BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1446 (PAB1446) DE:COENZYME PQQ SYNTHESIS PROTEIN III related
(254 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75052 coenzyme pqq synthesis protein III related PAB1446 -... 511 e-144
pir||C71108 hypothetical protein PH0635 - Pyrococcus horikoshii ... 426 e-118
pir||T44574 hypothetical protein 12 [imported] - Pyrococcus furi... 343 1e-93
pir||C64505 coenzyme PQQ synthesis protein III homolog - Methano... 136 2e-31
pir||H69030 coenzyme PQQ synthesis protein III - Methanobacteriu... 107 2e-22
gi|11498053 conserved hypothetical protein [Archaeoglobus fulgid... 73 3e-12
>pir||B75052 coenzyme pqq synthesis protein III related PAB1446 - Pyrococcus
abyssi (strain Orsay) >gi|5458824|emb|CAB50311.1|
(AJ248287) COENZYME PQQ SYNTHESIS PROTEIN III related
[Pyrococcus abyssi]
Length = 254
Score = 511 bits (1302), Expect = e-144
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI 60
MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI
Sbjct: 1 MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI 60
Query: 61 EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV 120
EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV
Sbjct: 61 EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV 120
Query: 121 GFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGA 180
GFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGA
Sbjct: 121 GFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGA 180
Query: 181 RVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPIDIPMQKLMLLYNEASRILGRKN 240
RVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPIDIPMQKLMLLYNEASRILGRKN
Sbjct: 181 RVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPIDIPMQKLMLLYNEASRILGRKN 240
Query: 241 VGLSFQVHKYLKVL 254
VGLSFQVHKYLKVL
Sbjct: 241 VGLSFQVHKYLKVL 254
>pir||C71108 hypothetical protein PH0635 - Pyrococcus horikoshii
>gi|3257042|dbj|BAA29725.1| (AP000003) 254aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 254
Score = 426 bits (1083), Expect = e-118
Identities = 200/254 (78%), Positives = 232/254 (90%)
Query: 1 MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI 60
MVK+ILAE+FNSWQGEGGSV GSAFGRRQIF+RFAGCDLRC WCDS FIDASKVK+WRI
Sbjct: 1 MVKLILAEVFNSWQGEGGSVPGSAFGRRQIFVRFAGCDLRCIWCDSSQFIDASKVKKWRI 60
Query: 61 EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV 120
EVEPFS +FEYRENPAS+DEV+ +L LDTGD+HSISYTGGEPTLQI+GL LM+ +K +
Sbjct: 61 EVEPFSGRFEYRENPASIDEVVDAILKLDTGDLHSISYTGGEPTLQIEGLYILMERMKGL 120
Query: 121 GFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGA 180
GFDNFLETHGG PE I+ V++LTDYASVDIKDESA+A++DWR LVL+E+ESI+ILK AGA
Sbjct: 121 GFDNFLETHGGHPELIKRVSYLTDYASVDIKDESARASRDWRGLVLKEVESIKILKEAGA 180
Query: 181 RVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPIDIPMQKLMLLYNEASRILGRKN 240
+VYAKLVVT+ETKLENV+WYA LLKG+APLAIQP+EP+DI M+ LM LY EA+RI+G+KN
Sbjct: 181 KVYAKLVVTRETKLENVKWYANLLKGVAPLAIQPKEPMDISMEYLMKLYREAARIMGKKN 240
Query: 241 VGLSFQVHKYLKVL 254
VGLSFQVHKYLKVL
Sbjct: 241 VGLSFQVHKYLKVL 254
>pir||T44574 hypothetical protein 12 [imported] - Pyrococcus furiosus
(fragment) >gi|6066247|gb|AAF03232.1|AF156097_12
(AF156097) ORF12 [Pyrococcus furiosus]
Length = 218
Score = 343 bits (871), Expect = 1e-93
Identities = 158/218 (72%), Positives = 191/218 (87%)
Query: 1 MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI 60
MVKVIL EIFNSWQGEGGSVEGSAFGRRQIF+RFAGCDLRC++CDS+ +ID VK++R+
Sbjct: 1 MVKVILGEIFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLRCTYCDSRKYIDPRSVKKYRV 60
Query: 61 EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV 120
EVEPFS KF+Y NP ++EVIK + LDTGD+HSISYTGGEPTLQI GL +LM++ KE+
Sbjct: 61 EVEPFSGKFKYFNNPVDVEEVIKWITKLDTGDIHSISYTGGEPTLQILGLASLMEKAKEL 120
Query: 121 GFDNFLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGA 180
G+DNFLETHGG P I+++A+LTDYASVDIKDESA ATKDWR LV+ EI S +ILK AGA
Sbjct: 121 GYDNFLETHGGHPHLIKKIAYLTDYASVDIKDESANATKDWRKLVVNEIASTKILKEAGA 180
Query: 181 RVYAKLVVTQETKLENVRWYAELLKGLAPLAIQPREPI 218
+VY KLVVT+ET++ENVRWYAE+LKG+AP+ IQP+EP+
Sbjct: 181 KVYVKLVVTRETRIENVRWYAEMLKGIAPMVIQPKEPM 218
>pir||C64505 coenzyme PQQ synthesis protein III homolog - Methanococcus
jannaschii >gi|1592229|gb|AAB99666.1| (U67605) coenzyme
PQQ synthesis protein III isolog (Haemophilus
influenzae} [Methanococcus jannaschii]
Length = 243
Score = 136 bits (340), Expect = 2e-31
Identities = 97/258 (37%), Positives = 144/258 (55%), Gaps = 23/258 (8%)
Query: 5 ILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRIEVEP 64
++ EIFNS GEG + GRR IF+RFAGC L C +CD + SK R+E P
Sbjct: 1 MIREIFNSIMGEGKYI-----GRRFIFVRFAGCPLNCVYCDEE-----SKGYFNRVEKIP 50
Query: 65 FSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEVGFDN 124
S +FE + ++++I + L T D+ ++S+TGGEP L K +K + + LK+ G+
Sbjct: 51 GSGEFETLQK-MEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQIKEIAEILKDKGYRT 109
Query: 125 FLETHGGFPEFIREVAHLTDYASVDIK-DESAKATK--DWRSLVLREIESIRILKGAGAR 181
FLE++G FPE I D AS+DIK E + K D+ L E+++I+ L +
Sbjct: 110 FLESNGMFPERI----FYFDIASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSD 165
Query: 182 VYAKLVVTQETKLENVRWYAELLK--GLAPLAIQPREP---IDIPMQKLMLLYNEASRIL 236
+YAK+V+ +ET +E+V+ A+ L G L IQP P I P Q+ + EA
Sbjct: 166 IYAKVVIMEETNIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEY 225
Query: 237 GRKNVGLSFQVHKYLKVL 254
+ NV L+ Q+HKYL +L
Sbjct: 226 LKDNVMLTIQMHKYLGML 243
>pir||H69030 coenzyme PQQ synthesis protein III - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622338|gb|AAB85716.1| (AE000890) coenzyme PQQ
synthesis protein III [Methanobacterium
thermoautotrophicum]
Length = 247
Score = 107 bits (264), Expect = 2e-22
Identities = 84/234 (35%), Positives = 109/234 (45%), Gaps = 43/234 (18%)
Query: 1 MVKVILAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDSKAFIDASKVKRWRI 60
+++ + E+F+S QGEG V GRRQIF+RFAGC+L CS+CD+ D S + +
Sbjct: 3 LMRAPIVEVFSSIQGEGLLV-----GRRQIFVRFAGCNLNCSYCDTPESRDPSAGRLF-- 55
Query: 61 EVEPFSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEV 120
+ E+ +++ L T D HSIS TGGEP L + L L+E
Sbjct: 56 ----------------TAPELTEIIEGLITPDFHSISITGGEPLLYPDFITEL---LEES 96
Query: 121 GFDNFLETHGGFPEFIREVAHLTDYASVDIKD--------ESAKATKDWRS---LVLREI 169
LET+G P +AHL DYASVDIK S D S L+ REI
Sbjct: 97 PHRTLLETNGSLPSNAERIAHLFDYASVDIKIAEHFSDNLRSGTTESDISSPGDLIDREI 156
Query: 170 ESIRILKGAGARVYAKLVVTQETKLENVRWYAELLKGLA------PLAIQPREP 217
+ I IL G Y K+VV T + AE L PL IQP P
Sbjct: 157 QVINILISRGVNTYCKVVVMPTTGAGYIGALAERLLECVDEPERLPLVIQPCSP 210
>gi|11498053 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483010|pir||A69305 conserved hypothetical protein
AF0441 - Archaeoglobus fulgidus
>gi|2650186|gb|AAB90793.1| (AE001074) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 225
Score = 73.0 bits (176), Expect = 3e-12
Identities = 69/251 (27%), Positives = 119/251 (46%), Gaps = 34/251 (13%)
Query: 6 LAEIFNSWQGEGGSVEGSAFGRRQIFIRFAGCDLRCSWCDS-KAFIDASKVKRWRIEVEP 64
L EIF S QGEG + G RQ+F+RFAGC+L C +CD+ K + + R P
Sbjct: 5 LIEIFESIQGEGFYI-----GVRQLFVRFAGCNLNCYYCDTPKTSENCLDLTANRTLKNP 59
Query: 65 FSRKFEYRENPASLDEVIKVVLSLDTGDVHSISYTGGEPTLQIKGLKALMKELKEVGFDN 124
S ++ V +D+ VHS+ +TGGEP LQ + + +L K
Sbjct: 60 VSAEY--------------VQGRIDSSKVHSVCFTGGEPMLQAEFIASLSKT-----HPF 100
Query: 125 FLETHGGFPEFIREVAHLTDYASVDIKDESAKATKDWRSLVLREIESIRILKGAGAR-VY 183
+LE++ PE +++ DY + D+K A K++ + + ++ ++L+ R +
Sbjct: 101 YLESNMTLPEKAKKL-KFCDYVAGDLKVREA-GLKNYDEVFQKTVKCFKVLRNTRRRKTF 158
Query: 184 AKLVVTQETKLENVRWYA-ELLKGLAPLAIQPREPIDIPMQKLMLLYNEASRILGRKNVG 242
K+V+ + + V A E+ + +QP ++K++ L R++ +
Sbjct: 159 CKIVLPDKFDADEVLNSAYEIKNYVFGFVLQP--VFGSRVEKILKL---QKRMIDFADTR 213
Query: 243 LSFQVHKYLKV 253
+ QVHKYL V
Sbjct: 214 VIPQVHKYLGV 224
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91576971
Number of Sequences: 2977
Number of extensions: 3659166
Number of successful extensions: 7822
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7809
Number of HSP's gapped (non-prelim): 6
length of query: 254
length of database: 189,106,746
effective HSP length: 54
effective length of query: 200
effective length of database: 156,788,448
effective search space: 31357689600
effective search space used: 31357689600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)