BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1443 (PAB1443) DE:SIMILARITY TO MYXOCOCCUS XANTHUS GUFA
PROTEIN
         (254 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75052 gufA protein homolog PAB1443 - Pyrococcus abyssi (st...   495  e-139
pir||H71107 gufA protein homolog - Pyrococcus horikoshii >gi|325...   352  3e-96
pir||D70456 gufA protein homolog aq_1814 - Aquifex aeolicus >gi|...   210  2e-53
pir||G72550 probable gufA protein APE1691 - Aeropyrum pernix (st...   208  4e-53
pir||A72218 gufA protein - Thermotoga maritima (strain MSB8) >gi...   169  4e-41
pir||C83088 hypothetical protein PA4467 [imported] - Pseudomonas...   153  1e-36
pir||A69162 gufA protein homolog MTH473 - Methanobacterium therm...   147  1e-34
pir||A75447 gufA protein - Deinococcus radiodurans (strain R1) >...   137  2e-31
sp|Q06916|GUFA_MYXXA GUFA PROTEIN >gi|628449|pir||S39876 gufA pr...   133  2e-30
pir||C70127 gufA protein homolog - Lyme disease spirochete >gi|2...   133  2e-30
pir||T29905 hypothetical protein F59A3.4 - Caenorhabditis elegan...   115  4e-25
pir||F81444 probable integral membrane protein Cj0263 [imported]...    98  1e-19
pir||G81230 conserved hypothetical protein NMB0175 [imported] - ...    90  3e-17
gb|AAG19368.1| (AE005031) GufA protein; GufA [Halobacterium sp. ...    89  4e-17
pir||D82001 probable integral membrane protein NMA0093 [imported...    89  5e-17
sp|P24198|YGIE_ECOLI HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB I...    81  2e-14
gb|AAA69208.1| (U28377) ORF_o265; alternate name ygiE; orfB of M...    81  2e-14
dbj|BAB02495.1| (AB025629) gene_id:MOE17.18~unknown protein [Ara...    75  1e-12
gb|AAF26056.1|AC012562_11 (AC012562) unknown protein; 37802-3561...    74  2e-12

>pir||E75052 gufA protein homolog PAB1443 - Pyrococcus abyssi (strain Orsay)
           >gi|5458827|emb|CAB50314.1| (AJ248287) SIMILARITY TO
           MYXOCOCCUS XANTHUS GUFA PROTEIN [Pyrococcus abyssi]
           Length = 254
           
 Score =  495 bits (1261), Expect = e-139
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA 60
           MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA
Sbjct: 1   MNETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA 60

Query: 61  IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH 120
           IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH
Sbjct: 61  IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIH 120

Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
           NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV
Sbjct: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180

Query: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240
           AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF
Sbjct: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240

Query: 241 LGFYLMLFLDTALG 254
           LGFYLMLFLDTALG
Sbjct: 241 LGFYLMLFLDTALG 254


>pir||H71107 gufA protein homolog - Pyrococcus horikoshii
           >gi|3257039|dbj|BAA29722.1| (AP000003) 269aa long
           hypothetical Gufa protein [Pyrococcus horikoshii]
           Length = 269
           
 Score =  352 bits (893), Expect = 3e-96
 Identities = 163/250 (65%), Positives = 208/250 (83%), Gaps = 2/250 (0%)

Query: 5   LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDIS 64
           +I+A   G+FVA MT+LG+L+A+F++RMP WG+D SL+FAAGVMIVASFTSLILPAID++
Sbjct: 22  IIVAVYAGIFVALMTTLGALIAIFANRMPDWGMDVSLSFAAGVMIVASFTSLILPAIDLT 81

Query: 65  SSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPE 124
            SF P GIGI LG+ ++  +D FIPHEH+++GYEGPKEFK+K+K  WL+  A+IIHNLPE
Sbjct: 82  GSFTPAGIGIFLGVLLIYGIDNFIPHEHIIKGYEGPKEFKEKLKLVWLVVLAVIIHNLPE 141

Query: 125 GIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMI 184
           G+A+G+S+ Y+   G++T +AIGIQD PEGT VSLPLAT+QKKRL+PILLG LSG+AEM+
Sbjct: 142 GLAVGISIVYNLNAGLVTAIAIGIQDFPEGTVVSLPLATIQKKRLVPILLGALSGIAEMV 201

Query: 185 MVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFY 244
           MV+LG   FS     LPYGL +AGGAMLYVT+KEMIPEIY   ++ NE ++T GFFLGFY
Sbjct: 202 MVILGAFLFSIFKSFLPYGLGLAGGAMLYVTVKEMIPEIYK--RQENEKLVTLGFFLGFY 259

Query: 245 LMLFLDTALG 254
           +MLFLD+ LG
Sbjct: 260 VMLFLDSMLG 269


>pir||D70456 gufA protein homolog aq_1814 - Aquifex aeolicus
           >gi|2984109|gb|AAC07647.1| (AE000757) hypothetical
           protein [Aquifex aeolicus]
           Length = 243
           
 Score =  210 bits (528), Expect = 2e-53
 Identities = 119/249 (47%), Positives = 155/249 (61%), Gaps = 11/249 (4%)

Query: 3   ETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAID 62
           E L++A  L L     T LGS L+LF     S  V  SLAFAAGVM+VASFTSLILP I+
Sbjct: 2   EILLIASLLSLG----TFLGSFLSLFFR---SVNVGVSLAFAAGVMLVASFTSLILPGIE 54

Query: 63  ISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNL 122
           I   F+    GI LG F+++L++   PHEH+V+G EG  + K+ +    L+   + IHN+
Sbjct: 55  IGG-FWKTATGIVLGFFLMMLVEVLSPHEHVVKGKEGLIK-KESLNRLILIVIGITIHNV 112

Query: 123 PEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAE 182
           PEGI++GV+ ++S   G    +AI +QD+PEG  VSLPL  + K  L+P+++G LSG  E
Sbjct: 113 PEGISVGVATSHSWNTGFPLAIAIAVQDIPEGLVVSLPLMVMMKSTLIPLIIGFLSGFIE 172

Query: 183 MIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLG 242
            I  V G         LLPYGL   GGAMLYVT+KE +PEIY  G+   E  IT  F  G
Sbjct: 173 SIFAVFGYYLMETFKNLLPYGLGFGGGAMLYVTVKEALPEIYASGE--RETKITLSFLTG 230

Query: 243 FYLMLFLDT 251
           F LMLFLD+
Sbjct: 231 FLLMLFLDS 239


>pir||G72550 probable gufA protein APE1691 - Aeropyrum pernix (strain K1)
           >gi|5105379|dbj|BAA80692.1| (AP000062) 269aa long
           hypothetical gufA protein [Aeropyrum pernix]
           Length = 269
           
 Score =  208 bits (525), Expect = 4e-53
 Identities = 110/251 (43%), Positives = 161/251 (63%), Gaps = 9/251 (3%)

Query: 8   AFKLGLFVAFMTSLGSLLALFSH----RMPSWGVDFSLAFAAGVMIVASFTSLILPAIDI 63
           AF L L+   MTSLG  L L +     R+    +D  + F++G+MIVASFTSL+LPA++I
Sbjct: 24  AFLLSLYAFAMTSLGGFLVLAARTHGGRLDVL-LDVGMGFSSGIMIVASFTSLLLPALEI 82

Query: 64  SSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLP 123
           S     + I   +G   + ++++ +PHEHL++GYEGP  F+ K+KAAWL+A A+IIHNLP
Sbjct: 83  SGPGIVI-ISFIVGAIAVYIINEILPHEHLIKGYEGPPSFRRKVKAAWLVATAIIIHNLP 141

Query: 124 EGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEM 183
           EG++IG + +Y+ ++G+   LAIG QD PEG AVSLP+        + +L+ +LSG +E+
Sbjct: 142 EGMSIGAAASYAISEGLAVALAIGTQDFPEGLAVSLPVFAASGSLYLALLVAMLSGFSEV 201

Query: 184 IMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGF 243
           +   +      +S  LL   L+ A GAM++V   E +PE +  G   NE + T GFF GF
Sbjct: 202 VAATIVAALIGYSPGLLASALAFAAGAMVFVVSYEALPESHRSG---NEKLATVGFFAGF 258

Query: 244 YLMLFLDTALG 254
            +ML+LDTALG
Sbjct: 259 IIMLYLDTALG 269


>pir||A72218 gufA protein - Thermotoga maritima (strain MSB8)
           >gi|4982315|gb|AAD36803.1|AE001812_13 (AE001812) gufA
           protein [Thermotoga maritima]
           Length = 245
           
 Score =  169 bits (423), Expect = 4e-41
 Identities = 101/238 (42%), Positives = 142/238 (59%), Gaps = 10/238 (4%)

Query: 19  TSLGSLLALF--SHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGIGIAL 76
           TSLG+L  LF   H      +D  L FAAGVM+ AS  SL+ P++++        IG  L
Sbjct: 16  TSLGALPFLFLKPHHTSDKVIDSFLGFAAGVMLAASAFSLVAPSLEMGG-IVRFLIGFVL 74

Query: 77  GIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAIGVSLAYSK 136
           G   + L DK IPHEHL++G+EGP     ++K  WL   A+ IHN PEG+A+GVS A++ 
Sbjct: 75  GGLFVNLADKLIPHEHLLKGHEGPDT--KRLKGVWLFIIAITIHNFPEGMAVGVS-AFTP 131

Query: 137 TDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGVIFFSFS 196
              +   +AIG+Q++PEG AV   L  ++ K+    L+  L+G+ E I  +LG    S S
Sbjct: 132 -QALAIAIAIGVQNIPEGAAVMASLIPMKYKKGKAFLITFLTGLVEAIGGLLGAGIVSIS 190

Query: 197 SKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLDTALG 254
            +LLPY ++ A GAM+YV   E+IPE + KG   NEL+ T+   +GF +M  LD ALG
Sbjct: 191 QRLLPYMMAFAAGAMIYVVSDEVIPETHSKG---NELLSTWWIMVGFLVMASLDVALG 245


>pir||C83088 hypothetical protein PA4467 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9950703|gb|AAG07855.1|AE004860_11
           (AE004860) hypothetical protein [Pseudomonas aeruginosa]
           Length = 310
           
 Score =  153 bits (384), Expect = 1e-36
 Identities = 98/258 (37%), Positives = 137/258 (52%), Gaps = 13/258 (5%)

Query: 5   LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDIS 64
           ++LA K GL  AF T+LG++  L    MP+   D  L F AGVM+ A+  SLI+PA+  +
Sbjct: 58  IVLALKGGLLCAFGTALGAMPVLVVKTMPARLSDALLGFGAGVMLSATAFSLIMPALSAA 117

Query: 65  SSF--------FPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFA 116
                      F V  G+A+G+  L +L + +P  H   G EG            L   A
Sbjct: 118 GDLGYSKFGAGFLVSFGLAVGVMGLFILGRLMPDVH--PGCEGAPLSGGIPPRILLFVTA 175

Query: 117 MIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGV 176
           +++HN+PEG+A+GVS      +     L I +QDVPEG  V+L LA +   R   +L+G 
Sbjct: 176 IVLHNIPEGMAVGVSAGAGLDEANGLALGIALQDVPEGLVVALVLAGVGMSRFKAMLVGA 235

Query: 177 LSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIIT 236
            SG+ E +  VL       S+ LLP+GL+ A GAML+V   E+IPE + +G        T
Sbjct: 236 ASGLVEPLFAVLCAWLVGLSALLLPWGLAAAAGAMLFVVTHEIIPESHRQGHAAE---AT 292

Query: 237 FGFFLGFYLMLFLDTALG 254
            G   GF LM+ LDTALG
Sbjct: 293 LGLVFGFCLMMVLDTALG 310


>pir||A69162 gufA protein homolog MTH473 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2621542|gb|AAB84979.1| (AE000831)
           conserved protein [Methanobacterium thermoautotrophicum]
           Length = 259
           
 Score =  147 bits (368), Expect = 1e-34
 Identities = 101/259 (38%), Positives = 138/259 (52%), Gaps = 23/259 (8%)

Query: 8   AFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSS- 66
           AF   +F   MT  G+ L     +     +D SL FAAG+MI ASF SL++PAI++S + 
Sbjct: 10  AFLATIFTWLMTLAGAALVFLPLQGDRKLLDSSLGFAAGIMIAASFWSLLVPAIELSPTG 69

Query: 67  ---FFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAW----LLAFAMII 119
              + P   G   G   L  +D+ IPH H     EG       +   W    LL  A++I
Sbjct: 70  VYAWVPPAAGFLAGGLFLSAMDRIIPHLHPGCDPEG-------LPTTWRRNRLLLLAVVI 122

Query: 120 HNLPEGIAIGVSL-AYSKTDGIITGLA----IGIQDVPEGTAVSLPLATLQKKRLMPILL 174
           HNLPEG+AIGV+  A + T G+   LA    IGIQ++PEG AVSLPL      R    + 
Sbjct: 123 HNLPEGLAIGVAFGAAASTGGLAAPLALALGIGIQNLPEGAAVSLPLLGEGLSRWRSFIY 182

Query: 175 GVLSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELI 234
           G LSGV E++  + G +     S ++PY L  A GAM++V I+++IPE    G   N  +
Sbjct: 183 GQLSGVIEVLGGIGGALMVYSFSGIMPYALGFAAGAMIFVVIEDLIPECQSGG---NTDL 239

Query: 235 ITFGFFLGFYLMLFLDTAL 253
            T    +GF LM+ LD AL
Sbjct: 240 ATVSALMGFVLMMVLDLAL 258


>pir||A75447 gufA protein - Deinococcus radiodurans (strain R1)
           >gi|6458760|gb|AAF10605.1|AE001954_9 (AE001954) gufA
           protein [Deinococcus radiodurans]
           Length = 256
           
 Score =  137 bits (341), Expect = 2e-31
 Identities = 98/257 (38%), Positives = 131/257 (50%), Gaps = 36/257 (14%)

Query: 13  LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGI 72
           +F   +T+LG+   LF+  + +  ++ +   AAGVM+ ASF SL+ PAI           
Sbjct: 21  IFTWSLTALGASAVLFTRSVSNRLLNIAQGLAAGVMLAASFWSLLAPAI----------- 69

Query: 73  GIALGIFILVLLDKFIPHEHLVRGY---EGPKEFKDKIKAAW----LLAFAMIIHNLPEG 125
           G+ LG   + LLDK +PH H    +   EGP        A W    LL  AM +HN PEG
Sbjct: 70  GLLLGAAFVGLLDKLLPHLHPGFSHGEAEGPP-------ARWSQGALLLAAMTLHNFPEG 122

Query: 126 IAIGVSL--AYSKTDGIITG------LAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVL 177
           +A+GVS   A +   G   G      L IG+Q++PEG AV+LPL      R    + G  
Sbjct: 123 MAVGVSFGAAGAGAGGATLGGALALALGIGLQNIPEGLAVALPLRAAGLSRRRAFMFGQA 182

Query: 178 SGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITF 237
           S + E +   LG  F   S  L+PY LS A GAM++V I+E+IPE    G   N  I T 
Sbjct: 183 SALVEPVGGWLGAAFVGTSLPLMPYALSFAAGAMIFVVIEELIPEAQRGG---NADIATQ 239

Query: 238 GFFLGFYLMLFLDTALG 254
              LGF  M+ LD ALG
Sbjct: 240 ATLLGFVAMMILDVALG 256


>sp|Q06916|GUFA_MYXXA GUFA PROTEIN >gi|628449|pir||S39876 gufA protein - Myxococcus
           xanthus >gi|49253|emb|CAA50385.1| (X71062) orfX
           [Myxococcus xanthus] >gi|861060|emb|CAA50380.1| (X71062)
           gufA [Myxococcus xanthus]
           Length = 254
           
 Score =  133 bits (331), Expect = 2e-30
 Identities = 89/251 (35%), Positives = 125/251 (49%), Gaps = 14/251 (5%)

Query: 13  LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDI--------S 64
           L     T LG+L  L +  +        +    G        SL++PA+++         
Sbjct: 9   LLAGTATGLGALPVLVTSELSRKAQGPDVGLQRGRDAGGQSFSLVIPAMELVRGQGHDGP 68

Query: 65  SSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPE 124
           S+   V  G+ LG   L +    +PHEH ++G+EG      K  +A L   AM +HN PE
Sbjct: 69  SAALRVAAGVLLGGLFLRVWHDLMPHEHALKGHEG--HGGTKWNSALLFVLAMTLHNFPE 126

Query: 125 GIAIGVSLAYSKTD-GIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEM 183
           G+A+GVS A  + + G+   L IG Q++PEG  V+L L            L +L+G+ E 
Sbjct: 127 GLAVGVSFAAPQPELGLSVALGIGAQNIPEGLVVALALRASGASASRAAFLALLTGMVEP 186

Query: 184 IMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGF 243
           +  + GV+  S SS LLP+GL+ AGGAMLYV   EMIPE +  G E      T G   GF
Sbjct: 187 VGALFGVLALSLSSALLPWGLAFAGGAMLYVISHEMIPESHRGGFERE---ATTGLMWGF 243

Query: 244 YLMLFLDTALG 254
            L L LD +LG
Sbjct: 244 VLALVLDMSLG 254


>pir||C70127 gufA protein homolog - Lyme disease spirochete
           >gi|2688111|gb|AAC66605.1| (AE001132) gufA protein
           [Borrelia burgdorferi]
           Length = 273
           
 Score =  133 bits (331), Expect = 2e-30
 Identities = 81/254 (31%), Positives = 140/254 (54%), Gaps = 17/254 (6%)

Query: 14  FVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISS-----SFF 68
           F  F T+ G+    F  ++ +  +D  L F+AG+MI ASF SLI PAI+ +      ++ 
Sbjct: 24  FTWFTTAFGAAAVFFFRKVDNKIMDAMLGFSAGIMIAASFFSLIQPAIERAEELGYITWV 83

Query: 69  PVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAI 128
           P   G  +G F + ++D F+P    +   +  ++     K  +LL  A+ +HN PEG+A+
Sbjct: 84  PAVFGFLVGAFFIYIVDVFVPDLDKLTFID--EDLTKHGKKDFLLFTAVTLHNFPEGLAV 141

Query: 129 GVSLAYSKTD--------GIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
           GV+     ++         ++  L IGIQ++PEG A+SLPL             G +SG+
Sbjct: 142 GVAFGALASNPDIQTLVGAMLLTLGIGIQNIPEGAAISLPLRRGNVALAKCFNYGQMSGL 201

Query: 181 AEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFF 240
            E++  ++G       +++LP+ L+ + GAM+YV+I+++IPE   K K+++  + +    
Sbjct: 202 VEIVGGLMGAYAVYSFTRILPFALAFSAGAMIYVSIEQLIPE--AKRKDIDNKVPSIFGV 259

Query: 241 LGFYLMLFLDTALG 254
           +GF LM+FLD +LG
Sbjct: 260 IGFTLMMFLDVSLG 273


>pir||T29905 hypothetical protein F59A3.4 - Caenorhabditis elegans
           >gi|1707057|gb|AAB37816.1| (U80448) coded for by C.
           elegans cDNA CEESS55F; coded for by C. elegans cDNA
           yk84a1.3; coded for by C. elegans cDNA yk78g7.3; coded
           for by C. elegans cDNA yk168g9.5; coded for by C.
           elegans cDNA yk78g7.5; coded for by C. elegans cDNA
           yk84a1.5; strong s>
           Length = 321
           
 Score =  115 bits (286), Expect = 4e-25
 Identities = 88/304 (28%), Positives = 128/304 (41%), Gaps = 70/304 (23%)

Query: 18  MTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSS------FFPV- 70
           +T+LG+ L           +D SL FAAGVM  ASF SL+ PAI+I+ +      F PV 
Sbjct: 21  VTALGASLVFIMRHQSKKLLDISLGFAAGVMTAASFWSLLAPAIEIAEADFEKWAFVPVA 80

Query: 71  -GIGIALGIFILV----------------------------------------LLDKFIP 89
            G  +  G   L                                          L + + 
Sbjct: 81  IGFAVGAGFVHLADTLLPSCVGDAGMTSLLSPPTRRSETEMSLMQAREDLDVAALARSVN 140

Query: 90  HEHLVRGYE------------GPKEFKDKIKAAWLLAFAMIIHNLPEGIAIGVSLAYSKT 137
            EH  R                 ++++   +   LL  A+ +HN+PEG+A+GV    +  
Sbjct: 141 EEHRERDRSVDMGSDKRPDVIPEEDYRQSWRRILLLILAVTVHNIPEGLAVGVGFGSAGK 200

Query: 138 DGIIT-------GLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGV 190
               T        + IG+Q+ PEG AVSLPLA     +L     G LSG+ E I  + G 
Sbjct: 201 TKQATFESAFNLAIGIGLQNFPEGLAVSLPLAAFGHSKLKAFWYGQLSGMVEPIAALFGA 260

Query: 191 IFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLD 250
               F   +LPY L+ A GAM+YV + ++IPE    G   N  + + G  +GF +M+ +D
Sbjct: 261 AAVIFMEPVLPYALAFAAGAMIYVVVDDIIPEAQRNG---NGKLASLGCIIGFLVMMCMD 317

Query: 251 TALG 254
             LG
Sbjct: 318 VGLG 321


>pir||F81444 probable integral membrane protein Cj0263 [imported] -
           Campylobacter jejuni (strain NCTC 11168)
           >gi|6967740|emb|CAB72731.1| (AL139074) putative integral
           membrane protein [Campylobacter jejuni]
           Length = 291
           
 Score = 97.9 bits (240), Expect = 1e-19
 Identities = 88/293 (30%), Positives = 135/293 (46%), Gaps = 49/293 (16%)

Query: 3   ETLILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAI- 61
           E + +A  L LF  F T++GS++A FS +     +   L F+AGVMI  SF  ++  A+ 
Sbjct: 6   EQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGLGFSAGVMIYISFMEILPTALK 65

Query: 62  ---DISSSFFPVGIGIAL---GIFILVLLDKFIPHEHLVRGYEGPKEFKDKIKAAWL--- 112
              +   S +   +G+A    GI I +L+DK IP +  V  +E PKE   ++K   L   
Sbjct: 66  DFKNHYDSHWAELLGLACFFGGILISLLIDKLIPED--VNPHE-PKEDLSELKICPLPQK 122

Query: 113 ---------------------------LAFAMIIHNLPEGIAIGVSLAYSKTDGIITGLA 145
                                       A A+ IHN PEG A  +S   + T GI   +A
Sbjct: 123 GQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFPEGFATFISSLDNLTLGIAIAIA 182

Query: 146 IGIQDVPEGTAVSLPL--ATLQKKRLMPILLGVLSGVAEMIMVVLG-VIFFSFSSKL-LP 201
           + I ++PEG AVSLP+  AT  KK+    +   LSG AE +   +G +I   F   L L 
Sbjct: 183 VAIHNIPEGLAVSLPIYHATGDKKK--AFIYSALSGFAEPLGAFVGALILLPFIGDLTLA 240

Query: 202 YGLSMAGGAMLYVTIKEMIPEIYMKGKEVNELIITFGFFLGFYLMLFLDTALG 254
              ++  G M+++++ E++P      K  + L   +G   G  +M      LG
Sbjct: 241 ISFAVIAGIMVFISLDELLPAAKTYDKAHDSL---YGLIAGMAIMALSLNLLG 290


>pir||G81230 conserved hypothetical protein NMB0175 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7225393|gb|AAF40632.1| (AE002374) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 269
           
 Score = 89.7 bits (219), Expect = 3e-17
 Identities = 67/259 (25%), Positives = 115/259 (43%), Gaps = 15/259 (5%)

Query: 5   LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA---- 60
           L +AF + L     T LGS L +FS       + F LAFA G M+  S T +   +    
Sbjct: 9   LAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFGLAFAGGAMVYVSLTEIFSKSSEAF 68

Query: 61  ---IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDK----IKAAWLL 113
               D   +F    +    G+  + L+D+ +P+ H     + P   + K     +   + 
Sbjct: 69  AEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNPHETLDAQDPSFQESKRRHIARVGMMA 128

Query: 114 AFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPIL 173
           AFA+  HN PEG+A   +   +   G+   LAI I ++PEG +++ P+    + R   + 
Sbjct: 129 AFAITAHNFPEGLATFFATLENPAVGMPLALAIAIHNIPEGISIAAPVYFATRSRKKTVW 188

Query: 174 LGVLSGVAEMIMVVLGVIFFS--FSSKLLPYGLSMAGGAMLYVTIKEMIP--EIYMKGKE 229
             +LSG+AE +   LG +      S  +      +  G M+++ + E++P  + Y  G E
Sbjct: 189 ACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIAGVMVFLALDELLPAAKRYSDGHE 248

Query: 230 VNELIITFGFFLGFYLMLF 248
               + T    +   L+LF
Sbjct: 249 TVYGLTTGMAVIAVSLVLF 267


>gb|AAG19368.1| (AE005031) GufA protein; GufA [Halobacterium sp. NRC-1]
           Length = 266
           
 Score = 89.3 bits (218), Expect = 4e-17
 Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 3   ETLILAFKLGLFVAFMTSLGSLLALFSH------RMPSWGVDFSLAFAAGVMIVASFTSL 56
           E L + F  GL     T LG+L   F        R+  WG+      A+G+M+ AS   L
Sbjct: 6   ELLFVVFA-GLLTDLATGLGALPFFFVDDIDDRWRVGLWGL------ASGIMVSASGFGL 58

Query: 57  ILPAIDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYE-GPKEFKDK-IKAAWLLA 114
              A++       +  G   G+ ++V+       EH++  +E  P++     +K   L+A
Sbjct: 59  FREALNYGGPT-EIAAGALAGVALVVVA------EHVIDDHEFEPRDIAAADVKKLALIA 111

Query: 115 FAMIIHNLPEGIAIGVSLAYSKTDG-------------IITGLAIGIQDVPEGTAVSLPL 161
             + +H+ PEG+A+GVS A    DG             +   +AI I +VPEG AVS+PL
Sbjct: 112 GVLTVHSFPEGVAVGVSFADMGIDGGLSVLGFSIPILAVFMTIAISIHNVPEGLAVSIPL 171

Query: 162 ATLQKKRLMPILLGVLSGVAEMIMVVLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
                +R   + + V + + + I   +  +F   +   LP+G   AGGAM+++ + E IP
Sbjct: 172 HEHGARRWTLVGVAVFTSIPQPIGAGIAYVFVQIARAALPFGYGFAGGAMVFLVLSEFIP 231

Query: 222 E 222
           E
Sbjct: 232 E 232


>pir||D82001 probable integral membrane protein NMA0093 [imported] - Neisseria
           meningitidis (group A strain Z2491)
           >gi|7378866|emb|CAB83409.1| (AL162752) putative integral
           membrane protein [Neisseria meningitidis Z2491]
           Length = 269
           
 Score = 88.9 bits (217), Expect = 5e-17
 Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 5   LILAFKLGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPA---- 60
           L +AF + L     T LGS L +FS       + F LAFA G M+  S T +   +    
Sbjct: 9   LAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFGLAFAGGAMVYVSLTEIFSKSSEAF 68

Query: 61  ---IDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYEGPKEFKDK----IKAAWLL 113
               D   +F    +    G+  + L+D+ +P+ H     + P   + K     +   + 
Sbjct: 69  AEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNPHETLDAQDPSFQESKRRHIARVGMMA 128

Query: 114 AFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPIL 173
           AFA+  HN PEG+A   +   +   G+   LAI I ++PEG +++ P+    + R   + 
Sbjct: 129 AFAITAHNFPEGLATFFATLENPAVGMPLALAIAIHNIPEGISIAAPVYFATRSRKKTVW 188

Query: 174 LGVLSGVAEMIMVVLGVIFFS--FSSKLLPYGLSMAGGAMLYVTIKEMIP 221
             +LSG+AE +   LG +      S  +      +  G M+++ + E++P
Sbjct: 189 ACLLSGLAEPLGAALGYLVLQPFLSPAVFGSVFGVIAGVMVFLALDELLP 238


>sp|P24198|YGIE_ECOLI HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB INTERGENIC REGION (ORFB)
           (O265) >gi|96076|pir||S22363 gufA protein homolog -
           Escherichia coli >gi|146680|gb|AAA71878.1| (M77129) ORFB
           [Escherichia coli] >gi|1789419|gb|AAC76076.1| (AE000386)
           orf, hypothetical protein [Escherichia coli K12]
           Length = 257
           
 Score = 80.8 bits (196), Expect = 2e-14
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 19/223 (8%)

Query: 11  LGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPV 70
           L +     T +G+ L +   +  +  + FSL FAAG+M++ S   + LPA   +    PV
Sbjct: 7   LTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEM-LPAALAAEGMSPV 65

Query: 71  GIGIALGIFILVLL-----DKFIPHEH----LVRGYEG-PKEFKDKIKAAWLLAFAMIIH 120
              +  G+FI  LL     D+ +PH H    + +  +  PK  K   + A LL   + +H
Sbjct: 66  ---LGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIK---RTAILLTLGISLH 119

Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
           N PEGIA  V+ + +   G    LA+ + ++PEG AV+ P+      +   IL   +SG+
Sbjct: 120 NFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGL 179

Query: 181 AEMIMVVLG--VIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
           AE++  VL   ++    S  ++   ++   G M+ +++ E++P
Sbjct: 180 AEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMP 222


>gb|AAA69208.1| (U28377) ORF_o265; alternate name ygiE; orfB of M77129 [Escherichia
           coli]
           Length = 265
           
 Score = 80.8 bits (196), Expect = 2e-14
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 19/223 (8%)

Query: 11  LGLFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPV 70
           L +     T +G+ L +   +  +  + FSL FAAG+M++ S   + LPA   +    PV
Sbjct: 15  LTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIMLLISLMEM-LPAALAAEGMSPV 73

Query: 71  GIGIALGIFILVLL-----DKFIPHEH----LVRGYEG-PKEFKDKIKAAWLLAFAMIIH 120
              +  G+FI  LL     D+ +PH H    + +  +  PK  K   + A LL   + +H
Sbjct: 74  ---LGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLPKSIK---RTAILLTLGISLH 127

Query: 121 NLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGV 180
           N PEGIA  V+ + +   G    LA+ + ++PEG AV+ P+      +   IL   +SG+
Sbjct: 128 NFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPVYAATGSKRTAILWAGISGL 187

Query: 181 AEMIMVVLG--VIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIP 221
           AE++  VL   ++    S  ++   ++   G M+ +++ E++P
Sbjct: 188 AEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVDELMP 230


>dbj|BAB02495.1| (AB025629) gene_id:MOE17.18~unknown protein [Arabidopsis thaliana]
           Length = 374
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 39  FSLAFAAGVMIVASFTSLILPAIDISSSFFPVGIGIALGIFILVLLDKFIPHEHLVRGYE 98
           F   FA+G+M+  SF  L   AI+ S  FF   +                       G E
Sbjct: 145 FLQGFASGLMLSISFLDLAHNAIN-SIGFFKANLW--------------------KNGDE 183

Query: 99  GPKEFKDK-----IKAAWLLAFAMIIHNLPEGIAIGVSLAYSKTDGIITGLAIGIQDVPE 153
           G K+   K     + +  + A  + +HN PEG+A+ +        G+   LAI + ++PE
Sbjct: 184 GGKDMMKKHRKQVLYSGLITAIGISLHNFPEGMAVFLGSIKGMRVGVNLALAIALHNIPE 243

Query: 154 GTAVSLPLATLQKKRLMPILLGVLSGVAEMIMVVLGVIFF--SFSSKLLPYGLSMAGGAM 211
           G AV+LP+    + +     L  LSG+AE + V++    F  S S ++L   L   GG M
Sbjct: 244 GVAVALPIYFATESKWQAFKLATLSGLAEPLGVIIVAYLFPRSLSPEILEGLLGAVGGIM 303

Query: 212 LYVTIKEMIPEIY-MKGKEVNELIITFGFFLGFYLMLFLDTAL 253
            ++T+ EM+P  +   G++     + FG       + FL+ +L
Sbjct: 304 AFLTLHEMLPLAFDYAGQKQAVKAVFFGMACMSASLYFLELSL 346


>gb|AAF26056.1|AC012562_11 (AC012562) unknown protein; 37802-35617 [Arabidopsis thaliana]
           Length = 595
           
 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 61/218 (27%), Positives = 107/218 (48%), Gaps = 16/218 (7%)

Query: 13  LFVAFMTSLGSLLALFSHRMPSWGVDFSLAFAAGVMIVASFTSLILPAIDISSSFFPVGI 72
           L +A  T LG++   F    P W        AAGVM+ ASF  +       S ++   GI
Sbjct: 83  LAMAAATGLGAVPFFFVELDPQWA-GICNGMAAGVMLAASFDLVKEGQEHGSGNWVVTGI 141

Query: 73  GIALGIFILV---LLDKFIPHEHL-VRGYEGPKEFKDKIKAAWLLAFAMIIHNLPEGIAI 128
            +A  +FI +   +L+++     L ++G +  K          L+   M +H+  EG  +
Sbjct: 142 -LAGALFIWLCKQILEQYGEVSMLDIKGADATKVV--------LVIGIMTLHSFGEGSGV 192

Query: 129 GVSLAYSK--TDGIITGLAIGIQDVPEGTAVSLPLATLQKKRLMPILLGVLSGVAEMIMV 186
           GVS A SK  + G++  LAI + ++PEG AVS+ LA+        +L  +++ + + ++ 
Sbjct: 193 GVSFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLWSIITSLPQPLVA 252

Query: 187 VLGVIFFSFSSKLLPYGLSMAGGAMLYVTIKEMIPEIY 224
           V   +     SK LP+    A G M+++ I E++P+ +
Sbjct: 253 VPAFLCADAFSKFLPFCTGFAAGCMIWMVIAEVLPDAF 290


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.146    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85547738
Number of Sequences: 2977
Number of extensions: 3439053
Number of successful extensions: 12350
Number of sequences better than 1.0e-10: 19
Number of HSP's better than  0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12265
Number of HSP's gapped (non-prelim): 28
length of query: 254
length of database: 189,106,746
effective HSP length: 52
effective length of query: 202
effective length of database: 157,985,422
effective search space: 31913055244
effective search space used: 31913055244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)