BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1442 (PAB1442) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75052 hypothetical protein PAB1442 - Pyrococcus abyssi (st...   228  2e-59
pir||E71171 hypothetical protein PH0569 - Pyrococcus horikoshii ...   166  1e-40

>pir||F75052 hypothetical protein PAB1442 - Pyrococcus abyssi (strain Orsay)
           >gi|5458828|emb|CAB50315.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  228 bits (574), Expect = 2e-59
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MKVYYPGRKWPREYEEVLNELKNVIDPVTGESILDSGILAGLEVSGRTLKVWLKFESLAE 60
           MKVYYPGRKWPREYEEVLNELKNVIDPVTGESILDSGILAGLEVSGRTLKVWLKFESLAE
Sbjct: 1   MKVYYPGRKWPREYEEVLNELKNVIDPVTGESILDSGILAGLEVSGRTLKVWLKFESLAE 60

Query: 61  YNILGGAAMAYSKIAGDIIERLALTKFDNVYVYDLRGNPVGVFESRGKKHE 111
           YNILGGAAMAYSKIAGDIIERLALTKFDNVYVYDLRGNPVGVFESRGKKHE
Sbjct: 61  YNILGGAAMAYSKIAGDIIERLALTKFDNVYVYDLRGNPVGVFESRGKKHE 111


>pir||E71171 hypothetical protein PH0569 - Pyrococcus horikoshii
           >gi|3256975|dbj|BAA29658.1| (AP000002) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  166 bits (415), Expect = 1e-40
 Identities = 76/107 (71%), Positives = 90/107 (84%)

Query: 1   MKVYYPGRKWPREYEEVLNELKNVIDPVTGESILDSGILAGLEVSGRTLKVWLKFESLAE 60
           +K+YY  R+WP EY +VL ++K +IDPVTGESILDSG+LAGLEV G TLKVWLKFES AE
Sbjct: 4   VKIYYKDREWPPEYRKVLEKMKEIIDPVTGESILDSGVLAGLEVKGDTLKVWLKFESNAE 63

Query: 61  YNILGGAAMAYSKIAGDIIERLALTKFDNVYVYDLRGNPVGVFESRG 107
           YNILG AAMAYSKI GDI+E+ AL  FD VYVYDL  NP+G+FE++G
Sbjct: 64  YNILGSAAMAYSKIVGDIMEKFALVMFDKVYVYDLGNNPIGIFENKG 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.140    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42606351
Number of Sequences: 2977
Number of extensions: 1503719
Number of successful extensions: 3857
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3855
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 189,106,746
effective HSP length: 51
effective length of query: 60
effective length of database: 158,583,909
effective search space: 9515034540
effective search space used: 9515034540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)