BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1443 (PAB1443) DE:SIMILARITY TO MYXOCOCCUS XANTHUS GUFA
PROTEIN
(254 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75052 gufA protein homolog PAB1443 - Pyrococcus abyssi (st... 495 e-139
pir||H71107 gufA protein homolog - Pyrococcus horikoshii >gi|325... 352 3e-96
pir||D70456 gufA protein homolog aq_1814 - Aquifex aeolicus >gi|... 210 2e-53
pir||G72550 probable gufA protein APE1691 - Aeropyrum pernix (st... 208 4e-53
pir||A72218 gufA protein - Thermotoga maritima (strain MSB8) >gi... 169 4e-41
pir||C83088 hypothetical protein PA4467 [imported] - Pseudomonas... 153 1e-36
pir||A69162 gufA protein homolog MTH473 - Methanobacterium therm... 147 1e-34
pir||A75447 gufA protein - Deinococcus radiodurans (strain R1) >... 137 2e-31
sp|Q06916|GUFA_MYXXA GUFA PROTEIN >gi|628449|pir||S39876 gufA pr... 133 2e-30
pir||C70127 gufA protein homolog - Lyme disease spirochete >gi|2... 133 2e-30
pir||T29905 hypothetical protein F59A3.4 - Caenorhabditis elegan... 115 4e-25
pir||F81444 probable integral membrane protein Cj0263 [imported]... 98 1e-19
pir||G81230 conserved hypothetical protein NMB0175 [imported] - ... 90 3e-17
gb|AAG19368.1| (AE005031) GufA protein; GufA [Halobacterium sp. ... 89 4e-17
pir||D82001 probable integral membrane protein NMA0093 [imported... 89 5e-17
sp|P24198|YGIE_ECOLI HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB I... 81 2e-14
gb|AAA69208.1| (U28377) ORF_o265; alternate name ygiE; orfB of M... 81 2e-14
dbj|BAB02495.1| (AB025629) gene_id:MOE17.18~unknown protein [Ara... 75 1e-12
gb|AAF26056.1|AC012562_11 (AC012562) unknown protein; 37802-3561... 74 2e-12
>pir||E75052 gufA protein homolog PAB1443 - Pyrococcus abyssi (strain Orsay)
>gi|5458827|emb|CAB50314.1| (AJ248287) SIMILARITY TO
MYXOCOCCUS XANTHUS GUFA PROTEIN [Pyrococcus abyssi]
Length = 254
Score = 495 bits (1261), Expect = e-139
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA 60
MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA
Sbjct: 1 MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA 60
Query: 61 IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH 120
IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH
Sbjct: 61 IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH 120
Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV
Sbjct: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
Query: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240
AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF
Sbjct: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240
Query: 241 LGFYLMLFLDTALG 254
LGFYLMLFLDTALG
Sbjct: 241 LGFYLMLFLDTALG 254
>pir||H71107 gufA protein homolog - Pyrococcus horikoshii
>gi|3257039|dbj|BAA29722.1| (AP000003) 269aa long
hypothetical Gufa protein [Pyrococcus horikoshii]
Length = 269
Score = 352 bits (893), Expect = 3e-96
Identities = 163/250 (65%), Positives = 208/250 (83%), Gaps = 2/250 (0%)
Query: 5 LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDIS 64
+I+A G+FVA MT+LG+L+A+F++RMP WG+D SL+FAAGVMIVASFTSLILPAID++
Sbjct: 22 IIVAVYAGIFVALMTTLGALIAIFANRMPDWGMDVSLSFAAGVMIVASFTSLILPAIDLT 81
Query: 65 SSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPE 124
SF P GIGI LG+ ++ +D FIPHEH+++GYEGPKEFK+K+K WL+ A+IIHNLPE
Sbjct: 82 GSFTPAGIGIFLGVLLIYGIDNFIPHEHIIKGYEGPKEFKEKLKLVWLVVLAVIIHNLPE 141
Query: 125 GIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMI 184
G+A+G+S+ Y+ G++T +AIGIQD PEGT VSLPLAT+QKKRL+PILLG LSG+AEM+
Sbjct: 142 GLAVGISIVYNLNAGLVTAIAIGIQDFPEGTVVSLPLATIQKKRLVPILLGALSGIAEMV 201
Query: 185 MVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFY 244
MV+LG FS LPYGL +AGGAMLYVT+KEMIPEIY ++ NE ++T GFFLGFY
Sbjct: 202 MVILGAFLFSIFKSFLPYGLGLAGGAMLYVTVKEMIPEIYK--RQENEKLVTLGFFLGFY 259
Query: 245 LMLFLDTALG 254
+MLFLD+ LG
Sbjct: 260 VMLFLDSMLG 269
>pir||D70456 gufA protein homolog aq_1814 - Aquifex aeolicus
>gi|2984109|gb|AAC07647.1| (AE000757) hypothetical
protein [Aquifex aeolicus]
Length = 243
Score = 210 bits (528), Expect = 2e-53
Identities = 119/249 (47%), Positives = 155/249 (61%), Gaps = 11/249 (4%)
Query: 3 ETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAID 62
E L++A L L T LGS L+LF S V SLAFAAGVM+VASFTSLILP I+
Sbjct: 2 EILLIASLLSLG----TFLGSFLSLFFR---SVNVGVSLAFAAGVMLVASFTSLILPGIE 54
Query: 63 ISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNL 122
I F+ GI LG F+++L++ PHEH+V+G EG + K+ + L+ + IHN+
Sbjct: 55 IGG-FWKTATGIVLGFFLMMLVEVLSPHEHVVKGKEGLIK-KESLNRLILIVIGITIHNV 112
Query: 123 PEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAE 182
PEGI++GV+ ++S G +AI +QD+PEG VSLPL + K L+P+++G LSG E
Sbjct: 113 PEGISVGVATSHSWNTGFPLAIAIAVQDIPEGLVVSLPLMVMMKSTLIPLIIGFLSGFIE 172
Query: 183 MIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLG 242
I V G LLPYGL GGAMLYVT+KE +PEIY G+ E IT F G
Sbjct: 173 SIFAVFGYYLMETFKNLLPYGLGFGGGAMLYVTVKEALPEIYASGE--RETKITLSFLTG 230
Query: 243 FYLMLFLDT 251
F LMLFLD+
Sbjct: 231 FLLMLFLDS 239
>pir||G72550 probable gufA protein APE1691 - Aeropyrum pernix (strain K1)
>gi|5105379|dbj|BAA80692.1| (AP000062) 269aa long
hypothetical gufA protein [Aeropyrum pernix]
Length = 269
Score = 208 bits (525), Expect = 4e-53
Identities = 110/251 (43%), Positives = 161/251 (63%), Gaps = 9/251 (3%)
Query: 8 AFKLGLFVAFMTSLGSLLALFSH----RMPSWGVDFSLAFAAGVMIVASFTSLILPAIDI 63
AF L L+ MTSLG L L + R+ +D + F++G+MIVASFTSL+LPA++I
Sbjct: 24 AFLLSLYAFAMTSLGGFLVLAARTHGGRLDVL-LDVGMGFSSGIMIVASFTSLLLPALEI 82
Query: 64 SSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLP 123
S + I +G + ++++ +PHEHL++GYEGP F+ K+KAAWL+A A+IIHNLP
Sbjct: 83 SGPGIVI-ISFIVGAIAVYIINEILPHEHLIKGYEGPPSFRRKVKAAWLVATAIIIHNLP 141
Query: 124 EGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEM 183
EG++IG + +Y+ ++G+ LAIG QD PEG AVSLP+ + +L+ +LSG +E+
Sbjct: 142 EGMSIGAAASYAISEGLAVALAIGTQDFPEGLAVSLPVFAASGSLYLALLVAMLSGFSEV 201
Query: 184 IMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGF 243
+ + +S LL L+ A GAM++V E +PE + G NE + T GFF GF
Sbjct: 202 VAATIVAALIGYSPGLLASALAFAAGAMVFVVSYEALPESHRSG---NEKLATVGFFAGF 258
Query: 244 YLMLFLDTALG 254
+ML+LDTALG
Sbjct: 259 IIMLYLDTALG 269
>pir||A72218 gufA protein - Thermotoga maritima (strain MSB8)
>gi|4982315|gb|AAD36803.1|AE001812_13 (AE001812) gufA
protein [Thermotoga maritima]
Length = 245
Score = 169 bits (423), Expect = 4e-41
Identities = 101/238 (42%), Positives = 142/238 (59%), Gaps = 10/238 (4%)
Query: 19 TSLGSLLALF--SHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGIGIAL 76
TSLG+L LF H +D L FAAGVM+ AS SL+ P++++ IG L
Sbjct: 16 TSLGALPFLFLKPHHTSDKVIDSFLGFAAGVMLAASAFSLVAPSLEMGG-IVRFLIGFVL 74
Query: 77 GIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAIGVSLAYSK 136
G + L DK IPHEHL++G+EGP ++K WL A+ IHN PEG+A+GVS A++
Sbjct: 75 GGLFVNLADKLIPHEHLLKGHEGPDT--KRLKGVWLFIIAITIHNFPEGMAVGVS-AFTP 131
Query: 137 TDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGVIFFSFS 196
+ +AIG+Q++PEG AV L ++ K+ L+ L+G+ E I +LG S S
Sbjct: 132 -QALAIAIAIGVQNIPEGAAVMASLIPMKYKKGKAFLITFLTGLVEAIGGLLGAGIVSIS 190
Query: 197 SKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLDTALG 254
+LLPY ++ A GAM+YV E+IPE + KG NEL+ T+ +GF +M LD ALG
Sbjct: 191 QRLLPYMMAFAAGAMIYVVSDEVIPETHSKG---NELLSTWWIMVGFLVMASLDVALG 245
>pir||C83088 hypothetical protein PA4467 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950703|gb|AAG07855.1|AE004860_11
(AE004860) hypothetical protein [Pseudomonas aeruginosa]
Length = 310
Score = 153 bits (384), Expect = 1e-36
Identities = 98/258 (37%), Positives = 137/258 (52%), Gaps = 13/258 (5%)
Query: 5 LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDIS 64
++LA K GL AF T+LG++ L MP+ D L F AGVM+ A+ SLI+PA+ +
Sbjct: 58 IVLALKGGLLCAFGTALGAMPVLVVKTMPARLSDALLGFGAGVMLSATAFSLIMPALSAA 117
Query: 65 SSF--------FPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFA 116
F V G+A+G+ L +L + +P H G EG L A
Sbjct: 118 GDLGYSKFGAGFLVSFGLAVGVMGLFILGRLMPDVH--PGCEGAPLSGGIPPRILLFVTA 175
Query: 117 MIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGV 176
+++HN+PEG+A+GVS + L I +QDVPEG V+L LA + R +L+G
Sbjct: 176 IVLHNIPEGMAVGVSAGAGLDEANGLALGIALQDVPEGLVVALVLAGVGMSRFKAMLVGA 235
Query: 177 LSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIIT 236
SG+ E + VL S+ LLP+GL+ A GAML+V E+IPE + +G T
Sbjct: 236 ASGLVEPLFAVLCAWLVGLSALLLPWGLAAAAGAMLFVVTHEIIPESHRQGHAAE---AT 292
Query: 237 FGFFLGFYLMLFLDTALG 254
G GF LM+ LDTALG
Sbjct: 293 LGLVFGFCLMMVLDTALG 310
>pir||A69162 gufA protein homolog MTH473 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621542|gb|AAB84979.1| (AE000831)
conserved protein [Methanobacterium thermoautotrophicum]
Length = 259
Score = 147 bits (368), Expect = 1e-34
Identities = 101/259 (38%), Positives = 138/259 (52%), Gaps = 23/259 (8%)
Query: 8 AFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSS- 66
AF +F MT G+ L + +D SL FAAG+MI ASF SL++PAI++S +
Sbjct: 10 AFLATIFTWLMTLAGAALVFLPLQGDRKLLDSSLGFAAGIMIAASFWSLLVPAIELSPTG 69
Query: 67 ---FFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAW----LLAFAMII 119
+ P G G L +D+ IPH H EG + W LL A++I
Sbjct: 70 VYAWVPPAAGFLAGGLFLSAMDRIIPHLHPGCDPEG-------LPTTWRRNRLLLLAVVI 122
Query: 120 HNLPEGIAIGVSL-AYSKTDGIITGLA----IGIQDVPEGTAVSLPLATLQKKRLMPILL 174
HNLPEG+AIGV+ A + T G+ LA IGIQ++PEG AVSLPL R +
Sbjct: 123 HNLPEGLAIGVAFGAAASTGGLAAPLALALGIGIQNLPEGAAVSLPLLGEGLSRWRSFIY 182
Query: 175 GVLSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELI 234
G LSGV E++ + G + S ++PY L A GAM++V I+++IPE G N +
Sbjct: 183 GQLSGVIEVLGGIGGALMVYSFSGIMPYALGFAAGAMIFVVIEDLIPECQSGG---NTDL 239
Query: 235 ITFGFFLGFYLMLFLDTAL 253
T +GF LM+ LD AL
Sbjct: 240 ATVSALMGFVLMMVLDLAL 258
>pir||A75447 gufA protein - Deinococcus radiodurans (strain R1)
>gi|6458760|gb|AAF10605.1|AE001954_9 (AE001954) gufA
protein [Deinococcus radiodurans]
Length = 256
Score = 137 bits (341), Expect = 2e-31
Identities = 98/257 (38%), Positives = 131/257 (50%), Gaps = 36/257 (14%)
Query: 13 LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGI 72
+F +T+LG+ LF+ + + ++ + AAGVM+ ASF SL+ PAI
Sbjct: 21 IFTWSLTALGASAVLFTRSVSNRLLNIAQGLAAGVMLAASFWSLLAPAI----------- 69
Query: 73 GIALGIFILVLLDKFIPHEHLVRGY---EGPKEFKDKIKAAW----LLAFAMIIHNLPEG 125
G+ LG + LLDK +PH H + EGP A W LL AM +HN PEG
Sbjct: 70 GLLLGAAFVGLLDKLLPHLHPGFSHGEAEGPP-------ARWSQGALLLAAMTLHNFPEG 122
Query: 126 IAIGVSL--AYSKTDGIITG------LAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVL 177
+A+GVS A + G G L IG+Q++PEG AV+LPL R + G
Sbjct: 123 MAVGVSFGAAGAGAGGATLGGALALALGIGLQNIPEGLAVALPLRAAGLSRRRAFMFGQA 182
Query: 178 SGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITF 237
S + E + LG F S L+PY LS A GAM++V I+E+IPE G N I T
Sbjct: 183 SALVEPVGGWLGAAFVGTSLPLMPYALSFAAGAMIFVVIEELIPEAQRGG---NADIATQ 239
Query: 238 GFFLGFYLMLFLDTALG 254
LGF M+ LD ALG
Sbjct: 240 ATLLGFVAMMILDVALG 256
>sp|Q06916|GUFA_MYXXA GUFA PROTEIN >gi|628449|pir||S39876 gufA protein - Myxococcus
xanthus >gi|49253|emb|CAA50385.1| (X71062) orfX
[Myxococcus xanthus] >gi|861060|emb|CAA50380.1| (X71062)
gufA [Myxococcus xanthus]
Length = 254
Score = 133 bits (331), Expect = 2e-30
Identities = 89/251 (35%), Positives = 125/251 (49%), Gaps = 14/251 (5%)
Query: 13 LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDI--------S 64
L T LG+L L + + + G SL++PA+++
Sbjct: 9 LLAGTATGLGALPVLVTSELSRKAQGPDVGLQRGRDAGGQSFSLVIPAMELVRGQGHDGP 68
Query: 65 SSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPE 124
S+ V G+ LG L + +PHEH ++G+EG K +A L AM +HN PE
Sbjct: 69 SAALRVAAGVLLGGLFLRVWHDLMPHEHALKGHEG--HGGTKWNSALLFVLAMTLHNFPE 126
Query: 125 GIAIGVSLAYSKTD-GIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEM 183
G+A+GVS A + + G+ L IG Q++PEG V+L L L +L+G+ E
Sbjct: 127 GLAVGVSFAAPQPELGLSVALGIGAQNIPEGLVVALALRASGASASRAAFLALLTGMVEP 186
Query: 184 IMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGF 243
+ + GV+ S SS LLP+GL+ AGGAMLYV EMIPE + G E T G GF
Sbjct: 187 VGALFGVLALSLSSALLPWGLAFAGGAMLYVISHEMIPESHRGGFERE---ATTGLMWGF 243
Query: 244 YLMLFLDTALG 254
L L LD +LG
Sbjct: 244 VLALVLDMSLG 254
>pir||C70127 gufA protein homolog - Lyme disease spirochete
>gi|2688111|gb|AAC66605.1| (AE001132) gufA protein
[Borrelia burgdorferi]
Length = 273
Score = 133 bits (331), Expect = 2e-30
Identities = 81/254 (31%), Positives = 140/254 (54%), Gaps = 17/254 (6%)
Query: 14 FVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISS-----SFF 68
F F T+ G+ F ++ + +D L F+AG+MI ASF SLI PAI+ + ++
Sbjct: 24 FTWFTTAFGAAAVFFFRKVDNKIMDAMLGFSAGIMIAASFFSLIQPAIERAEELGYITWV 83
Query: 69 PVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAI 128
P G +G F + ++D F+P + + ++ K +LL A+ +HN PEG+A+
Sbjct: 84 PAVFGFLVGAFFIYIVDVFVPDLDKLTFID--EDLTKHGKKDFLLFTAVTLHNFPEGLAV 141
Query: 129 GVSLAYSKTD--------GIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
GV+ ++ ++ L IGIQ++PEG A+SLPL G +SG+
Sbjct: 142 GVAFGALASNPDIQTLVGAMLLTLGIGIQNIPEGAAISLPLRRGNVALAKCFNYGQMSGL 201
Query: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240
E++ ++G +++LP+ L+ + GAM+YV+I+++IPE K K+++ + +
Sbjct: 202 VEIVGGLMGAYAVYSFTRILPFALAFSAGAMIYVSIEQLIPE--AKRKDIDNKVPSIFGV 259
Query: 241 LGFYLMLFLDTALG 254
+GF LM+FLD +LG
Sbjct: 260 IGFTLMMFLDVSLG 273
>pir||T29905 hypothetical protein F59A3.4 - Caenorhabditis elegans
>gi|1707057|gb|AAB37816.1| (U80448) coded for by C.
elegans cDNA CEESS55F; coded for by C. elegans cDNA
yk84a1.3; coded for by C. elegans cDNA yk78g7.3; coded
for by C. elegans cDNA yk168g9.5; coded for by C.
elegans cDNA yk78g7.5; coded for by C. elegans cDNA
yk84a1.5; strong s>
Length = 321
Score = 115 bits (286), Expect = 4e-25
Identities = 88/304 (28%), Positives = 128/304 (41%), Gaps = 70/304 (23%)
Query: 18 MTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSS------FFPV- 70
+T+LG+ L +D SL FAAGVM ASF SL+ PAI+I+ + F PV
Sbjct: 21 VTALGASLVFIMRHQSKKLLDISLGFAAGVMTAASFWSLLAPAIEIAEADFEKWAFVPVA 80
Query: 71 -GIGIALGIFILV----------------------------------------LLDKFIP 89
G + G L L + +
Sbjct: 81 IGFAVGAGFVHLADTLLPSCVGDAGMTSLLSPPTRRSETEMSLMQAREDLDVAALARSVN 140
Query: 90 HEHLVRGYE------------GPKEFKDKIKAAWLLAFAMIIHNLPEGIAIGVSLAYSKT 137
EH R ++++ + LL A+ +HN+PEG+A+GV +
Sbjct: 141 EEHRERDRSVDMGSDKRPDVIPEEDYRQSWRRILLLILAVTVHNIPEGLAVGVGFGSAGK 200
Query: 138 DGIIT-------GLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGV 190
T + IG+Q+ PEG AVSLPLA +L G LSG+ E I + G
Sbjct: 201 TKQATFESAFNLAIGIGLQNFPEGLAVSLPLAAFGHSKLKAFWYGQLSGMVEPIAALFGA 260
Query: 191 IFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLD 250
F +LPY L+ A GAM+YV + ++IPE G N + + G +GF +M+ +D
Sbjct: 261 AAVIFMEPVLPYALAFAAGAMIYVVVDDIIPEAQRNG---NGKLASLGCIIGFLVMMCMD 317
Query: 251 TALG 254
LG
Sbjct: 318 VGLG 321
>pir||F81444 probable integral membrane protein Cj0263 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967740|emb|CAB72731.1| (AL139074) putative integral
membrane protein [Campylobacter jejuni]
Length = 291
Score = 97.9 bits (240), Expect = 1e-19
Identities = 88/293 (30%), Positives = 135/293 (46%), Gaps = 49/293 (16%)
Query: 3 ETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAI- 61
E + +A L LF F T++GS++A FS + + L F+AGVMI SF ++ A+
Sbjct: 6 EQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGLGFSAGVMIYISFMEILPTALK 65
Query: 62 ---DISSSFFPVGIGIAL---GIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWL--- 112
+ S + +G+A GI I +L+DK IP + V +E PKE ++K L
Sbjct: 66 DFKNHYDSHWAELLGLACFFGGILISLLIDKLIPED--VNPHE-PKEDLSELKICPLPQK 122
Query: 113 ---------------------------LAFAMIIHNLPEGIAIGVSLAYSKTDGIITGLA 145
A A+ IHN PEG A +S + T GI +A
Sbjct: 123 GQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFPEGFATFISSLDNLTLGIAIAIA 182
Query: 146 IGIQDVPEGTAVSLPL--ATLQKKRLMPILLGVLSGVAEMIMVVLG-VIFFSFSSKL-LP 201
+ I ++PEG AVSLP+ AT KK+ + LSG AE + +G +I F L L
Sbjct: 183 VAIHNIPEGLAVSLPIYHATGDKKK--AFIYSALSGFAEPLGAFVGALILLPFIGDLTLA 240
Query: 202 YGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLDTALG 254
++ G M+++++ E++P K + L +G G +M LG
Sbjct: 241 ISFAVIAGIMVFISLDELLPAAKTYDKAHDSL---YGLIAGMAIMALSLNLLG 290
>pir||G81230 conserved hypothetical protein NMB0175 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225393|gb|AAF40632.1| (AE002374) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 269
Score = 89.7 bits (219), Expect = 3e-17
Identities = 67/259 (25%), Positives = 115/259 (43%), Gaps = 15/259 (5%)
Query: 5 LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA---- 60
L +AF + L T LGS L +FS + F LAFA G M+ S T + +
Sbjct: 9 LAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFGLAFAGGAMVYVSLTEIFSKSSEAF 68
Query: 61 ---IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDK----IKAAWLL 113
D +F + G+ + L+D+ +P+ H + P + K + +
Sbjct: 69 AEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNPHETLDAQDPSFQESKRRHIARVGMMA 128
Query: 114 AFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPIL 173
AFA+ HN PEG+A + + G+ LAI I ++PEG +++ P+ + R +
Sbjct: 129 AFAITAHNFPEGLATFFATLENPAVGMPLALAIAIHNIPEGISIAAPVYFATRSRKKTVW 188
Query: 174 LGVLSGVAEMIMVVLGVIFFS--FSSKLLPYGLSMAGGAMLYVTIKEMIP--EIYMKGKE 229
+LSG+AE + LG + S + + G M+++ + E++P + Y G E
Sbjct: 189 ACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIAGVMVFLALDELLPAAKRYSDGHE 248
Query: 230 VNELIITFGFFLGFYLMLF 248
+ T + L+LF
Sbjct: 249 TVYGLTTGMAVIAVSLVLF 267
>gb|AAG19368.1| (AE005031) GufA protein; GufA [Halobacterium sp. NRC-1]
Length = 266
Score = 89.3 bits (218), Expect = 4e-17
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 35/241 (14%)
Query: 3 ETLILAFKLGLFVAFMTSLGSLLALFSH------RMPSWGVDFSLAFAAGVMIVASFTSL 56
E L + F GL T LG+L F R+ WG+ A+G+M+ AS L
Sbjct: 6 ELLFVVFA-GLLTDLATGLGALPFFFVDDIDDRWRVGLWGL------ASGIMVSASGFGL 58
Query: 57 ILPAIDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYE-GPKEFKDK-IKAAWLLA 114
A++ + G G+ ++V+ EH++ +E P++ +K L+A
Sbjct: 59 FREALNYGGPT-EIAAGALAGVALVVVA------EHVIDDHEFEPRDIAAADVKKLALIA 111
Query: 115 FAMIIHNLPEGIAIGVSLAYSKTDG-------------IITGLAIGIQDVPEGTAVSLPL 161
+ +H+ PEG+A+GVS A DG + +AI I +VPEG AVS+PL
Sbjct: 112 GVLTVHSFPEGVAVGVSFADMGIDGGLSVLGFSIPILAVFMTIAISIHNVPEGLAVSIPL 171
Query: 162 ATLQKKRLMPILLGVLSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
+R + + V + + + I + +F + LP+G AGGAM+++ + E IP
Sbjct: 172 HEHGARRWTLVGVAVFTSIPQPIGAGIAYVFVQIARAALPFGYGFAGGAMVFLVLSEFIP 231
Query: 222 E 222
E
Sbjct: 232 E 232
>pir||D82001 probable integral membrane protein NMA0093 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7378866|emb|CAB83409.1| (AL162752) putative integral
membrane protein [Neisseria meningitidis Z2491]
Length = 269
Score = 88.9 bits (217), Expect = 5e-17
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Query: 5 LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA---- 60
L +AF + L T LGS L +FS + F LAFA G M+ S T + +
Sbjct: 9 LAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFGLAFAGGAMVYVSLTEIFSKSSEAF 68
Query: 61 ---IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDK----IKAAWLL 113
D +F + G+ + L+D+ +P+ H + P + K + +
Sbjct: 69 AEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNPHETLDAQDPSFQESKRRHIARVGMMA 128
Query: 114 AFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPIL 173
AFA+ HN PEG+A + + G+ LAI I ++PEG +++ P+ + R +
Sbjct: 129 AFAITAHNFPEGLATFFATLENPAVGMPLALAIAIHNIPEGISIAAPVYFATRSRKKTVW 188
Query: 174 LGVLSGVAEMIMVVLGVIFFS--FSSKLLPYGLSMAGGAMLYVTIKEMIP 221
+LSG+AE + LG + S + + G M+++ + E++P
Sbjct: 189 ACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIAGVMVFLALDELLP 238
>sp|P24198|YGIE_ECOLI HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB INTERGENIC REGION (ORFB)
(O265) >gi|96076|pir||S22363 gufA protein homolog -
Escherichia coli >gi|146680|gb|AAA71878.1| (M77129) ORFB
[Escherichia coli] >gi|1789419|gb|AAC76076.1| (AE000386)
orf, hypothetical protein [Escherichia coli K12]
Length = 257
Score = 80.8 bits (196), Expect = 2e-14
Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 11 LGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPV 70
L + T +G+ L + + + + FSL FAAG+M++ S + LPA + PV
Sbjct: 7 LTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEM-LPAALAAEGMSPV 65
Query: 71 GIGIALGIFILVLL-----DKFIPHEH----LVRGYEG-PKEFKDKIKAAWLLAFAMIIH 120
+ G+FI LL D+ +PH H + + + PK K + A LL + +H
Sbjct: 66 ---LGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIK---RTAILLTLGISLH 119
Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
N PEGIA V+ + + G LA+ + ++PEG AV+ P+ + IL +SG+
Sbjct: 120 NFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGL 179
Query: 181 AEMIMVVLG--VIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
AE++ VL ++ S ++ ++ G M+ +++ E++P
Sbjct: 180 AEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMP 222
>gb|AAA69208.1| (U28377) ORF_o265; alternate name ygiE; orfB of M77129 [Escherichia
coli]
Length = 265
Score = 80.8 bits (196), Expect = 2e-14
Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 19/223 (8%)
Query: 11 LGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPV 70
L + T +G+ L + + + + FSL FAAG+M++ S + LPA + PV
Sbjct: 15 LTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEM-LPAALAAEGMSPV 73
Query: 71 GIGIALGIFILVLL-----DKFIPHEH----LVRGYEG-PKEFKDKIKAAWLLAFAMIIH 120
+ G+FI LL D+ +PH H + + + PK K + A LL + +H
Sbjct: 74 ---LGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIK---RTAILLTLGISLH 127
Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
N PEGIA V+ + + G LA+ + ++PEG AV+ P+ + IL +SG+
Sbjct: 128 NFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGL 187
Query: 181 AEMIMVVLG--VIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
AE++ VL ++ S ++ ++ G M+ +++ E++P
Sbjct: 188 AEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMP 230
>dbj|BAB02495.1| (AB025629) gene_id:MOE17.18~unknown protein [Arabidopsis thaliana]
Length = 374
Score = 74.5 bits (180), Expect = 1e-12
Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 29/223 (13%)
Query: 39 FSLAFAAGVMIVASFTSLILPAIDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYE 98
F FA+G+M+ SF L AI+ S FF + G E
Sbjct: 145 FLQGFASGLMLSISFLDLAHNAIN-SIGFFKANLW--------------------KNGDE 183
Query: 99 GPKEFKDK-----IKAAWLLAFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPE 153
G K+ K + + + A + +HN PEG+A+ + G+ LAI + ++PE
Sbjct: 184 GGKDMMKKHRKQVLYSGLITAIGISLHNFPEGMAVFLGSIKGMRVGVNLALAIALHNIPE 243
Query: 154 GTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGVIFF--SFSSKLLPYGLSMAGGAM 211
G AV+LP+ + + L LSG+AE + V++ F S S ++L L GG M
Sbjct: 244 GVAVALPIYFATESKWQAFKLATLSGLAEPLGVIIVAYLFPRSLSPEILEGLLGAVGGIM 303
Query: 212 LYVTIKEMIPEIY-MKGKEVNELIITFGFFLGFYLMLFLDTAL 253
++T+ EM+P + G++ + FG + FL+ +L
Sbjct: 304 AFLTLHEMLPLAFDYAGQKQAVKAVFFGMACMSASLYFLELSL 346
>gb|AAF26056.1|AC012562_11 (AC012562) unknown protein; 37802-35617 [Arabidopsis thaliana]
Length = 595
Score = 74.1 bits (179), Expect = 2e-12
Identities = 61/218 (27%), Positives = 107/218 (48%), Gaps = 16/218 (7%)
Query: 13 LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGI 72
L +A T LG++ F P W AAGVM+ ASF + S ++ GI
Sbjct: 83 LAMAAATGLGAVPFFFVELDPQWA-GICNGMAAGVMLAASFDLVKEGQEHGSGNWVVTGI 141
Query: 73 GIALGIFILV---LLDKFIPHEHL-VRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAI 128
+A +FI + +L+++ L ++G + K L+ M +H+ EG +
Sbjct: 142 -LAGALFIWLCKQILEQYGEVSMLDIKGADATKVV--------LVIGIMTLHSFGEGSGV 192
Query: 129 GVSLAYSK--TDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMV 186
GVS A SK + G++ LAI + ++PEG AVS+ LA+ +L +++ + + ++
Sbjct: 193 GVSFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLWSIITSLPQPLVA 252
Query: 187 VLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIY 224
V + SK LP+ A G M+++ I E++P+ +
Sbjct: 253 VPAFLCADAFSKFLPFCTGFAAGCMIWMVIAEVLPDAF 290
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.146 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85547738
Number of Sequences: 2977
Number of extensions: 3439053
Number of successful extensions: 12350
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12265
Number of HSP's gapped (non-prelim): 28
length of query: 254
length of database: 189,106,746
effective HSP length: 52
effective length of query: 202
effective length of database: 157,985,422
effective search space: 31913055244
effective search space used: 31913055244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)