BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1450 (PAB1450) DE:Hypothetical protein
(428 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75051 hypothetical protein PAB1450 - Pyrococcus abyssi (st... 823 0.0
pir||B75087 multidrug resistance protein (multidrug-ef flux tran... 83 4e-15
pir||H72265 hypothetical protein TM1336 - Thermotoga maritima (s... 82 2e-14
pir||D72388 hypothetical protein TM0342 - Thermotoga maritima (s... 81 2e-14
>pir||B75051 hypothetical protein PAB1450 - Pyrococcus abyssi (strain Orsay)
>gi|5458816|emb|CAB50303.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 428
Score = 823 bits (2103), Expect = 0.0
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MIYSRIGGRNTTLDDPFDLRFANCLLKFSTNKFKISLLILGFMKQRLYALFLLTTVLRIV 60
MIYSRIGGRNTTLDDPFDLRFANCLLKFSTNKFKISLLILGFMKQRLYALFLLTTVLRIV
Sbjct: 1 MIYSRIGGRNTTLDDPFDLRFANCLLKFSTNKFKISLLILGFMKQRLYALFLLTTVLRIV 60
Query: 61 GDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNFLDRTEKKVRLAFLALF 120
GDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNFLDRTEKKVRLAFLALF
Sbjct: 61 GDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNFLDRTEKKVRLAFLALF 120
Query: 121 AQSFLAITLVRFAQDVRIFYLLISLISALDTLHRYYGFSLIAFMTLEESELQKLNAKVQT 180
AQSFLAITLVRFAQDVRIFYLLISLISALDTLHRYYGFSLIAFMTLEESELQKLNAKVQT
Sbjct: 121 AQSFLAITLVRFAQDVRIFYLLISLISALDTLHRYYGFSLIAFMTLEESELQKLNAKVQT 180
Query: 181 IGGVTSLFSFPIMGYLAYLFGIKLMLLDALFLLIGALLLVPYINVSVRRGESRKEKECLK 240
IGGVTSLFSFPIMGYLAYLFGIKLMLLDALFLLIGALLLVPYINVSVRRGESRKEKECLK
Sbjct: 181 IGGVTSLFSFPIMGYLAYLFGIKLMLLDALFLLIGALLLVPYINVSVRRGESRKEKECLK 240
Query: 241 IEISRKIVFAGIILILTFNFAIASARIFIFNALRTLAKGEVLYGLLRSLGTLGSLISAFG 300
IEISRKIVFAGIILILTFNFAIASARIFIFNALRTLAKGEVLYGLLRSLGTLGSLISAFG
Sbjct: 241 IEISRKIVFAGIILILTFNFAIASARIFIFNALRTLAKGEVLYGLLRSLGTLGSLISAFG 300
Query: 301 IVFIAHKFRIGILKPLVIGMMLESLAVLFLGFSLLPLLLAGVLLLSFGGEILNISFDSLF 360
IVFIAHKFRIGILKPLVIGMMLESLAVLFLGFSLLPLLLAGVLLLSFGGEILNISFDSLF
Sbjct: 301 IVFIAHKFRIGILKPLVIGMMLESLAVLFLGFSLLPLLLAGVLLLSFGGEILNISFDSLF 360
Query: 361 QKVIPLERLGTYRGVFDALATLIIPISQLTFAWLIEKGFNVPMLAFIAFGAGIIATLGFY 420
QKVIPLERLGTYRGVFDALATLIIPISQLTFAWLIEKGFNVPMLAFIAFGAGIIATLGFY
Sbjct: 361 QKVIPLERLGTYRGVFDALATLIIPISQLTFAWLIEKGFNVPMLAFIAFGAGIIATLGFY 420
Query: 421 VIVSDVIG 428
VIVSDVIG
Sbjct: 421 VIVSDVIG 428
>pir||B75087 multidrug resistance protein (multidrug-ef flux transporter)
PAB0724 - Pyrococcus abyssi (strain Orsay)
>gi|5458511|emb|CAB49999.1| (AJ248286) MULTIDRUG
RESISTANCE PROTEIN (MULTIDRUG-EF FLUX TRANSPORTER)
[Pyrococcus abyssi]
Length = 418
Score = 83.5 bits (203), Expect = 4e-15
Identities = 91/386 (23%), Positives = 171/386 (43%), Gaps = 18/386 (4%)
Query: 46 RLYALFLLTTVLRIVGDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNFL 105
R + LF+ + +G AI+ V+LP ++L+ T+S + + LA ++P +I P+ G F
Sbjct: 3 RNFWLFVAGRFISQLGWAIQEVALPLYVLDVTHSAKIMTLFVLADLIPSIITTPIAGVFG 62
Query: 106 DRTEKKVRLAFLALFAQSFLAITLVRFAQDVRIFYLLISLISALDTLHRYYGFSLIAFMT 165
DR ++K + L L + + +R L++ +I A+ G +
Sbjct: 63 DRYDRKKIMVGFDLIRGVLLFLVIAFNFLTIRCL-LVVQVIMAIMNAFFSAGTGAMYPDL 121
Query: 166 LEESELQKLNAKVQTIGGVTSLFSFPIMGYLAYLFGIKLMLLDALFLLIGALLLVPYI-- 223
++ EL++ N+ V + ++ L I G++ GIKL +L G+ L +I
Sbjct: 122 VKPEELERANSIVMSASIISRLVGPAIGGFVYGFGGIKLAILMNAISFFGSGLFEIFIKY 181
Query: 224 -----NVSVRRGESRKEKECLKIEISRKIV--FAGIILILTFNFAIASARIFIFNALRTL 276
N+ R KE LK +S + G++++L A ++ I+ + L
Sbjct: 182 EWKTRNIEGFSDFVRDIKEGLKFIMSNSFISTLIGLVILLNALGAPFASIIYPYAMREIL 241
Query: 277 AKGEVLYGLLRSLGTLGSLISAFGI-VFIAHKFRIGILKPLVIGMMLESLAVLFLG-FSL 334
+GL+ S LG+LI + F+ K I + ++ +E + +L + F
Sbjct: 242 KFSSQQFGLVESAFMLGALIGNLIVGAFLGAKAGRYIFRLFLVNGAVELIFILIISPFLA 301
Query: 335 LPLLLAGVLLLSFG------GEILNISFDSLFQKVIPLERLGTYRGVFDALATLIIPISQ 388
LP A +LLL G G ++N+ S Q+ +P E G + LA + P+S
Sbjct: 302 LPRNSAFMLLLVLGATMGMAGAMINVPLASKLQRAVPSEIRGRVFSTMEMLARIANPLSL 361
Query: 389 LTFAWLIEKGFNVPMLAFIAFGAGII 414
+ L++ +F+ G+G++
Sbjct: 362 VVVGPLVDTIGAWKTASFLWLGSGVV 387
>pir||H72265 hypothetical protein TM1336 - Thermotoga maritima (strain MSB8)
>gi|4981896|gb|AAD36408.1|AE001788_3 (AE001788)
permease, putative [Thermotoga maritima]
Length = 390
Score = 81.5 bits (198), Expect = 2e-14
Identities = 82/356 (23%), Positives = 156/356 (43%), Gaps = 14/356 (3%)
Query: 50 LFLLTTVLRIVGDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNFLDRTE 109
LF + + ++G I V+L W L +KT S + + ++S LP +I P G +DR
Sbjct: 7 LFASGSFVSLIGTRIYQVALAWWLYSKTGSSEYVGLFMISSFLPAIIVSPFAGTVVDRHS 66
Query: 110 KKVRLAFL-ALFAQSFLAITLVRFAQDVRIFYLLI--SLISALDTLHRYYGFSLIAFMTL 166
++ + + L F+ + L+ + ++ + LLI L+S D+ SL+ +
Sbjct: 67 RRNMMVVMDILRGVLFMYLFLMEYFSELTMALLLIVTVLVSVFDSFFNPAVDSLLPDLVR 126
Query: 167 EESELQKLNAKVQTIGGVTSLFSFPIMGYLAYLFGIK-LMLLDALFLLIGALLLV----- 220
+E+ L + N+ + + ++ + + L + G+ ++L+++L LI + +
Sbjct: 127 KEN-LVRANSLYRLLKNLSKILGPALGSLLLKVVGLAGVILINSLSFLISGIFEMFIKVE 185
Query: 221 --PYINVSVRRGESRKEKECLKIEISRKIVFAGIILILTFNFAIASARIFIFNALRTLAK 278
VS R + K L S + + I++I NF S + + + L K
Sbjct: 186 EKHLKKVSKERNMWQDIKSALLYIRSVRFILVTILVIAIMNFFTGSMHVLLPEHVSKLGK 245
Query: 279 GEVLYGLLRSLGTLGSLISAFGIVFIAHKFRIGILKPLVIGMMLESLAVLFLGFSLLPLL 338
E +YG L S+ + G LI F + I + + L ++G L G L+
Sbjct: 246 SEWVYGTLMSMLSFGGLIVTFLMATIRTRASVKTLGLNLVGYGLAVFVFAMTGNHW--LM 303
Query: 339 LAGVLLLSFGGEILNISFDSLFQKVIPLERLGTYRGVFDALATLIIPISQLTFAWL 394
A L+ + NI+ +L Q IP E G + A++ ++P+S F +L
Sbjct: 304 FAMYFLIGIFQTLFNINVITLLQLAIPEEMRGKIFSLISAVSFSLLPVSYGFFGFL 359
>pir||D72388 hypothetical protein TM0342 - Thermotoga maritima (strain MSB8)
>gi|4980843|gb|AAD35428.1|AE001715_4 (AE001715)
permease, putative [Thermotoga maritima]
Length = 413
Score = 81.1 bits (197), Expect = 2e-14
Identities = 92/407 (22%), Positives = 184/407 (44%), Gaps = 42/407 (10%)
Query: 45 QRLYALFLLTTVLRIVGDAIEGVSLPWHLLNKTNSLLSIAGYSLASMLPWVIFPPLIGNF 104
+R + L L + I+G +++ V++P +L+ T+S ++A ++A M+P ++F P+ G
Sbjct: 8 KRNFFLLALGRFVSILGSSVQAVAIPLFVLDLTHSGSAVALMTVAYMVPRILFTPIAGIV 67
Query: 105 LDRTEKK---VRLAFLALFAQSFLAITLVRFAQDVRIFYLLISLISALDTLHRYYGFSLI 161
DR ++K V + FL F FLA+ R + + + Y+ ++ +D L F +
Sbjct: 68 GDRGDRKFLMVSMDFLRGFLICFLALLAFRNSITLPVLYVSQIAMAIMDNL-----FDIP 122
Query: 162 AFMTLEESELQKLNAKVQTIGGVTSLFS---FPIMGYLAY-LFGIKLMLL--DALFLL-- 213
+ Q + +I G+ +F P +G + Y +GI ++ L F+L
Sbjct: 123 TGAMFPDIVPQDFLMRANSIMGMVRIFPQILGPALGGVIYGFYGIAIVFLVNGVSFVLSA 182
Query: 214 IGALLLVPYINVSVRRGESRKEKECLKIEI----SRKIVFAGIILILTFNFAIASARIFI 269
I + +V V + + + E LK + +++ +I L N I+ + +
Sbjct: 183 ISEIFIVYSRKVEKKPAKFSQILEDLKEGFLFIWNHELIRTILIFALFLNLLISPLFMVV 242
Query: 270 F-NALRTLAKGEVL-YGLLRSLGTLGSLISAFGIVFIAHKFRIGILKPLVIGMMLESLAV 327
+ +R + K +G L + TLG+L+ F + ++ + + K + I + L L +
Sbjct: 243 YPYTIREVMKFSAQEFGFLETSFTLGALLGNF--LIASYLSKKNMWKAMKISIFLFELPI 300
Query: 328 LFLGFSLLP-----------LLLAGVLLLSFGGEILNISFDSLFQKVIPLERLGTYRGVF 376
+FLGF ++P L L++ F I+N+ D+ FQK+ P
Sbjct: 301 VFLGFLVMPDFSLNRLVLFSLFFITFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFL 360
Query: 377 DALATLIIPISQLTFAWLIEKGFNVPMLAFIAFGAGIIATLGFYVIV 423
+A + P+ + + +L+++ VP + F ++ L F V V
Sbjct: 361 ILVANGVTPLGSVLYGYLVDR---VP----VHFLYYVVGALSFLVAV 400
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.149 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136181076
Number of Sequences: 2977
Number of extensions: 5248772
Number of successful extensions: 20828
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20820
Number of HSP's gapped (non-prelim): 4
length of query: 428
length of database: 189,106,746
effective HSP length: 53
effective length of query: 375
effective length of database: 157,386,935
effective search space: 59020100625
effective search space used: 59020100625
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 166 (69.1 bits)