSGK----AGLKITLEDLKPDWKFYS--KIVRVG 247
GV+GA L TVLSN V T V L G+ +T+ W IV +G
Sbjct: 218 GWGVVGAGLGTVLSNVVVTTAFVVGLSRGRLPAVGAFPMTVSVRGAYWVRDDCWDIVTIG 277
Query: 248 LPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQN 307
LP S + L + FG AAY+I R+ + + G +A ++V Q
Sbjct: 278 LPVVGRNSVWTLARFPLLAFMSLFGQPVAAAYIIVRRVFGIMNTPGWGFGLAASSLVGQE 337
Query: 308 VG------AEKYERAKVIAERTMVVNFA--IAGFAVLVIGVFRVPIFKVFLDDPEVIAES 359
+G A Y R + M V FA + FA ++GV F DP V
Sbjct: 338 LGQGRESTAAAYGREITLYSVVMYVMFAGVVCAFAGQIVGV-----FVDSASDPSV--PI 390
Query: 360 KIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAIT 419
+ + Y + GI V G + G T W F G +P +
Sbjct: 391 AVTMVYVAAAAVIPQGIGATVAGALDATGDT----------RWPFYSRAVGMLGALP-LV 439
Query: 420 FLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSW 462
+LG P+ G++ + + A++ F G W
Sbjct: 440 YLGATTPLG------LYGIYLSLFSETCVPAVVNYLRFRSGKW 476
>pir||F69906 conserved hypothetical protein yojI - Bacillus subtilis
>gi|2634337|emb|CAB13836.1| (Z99114) similar to
hypothetical proteins [Bacillus subtilis]
>gi|3169325|gb|AAC17857.1| (AF026147) YojI [Bacillus
subtilis]
Length = 452
Score = 95.6 bits (234), Expect = 1e-18
Identities = 94/435 (21%), Positives = 183/435 (41%), Gaps = 23/435 (5%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVA---WPIIGTLMALGMGFT 76
K LL + PI + L DT GK+ L+ + W + T +A G
Sbjct: 12 KQLLHILIPIFITQAGLSLITFLDTVMSGKVSPADLAGVAIGSSLWTPVYTGLA---GIL 68
Query: 77 MAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRP 136
MA IV Q +GA +K + + S +I + L L +N+ +
Sbjct: 69 MAVTPIVAQLLGAEKKQKIPFTVLQAVYVAALLSIAVLVIGYAAVDLILGRLNLDIHVHQ 128
Query: 137 YAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----I 192
A + + G+ F++ V + + + G T+ + I+ ++ +N +L+ +FIF +
Sbjct: 129 IAKHFLGFLSLGIFPLFVYTVLRSFIDSLGKTRVTMMITLSSLPINFVLNYVFIFGKFGM 188
Query: 193 FKLGVLGAALATVLSNAVGTIIGVKILMSG----KAGLKITLEDLKPDWKFYSKIVRVGL 248
LG +GA LA+ L+ II I+ + G+ +T+ K WK ++++GL
Sbjct: 189 PALGGVGAGLASALTYWCICIISFFIIHKNAPFSEYGIFLTM--YKFSWKACKNLLKIGL 246
Query: 249 PSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNV 308
P + F +T ++ F VT A++ + + + +SMA+ +V
Sbjct: 247 PIGFAVFFETSIFAAVTLLMSHFHTVTIASHQAAMNFASLLYMLPLSVSMALTIVVGFEA 306
Query: 309 GAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLI 368
GA +++ A+ + +++ + F I +FR I ++ DP+V+ + ++FLI
Sbjct: 307 GAARFKDARSYSLIGIMMAIGFSLFTAACILLFREQIAGMYTSDPDVLR----LTQHFLI 362
Query: 369 SVPFF---NGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRI 425
FF + + + G ++ + + W +P+ Y G ++ G I
Sbjct: 363 YALFFQLSDAVAAPIQGALRGYKDVNYTLAAAFVSYWVIGLPVGYMVGTFTSLGAFGYWI 422
Query: 426 PMAELFNFTSRGVFF 440
+ + G+FF
Sbjct: 423 GLIAGLAAGAVGLFF 437
>dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus]
Length = 456
Score = 93.2 bits (228), Expect = 6e-18
Identities = 83/401 (20%), Positives = 164/401 (40%), Gaps = 12/401 (2%)
Query: 21 TLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGF 80
+L+KLA P+++ ++ Q DT G + + ++A VA I + G+G MA
Sbjct: 10 SLIKLATPVLIASVAQTGMGFVDTVMAGGVTQTDMAAVSVASSIWLPSILFGIGLLMALV 69
Query: 81 SIVGQYIGAGDFKKA--NRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYA 138
+V Q G+ +K G + +L++ + L+ + L M+V +
Sbjct: 70 PVVAQLNGSARREKIPFEIQQGVVLALLISIPIIGVLLQTQFI---LQLMDVEAVMADKT 126
Query: 139 YRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFK 194
Y + VP LF + TK + I + + LNI L+ IF++ +
Sbjct: 127 VGYIHAVIFAVPAFLLFQTLRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 186
Query: 195 LGVLGAALATVLSNAV--GTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSI 252
LG +G +AT + V ++ + S + + E KP WK ++ ++G P +
Sbjct: 187 LGGVGCGVATTIVYWVMFALLLAYVMTSSRLKSINVFGEYHKPQWKAQVRLFKLGFPVAA 246
Query: 253 GQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEK 312
F V+ ++ G + AA+ + + + + + A+ V +G E
Sbjct: 247 ALFFEVTLFAVVALLVSPLGPIIVAAHQVAINFSSLVFMLPMSVGAAVSIRVGHRLGEEN 306
Query: 313 YERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPF 372
+ A+V + ++V A+A ++ + R I +++ ++PEVI + +L F
Sbjct: 307 VDGARVASRVGIMVGLALATITAIITVLSRELIAELYTNNPEVITLAMQLL-LFAAVYQC 365
Query: 373 FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFG 413
+ + V+ G + + W +P Y G
Sbjct: 366 TDAVQVIAAGALRGYKDMRAIFNRTFIAYWILGLPTGYILG 406
>pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelicolor
>gi|4808406|emb|CAB42738.1| (AL049826) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 448
Score = 91.3 bits (223), Expect = 2e-17
Identities = 73/370 (19%), Positives = 159/370 (42%), Gaps = 4/370 (1%)
Query: 19 EKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMA 78
++ ++ LA P + + L+ + D+ +G LG L+ G+A ++ T +++ + A
Sbjct: 19 DREIVALAVPAFGALVAEPLFVMADSAIVGHLGTAQLAGLGIASALLTTAVSVFVFLAYA 78
Query: 79 GFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYA 138
+ V + +GAG+ + A R L L + + P ++ + + PYA
Sbjct: 79 TTAAVSRRVGAGNLQAAIRQGMDGIWLALLLGAAVVAVFLPAAPSLVELFGASDTAAPYA 138
Query: 139 YRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLGVL 198
Y + G+P + + ++R +T+TP+ ++ N +L+ + ++ LG+
Sbjct: 139 TTYLRISSLGIPAMLVVLASTGVLRGLQNTRTPLYVAVAGFIANAVLNVLLVYGAGLGIA 198
Query: 199 GAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANS 258
G+A TV++ + + +++ G + L+PD + G+P + +
Sbjct: 199 GSAWGTVIAQCGMAAVYLWVVV---RGARQHGASLRPDLVGIRASAQAGMPLLVRTLSLR 255
Query: 259 FGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKV 318
++ T + GD AA+ I L + + I++A ++ + +GA+ + A+
Sbjct: 256 AILMIATAVAARLGDADIAAHQIVLSLWSLLAFALDAIAIAGQAIIGRYLGADDAQGARE 315
Query: 319 IAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFV 378
R + A+ L++ + R +F D V + L ++ P G+
Sbjct: 316 ACRRMVEWGVAVGVVLGLLVVLSRPVFLPLFTGDSMVTDAALPALVIVAVAQPVC-GVVF 374
Query: 379 VVTGVFSSAG 388
V+ GV AG
Sbjct: 375 VLDGVLMGAG 384
>gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane protein [Arabidopsis
thaliana] >gi|11128377|gb|AAG31183.1|AC074395_4
(AC074395) MATE efflux family protein, putative
[Arabidopsis thaliana]
Length = 526
Score = 90.9 bits (222), Expect = 3e-17
Identities = 79/309 (25%), Positives = 138/309 (44%), Gaps = 13/309 (4%)
Query: 93 KKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPS---IRPYAYRYAIVIFAGV 149
K+ R+A L L + A+ I L L M V P+ + P A++Y + G
Sbjct: 165 KRTIRTASTAMILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSP-AHKYLSIRALGA 223
Query: 150 PVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLGVLGAALATVLSNA 209
P L + + R DTKTP+ + + +NI+LDPIFIF+ +LG++GAA+A V+S
Sbjct: 224 PALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVLDPIFIFVLRLGIIGAAIAHVISQY 283
Query: 210 VGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIM 269
T+I L + DL+ + + ++ GL A +F + +
Sbjct: 284 FMTLILFVFLAKKVNLIPPNFGDLQ-----FGRFLKNGLLLLARTIAVTFCQTLAAAMAA 338
Query: 270 GFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFA 329
G AA+ I ++ + ++ G+++A ++A + + Y + +A R + + F
Sbjct: 339 RLGTTPMAAFQICLQVWLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVLQMGFV 398
Query: 330 IAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVVVTGV---FSS 386
+ + +G+ VF DP VI I + + + P N + V+ GV S
Sbjct: 399 LGLGLSVFVGLGLYFGAGVFSKDPAVIHLMAIGIPFIAATQP-INSLAFVLDGVNFGASD 457
Query: 387 AGHTVKSMV 395
+T SMV
Sbjct: 458 FAYTAYSMV 466
>pir||C81156 conserved hypothetical protein NMB0812 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226046|gb|AAF41225.1| (AE002434) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 459
Score = 90.9 bits (222), Expect = 3e-17
Identities = 85/405 (20%), Positives = 174/405 (41%), Gaps = 15/405 (3%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ L LA P+++ + QV DT G G+E L+A + T+ MG A
Sbjct: 18 RLLTTLALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAAL 77
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
++ Q GAG + + LF ++ + +++ ++ +
Sbjct: 78 NPMIAQLYGAGKTDEVGETGRQGIWFGLFLGVFGMVLMWAAITPFRNWLTLSDYVEGTMA 137
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-IFKLGVL 198
+Y + +P + + +A + + + +S LN+ L+ IF++ F + L
Sbjct: 138 QYMLFTSLAMPAAMVHRALHAYTSSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPAL 197
Query: 199 GAALATVLSNAVG--TIIGVKILMSGKAGLK---ITLEDLKPDWKFYSKIVRVGLPSSIG 253
G A + + AV + + + I ++ + + +T + KPDW + +I ++G P +
Sbjct: 198 GGAGCGLATMAVFWFSALALWIYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLS 257
Query: 254 Q--SANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAE 311
A++F F+V +I FG+ AA + L + I + + A + ++G
Sbjct: 258 YFLEASAFSFIVF--LIAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRR 315
Query: 312 KYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVP 371
++ RA+ I+ ++V+ + +A VL + +FR P+ ++ +DP V++ + VL L +
Sbjct: 316 EFSRARYISGVSLVLGWMLAVITVLSLVLFRSPLVSMYNNDPAVLSIAATVL---LFAGL 372
Query: 372 FFNGIFVVVTGVFSSAGHTVKS--MVMSMLRLWGFRIPLSYAFGY 414
F F ++ G+ V M + WG + Y Y
Sbjct: 373 FQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAY 417
>pir||D81950 probable transmembrane efflux protein NMA1022 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379724|emb|CAB84291.1| (AL162754) putative
transmembrane efflux protein [Neisseria meningitidis
Z2491]
Length = 459
Score = 89.7 bits (219), Expect = 6e-17
Identities = 85/405 (20%), Positives = 173/405 (41%), Gaps = 15/405 (3%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ L LA P+++ + QV DT G G+E L+A + T+ MG A
Sbjct: 18 RLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAAL 77
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
++ Q GAG + + LF ++ + +++ ++ +
Sbjct: 78 NPMIAQLYGAGKTDEVGETGRQGIWFGLFLGVFGMVLMWAAITPFRNWLTLSDYVEGTMA 137
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-IFKLGVL 198
+Y + +P + + +A + + + +S LN+ L+ IF++ F + L
Sbjct: 138 QYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPAL 197
Query: 199 GAALATVLSNAVG--TIIGVKILMSGKAGLK---ITLEDLKPDWKFYSKIVRVGLPSSIG 253
G A + + AV + + + I ++ + + +T + KPDW + +I ++G P +
Sbjct: 198 GGAGCGLATMAVFWFSALALWIYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLS 257
Query: 254 Q--SANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAE 311
A++F F+V +I FG+ AA + L + I + + A + ++G
Sbjct: 258 YFLEASAFSFIVF--LIAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRR 315
Query: 312 KYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVP 371
++ RA+ I+ ++V + +A VL + +FR P+ ++ +DP V++ + VL L +
Sbjct: 316 EFSRARYISGVSLVSGWMLAVITVLSLVLFRSPLVSMYNNDPAVLSIAATVL---LFAGL 372
Query: 372 FFNGIFVVVTGVFSSAGHTVKS--MVMSMLRLWGFRIPLSYAFGY 414
F F ++ G+ V M + WG + Y Y
Sbjct: 373 FQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAY 417
>dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 458
Score = 88.5 bits (216), Expect = 1e-16
Identities = 104/459 (22%), Positives = 191/459 (40%), Gaps = 49/459 (10%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
K L + PI++ + N DT G+ G L+ + + + G +A
Sbjct: 12 KLFLVVMMPILITQIGLYAMNFFDTVMSGQAGANDLAGVAIGSSLWVPVFTGLNGVLLAL 71
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALD----FMNVTPSIR 135
I+ Q IGA + +F L+ S ++ ILI + LD M++ +
Sbjct: 72 TPIIAQSIGA----EKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVG 127
Query: 136 PYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF---- 191
A Y I + G+ F++ L+ + G+T+ + I+ L++ +NI + + IF
Sbjct: 128 RIAKEYLIGLAFGIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINIFFNYVLIFGKLG 187
Query: 192 IFKLGVLGAALAT------VLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVR 245
+LG +GA A+ +L+ A+ ++ V+ + K+ LK WK +I+
Sbjct: 188 FPRLGGVGAGYASAITYWFILAVAIVVVVKVRPFTDFQLFKKLYHVSLKK-WK---EILL 243
Query: 246 VGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVA 305
+GLP + F +T ++ F T AA+ +F+ I I+ + V
Sbjct: 244 LGLPIGFTIFFETSIFAAVTLLMSTFDTATIAAHQAAVNFASFLYMIPLSIAFTLTIAVG 303
Query: 306 QNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEY 365
VGA++ E A+ + + + A ++I V R P+ ++ +D +V +++
Sbjct: 304 YEVGAKRVEDARQYSRLGITFALIMGLVAGVIIYVLRAPVASLYTNDSQV----AWLIQQ 359
Query: 366 FLISVPFF---NGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLG 422
FLI FF + + + GV VM+++ W +P Y
Sbjct: 360 FLIYSIFFQLSDALATPIQGVLRGHKDVNVPFVMALVSFWIIGLPTGYL----------- 408
Query: 423 IRIPMAELFNFTSRGVF-FGMGLSNFLAA-IIGLAWFLK 459
L NF+ G + + +GL LA+ I L+W LK
Sbjct: 409 -------LANFSPLGPYGYWIGLITGLASCAIALSWRLK 440
>pir||B83476 probable transporter PA1361 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947303|gb|AAG04750.1|AE004565_9
(AE004565) probable transporter [Pseudomonas aeruginosa]
Length = 477
Score = 87.4 bits (213), Expect = 3e-16
Identities = 96/401 (23%), Positives = 153/401 (37%), Gaps = 9/401 (2%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
K LL LA PI++ L D G+ L+A + I + L G +A
Sbjct: 19 KELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMTGTLLAT 78
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
+ V Q GAGD L L LS + + L M V P + +
Sbjct: 79 TAKVAQRHGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIGPSL 138
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y I G P + L+ V G T+ + + + LNI ++ I+ + K+
Sbjct: 139 LYLKGIALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGMPKM 198
Query: 196 GVLGAALAT---VLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSI 252
G G AT + +G + V +A + + PD +V VGLP I
Sbjct: 199 GGPGCGWATGSVMWFMFLGMLFWVNKASIYRASQLFSRWEW-PDRATIGPLVAVGLPIGI 257
Query: 253 GQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEK 312
A S F V+ +I G + A + I + I + MA+ V N+GA
Sbjct: 258 AVFAESSIFSVIALLIGGLDENVVAGHQIALNFSALVFMIPYSLGMAVTVRVGHNLGAGL 317
Query: 313 YERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPF 372
A+ A M A + ++ + R I ++ DP VIA + ++ F F
Sbjct: 318 PRDARFAAGVGMAAALGYACVSASLMLLLREQIAAMYSPDPAVIAIAASLI-VFSALFQF 376
Query: 373 FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFG 413
+ + V G T +M+M++ WG +P+ Y+ G
Sbjct: 377 SDALQVTAAGALRGYQDTRVTMIMTLFAYWGIGLPVGYSLG 417
>pir||H82186 probable multidrug resistance protein NorM VC1540 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656046|gb|AAF94694.1| (AE004232) multidrug
resistance protein NorM, putative [Vibrio cholerae]
Length = 461
Score = 85.8 bits (209), Expect = 9e-16
Identities = 84/400 (21%), Positives = 161/400 (40%), Gaps = 12/400 (3%)
Query: 22 LLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGFS 81
L+KLA P+++ ++ Q DT G + ++A +A I + G+G MA
Sbjct: 15 LIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVP 74
Query: 82 IVGQYIGAGDFKKA--NRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
+V Q GAG K G + +L++ ++ L + + FM+V ++
Sbjct: 75 VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFI---IRFMDVEEAMATKTV 131
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y + VP LF + TK + I + + LNI L+ IF++ +L
Sbjct: 132 GYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPEL 191
Query: 196 GVLGAALATVLSNAVGTIIGVKILMSGK--AGLKITLEDLKPDWKFYSKIVRVGLPSSIG 253
G +G +AT + + ++ + +++ K A +K+ KP K ++ R+G P +
Sbjct: 192 GGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAA 251
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
F V+ ++ G AA+ + + + I A+ V +G +
Sbjct: 252 LFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDT 311
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFF 373
+ A + A ++ A A L+ +FR I ++ ++ V+A + +L F
Sbjct: 312 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL-LFAAIYQCM 370
Query: 374 NGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFG 413
+ + VV G + + W +P Y G
Sbjct: 371 DAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 410
>sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF INTERGENIC REGION
>gi|1742737|dbj|BAA15430.1| (D90809) ORF_ID:o319#7;
similar to [SwissProt Accession Number P37340]
[Escherichia coli] >gi|1742747|dbj|BAA15439.1| (D90810)
ORF_ID:o319#7; similar to [SwissProt Accession Number
P37340] [Escherichia coli]
Length = 457
Score = 79.2 bits (192), Expect = 9e-14
Identities = 87/411 (21%), Positives = 162/411 (39%), Gaps = 17/411 (4%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ LL LA P+++ + Q DT G ++A + I + G G +A
Sbjct: 9 RLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLAL 68
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
++ Q G+G ++ F L F S L L+ + N+ P++ A
Sbjct: 69 TPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAV 128
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y + G P F V TK + + + + +NI ++ IFI+ + +L
Sbjct: 129 GYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPEL 188
Query: 196 GVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLED--LKPDWKFYSKIVRVGLPSSIG 253
G +G +AT V + V + ++ I E KPD +++++GLP ++
Sbjct: 189 GGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALA 248
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
F V+ ++ G V A + I + + + ++ A+ V +G
Sbjct: 249 LFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGST 308
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVI---AESKIVLEYFLISV 370
A+ A ++V +A + R I ++ D+PEV+ A ++ + IS
Sbjct: 309 LDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQIS- 367
Query: 371 PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFL 421
+ I V+ +G+ T ++ W +P GYI A+T L
Sbjct: 368 ---DSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLP----SGYILALTDL 411
>pir||H75559 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457769|gb|AAF09695.1|AE001873_5 (AE001873)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 451
Score = 79.2 bits (192), Expect = 9e-14
Identities = 98/458 (21%), Positives = 180/458 (38%), Gaps = 50/458 (10%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ LL+LA P+VV+ + T +G+LG L+A A + + +G ++
Sbjct: 16 RALLRLAGPVVVSQFAANALALIATAVIGRLGERELAAAAYANAAYYLVFIMVVGVMLSV 75
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPS--IRPY 137
V Q GAGD + R+ G L L LSA++ L+ L+ N P+ R
Sbjct: 76 APRVAQAHGAGDARGVARALGGGLRLALL---LSAVMLPLMWALSFVLPNFAPAGVSRDL 132
Query: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IF 193
Y V G+ + F+ + TG ++ V +++ P F +
Sbjct: 133 VAAYLRVYSLGMLPNLAFIALRGTLEGTGKPGAVTGVALTGVVWALLVAPALAFGWGPLP 192
Query: 194 KLGVLGAA-----LATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGL 248
+LG+ GAA A +++ + + ++ +G G P + R+G
Sbjct: 193 RLGLAGAAGASASAAWIMAALLWPLARRRVAYAGPLG---------PLGDEVRALFRLGW 243
Query: 249 PSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNV 308
P + A F V T ++ FG AA+ +T + + + GI+ A G V
Sbjct: 244 PIGLTLGAEGGMFSVTTLLMARFGPEVLAAHNVTMQTITAFFMVPLGIASATGVRVGTEA 303
Query: 309 GAEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRV----PIFKVF--LDDPEVIAESKIV 362
GA + +A+ R +V ++ +L V + +F VF ++DP
Sbjct: 304 GAGRLAQAR----RAGLVGLGLSSAVMLTFAVIELAAPRTVFSVFVNVNDPANAGLIAAA 359
Query: 363 LEYFLISVPF--FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITF 420
+ I+ F +G+ V G T +++S++ W +
Sbjct: 360 TGFLSIAALFQLMDGLQVTANGALRGLQDTRVPLLVSLVAYW---------------VVG 404
Query: 421 LGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFL 458
LG+ ++ + +RG++FG+ LA + + FL
Sbjct: 405 LGLGSVLSSVAGLGARGLWFGLTAGLTLAGLSLVGRFL 442
>pir||F70172 conserved hypothetical integral membrane protein BB0583 - Lyme
disease spirochete >gi|2688514|gb|AAB91524.1| (AE001160)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 449
Score = 77.3 bits (187), Expect = 4e-13
Identities = 95/462 (20%), Positives = 187/462 (39%), Gaps = 42/462 (9%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
I K L +A P +L+ + D F + LG ++ +A + + G
Sbjct: 11 IIKELFVIAIPTAFESLLFQMVTFFDNFMISYLGSFHVTGVSLANRVTFLFFIIVFGLGT 70
Query: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPY 137
A + V Q I F + +S + + + + S L + +
Sbjct: 71 ALSAYVSQAIAKKKFLQVRQSFAYILLIGTTIGIIFFIFSFLFPRNIIKLFTANQDSLNF 130
Query: 138 AYRYAIVIFAGVPVSFLFMVFNAL----MRATGDTKTPVKISALTVFLNIILDPIFIFIF 193
Y +I +S++ M ++ L ++ + K P+ ++++ V +NI+ + I IF F
Sbjct: 131 GSEYLKII----SLSYVLMAYSFLSAMGFKSAKEVKIPLYVTSIVVLINIVFNYILIFGF 186
Query: 194 KLGVLGAALATVLSNAVGTII-GVKILMSGKAGLKITLEDLKPDWKFYSKIV-RVGLPSS 251
+G+ GAA ATVL+ V + + L+S + +I D F K+V R L
Sbjct: 187 SMGIKGAAYATVLARIVEFVFYFLYSLISSNSYYRIKFGDF-----FAPKVVTRANLKLI 241
Query: 252 IGQSANSFGFVVLTRIIMGF----GDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQN 307
I ++ +V+ I+ F G + YA++ + + L + + G+ +A G ++
Sbjct: 242 IPVLSHEIFWVLSITILHAFYARVGSIEYASFAVASNLFDICFVLLHGMGLATGVVIGHL 301
Query: 308 VGAEKYERAKVIAERTMVVNFAIAGFAV-LVIGVFR-VPIFKVFLDDPEVIAESKIVLEY 365
+ +K + + + + F + F V L+IG+ P LD PE+++ V Y
Sbjct: 302 MIYDK-KHVRSVGFFLSFLGFLLGIFVVILLIGISSFAPYIFSKLDSPELVS----VFIY 356
Query: 366 FLISVPFFNGIFV-VVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIR 424
S+ F V+ GVF ++G + + + +P++Y + + +
Sbjct: 357 VFASIVIFKAFTAQVLVGVFRASGIPNVCFFIESGVIVFYTLPVAYLL-----VFYTNLS 411
Query: 425 IPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRI 466
+P+ V F + L + I + F W+R I
Sbjct: 412 LPI----------VVFIVNLEEIIKNIFIIIEFFHDDWIREI 443
>pir||A64924 probable membrane protein ydhE precursor - Escherichia coli
>gi|1549276|gb|AAB47941.1| (U68703) hypothetical protein
YdhE [Escherichia coli] >gi|1787953|gb|AAC74735.1|
(AE000261) putative transport protein [Escherichia coli
K12]
Length = 457
Score = 76.9 bits (186), Expect = 5e-13
Identities = 86/411 (20%), Positives = 161/411 (38%), Gaps = 17/411 (4%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ LL LA P+++ + Q T G ++A + I + G G +A
Sbjct: 9 RLLLALAIPVILAQIAQTAMGFVSTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLAL 68
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
++ Q G+G ++ F L F S L L+ + N+ P++ A
Sbjct: 69 TPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAV 128
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y + G P F V TK + + + + +NI ++ IFI+ + +L
Sbjct: 129 GYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPEL 188
Query: 196 GVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLED--LKPDWKFYSKIVRVGLPSSIG 253
G +G +AT V + V + ++ I E KPD +++++GLP ++
Sbjct: 189 GGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALA 248
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
F V+ ++ G V A + I + + + ++ A+ V +G
Sbjct: 249 LFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGST 308
Query: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVI---AESKIVLEYFLISV 370
A+ A ++V +A + R I ++ D+PEV+ A ++ + IS
Sbjct: 309 LDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQIS- 367
Query: 371 PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFL 421
+ I V+ +G+ T ++ W +P GYI A+T L
Sbjct: 368 ---DSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLP----SGYILALTDL 411
>gb|AAD30646.1|AC006085_19 (AC006085) Hypothetical protein [Arabidopsis thaliana]
Length = 501
Score = 76.9 bits (186), Expect = 5e-13
Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 22/301 (7%)
Query: 102 LFSLVLFFSTLSALISILILPLALDFMNV---TPSIRPYAYRYAIVIFAGVPVSFLFMVF 158
LF V S L+S FM V +P +RP + RY + G P L +
Sbjct: 178 LFQAVFLISAAKPLLS---------FMGVKHDSPMMRP-SQRYLSLRSLGAPAVLLSLAA 227
Query: 159 NALMRATGDTKTPVKISALTVFLNIILDPIFIFIFKLGVLGAALATVLSNAVGTIIGVKI 218
+ R DT TP+ + + NIILDPIFIF+F+LGV GAA A V+S + I +
Sbjct: 228 QGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWK 287
Query: 219 LMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAA 278
LM ++ + ++ + + ++ G + A +F + + G + AA
Sbjct: 288 LMG-----QVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAA 342
Query: 279 YVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVI 338
+ + ++ + ++ G ++A ++A + Y+RA A R + + + +++
Sbjct: 343 FQVCLQVWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVIL 402
Query: 339 GVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPFFNGIFVVVTGV---FSSAGHTVKSMV 395
G +VF D +V+ I L + + P N + V GV S G+ S+V
Sbjct: 403 GAGLHFGARVFTKDDKVLHLISIGLPFVAGTQP-INALAFVFDGVNFGASDFGYAAASLV 461
Query: 396 M 396
M
Sbjct: 462 M 462
>gi|8922709 hypothetical protein FLJ10847 [Homo sapiens]
>gi|7023138|dbj|BAA91852.1| (AK001709) unnamed protein
product [Homo sapiens]
Length = 570
Score = 75.7 bits (183), Expect = 1e-12
Identities = 93/432 (21%), Positives = 182/432 (41%), Gaps = 33/432 (7%)
Query: 5 KVKAMRREILEGPIEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPI 64
++ A R E+ + LL LA P + L+ L + + + G LG+ L A +A +
Sbjct: 27 RLSAFREEL------RALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAV 80
Query: 65 IG-TLMALGMGFTMAGFSIVGQYIGAGDFKKAN----RSAGALFSLVLFFSTLSALISIL 119
I T +++G G + A +++ Q G+ + K RSA LVL L
Sbjct: 81 INVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSA-----LVLLLCCFPCWALFL 135
Query: 120 ILPLALDFMNVTPSIRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTV 179
L P + Y + +P +FL+M+ + G +
Sbjct: 136 NTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAAN 195
Query: 180 FLNIILDPIFIFIFKLGVLGAALATVLSNAVGT------IIGVKILMSGKAGLKITLEDL 233
+N + + +F+ LGV+G+ALA ++S I+G K+ + G +LE L
Sbjct: 196 LVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGW--SLECL 253
Query: 234 KPDWKFYSKIVRVGLPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSIS 293
+ DW + +R+ +PS + + + V + + G V A I L + +
Sbjct: 254 Q-DW---ASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAIIVYMVL 309
Query: 294 RGISMAMGTMVAQNVGAEKYERAKVIAERTMVVN--FAIAGFAVLVIGVFRVPIFKVFLD 351
G S+A V +GA E+A+ + ++++ FA+A F+VL++ + + +F
Sbjct: 310 AGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVA-FSVLLLSC-KDHVGYIFTT 367
Query: 352 DPEVIAESKIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYA 411
D ++I V+ + +S F + GV +G+ +++ + + +P+ A
Sbjct: 368 DRDIINLVAQVVPIYAVS-HLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIA 426
Query: 412 FGYIPAITFLGI 423
+ + +G+
Sbjct: 427 LMFATTLGVMGL 438
>pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107925|gb|AAF85483.1|AE004074_7
(AE004074) multidrug efflux protein [Xylella fastidiosa]
Length = 469
Score = 74.5 bits (180), Expect = 2e-12
Identities = 103/457 (22%), Positives = 177/457 (38%), Gaps = 49/457 (10%)
Query: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
+ TLL LA P+V+ ++ L G L+A + ++ M + MG +
Sbjct: 30 VRPTLL-LALPLVLGHVSTGLIGFVLNVIAGHHSTVTLAASTIGTALLWLPMLVPMGTLI 88
Query: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALIS---ILILPLALDFMNVTPSI 134
+ +V Q GA + R G LF L+ + L L+ + ++P L + P I
Sbjct: 89 SLTVLVSQLHGA----ERERDIGPLFRQALWLAMLLGLVMFTFLSVVPALLPLFGIVPDI 144
Query: 135 RPYAYRYAIVIFAG---VPVSFLFMVFNALMRATGDTKTPVKISALTVF--LNIILDPIF 189
P A ++ V+ G P+ F F M T T + L V L+ L
Sbjct: 145 VPGAAKFLHVVRWGSLAFPLYFCMRYFCEGMHCTFPTML-LGFGGLLVLVPLSYALTYGR 203
Query: 190 IFIFKLGVLGAALATVLSNAVGTIIGVKILMSGK--AGLKITLEDLKPDWKFYSKIVRVG 247
+ GV G +ATV+ + ++ L + A L++ P W ++ +G
Sbjct: 204 FGFSEYGVEGLGIATVMVMWLQAVVFALYLWRSRRFAHLQLFAHLELPCWARIRDLLNIG 263
Query: 248 LPSSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQN 307
LP I F+V T +I FG AA+ I + I G++ A +
Sbjct: 264 LPIGISILMEGGLFIVTTLLIGRFGTDEIAAHQIALSVAQLCFMIPMGVAEATTVRIGHA 323
Query: 308 VGAEKYERAKVIAERTMVVNFAIAGFAVLV--------IGVFRVPIFKVFLDDPEVIAES 359
VG R ++ R + A AG+A+++ + + + D V+A
Sbjct: 324 VG-----RCDLLVMRRV----AWAGYAIVIGTQTLSASVLLLGYDVIVAAYTDDLVVASL 374
Query: 360 KIVLEYFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAIT 419
L F F +G+ ++ +GV T M+++M+ WG +PL G+
Sbjct: 375 ASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLAMISYWGLGMPLGLGLGF----- 429
Query: 420 FLGIRIPMAELFNFTSRGVFFGMGLSNFLAAIIGLAW 456
+ SRG++ G+ + AA + L W
Sbjct: 430 ----------ALEWNSRGMWIGL-IIGLTAAAVLLGW 455
>pir||T50435 conserved hypothetical protein SPCC4B3.13 [imported] - fission
yeast (Schizosaccharomyces pombe)
>gi|6434021|emb|CAB60687.1| (AL132870) conserved
hypothetical protein [Schizosaccharomyces pombe]
Length = 539
Score = 73.0 bits (176), Expect = 7e-12
Identities = 77/343 (22%), Positives = 154/343 (44%), Gaps = 13/343 (3%)
Query: 22 LLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVA-WPIIGTLMALGMGFTMAGF 80
L+K A P+V+ +L+Q +T F LG LG+ L+A ++ T A+ G A
Sbjct: 100 LIKFATPVVLTSLLQYGEVVTTVFSLGHLGKTELAAASLSNMTATITAFAIYQGIVSALD 159
Query: 81 SIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAYR 140
++ Q G+G+++ + +++L LI I + L F+ P +A +
Sbjct: 160 TVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILL-FLRQDPLTCMFAAK 218
Query: 141 YAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFI--FKLGVL 198
Y V+ P LF ++ G I A+ V +NI L+ +F++ G L
Sbjct: 219 YMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFL 278
Query: 199 GA--ALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQSA 256
GA A+A L +A +I + ++G+ + +W + R+ +P I +
Sbjct: 279 GAPVAVALTLWSACAVLIIYIMKVNGRQAWGGFSREALKNW---GPLCRLAVPGVIMICS 335
Query: 257 NSFGFVVLTRI--IMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKYE 314
+ F ++T ++G ++ + + TT +++ +++ G++ A T V +GA +
Sbjct: 336 EYWAFELVTFASGVLGTTELASMSVLSTTSTLSY--NLAFGVAAAAATRVGNLIGAGNTK 393
Query: 315 RAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIA 357
AK+ ++ + AI +++ + R +F D +V+A
Sbjct: 394 LAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVA 436
>pir||G70693 probable dinF protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1648884|emb|CAB03650.1| (Z81331) dinF [Mycobacterium
tuberculosis]
Length = 439
Score = 72.6 bits (175), Expect = 9e-12
Identities = 94/430 (21%), Positives = 179/430 (40%), Gaps = 35/430 (8%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
+ + +LA P + + LY + D +G+LG A+S G+A IG+L+ LG+ + A
Sbjct: 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLG--AISLAGLA---IGSLV-LGLVGSQAT 64
Query: 80 FSIVGQYIGAGD-FKKANRSAGALFSLVLFFSTLS--ALISILILPLALDFMNVTPS--- 133
F G A + NR A + + L AL+ +++ A ++ S
Sbjct: 65 FLSYGTTARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDG 124
Query: 134 IRPYAYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF-- 191
I A + + G P + + N +R DT P++ + +L P+ ++
Sbjct: 125 ITAAALPWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGW 184
Query: 192 --IFKLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLP 249
+ + G+ G+A+A ++ + ++ L++ + L+ PD + +
Sbjct: 185 LGLPRWGLTGSAVANLVGQWLAALLFAGALLAERVSLR-------PDRAVLGAQLMMARD 237
Query: 250 SSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVG 309
+ A +V + FG AA+ + +L + + +++A ++V +G
Sbjct: 238 LIVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALG 297
Query: 310 AEKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLIS 369
A AK +A R + AG +G+ + +F DD V+A + + ++
Sbjct: 298 AGDAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTDDRSVLAAIGVPWWFMVVQ 357
Query: 370 VPFFNGIFVVVTGVFSSAGH-------TVKSMVMSMLRL-WGFRIPLSYAFGYIPAITFL 421
+P F GI V GV AG TV S ++ L L W + L+Y +G + L
Sbjct: 358 LP-FAGIVFAVDGVLLGAGDAAFMRTATVASALVGFLPLVW---LSLAYGWGLAGIWSGL 413
Query: 422 GIRIPMAELF 431
G I + +F
Sbjct: 414 GTFIVLRLIF 423
>pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951609|gb|AAG08679.1|AE004942_2
(AE004942) hypothetical protein [Pseudomonas aeruginosa]
Length = 488
Score = 70.6 bits (170), Expect = 4e-11
Identities = 77/304 (25%), Positives = 125/304 (40%), Gaps = 7/304 (2%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAG 79
K +L+LA P++ L V TDT +GKLG +AL+A G+ + +G A
Sbjct: 10 KAILRLAGPLIAAQLAYVAMVFTDTVMMGKLGPDALAAGGLGAVSYAFVSTFCVGVVAAV 69
Query: 80 FSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYAY 139
++V G D A +A + + + + L+ + PL L F P A
Sbjct: 70 GNLVAIRHGCDDAAGAAAAARSGLWVGAALALAAGLLLWNLRPLLLVF-GQAPQTVDGAM 128
Query: 140 RYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFI----FIFKL 195
++ + +P FMV A + IS L N+ L+ FI + +L
Sbjct: 129 QFLHSLTFALPGYMAFMVLRGFTSAIDRAGPVMAISVLGALANLALNYSFIEGLFGLPRL 188
Query: 196 GVLGAALATVL-SNAVGTIIGVKILMSGKAGLKITLEDL-KPDWKFYSKIVRVGLPSSIG 253
G+ G L T L N + ++ + I + L L +P +I+R+GLP
Sbjct: 189 GLAGIGLVTALVMNCMPLLLALYIRLQPAYAEYSLLRGLGRPQRAMVEEILRLGLPIGGT 248
Query: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
+ S F V T + GD AA+ I + V + G+S A + Q+ GA +
Sbjct: 249 YAVESGMFTVATLCMGIIGDHALAAHQIAIQAVYVAFMVPVGLSYATTYRIGQHFGAGRL 308
Query: 314 ERAK 317
A+
Sbjct: 309 LEAR 312
>gb|AAC67367.1| (AC005499) hypothetical protein [Arabidopsis thaliana]
Length = 486
Score = 70.2 bits (169), Expect = 5e-11
Identities = 96/458 (20%), Positives = 196/458 (41%), Gaps = 37/458 (8%)
Query: 21 TLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGM--GFTMA 78
+L K+A PIV+ +L+ +I ++L LG+ L+ +A G + + + G ++
Sbjct: 9 SLTKIACPIVMTSLLIFSRSIISMWFLSHLGKVELAGGALAMGF-GNITGVSVLKGLSVG 67
Query: 79 GFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPYA 138
I GQ GA + + + +F L++ S A+ + I P+ L + P I A
Sbjct: 68 MDPICGQAFGAKRWTVLSHTFQKMFCLLIVVSVPIAVTWLNIEPIFLR-LGQDPDITKVA 126
Query: 139 YRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIFIF----K 194
Y + + + +R G T +P+ ISA+ ++I+L P+F ++F +
Sbjct: 127 KTYMLFFVPELLAQAMLHPLRTFLRTQGLT-SPLTISAI---VSILLHPLFNYVFVVRMR 182
Query: 195 LGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDL--KPDWKFYSKIVRVGLPSSI 252
LGV G A+A N + +G+ + L E L + ++ + ++ + PS+I
Sbjct: 183 LGVKGVAIAMAF-NTMNIDVGLLVYTCFSDSLIKPWEGLALRSLFRGWWPLLSLAAPSAI 241
Query: 253 GQSANSFGFVVLTRI--IMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA 310
+ + ++ + ++G + AA I + + + IS A+ T V +G
Sbjct: 242 SVCLEYWWYEIMLFLCGLLGNPKASVAAMGILIQTTGILYVVPFAISSAIATRVGHALGG 301
Query: 311 EKYERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISV 370
+ RA+ +++ A A + + R K+F D+PE++ LIS
Sbjct: 302 GQPTRAQCTTVIGLILAVAYGLAAAVFVTALRSVWGKMFTDEPEILG---------LISA 352
Query: 371 PFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPMAEL 430
+ + G+ G++ ++ +L G P A + A +G+ + +
Sbjct: 353 A------LPILGL-CEIGNSPQTAACGVLT--GTARPKDGARVNLCAFYIVGLPVAVTTT 403
Query: 431 FNFT--SRGVFFGMGLSNFLAAIIGLAWFLKGSWMRRI 466
F F RG++FG+ + ++ L ++ W ++
Sbjct: 404 FGFKVGFRGLWFGLLSAQMTCLVMMLYTLIRTDWSHQV 441
>gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporter [Burkholderia
vietnamiensis]
Length = 462
Score = 69.5 bits (167), Expect = 8e-11
Identities = 86/400 (21%), Positives = 163/400 (40%), Gaps = 19/400 (4%)
Query: 24 KLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTMAGFSIV 83
+LA P+ + L Q+ ++TDT LG LG ++L+A G+ ++ + G + V
Sbjct: 25 RLAAPLAIAQLSQMAMSVTDTVLLGSLGPDSLAAGGLGANFFFVIVTVLQGVLSSVSVSV 84
Query: 84 GQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLA---LDFMNVTPSIRPYAYR 140
GA +A ++ S L A+ +++ L L+ L + P++ +
Sbjct: 85 AHARGA----QAEHRVPHIYWTGFVLSVLLAIPAVVALSLSEPLLLMFHEPPTLAQHVGE 140
Query: 141 YA-IVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IFKL 195
Y I+ FA + + A + A G + + +S + +N +L+ I + +L
Sbjct: 141 YTGILRFAALGSLIGVGLMRAFLPAIGAARRLLWVSIGGIGVNAVLNYGLIHGAYGLPRL 200
Query: 196 GVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIGQS 255
G LG+A+AT ++ + T + L+ G+A + + +P +++ +G P +I
Sbjct: 201 GFLGSAVATTITIWL-TAFALIWLLHGRARFRHFVSAARPKLPMMGELIGIGWPVAITYG 259
Query: 256 ANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGA---EK 312
S F+ + G AA+ I + + + I A V +GA
Sbjct: 260 VESTLFLATGLTVGVLGATALAAHQIALNVASVAFMVPLAIGQAANVRVGYWIGAGDPVA 319
Query: 313 YERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFLDDPEVIAESKIVLEYFLISVPF 372
A +A V +++G VL++ + + LDDP A + I+ F
Sbjct: 320 ARHAGFVALGLGVAFMSLSGL-VLILAPHAIVGLYLHLDDPANAATVSLAASLLGIAAVF 378
Query: 373 --FNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSY 410
+G+ V +G T M+ + WG P Y
Sbjct: 379 QIVDGMQTVGSGALRGLRDTRIPMLAATFGYWGIGFPTGY 418
>dbj|BAA97535.1| (AB028606) emb|CAA66809.1~gene_id:F16F17.3~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 498
Score = 69.5 bits (167), Expect = 8e-11
Identities = 99/454 (21%), Positives = 189/454 (40%), Gaps = 46/454 (10%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTL---MALGMGFT 76
K L LA P + ++ Q + G + AL+A V +I + LGMG
Sbjct: 47 KKLWYLAGPAIFMSITQYSLGAATQVFAGHISTIALAAVSVENSVIAGFSFGVMLGMGSA 106
Query: 77 MAGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRP 136
+ ++ GQ GAG + ++ + + +L+ I P+ L F+ TP+I
Sbjct: 107 LE--TLCGQAFGAGKLSMLGVYLQRSWVILNVTAVILSLLYIFAAPI-LAFIGQTPAISS 163
Query: 137 YAYRYAIVIFAGVPVSFLFMV---FNALMRATGDTKTPVKISALTVFLNIILDPIFIFIF 193
++I + +P F + V +++ ISA+ + L+++L I
Sbjct: 164 ATGIFSIYM---IPQIFAYAVNYPTAKFLQSQSKIMVMAAISAVALVLHVLLTWFVIEGL 220
Query: 194 KLGVLGAALATVLSNAVGTIIGVKILM-----SGKAGLKITLEDLKPDWKFYSKIVRVGL 248
+ G G LA VL+ + I+ +++ G+A + E W F VR+ L
Sbjct: 221 QWGTAG--LAVVLNASWWFIVVAQLVYIFSGTCGEAWSGFSWEAFHNLWSF----VRLSL 274
Query: 249 PSSIGQSANSFGFVVLTRIIMGF---GDVTYAAYVITTRLVNFITSISRGISMAMGTMVA 305
S++ + +++ + G+ +++ AA I ++ + I+ G++ A+ V+
Sbjct: 275 ASAVMLCLEVW-YLMAVILFAGYLKNAEISVAALSICMNILGWTAMIAIGMNAAVSVRVS 333
Query: 306 QNVGAEKYERAKVIAERTMVVNFAIAGFAV-LVIGVFRVPIFKVFLDDPEVIAESKIVLE 364
+GA K+ R + V+ + G A+ + + +FR +F+ D EVI K +
Sbjct: 334 NELGA-KHPRTAKFSLLVAVITSTVIGLAISIALLIFRDKYPSLFVGDEEVIIVVKDLTP 392
Query: 365 YFLISVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIR 424
+S+ N + V++GV AG ++++ + F IP GY
Sbjct: 393 ILAVSI-VINNVQPVLSGVAVGAGWQAVVAYVNIVCYYVFGIPFGLLLGY---------- 441
Query: 425 IPMAELFNFTSRGVFFGMGLSNFLAAIIGLAWFL 458
NF G++ GM L+ + I L W +
Sbjct: 442 -----KLNFGVMGIWCGM-LTGTVVQTIVLTWMI 469
>dbj|BAB10095.1| (AB023028) gb|AAF34304.1~gene_id:K20J1.11~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 502
Score = 69.5 bits (167), Expect = 8e-11
Identities = 88/390 (22%), Positives = 167/390 (42%), Gaps = 67/390 (17%)
Query: 20 KTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFT-MA 78
K + +++P+ +++ L N+T +G+LG L+ AL +GFT +
Sbjct: 28 KRIWDISFPVAAMSILNYLKNMTSVVCMGRLGSLELAGG-----------ALAIGFTNIT 76
Query: 79 GFSIV-----------GQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDF 127
G+S++ GQ IG+ + A+ + L+L S LP++L +
Sbjct: 77 GYSVLSGLATGMEPLCGQAIGSKNPSLASLTLKRTIFLLLLAS----------LPISLLW 126
Query: 128 MNVTPSIRPYAYRYAIVIFAGVPVSFLF--MVFNALM-------RATGDTKTPVKISALT 178
+N+ P + ++ I A + SF ++ N+ + R G T + + ++
Sbjct: 127 LNLAPLMLMLRQQHDITRVASLYCSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVS 186
Query: 179 VFLNIILDPIFIFIFKLGVLGAALATVLSNAVG-TIIGVKILMSGKAGLKITLEDLKPDW 237
V L++ + F F LGV G A+++ L+N + +++ I + K T + L D
Sbjct: 187 VLLHLPITAFFTFYISLGVPGVAVSSFLTNFISLSLLLCYIYLENNNNDKTTSKSLCLDT 246
Query: 238 KF-------------YSKIVRVGLPSSIGQSANSFGFVVLTRIIMGF---GDVTYAAYVI 281
+S +V+ +PS I + + +T ++ G+ V AA I
Sbjct: 247 PLMLYGSRDSGENDVWSTLVKFAVPSCIAVCLEWWWYEFMT-VLAGYLPEPKVALAAAAI 305
Query: 282 TTRLVNFITSISRGISMAMGTMVAQNVGAEKYERAKVIAERTMVVNFAIAGFAVLVIGVF 341
+ + + +I +S A+ T V+ +GA + E+AK A + A++ F ++ V
Sbjct: 306 VIQTTSLMYTIPTALSAAVSTRVSNELGAGRPEKAKTAATVAVGAAVAVSVFGLVGTTVG 365
Query: 342 RVPIFKVFLDDPEVIAESKIVLEYFLISVP 371
R KVF D K+VLE +P
Sbjct: 366 REAWGKVFTAD-------KVVLELTAAVIP 388
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.144 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154097004
Number of Sequences: 2977
Number of extensions: 6268290
Number of successful extensions: 19731
Number of sequences better than 1.0e-10: 65
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 19519
Number of HSP's gapped (non-prelim): 85
length of query: 468
length of database: 189,106,746
effective HSP length: 54
effective length of query: 414
effective length of database: 156,788,448
effective search space: 64910417472
effective search space used: 64910417472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)