BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1451 (hpcE) DE:2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE
ISOMERASE.
(225 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UYW0|YE51_PYRAB HYPOTHETICAL PROTEIN PAB1451 >gi|7448788|pi... 454 e-127
sp|O58377|Y643_PYRHO HYPOTHETICAL PROTEIN PH0643 >gi|7448782|pir... 425 e-118
sp|Q59050|YG56_METJA HYPOTHETICAL PROTEIN MJ1656 >gi|2127713|pir... 236 1e-61
pir||A69068 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase - Meth... 218 5e-56
emb|CAB46032.1| (Z97340) isomerase like protein [Arabidopsis tha... 211 7e-54
gi|11499807 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-... 208 3e-53
pir||D70854 hypothetical protein Rv2993c - Mycobacterium tubercu... 206 2e-52
gb|AAK42882.1| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hp... 203 2e-51
dbj|BAA95083.1| (AB041600) unnamed protein product [Mus musculus] 201 6e-51
dbj|BAB00076.1| (AB022217) isomerase-like protein [Arabidopsis t... 200 1e-50
pir||T29076 hypothetical protein SC1C2.27 - Streptomyces coelico... 199 3e-50
pir||S77124 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxylas... 192 4e-48
pir||T45421 probable 2-hydroxyhepta-2,4-diene-1,7- dioate isomae... 192 4e-48
pir||E75376 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/ 5-car... 189 2e-47
gi|11431155 CGI-105 protein [Homo sapiens] 187 8e-47
dbj|BAB05724.1| (AP001514) 2-hydroxyhepta-2,4-diene-1,7-dioate i... 187 1e-46
gi|7705608 CGI-105 protein [Homo sapiens] >gi|4929679|gb|AAD3410... 186 2e-46
pir||C75575 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/ 5-car... 185 3e-46
pir||C71425 hypothetical protein - Arabidopsis thaliana 183 1e-45
pir||T03559 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase/ 5-car... 182 3e-45
dbj|BAB05719.1| (AP001514) 2-hydroxyhepta-2,4-diene-1,7-dioate i... 175 3e-43
pir||C69837 5-oxo-1,2,5-tricarboxilic-3-penten acid de homolog y... 173 1e-42
gb|AAG19447.1| (AE005037) 2-hydroxyhepta-2,4-diene-1,7-dioate is... 173 1e-42
emb|CAB65580.1| (AL136058) putative 2-hydroxyhepta-2,4-diene-1,7... 170 1e-41
sp|P34673|YO23_CAEEL HYPOTHETICAL 23.3 KDA PROTEIN ZK688.3 IN CH... 168 4e-41
gb|AAF55854.1| (AE003733) CG5793 gene product [Drosophila melano... 167 9e-41
emb|CAB55708.1| (AL117387) putative 2-hydroxyhepta-2,4-diene-1,7... 166 2e-40
sp|P76004|YCGM_ECOLI PROTEIN YCGM >gi|7448786|pir||A64864 probab... 165 4e-40
sp|Q46978|HPAG_ECOLI 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTI... 164 1e-39
sp|Q9RPU5|HPAG_SALDU 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTI... 161 9e-39
emb|CAC12279.1| (AL445066) 2-hydroxyhepta-2, 4-diene-1, 7-dioate... 159 2e-38
gb|AAF55945.1| (AE003737) CG6028 gene product [Drosophila melano... 159 2e-38
pir||G83604 conserved hypothetical protein PA0318 [imported] - P... 159 4e-38
pir||G83131 conserved hypothetical protein PA4122 [imported] - P... 156 2e-37
gi|6324161 Ynl168cp [Saccharomyces cerevisiae] >gi|1730800|sp|P5... 156 2e-37
pir||T50353 homolog to prokaryotic 2-hydroxyhepta-2,4-diene-1,7-... 152 4e-36
pir||A83338 conserved hypothetical protein PA2471 [imported] - P... 152 5e-36
emb|CAC11884.1| (AL445065) probable 2-hydroxyhepta-2, 4-diene-1,... 152 5e-36
sp|P37352|HPCE_ECOLI HOMOPROTOCATECHUATE CATABOLISM BIFUNCTIONAL... 146 2e-34
pir||H72757 hypothetical protein APE0053 - Aeropyrum pernix (str... 145 6e-34
dbj|BAA25605.1| (D88014) homologous to HpcE (HHDD isomerase) pro... 144 8e-34
emb|CAA12268.1| (AJ224977) ORF 2 [Sphingomonas sp. RW5] 144 8e-34
gi|11497711 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-... 141 7e-33
gb|AAG39451.1| (AF173167) probable maleylpyruvate isomerase [Pse... 136 2e-31
pir||B81094 isomerase, probable NMB1338 [imported] - Neisseria m... 131 8e-30
gb|AAF49840.1| (AE003539) CG11251 gene product [Drosophila melan... 129 3e-29
pir||T50940 DitD protein [imported] - Pseudomonas abietaniphila ... 129 4e-29
pir||C81847 probable hydrolase NMA1552 [imported] - Neisseria me... 129 4e-29
gb|AAC69614.1| (AF061446) unknown [Chromobacterium violaceum] 123 2e-27
dbj|BAA36035.1| (D90753) ZK688.3 protein [Escherichia coli] 122 3e-27
emb|CAA73581.1| (Y13118) ORF1 [Sphingomonas sp.] 122 5e-27
emb|CAA73583.1| (Y13118) ORF2 [Sphingomonas sp.] 120 1e-26
pir||F83131 conserved hypothetical protein PA4121 [imported] - P... 117 1e-25
dbj|BAB04790.1| (AP001510) unknown conserved protein in others [... 115 6e-25
gb|AAD12620.1| (AF036940) fumarylpyruvate hydrolase [Ralstonia s... 114 1e-24
pir||A82389 conserved hypothetical protein VCA1004 [imported] - ... 101 1e-20
pir||H81417 hypothetical protein Cj0021c [imported] - Campylobac... 100 1e-20
pir||T50935 isomerase/decarboxylase homolog DitH [imported] - Ps... 100 2e-20
gb|AAK42651.1| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hp... 99 5e-20
pir||C70585 hypothetical protein Rv0939 - Mycobacterium tubercul... 86 4e-16
gb|AAB58814.1| (U38978) homolog to 2-hydroxyhepta-2,4-diene-1,7-... 82 8e-15
dbj|BAA87171.1| (AB027867) Hypothetical protein [Schizosaccharom... 80 2e-14
gb|AAK43045.1| 2-hydroxyhepta-2 ,4-diene-1,7-dioate isomerase (h... 80 3e-14
>sp|Q9UYW0|YE51_PYRAB HYPOTHETICAL PROTEIN PAB1451 >gi|7448788|pir||A75051
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. PAB1451 -
Pyrococcus abyssi (strain Orsay)
>gi|5458815|emb|CAB50302.1| (AJ248287)
2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE.
[Pyrococcus abyssi]
Length = 225
Score = 454 bits (1156), Expect = e-127
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP 60
MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP
Sbjct: 1 MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP 60
Query: 61 RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS 120
RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS
Sbjct: 61 RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS 120
Query: 121 KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL 180
KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL
Sbjct: 121 KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL 180
Query: 181 EPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEVIAEDSILC 225
EPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEVIAEDSILC
Sbjct: 181 EPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEVIAEDSILC 225
>sp|O58377|Y643_PYRHO HYPOTHETICAL PROTEIN PH0643 >gi|7448782|pir||D71109 probable
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase -
Pyrococcus horikoshii >gi|3257051|dbj|BAA29734.1|
(AP000003) 230aa long hypothetical
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
[Pyrococcus horikoshii]
Length = 230
Score = 425 bits (1081), Expect = e-118
Identities = 201/224 (89%), Positives = 217/224 (96%)
Query: 2 IRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPR 61
+RLPFRDGYY+VRPTKI+ALAKNYAEHAREMGSEPPEEP+IFLKPPSALIGP S I+LPR
Sbjct: 7 VRLPFRDGYYDVRPTKIVALAKNYAEHAREMGSEPPEEPIIFLKPPSALIGPGSSIILPR 66
Query: 62 RSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSK 121
RSKRVDHEVELAVI+GKRAKNVPA KAFDYILGYTI+LDITARDLQAEARKKGYPWT+SK
Sbjct: 67 RSKRVDHEVELAVIMGKRAKNVPASKAFDYILGYTIILDITARDLQAEARKKGYPWTISK 126
Query: 122 GFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLE 181
GFDTFAPIGPR+VD RELDPSDLEIGLKVNGK+RQLGRTS+MIFKIPELIEYIS IMTLE
Sbjct: 127 GFDTFAPIGPRVVDSRELDPSDLEIGLKVNGKIRQLGRTSQMIFKIPELIEYISHIMTLE 186
Query: 182 PGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEVIAEDSILC 225
PGDIIATGTPPGVGPLRHGD+IEAW+EGIG +E +V+AEDSILC
Sbjct: 187 PGDIIATGTPPGVGPLRHGDRIEAWIEGIGKMEFDVLAEDSILC 230
>sp|Q59050|YG56_METJA HYPOTHETICAL PROTEIN MJ1656 >gi|2127713|pir||F64506
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase homolog -
Methanococcus jannaschii >gi|1500558|gb|AAB99677.1|
(U67606) 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
(hpcE) [Methanococcus jannaschii]
Length = 237
Score = 236 bits (597), Expect = 1e-61
Identities = 116/210 (55%), Positives = 155/210 (73%), Gaps = 6/210 (2%)
Query: 12 EVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVE 71
E++PTKII + NY +HA+E+ E PE P+IFLKP SA+I I+ PR SKRVD+EVE
Sbjct: 34 EIKPTKIICVGLNYIDHAKELNMEIPEYPIIFLKPTSAIIYNEDYIIRPRISKRVDYEVE 93
Query: 72 LAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGP 131
LA++IGK+ KN+ ++A DYI+GYTIL D+TARDLQ +K WT +K FDTF PIGP
Sbjct: 94 LAIVIGKKCKNIKKDEANDYIMGYTILNDVTARDLQ----QKDGQWTRAKSFDTFCPIGP 149
Query: 132 RIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
RIV +++DP +L I +VNG+++Q T MIF + EL+E+++SIMTL PGDII+TGTP
Sbjct: 150 RIV--KDIDPMNLNIECRVNGEIKQKSNTKNMIFDVYELVEFVASIMTLYPGDIISTGTP 207
Query: 192 PGVGPLRHGDKIEAWVEGIGVLEEEVIAED 221
PGVG L+ GD +E +EGIG+L V E+
Sbjct: 208 PGVGELKAGDVVECEIEGIGILRNYVKDEE 237
>pir||A69068 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622625|gb|AAB85982.1| (AE000911)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
[Methanobacterium thermoautotrophicum]
Length = 260
Score = 218 bits (549), Expect = 5e-56
Identities = 105/205 (51%), Positives = 145/205 (70%), Gaps = 6/205 (2%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
V P+K++ + NY +HA E+G + P+EP+IFLKPP+ +IG ++ P S VD+EVEL
Sbjct: 55 VSPSKVVCVGLNYRDHAAELGMDIPDEPIIFLKPPTTVIGSGDTVIYPEMSSEVDYEVEL 114
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
A ++ +RA+ V + A ++I GYT+L D+TARDLQ R+ G WT +K FDTF PIGP
Sbjct: 115 AAVVSERARRVDSSAASEFIAGYTVLNDVTARDLQ---RRDG-QWTRAKSFDTFCPIGP- 169
Query: 133 IVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
V + ++ P +L+I LK+NG+VRQ TS MIF + EL+E+IS +MTLEPGD+IATGTPP
Sbjct: 170 -VIETDVTPDNLDISLKLNGEVRQSSNTSNMIFTVHELLEFISHVMTLEPGDVIATGTPP 228
Query: 193 GVGPLRHGDKIEAWVEGIGVLEEEV 217
GVG + GD + A VEG+G L V
Sbjct: 229 GVGQMVPGDTVRATVEGVGTLVNRV 253
>emb|CAB46032.1| (Z97340) isomerase like protein [Arabidopsis thaliana]
>gi|7268342|emb|CAB78636.1| (AL161542) isomerase like
protein [Arabidopsis thaliana]
Length = 222
Score = 211 bits (531), Expect = 7e-54
Identities = 108/217 (49%), Positives = 147/217 (66%), Gaps = 7/217 (3%)
Query: 1 MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP 60
MI+ F+ G TKI+ + +NYA HA+E+G+ P+EPVIFLKP S+ + I +P
Sbjct: 5 MIQRMFKQG------TKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIP 58
Query: 61 RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS 120
+ HEVELA++IG++A++VP A DYI GY + LD+TAR+LQA A+ G PWTV+
Sbjct: 59 HPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVA 118
Query: 121 KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL 180
KG DTF PI + DP +LE+ LKV+G+ RQ G T +MIFK+P LI YISSIMTL
Sbjct: 119 KGQDTFTPISSVLPKAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTL 178
Query: 181 EPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEV 217
GD+I TGTP GVGP++ G KI A + G+ ++ +V
Sbjct: 179 Y-GDVILTGTPEGVGPVKIGQKITAGITGLSEVQFDV 214
>gi|11499807 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2)
[Archaeoglobus fulgidus]
>gi|9789822|sp|O28058|YM25_ARCFU HYPOTHETICAL PROTEIN
AF2225 >gi|7448784|pir||A69528
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2)
homolog - Archaeoglobus fulgidus
>gi|2648302|gb|AAB89031.1| (AE000952)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2)
[Archaeoglobus fulgidus]
Length = 250
Score = 208 bits (525), Expect = 3e-53
Identities = 107/209 (51%), Positives = 143/209 (68%), Gaps = 6/209 (2%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
V P+KIIA+ NY +HA E+ PEEP++F+KP +A+IG + I+LP+ S+RVD+E EL
Sbjct: 41 VVPSKIIAVGLNYIDHAEELNMPVPEEPILFMKPSTAVIGHDDCIILPQISQRVDYEGEL 100
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
AV+I + +NVP A DYILGYT D+TARDLQA K WT +K FDTFAP+GP
Sbjct: 101 AVVIAEDCRNVPETNAADYILGYTCFNDVTARDLQA----KDGQWTRAKSFDTFAPLGPY 156
Query: 133 IVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
I + DPS L I +VNGKV Q TS +IF + +L+ ++SS+MTL+ GD+IATGTP
Sbjct: 157 IAEID--DPSKLGIQTRVNGKVVQKSNTSNLIFDVFQLVSFVSSVMTLKAGDVIATGTPA 214
Query: 193 GVGPLRHGDKIEAWVEGIGVLEEEVIAED 221
GVG L+ GD +E +E IG+L + D
Sbjct: 215 GVGMLKDGDVVEVEIEKIGILRNTAVKID 243
>pir||D70854 hypothetical protein Rv2993c - Mycobacterium tuberculosis (strain
H37RV) >gi|2791590|emb|CAA16078.1| (AL021287)
hypothetical protein Rv2993c [Mycobacterium
tuberculosis]
Length = 239
Score = 206 bits (519), Expect = 2e-52
Identities = 106/204 (51%), Positives = 138/204 (66%), Gaps = 5/204 (2%)
Query: 16 TKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVI 75
+K++ + KNYA+H EMG PP +PVIFLKP +A+IGPN+ I LP + V E ELA++
Sbjct: 35 SKVVCVGKNYADHIAEMGGRPPADPVIFLKPNTAIIGPNTPIRLPANASPVHFEGELAIV 94
Query: 76 IGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV- 134
IG+ K+VPA +A D ILGYTI D++ARD Q + WT +KG DTF P+GP IV
Sbjct: 95 IGRACKDVPAAQAVDNILGYTIGNDVSARDQQ----QSDGQWTRAKGHDTFCPVGPWIVT 150
Query: 135 DKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
D DP+DLE+ VNG V+Q RTS MI I ++E+IS+IMTL PGD+I TGTP GV
Sbjct: 151 DLAPFDPADLELRTVVNGDVKQHARTSLMIHDIGAIVEWISAIMTLLPGDLILTGTPAGV 210
Query: 195 GPLRHGDKIEAWVEGIGVLEEEVI 218
GP+ GD + +EGIG L V+
Sbjct: 211 GPIEDGDTVSITIEGIGTLTNPVV 234
>gb|AAK42882.1| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2) [Sulfolobus
solfataricus]
Length = 304
Score = 203 bits (510), Expect = 2e-51
Identities = 109/214 (50%), Positives = 143/214 (65%), Gaps = 7/214 (3%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P KI LA NY H +E +EPP+EP IF K +ALIG N I+ P+ S +VD+E+EL V
Sbjct: 91 PEKIFLLAVNYKAHGKETNNEPPKEPYIFTKFSNALIGHNQPILYPKASNKVDYEIELGV 150
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKK-GYPWTVSKGFDTFAPIGPRI 133
IIGK+ K V E+AFDY+ GYT+ DI+ RD Q + G W KG DT AP+GP I
Sbjct: 151 IIGKQGKYVKRERAFDYVFGYTVFNDISYRDRQFPSEMPYGMRWVHGKGMDTGAPMGPWI 210
Query: 134 VDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
V K E+ +P +L + L+VNG+VRQ +MIFKI E+IEY+S+ +TL+PGDII+TGTPP
Sbjct: 211 VTKDEIPNPYELRLTLRVNGEVRQDAYAEDMIFKIDEIIEYLSNGITLKPGDIISTGTPP 270
Query: 193 GVGP-----LRHGDKIEAWVEGIGVLEEEVIAED 221
GVG L+ GD IEA + IGVL ++ E+
Sbjct: 271 GVGLATGKFLKPGDTIEAEISKIGVLRNYLVKEE 304
>dbj|BAA95083.1| (AB041600) unnamed protein product [Mus musculus]
Length = 227
Score = 201 bits (506), Expect = 6e-51
Identities = 91/193 (47%), Positives = 133/193 (68%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
I+ + +NYA+H +EM S EPV+FLKP +A S +++P + + HEVEL V++G
Sbjct: 23 IVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGVLLG 82
Query: 78 KRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKR 137
KR + +P A DY+ GY + LD+TARD+Q E +KKG PWT++K F + P+ + ++
Sbjct: 83 KRGEAIPEAAAMDYVAGYALCLDMTARDVQEECKKKGLPWTLAKSFTSSCPVSAFVPKEK 142
Query: 138 ELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPL 197
DP L + LKVNG++RQ G+TS MIF IP +I Y+S I+TLE GD+I TGTP GVGP+
Sbjct: 143 IPDPHALRLWLKVNGELRQEGKTSSMIFSIPYIISYVSKIITLEEGDLILTGTPKGVGPI 202
Query: 198 RHGDKIEAWVEGI 210
+ D+IEA ++G+
Sbjct: 203 KENDEIEAGIDGV 215
>dbj|BAB00076.1| (AB022217) isomerase-like protein [Arabidopsis thaliana]
Length = 224
Score = 200 bits (503), Expect = 1e-50
Identities = 100/217 (46%), Positives = 144/217 (66%), Gaps = 6/217 (2%)
Query: 1 MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP 60
MI+ F+ G TKI+ + NYA HA+E+G+ P++P++FLKP S+ + I +P
Sbjct: 5 MIQRLFKQG------TKIVGVGLNYASHAKELGNALPKDPIVFLKPTSSYLENGGTIEIP 58
Query: 61 RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS 120
+ HEVELAV+IG++A++VP A +YI GY + LD+TAR+LQ A G P T++
Sbjct: 59 HPLDSLHHEVELAVVIGQKARDVPERLAMNYIGGYALALDMTARELQVSAMASGLPCTLA 118
Query: 121 KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL 180
KG DTF PI + LDP++LE+ LKV+ + RQ G T +MIFK+P LI YISS+MTL
Sbjct: 119 KGQDTFTPISSVLPKAMVLDPNNLELWLKVDDETRQKGWTKDMIFKVPYLISYISSVMTL 178
Query: 181 EPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEV 217
GD+I TGTP G+GP++ G KI A + G+ ++ +V
Sbjct: 179 FKGDVILTGTPEGIGPVKIGQKITAGITGLSEVQFDV 215
>pir||T29076 hypothetical protein SC1C2.27 - Streptomyces coelicolor
>gi|3355694|emb|CAA19994.1| (AL031124) hypothetical
protein SC1C2.27 [Streptomyces coelicolor A3(2)]
Length = 261
Score = 199 bits (500), Expect = 3e-50
Identities = 100/207 (48%), Positives = 135/207 (64%), Gaps = 5/207 (2%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
V P+K++A +NYAEHARE+G+E P+ P F KP +++IGP + P ++ + HE EL
Sbjct: 56 VLPSKVVAFGRNYAEHARELGNEVPDAPFAFFKPSTSVIGPGDAVQYPSFTEELHHEAEL 115
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
AV+IG+ + VP E+ D I GYT DITARD+Q ++ W +KGFD+ P+GP
Sbjct: 116 AVVIGRMCREVPRERVQDVIFGYTCANDITARDVQRREKQ----WARAKGFDSSCPLGPW 171
Query: 133 IVDKRELDPS-DLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
+ +L + DL + L VNG RQLGRTSEMI I +LI IS MTL PGD+I TGTP
Sbjct: 172 VETDLDLAAAGDLTVQLTVNGAQRQLGRTSEMIHSIEDLIVNISEAMTLLPGDVILTGTP 231
Query: 192 PGVGPLRHGDKIEAWVEGIGVLEEEVI 218
GVGPL GD++ +EGIG L +V+
Sbjct: 232 AGVGPLNVGDEVAVTIEGIGTLTNKVV 258
>pir||S77124 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxylase/ isomerase -
Synechocystis sp. (strain PCC 6803)
>gi|1652763|dbj|BAA17682.1| (D90908)
5-oxo-1,2,5-tricarboxilic-3-penten acid
decarboxilase/isomer [Synechocystis sp.]
Length = 276
Score = 192 bits (482), Expect = 4e-48
Identities = 101/206 (49%), Positives = 136/206 (65%), Gaps = 7/206 (3%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P+KI+A+ +NY HA E+G++ P EP++F KPPSA+ IV P +S+RVD+E ELAV
Sbjct: 57 PSKIVAVGRNYRAHAAELGNDVPAEPLLFFKPPSAIAADQEEIVYPSQSQRVDYEGELAV 116
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV 134
IIGK+ K++ E+A I GYTI DITARDLQ ++ WT +KGFD F P+GP +V
Sbjct: 117 IIGKQVKDITEEEAASAIWGYTIANDITARDLQ----RQDSQWTRAKGFDGFCPLGPWVV 172
Query: 135 DKRELDP-SDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPG 193
R +DP + LE + RQ S+M+F P L+ YIS +MTL PGD+I TGTP G
Sbjct: 173 --RHIDPEAHLETTVNDEETPRQATAISDMVFTPPVLVSYISRVMTLYPGDVILTGTPEG 230
Query: 194 VGPLRHGDKIEAWVEGIGVLEEEVIA 219
+ L+ GDK+E +EGIG L +IA
Sbjct: 231 ISALQVGDKVEVEIEGIGNLTNTIIA 256
>pir||T45421 probable 2-hydroxyhepta-2,4-diene-1,7- dioate isomaerase [imported]
- Mycobacterium leprae >gi|2414554|emb|CAB16443.1|
(Z99263) possible 2-hydroxyhepta-2,4-diene-1,7- dioate
isomaerase [Mycobacterium leprae]
Length = 242
Score = 192 bits (482), Expect = 4e-48
Identities = 106/207 (51%), Positives = 139/207 (66%), Gaps = 8/207 (3%)
Query: 16 TKIIALAKNYAEHAREMGSEP---PEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
+K++ + KNYA+H EMG + +PVIFLKP +A+IGPN I LP + V E EL
Sbjct: 35 SKVVCIGKNYADHIVEMGGQTGLASADPVIFLKPNTAIIGPNVPIRLPANASPVHFEGEL 94
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
A+++G+ K+VPA +A D ILGYTI D++ARD Q R G WT +KG DTF P+GP
Sbjct: 95 ALVVGRSCKDVPAVQAVDCILGYTIGNDMSARDQQ---RADGQ-WTRAKGHDTFCPVGPW 150
Query: 133 IV-DKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
IV D LDP+DLE+ VNG+V+Q RTS MI I ++E+IS++MTL PGD+I TGTP
Sbjct: 151 IVTDLGPLDPADLELRTAVNGEVKQHSRTSLMIHGIGAIMEWISAVMTLLPGDLILTGTP 210
Query: 192 PGVGPLRHGDKIEAWVEGIGVLEEEVI 218
GVGP+ GD + VEGIG L V+
Sbjct: 211 AGVGPVEDGDIVSITVEGIGTLTNPVV 237
>pir||E75376 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/
5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate
decarboxylase-related protein - Deinococcus radiodurans
(strain R1) >gi|6459372|gb|AAF11167.1|AE002004_6
(AE002004) 2-hydroxyhepta-2,4-diene-1,7-dioate
isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate
decarboxylase-related protein [Deinococcus radiodurans]
Length = 250
Score = 189 bits (476), Expect = 2e-47
Identities = 95/203 (46%), Positives = 136/203 (66%), Gaps = 9/203 (4%)
Query: 15 PTKIIALAKNYAEHAREMGSEP---PEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVE 71
P+KI+ + +NY +H RE+G++ P EP IFLK P+AL P + P S+ E E
Sbjct: 50 PSKIVCVGRNYLDHIRELGNDTGDLPAEPGIFLKGPNALAEPGGTVEYPSWSENFHFEGE 109
Query: 72 LAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGP 131
LA++IG+RA+N+ A++A +LGYT LD+TARD Q K W +K D F P+GP
Sbjct: 110 LALVIGQRARNLKADEALGAVLGYTCGLDLTARDRQ----KTDLQWFRAKAADRFCPLGP 165
Query: 132 RIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
+V + DPSD+ + +VNG+ RQ GRTS MIF + +++ Y++ +TLEPGD++ TGTP
Sbjct: 166 WLVT--QFDPSDVRVQTRVNGEPRQDGRTSHMIFDVVQILTYLTRFVTLEPGDVVLTGTP 223
Query: 192 PGVGPLRHGDKIEAWVEGIGVLE 214
GVGPL+ GD++E V+GIGVLE
Sbjct: 224 EGVGPLQRGDRVEVEVDGIGVLE 246
>gi|11431155 CGI-105 protein [Homo sapiens]
Length = 314
Score = 187 bits (471), Expect = 8e-47
Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 10/213 (4%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELA 73
RP K++ + NY +H +E P+EP+IF K S+++GP +VLP +S+ VD EVELA
Sbjct: 104 RPDKVVCVGMNYVDHCKEQNVPVPKEPIIFSKFASSIVGPYDEVVLPPQSQEVDWEVELA 163
Query: 74 VIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRI 133
V+IGK+ K++ A A ++ G+T+ D++ARD Q R+ G W + K FDTF P+GP +
Sbjct: 164 VVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWQ--MRRNGKQWLLGKTFDTFCPLGPAL 221
Query: 134 VDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
V K + DP +L+I +VNG+V Q G T++M+FK +LI ++S +T PGD+I TGTPP
Sbjct: 222 VTKDSVADPHNLKICCRVNGEVVQSGNTNQMVFKTEDLIAWVSQFVTFYPGDVILTGTPP 281
Query: 193 GVGP-------LRHGDKIEAWVEGIGVLEEEVI 218
GVG L+ GD+++ +E +GV+ +V+
Sbjct: 282 GVGVFRKPPVFLKKGDEVQCEIEELGVIINKVV 314
>dbj|BAB05724.1| (AP001514) 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Bacillus
halodurans]
Length = 276
Score = 187 bits (469), Expect = 1e-46
Identities = 99/209 (47%), Positives = 133/209 (63%), Gaps = 6/209 (2%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPV-IFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
RP KI+A NY H +EM + + FLK +++IGPN I+LP ++R+DHE+EL
Sbjct: 72 RPGKIVAAPVNYMSHKKEMNVDHTARVLGFFLKATTSIIGPNDPIILPYNNRRIDHELEL 131
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
A +IGKRAK+V E A DYI GYT L D+T R + ++ + K FDTF PIGP
Sbjct: 132 AFVIGKRAKHVKKENAHDYIFGYTGLNDVTVRPTKNREEER----CLRKSFDTFTPIGPW 187
Query: 133 IVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
IV E+ DP +L I L+VN +VRQ T++M+ I EL+E S +MTLEPGD+IATGTP
Sbjct: 188 IVTSDEIKDPQNLTISLQVNHEVRQHVNTNQMVCGIAELVEIFSHVMTLEPGDLIATGTP 247
Query: 192 PGVGPLRHGDKIEAWVEGIGVLEEEVIAE 220
GVGP++ GD + +E IG V+ E
Sbjct: 248 DGVGPIKDGDTVTLQMESIGSFSNPVVLE 276
>gi|7705608 CGI-105 protein [Homo sapiens] >gi|4929679|gb|AAD34100.1|AF151863_1
(AF151863) CGI-105 protein [Homo sapiens]
Length = 314
Score = 186 bits (468), Expect = 2e-46
Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 10/213 (4%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELA 73
RP K++ + NY +H +E P+EP+IF K S+++GP +VLP +S+ VD EVELA
Sbjct: 104 RPDKVVCVGMNYVDHCKEQNVPVPKEPIIFSKFASSIVGPYDEVVLPPQSQEVDWEVELA 163
Query: 74 VIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRI 133
V+IGK+ K++ A A ++ G+T+ D++ARD Q R+ G W + K FDTF P+GP +
Sbjct: 164 VVIGKKGKHIKATDAMAHVGGFTVAHDVSARDWQ--MRRNGKQWLLGKTFDTFCPLGPAL 221
Query: 134 VDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
V K + DP +L+I +VNG+V Q G T++M+FK +LI ++S +T PGD+I TGTPP
Sbjct: 222 VTKDSVADPHNLKICCRVNGEVVQSGNTNQMVFKTEDLIAWVSQFVTFYPGDVILTGTPP 281
Query: 193 GVGP-------LRHGDKIEAWVEGIGVLEEEVI 218
GVG L+ GD+++ +E +GV+ +V+
Sbjct: 282 GVGVFRKPPVFLKKGDEVQCEIEELGVIINKVV 314
>pir||C75575 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/
5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase
- Deinococcus radiodurans (strain R1)
>gi|6460702|gb|AAF12407.1|AE001863_32 (AE001863)
2-hydroxyhepta-2,4-diene-1,7-dioate
isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate
decarboxylase [Deinococcus radiodurans]
Length = 262
Score = 185 bits (466), Expect = 3e-46
Identities = 96/208 (46%), Positives = 136/208 (65%), Gaps = 4/208 (1%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P K+IALA NYA+H E+G + PEEPV+FLKP ++L+ ++ PR +K + +EVEL +
Sbjct: 44 PGKVIALALNYADHVAELGFKAPEEPVMFLKPNTSLLPHQGTVIYPRGAKFMHYEVELGI 103
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV 134
+IG+ A+ V A+ A DY+ GYTI D+ RD + + P +KG+DTF P+GP +V
Sbjct: 104 VIGRDARRVKAKDADDYVGGYTIANDLVVRDYVSNYYR---PPMRAKGWDTFGPLGPYLV 160
Query: 135 DKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPG 193
E+ DP +L + VNG++RQ G T +MI K PELIE++S MTLE GD+I TGTP G
Sbjct: 161 SADEVPDPYNLGLRAYVNGELRQEGSTRDMILKAPELIEFMSRFMTLEAGDVILTGTPKG 220
Query: 194 VGPLRHGDKIEAWVEGIGVLEEEVIAED 221
V + GD + ++G+G LE V ED
Sbjct: 221 VSHVHPGDVMRLEIDGLGALENPVALED 248
>pir||C71425 hypothetical protein - Arabidopsis thaliana
Length = 367
Score = 183 bits (461), Expect = 1e-45
Identities = 95/188 (50%), Positives = 127/188 (67%), Gaps = 7/188 (3%)
Query: 1 MIRLPFRDGYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLP 60
MI+ F+ G TKI+ + +NYA HA+E+G+ P+EPVIFLKP S+ + I +P
Sbjct: 5 MIQRMFKQG------TKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIP 58
Query: 61 RRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVS 120
+ HEVELA++IG++A++VP A DYI GY + LD+TAR+LQA A+ G PWTV+
Sbjct: 59 HPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVA 118
Query: 121 KGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTL 180
KG DTF PI + DP +LE+ LKV+G+ RQ G T +MIFK+P LI YISSIMTL
Sbjct: 119 KGQDTFTPISSVLPKAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTL 178
Query: 181 EPGDIIAT 188
GD+I T
Sbjct: 179 Y-GDVILT 185
>pir||T03559 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase/
5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioatedecarboxylase
- Rhodobacter capsulatus >gi|3128360|gb|AAC16212.1|
(AF010496)
2-hydroxyhepta-2,4-diene-1,
7-dioateisomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,
7-dioatedecarboxylase [Rhodobacter capsulatus]
Length = 280
Score = 182 bits (457), Expect = 3e-45
Identities = 97/210 (46%), Positives = 129/210 (61%), Gaps = 11/210 (5%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
K+IA+ NYA+HA E G P EPV+F+K SA+ GP+ + PR S+++D EVELA +I
Sbjct: 72 KLIAIGLNYADHAEEAGLTVPPEPVVFMKATSAICGPDDDVEAPRGSEKLDWEVELAFVI 131
Query: 77 GKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
G RAK V E A D++ GY I D++ R Q E + W K DTFAP+GP +V K
Sbjct: 132 GTRAKYVTLEDAMDHVAGYMICNDVSERSFQIE---RSGQWVKGKSHDTFAPLGPWLVTK 188
Query: 137 REL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
E+ DP L++ L VNG RQ G T+ M++ + L+ Y+S MTLEPGDII TGTPPGVG
Sbjct: 189 DEIKDPQALDLWLNVNGVRRQTGTTATMVYGVAFLVHYLSQFMTLEPGDIITTGTPPGVG 248
Query: 196 P-------LRHGDKIEAWVEGIGVLEEEVI 218
L GD IE + G+G + V+
Sbjct: 249 MGSRPPKFLHAGDVIELGITGLGSQRQVVV 278
>dbj|BAB05719.1| (AP001514) 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Bacillus
halodurans]
Length = 319
Score = 175 bits (440), Expect = 3e-43
Identities = 95/209 (45%), Positives = 129/209 (61%), Gaps = 12/209 (5%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
KII + NY EH EM E P+ PVIF K + +IGP + LP ++++D+E ELA +I
Sbjct: 103 KIICVGHNYREHILEMKREIPKYPVIFAKFANTIIGPEDNVPLPSITEQLDYEAELAFVI 162
Query: 77 GKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
GK+AK+V E A DY+ GYTI+ DITARDLQ ++ W K D P+GP +V K
Sbjct: 163 GKKAKDVAKEDALDYVAGYTIVNDITARDLQ----RRTIQWLQGKTLDGSLPMGPWLVTK 218
Query: 137 REL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
E+ +P LEI L VNG+ RQ T ++F I +L+ ++S IMTLEPGD++ TGTP GVG
Sbjct: 219 DEIPNPHQLEITLSVNGEERQRSNTKNLVFSIQDLVVFLSGIMTLEPGDVVCTGTPGGVG 278
Query: 196 P-------LRHGDKIEAWVEGIGVLEEEV 217
L+ GD + +E +G LE V
Sbjct: 279 VAREPQLFLQDGDVVRIELEKVGTLENRV 307
>pir||C69837 5-oxo-1,2,5-tricarboxilic-3-penten acid de homolog yisK - Bacillus
subtilis >gi|2145376|emb|CAA70682.1| (Y09476) YisK
[Bacillus subtilis] >gi|2633411|emb|CAB12915.1| (Z99109)
similar to 5-oxo-1,2,5-tricarboxilic-3-penten acid
decarboxylase [Bacillus subtilis]
Length = 301
Score = 173 bits (435), Expect = 1e-42
Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 16/216 (7%)
Query: 14 RPTK-IIALAKNYAEHAREMGSEP--PEEPVIFLKPPSALIGPNSVIVLPRR-SKRVDHE 69
+P+K II + KNY +HA EMGSE PE P++F K P + G ++ + ++D+E
Sbjct: 89 KPSKNIICIGKNYRDHAIEMGSEADIPEHPMVFTKSPVTVTGHGDIVKSHEEVTSQLDYE 148
Query: 70 VELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPI 129
ELAV+IGK + E A+D++ GYTI+ DITARDLQ K+ + + K DT P+
Sbjct: 149 GELAVVIGKSGTRISKEDAYDHVFGYTIVNDITARDLQ----KRHKQFFIGKSLDTTCPM 204
Query: 130 GPRIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIAT 188
GP +V K + +P L++ +VNG++RQ G S+MIF IPELIE +S MTLE GDIIAT
Sbjct: 205 GPVLVHKSSIQEPERLKVETRVNGELRQSGSASDMIFSIPELIETLSKGMTLEAGDIIAT 264
Query: 189 GTPPGVGP-------LRHGDKIEAWVEGIGVLEEEV 217
GTP GVG LR GDKI+ ++ IG L ++
Sbjct: 265 GTPSGVGKGFTPPKFLRSGDKIDITIDPIGTLSNQI 300
>gb|AAG19447.1| (AE005037) 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; HpcE
[Halobacterium sp. NRC-1]
Length = 244
Score = 173 bits (435), Expect = 1e-42
Identities = 86/206 (41%), Positives = 128/206 (61%), Gaps = 6/206 (2%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P+K++ + +NYA HA E ++ P+ P++FLKPP+A+ G LP + RV+HE ELAV
Sbjct: 42 PSKVVCVGRNYAAHADERDADVPDRPLLFLKPPTAVAGHGDATPLPPNT-RVEHEAELAV 100
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV 134
+IG +A+N+ A A + GYT+ D++ R Q + W K FD P+GP +
Sbjct: 101 VIGTQARNLDAGAAMAAVEGYTVANDVSNRTDQDREQN----WVRGKAFDGSCPLGPVVA 156
Query: 135 DKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
E+ P D + L VNG+ RQ G S+ +F +P L+ I++ +TL+PGD++ TGTPPGV
Sbjct: 157 TPDEV-PDDATVALDVNGERRQSGSISQFVFDVPTLLAEITAFVTLQPGDVVLTGTPPGV 215
Query: 195 GPLRHGDKIEAWVEGIGVLEEEVIAE 220
G L GD++ A VEG+G LE V+ E
Sbjct: 216 GELTDGDRVAASVEGVGTLEHTVVRE 241
>emb|CAB65580.1| (AL136058) putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
[Streptomyces coelicolor A3(2)]
Length = 285
Score = 170 bits (427), Expect = 1e-41
Identities = 89/211 (42%), Positives = 130/211 (61%), Gaps = 13/211 (6%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
KI+ + NY +HARE G+EPP EPV+F K P ++GP+ +++PR S + D EVELAV+I
Sbjct: 75 KIVCIGLNYHDHARETGAEPPAEPVVFFKAPDTVVGPHDTVLVPRGSTKTDWEVELAVVI 134
Query: 77 GKRAKNV-PAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVD 135
G+ A+ + AE+ + GY + D++ R+ Q E +G W K +TF P+GP +V
Sbjct: 135 GRTARYLESAEEGLACVAGYAVAHDVSEREFQIE---RGGTWDKGKNCETFNPLGPWLVT 191
Query: 136 KREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
E+ DP L + L VNG+++Q G T+E IF + E++ Y+S M L PGDII TGTP GV
Sbjct: 192 ADEVPDPQRLPLRLWVNGELKQDGTTAEQIFPVGEVVRYLSRFMVLRPGDIINTGTPAGV 251
Query: 195 GP--------LRHGDKIEAWVEGIGVLEEEV 217
LR GD +E +EG+G +E+
Sbjct: 252 AMGQPEPKPYLRAGDVVELEIEGLGRQRQEL 282
>sp|P34673|YO23_CAEEL HYPOTHETICAL 23.3 KDA PROTEIN ZK688.3 IN CHROMOSOME III
>gi|630783|pir||S44919 ZK688.3 protein - Caenorhabditis
elegans >gi|289782|gb|AAA28230.1| (L16621) coded for by
C. elegans cDNAs GenBank:T01366 and T00450; putative
[Caenorhabditis elegans]
Length = 214
Score = 168 bits (422), Expect = 4e-41
Identities = 84/189 (44%), Positives = 118/189 (61%)
Query: 16 TKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVI 75
TKI+ + +NY +HA E+G+ P++P++F+K ++ I IV P + + EVEL V+
Sbjct: 12 TKIVCVGRNYKDHALELGNAIPKKPMLFVKTVNSFIVEGEPIVAPPGCQNLHQEVELGVV 71
Query: 76 IGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVD 135
I K+A + A DYI GYT+ LD+TARD Q EA+K G PW ++K FD PIG +
Sbjct: 72 ISKKASRISKSDAMDYIGGYTVALDMTARDFQDEAKKAGAPWFLAKSFDGSCPIGGFLPV 131
Query: 136 KRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
+P D+E+ K+NGK +Q RT MIF IP L+EY + TLE GD++ TGTP GV
Sbjct: 132 SDIPNPHDVELFCKINGKDQQRCRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTPAGVT 191
Query: 196 PLRHGDKIE 204
+ GD IE
Sbjct: 192 KINSGDVIE 200
>gb|AAF55854.1| (AE003733) CG5793 gene product [Drosophila melanogaster]
Length = 220
Score = 167 bits (419), Expect = 9e-41
Identities = 85/204 (41%), Positives = 123/204 (59%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
KI+ +A NY + P+EP++FLKP S+ + IVLP+ +V +EVEL V+I
Sbjct: 17 KIVGVALNYMDVVLARNVPVPKEPLVFLKPTSSYLQEGQPIVLPKVFTKVAYEVELGVVI 76
Query: 77 GKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
GK KNV A Y+ GY + LD+TA+ AR G+PWT+ KGFDT P+ I +
Sbjct: 77 GKPCKNVSKADAMSYVAGYCLALDLTAQCNLGPARAAGHPWTLGKGFDTSTPVSQFIPIE 136
Query: 137 RELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
+ DP +L + L VNG ++Q G T+++IFK+P++I Y+S MTLE D+I TGTP G
Sbjct: 137 KVTDPHNLPLWLTVNGDLKQNGCTADLIFKVPDIISYVSKYMTLEANDLILTGTPNGADA 196
Query: 197 LRHGDKIEAWVEGIGVLEEEVIAE 220
+ GD I+ + + L +V AE
Sbjct: 197 FKAGDVIQCGMADLAKLTFQVEAE 220
>emb|CAB55708.1| (AL117387) putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
[Streptomyces coelicolor A3(2)]
Length = 292
Score = 166 bits (416), Expect = 2e-40
Identities = 88/206 (42%), Positives = 127/206 (60%), Gaps = 10/206 (4%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELA 73
RP ++ + +NYA HA E GSEPP PVIF KPP+ ++GPN + +PR S R D EVELA
Sbjct: 71 RPGAVVCIGQNYAAHAAESGSEPPTRPVIFFKPPNTVVGPNDEVEIPRGSARTDWEVELA 130
Query: 74 VIIGKRAKNVPAE-KAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
V+IG+ A+ + + +A +++ GY + D++ RD Q E G W+ K TF P+GP
Sbjct: 131 VVIGRTARYLDSPGQALEHVAGYAVSNDVSERDFQLE--HSGGQWSKGKSCATFNPLGPF 188
Query: 133 IVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
+V E+ D L + VNG+ RQ RT++MIF + +L+ +S + L+PGD+I TGTP
Sbjct: 189 LVPADEVPDVQALRLRSFVNGEPRQDSRTADMIFSVAQLVYDLSQYLVLDPGDVINTGTP 248
Query: 192 PGVG------PLRHGDKIEAWVEGIG 211
GV LR GD +E +EG+G
Sbjct: 249 EGVALSGRFPYLRPGDVMEIEIEGLG 274
>sp|P76004|YCGM_ECOLI PROTEIN YCGM >gi|7448786|pir||A64864 probable
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase b1180 -
Escherichia coli >gi|1787428|gb|AAC74264.1| (AE000216)
putative isomerase [Escherichia coli K12]
>gi|4062757|dbj|BAA36014.1| (D90751) ZK688.3 protein
[Escherichia coli] >gi|4062767|dbj|BAA36027.1| (D90752)
ZK688.3 protein [Escherichia coli]
Length = 219
Score = 165 bits (414), Expect = 4e-40
Identities = 83/195 (42%), Positives = 117/195 (59%), Gaps = 1/195 (0%)
Query: 16 TKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVI 75
+K++ + NYA+H +EMGS PEEPV+F+KP +AL + +P V HEVELAV+
Sbjct: 17 SKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVL 76
Query: 76 IGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRI-V 134
IG + E I GY + LD+T RD+Q + +K G PW +K FD P+ I
Sbjct: 77 IGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPA 136
Query: 135 DKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
+ DP + + L VNG+ RQ G T++MI KI LI Y+S TL+ GD++ TGTP GV
Sbjct: 137 AEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGV 196
Query: 195 GPLRHGDKIEAWVEG 209
GPL+ GD++ +G
Sbjct: 197 GPLQSGDELTVTFDG 211
>sp|Q46978|HPAG_ECOLI 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL
ISOMERASE/DECARBOXYLASE [INCLUDES:
2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD
ISOMERASE); 5-CARBOXYMETHYL-2-OXO-HEX-3-ENE-1,7-DIOATE
DECARBOXYLASE (OPET DECARBOXYLASE)]
>gi|757826|emb|CAA86040.1| (Z37980)
5-oxo-1,2,5-tricarboxilic-3-penten acid
decarboxilase/isomer [Escherichia coli]
Length = 429
Score = 164 bits (410), Expect = 1e-39
Identities = 86/206 (41%), Positives = 124/206 (59%), Gaps = 4/206 (1%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
+ AL NYA+HA E+ +PPEEP++FLK P+ L G N V P + + +E EL V+IG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78 KRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKR 137
K+A+NV A DY+ GYT+ D RD + P K D P+ IV K
Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYR---PNLRVKSRDGLTPMLSTIVPKE 341
Query: 138 EL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
+ DP +L + VNG++RQ G T+++IF +P LI Y+S MTL PGD+IATGTP G+
Sbjct: 342 AIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSD 401
Query: 197 LRHGDKIEAWVEGIGVLEEEVIAEDS 222
+ GD++ VEG+G L +++E++
Sbjct: 402 VVPGDEVVVEVEGVGRLVNRIVSEET 427
Score = 81.5 bits (198), Expect = 8e-15
Identities = 58/188 (30%), Positives = 91/188 (47%), Gaps = 9/188 (4%)
Query: 36 PPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGY 95
PP+ V F+KP + +IG I P+ K V +A+I+GK A V E A +YI GY
Sbjct: 31 PPKTAVWFIKPRNTVIGCGEPIPFPQGEK-VLSGATVALIVGKTATKVREEDAAEYIAGY 89
Query: 96 TILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVR 155
+ D++ L E+ + P +K D F PIG + + +L I ++NG+
Sbjct: 90 ALANDVS---LPEESFYR--PAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPA 141
Query: 156 QLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEE 215
T+++ +L+ +S TL PGD I GTP ++ GD++ EG LE
Sbjct: 142 DHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLEN 201
Query: 216 EVIAEDSI 223
V+ E +
Sbjct: 202 PVVDEREV 209
>sp|Q9RPU5|HPAG_SALDU 4-HYDROXYPHENYLACETATE DEGRADATION BIFUNCTIONAL
ISOMERASE/DECARBOXYLASE [INCLUDES:
2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE (HHDD
ISOMERASE); 5-CARBOXYMETHYL-2-OXO-HEX-3-ENE-1,7-DIOATE
DECARBOXYLASE (OPET DECARBOXYLASE)]
>gi|5833401|gb|AAD53501.1|AF144422_8 (AF144422) HpaG
[Salmonella dublin]
Length = 429
Score = 161 bits (402), Expect = 9e-39
Identities = 83/206 (40%), Positives = 124/206 (59%), Gaps = 4/206 (1%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
+ AL NYA+HA E+ PP+EP++F+K P+ + V P + + +E EL V+IG
Sbjct: 225 LFALGLNYADHASELAFTPPKEPLVFIKAPNTFTEHHQTSVRPNNVEYMHYEAELVVVIG 284
Query: 78 KRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKR 137
K A+ V +A +Y+ GYT+ D RD + P K D PIGP IVDK
Sbjct: 285 KTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYR---PNLRVKSRDGLTPIGPWIVDKE 341
Query: 138 EL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
+ DP +L + VNG++RQ G T+++IF IP LI Y+S MTL+PGD+IATGTP G+
Sbjct: 342 AVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIATGTPKGLSD 401
Query: 197 LRHGDKIEAWVEGIGVLEEEVIAEDS 222
+ GD++ ++G+G L +++ E+S
Sbjct: 402 VVPGDEVVLEIKGVGRLVNQIVCEES 427
Score = 81.5 bits (198), Expect = 8e-15
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 9/186 (4%)
Query: 36 PPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGY 95
PP+ V F+KP + +I I+ P+ K V +A+I+GK A +E A +YI GY
Sbjct: 31 PPKTAVWFIKPRNTVIRHGEPILYPQGEK-VLSGATVALIVGKTASRKRSEAAAEYIAGY 89
Query: 96 TILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVR 155
+ +++ L E+ + P +K D F P+G D +L I ++NG+
Sbjct: 90 ALANEVS---LPEESFYR--PAIKAKCRDGFCPLGEMAPLS---DVDNLTIITEINGREA 141
Query: 156 QLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEE 215
T+++ +L+ +S TL PGD I GTP LR GD++ +G+ LE
Sbjct: 142 DHWNTADLQRSAAQLLSALSEFATLNPGDAILLGTPQNRVALRPGDRVRILAKGLPALEN 201
Query: 216 EVIAED 221
V+AED
Sbjct: 202 PVVAED 207
>emb|CAC12279.1| (AL445066) 2-hydroxyhepta-2, 4-diene-1, 7-dioate isomerase related
protein [Thermoplasma acidophilum]
Length = 250
Score = 159 bits (399), Expect = 2e-38
Identities = 86/212 (40%), Positives = 124/212 (57%), Gaps = 8/212 (3%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
V P KI A N+ H++E ++ P +P F K +AL+G N PR +++D+E E+
Sbjct: 34 VNPGKIFLPAVNFRSHSQESDTKFPPKPYFFTKFSNALVGHNGTAHRPREIEKLDYEGEI 93
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQ-AEARKKGYPWTVSKGFDTFAPIGP 131
++IGKR K + E+A +YI G+TI+ D++ARD Q E GY W K FD P+GP
Sbjct: 94 GIVIGKRGKRIGVEEAQNYIFGFTIVDDVSARDYQFPEMHPYGYNWVQGKAFDEALPVGP 153
Query: 132 RIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
IV + E+ L+I +VNG++RQ G T +M+F + +LI +S +TLEPGD+I TGTP
Sbjct: 154 YIVTRDEI-RFPLKIETRVNGELRQSGTTEDMVFSVEQLISTVSQTITLEPGDLITTGTP 212
Query: 192 PGVGP------LRHGDKIEAWVEGIGVLEEEV 217
GV L GD + V GIG L +
Sbjct: 213 AGVAAFTEAKYLSDGDTVSISVSGIGELVHRI 244
>gb|AAF55945.1| (AE003737) CG6028 gene product [Drosophila melanogaster]
Length = 288
Score = 159 bits (399), Expect = 2e-38
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 12/214 (5%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P KII + NY +H E P+EP+ F K +AL+GP ++ S ++D EVEL
Sbjct: 77 PGKIICIGLNYQDHCDEQNKPTPKEPLFFSKFNNALVGPQDNVIAHAASSKIDWEVELVC 136
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV 134
+IGK A+ VP +A DY+ GY++ DI+ARD Q E + G + + K DTF P+GP +V
Sbjct: 137 VIGKVARQVPKSQAMDYVFGYSVAQDISARDWQKE--RNGGQFLMGKSMDTFLPLGPAVV 194
Query: 135 DKRELDPSDLEIGLK--VNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
K L P + LK VNG +Q G T +IFK+ ++I +S +TL PGDII TGTP
Sbjct: 195 HK-SLVPDVYNLNLKTWVNGVEKQNGNTGNLIFKLDDVINRLSQTITLLPGDIIVTGTPK 253
Query: 193 GVGP-------LRHGDKIEAWVEGIGVLEEEVIA 219
GVG L+ GD +++ + G+G L +++A
Sbjct: 254 GVGMHRTPPEFLQPGDVVQSEIVGLGKLCNKIVA 287
>pir||G83604 conserved hypothetical protein PA0318 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946165|gb|AAG03707.1|AE004470_1 (AE004470)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 221
Score = 159 bits (397), Expect = 4e-38
Identities = 78/203 (38%), Positives = 126/203 (61%), Gaps = 1/203 (0%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
K++ + +NYAEHA+E+ + P EP++F+KP S ++ + + LP+ V +E E+AV+I
Sbjct: 19 KLVCVGRNYAEHAKELNNPVPTEPLLFIKPGSCVVPVSGGLSLPQERGSVHYEAEIAVLI 78
Query: 77 GKRAKNVP-AEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVD 135
GK P E+ D I GY LD+T R++QA+ ++KG PW ++K FD + P +
Sbjct: 79 GKPLSRKPNREEVLDAISGYAPALDLTLREVQAKLKEKGLPWELAKSFDGAGVLSPFVNA 138
Query: 136 KRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
+ DP+D+ I L +NG+VRQ G + +M+ I LI++I+ +L+ GD++ TGTP GVG
Sbjct: 139 DQFPDPTDIGIRLTINGEVRQDGNSRDMLNPIVPLIQHIAGHFSLQAGDVVLTGTPSGVG 198
Query: 196 PLRHGDKIEAWVEGIGVLEEEVI 218
PL GD++ + G E V+
Sbjct: 199 PLNSGDELLLELPGASRFETRVL 221
>pir||G83131 conserved hypothetical protein PA4122 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950325|gb|AAG07509.1|AE004828_10 (AE004828)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 259
Score = 156 bits (391), Expect = 2e-37
Identities = 87/204 (42%), Positives = 118/204 (57%), Gaps = 4/204 (1%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
+ AL NYA+HA E+ + P EP+ FLK P G V P + +E EL +IG
Sbjct: 46 MFALGLNYADHAAELSFKAPSEPLAFLKSPGTYTGHRQVSWRPDNVDYMHYECELVAVIG 105
Query: 78 KRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKR 137
K A+NV E A Y+ GYT+ D RD + P K D P+GP IVD
Sbjct: 106 KPARNVRREDALGYLAGYTVCNDYAIRDYLENYYR---PNLRVKNRDATTPVGPWIVDAA 162
Query: 138 EL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
E+ +P+ L + VNG++RQ G T++MIF IP LIEY SS MTL+PGD+IATGTP G+
Sbjct: 163 EVPEPNRLTLRTWVNGELRQEGSTADMIFDIPYLIEYFSSFMTLQPGDMIATGTPEGLSD 222
Query: 197 LRHGDKIEAWVEGIGVLEEEVIAE 220
+ GD++ VEG+G L +++E
Sbjct: 223 VVPGDEVVVEVEGVGRLVNRIVSE 246
>gi|6324161 Ynl168cp [Saccharomyces cerevisiae]
>gi|1730800|sp|P53889|YNQ8_YEAST HYPOTHETICAL 28.8 KDA
PROTEIN IN PSD1-SKO1 INTERGENIC REGION
>gi|2131905|pir||S60959 hypothetical protein YNL168c -
yeast (Saccharomyces cerevisiae)
>gi|1050785|emb|CAA63271.1| (X92517) N1696
[Saccharomyces cerevisiae] >gi|1302142|emb|CAA96055.1|
(Z71444) ORF YNL168c [Saccharomyces cerevisiae]
Length = 259
Score = 156 bits (390), Expect = 2e-37
Identities = 89/221 (40%), Positives = 133/221 (59%), Gaps = 36/221 (16%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSV-------------------- 56
KII + +NYA H +E+ + P++P FLKP S+++ P S
Sbjct: 11 KIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 70
Query: 57 -----IVLPRRSKRVDHEVELAVIIGKRAKNVPA---EKAFDYILGYTILLDITARDLQA 108
I +PR K V HE+ELA+I+ K NV E+ +D I G + LD+TAR++Q
Sbjct: 71 TNPGPIFIPRGVK-VHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQD 129
Query: 109 EARKKGYPWTVSKGFDTFAPIGPRIVDKRELD--PSDLE----IGLKVNGKVRQLGRTSE 162
EA+KKG PWT+SKGFDTF PI IV + + S+L+ + VNG++RQ G T+
Sbjct: 130 EAKKKGLPWTISKGFDTFMPIS-AIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNL 188
Query: 163 MIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKI 203
M+ + +++++IS++++LEPGDII TGTP GVG L+ GD++
Sbjct: 189 MLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRV 229
>pir||T50353 homolog to prokaryotic 2-hydroxyhepta-2,4-diene-1,7-dioate
isomerase [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|7106074|emb|CAB76045.1|
(AL157918) similar to prokaryotic
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
[Schizosaccharomyces pombe]
Length = 221
Score = 152 bits (380), Expect = 4e-36
Identities = 82/208 (39%), Positives = 125/208 (59%), Gaps = 5/208 (2%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELA 73
R K++ + +NYA H RE+ + P +P FLKP SA++ P ++ +EVEL
Sbjct: 4 RAGKVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELG 63
Query: 74 VIIGKRA---KNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIG 130
+I+ R + V + D I Y + +D+TAR++Q EA+KKG PW+ +KG+DTF P+G
Sbjct: 64 LIMKDRLPARRPVSSNSWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVG 123
Query: 131 PRIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGT 190
P I DP ++ + L +NGKV Q TS M+ KIP++ I+ M+L PGD++ TGT
Sbjct: 124 PIIPKHLIPDPHNVILELSLNGKVVQKDSTSLMLNKIPKIFSSITEAMSLNPGDLVLTGT 183
Query: 191 PPGVGPLRHGDKIEAWVEGIGVLEEEVI 218
P GVGP+ GD + A + + E+E+I
Sbjct: 184 PKGVGPVVPGDILSARL--LTAQEQEII 209
>pir||A83338 conserved hypothetical protein PA2471 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948521|gb|AAG05859.1|AE004674_9 (AE004674)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 232
Score = 152 bits (379), Expect = 5e-36
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 5/207 (2%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFL-KPPSALI----GPNSVIVLPRRSKRVDHEVE 71
++ + +NYA HAREMG +P EP F KP A++ G + P ++ +E+E
Sbjct: 26 RVYCVGRNYAAHAREMGFDPEREPPFFFCKPADAVVPVAAGSTLELAYPSQTGNYHYEIE 85
Query: 72 LAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGP 131
L IGK ++P E+A +++ GY + LD+T RDLQ R+ G PW + K FD APIGP
Sbjct: 86 LVAAIGKGGCDIPLEQAEEHVWGYAVGLDMTRRDLQMRMREMGRPWEIGKAFDRSAPIGP 145
Query: 132 RIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
+ P I L+V+G+ RQ ++I+ + E + Y+S L PGD++ TGTP
Sbjct: 146 LYPASQVGHPRHAAISLQVDGEDRQRSDIDQLIWSVAETVSYLSRFFELRPGDLVFTGTP 205
Query: 192 PGVGPLRHGDKIEAWVEGIGVLEEEVI 218
GVG + G+++ ++G+G L V+
Sbjct: 206 EGVGAVERGERMLGAIDGLGELSVRVV 232
>emb|CAC11884.1| (AL445065) probable 2-hydroxyhepta-2, 4-diene-1, 7-dioate isomerase
[Thermoplasma acidophilum]
Length = 315
Score = 152 bits (379), Expect = 5e-36
Identities = 90/215 (41%), Positives = 122/215 (55%), Gaps = 19/215 (8%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
+R KI+ + NY EHA+E + E P IF K ++IG I +P+ +K++D+E EL
Sbjct: 109 LRSGKILCIGVNYMEHAKESRQKVMEHPTIFCKFQDSIIGNMDDITVPKDAKQIDYEGEL 168
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPR 132
VIIG+ + + I GYTI D++ARDLQ + W + K TFAPIGP
Sbjct: 169 VVIIGRSSGTAESS-----IFGYTIGNDVSARDLQFRTSQ----WLLGKALPTFAPIGPV 219
Query: 133 IVDKRELD-PSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTP 191
IV K EL DL+I +VNG VRQ G TS+MIF + +++Y+S L PGDII TGTP
Sbjct: 220 IVGKNELGFARDLQIITRVNGTVRQNGNTSDMIFDVRAIVDYLSGYFNLGPGDIIFTGTP 279
Query: 192 PGV---------GPLRHGDKIEAWVEGIGVLEEEV 217
GV L+HGD I+ + GIG L +
Sbjct: 280 EGVILGLPENERVWLKHGDVIDVSITGIGTLTNRI 314
>sp|P37352|HPCE_ECOLI HOMOPROTOCATECHUATE CATABOLISM BIFUNCTIONAL ISOMERASE/DECARBOXYLASE
[INCLUDES: 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE
(HHDD ISOMERASE);
5-CARBOXYMETHYL-2-OXO-HEX-3-ENE-1,7-DIOATE DECARBOXYLASE
(OPET DECARBOXYLASE)] >gi|481224|pir||S38348
5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC
5.3.3.10) - Escherichia coli >gi|402576|emb|CAA52936.1|
(X75028) 5-carboxymethyl-2-hydroxymuconate
delta-isomerase [Escherichia coli]
Length = 405
Score = 146 bits (366), Expect = 2e-34
Identities = 78/178 (43%), Positives = 107/178 (59%), Gaps = 4/178 (2%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
+ AL NYA+HA E+ +PPEEP++FLK P+ L G N V P + + +E EL V+IG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78 KRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKR 137
K+A+NV A DY+ GYT+ D RD + P K D P+ IV K
Sbjct: 285 KQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYR---PNLRVKSRDGLTPMLSTIVPKE 341
Query: 138 EL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
+ DP +L + VNG++RQ G T+++IF +P LI Y+S MTL PGD+IATGTP G+
Sbjct: 342 AIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGL 399
Score = 80.8 bits (196), Expect = 1e-14
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 36 PPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGY 95
PP+ V F+KP + +IG I P+ + +A+I+GK A V E A +YI GY
Sbjct: 31 PPKTAVWFIKPRNTVIGCGEPIPFPQGENLLSGAT-VALIVGKTATKVREEDAAEYIAGY 89
Query: 96 TILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVR 155
+ D++ L E+ + P +K D F PIG + + +L I ++NG+
Sbjct: 90 ALANDVS---LPEESFYR--PAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPA 141
Query: 156 QLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEE 215
TS++ +L+ +S TL PGD I GTP ++ GD++ EG LE
Sbjct: 142 DHWNTSDLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRVRVLAEGFPPLEN 201
Query: 216 EVIAEDSI 223
V+ E +
Sbjct: 202 PVVDEREV 209
>pir||H72757 hypothetical protein APE0053 - Aeropyrum pernix (strain K1)
>gi|5103441|dbj|BAA78962.1| (AP000058) 293aa long
hypothetical protein [Aeropyrum pernix]
Length = 293
Score = 145 bits (361), Expect = 6e-34
Identities = 85/215 (39%), Positives = 125/215 (57%), Gaps = 17/215 (7%)
Query: 13 VRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
V P + ++YAEHAREMG ++ F KP ++L G + +V+P S++ D+E E+
Sbjct: 81 VSPVSAWGVGRSYAEHAREMGMS--KQIAFFSKPVTSLTGHLNPVVVPPVSEKPDYEGEI 138
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGP- 131
+IIGKR KN +A I GYT DIT R LQ W+++KG DT+ P+GP
Sbjct: 139 VIIIGKRIKNASTAEAGKAIAGYTAGADITDRLLQDMMS-----WSMAKGLDTYGPVGPV 193
Query: 132 -RIVDKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGT 190
I+D + D L + +NG+ Q G T +MI IP+++ +S++ TL PGDI+ TGT
Sbjct: 194 ATIIDSPD-DLDGLCVHTWLNGEKVQRGCTGDMIVSIPDMVSRLSALATLRPGDIVFTGT 252
Query: 191 PPGVGP-------LRHGDKIEAWVEGIGVLEEEVI 218
PPGVG LRHGD++E V G+ L +++
Sbjct: 253 PPGVGHARKPPRYLRHGDELEVRVSGLPPLRNQIV 287
>dbj|BAA25605.1| (D88014) homologous to HpcE (HHDD isomerase) protein of E. coli
[Rhodococcus erythropolis]
Length = 295
Score = 144 bits (360), Expect = 8e-34
Identities = 78/191 (40%), Positives = 112/191 (57%), Gaps = 4/191 (2%)
Query: 14 RPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELA 73
RP +I A+ NY +H E G PE P +F K P ++ GP + I LP S VD EVEL
Sbjct: 69 RPGQIFAVGVNYRDHVEESGLSLPEAPFVFTKFPGSITGPYNNIELPDGS--VDFEVELV 126
Query: 74 VIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRI 133
+IG+ A++V A +DY+ G T+ D++ R LQ +++ K + FAPIGP +
Sbjct: 127 AVIGRAARHVDASNGWDYVAGVTLGQDLSERQLQLSGPAP-QQFSLGKSYAGFAPIGPVL 185
Query: 134 VDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP 192
V E DP D+ + +++G Q RT +IF IPEL+ Y+SSI+ L PGD+I TGTP
Sbjct: 186 VTPDEFADPDDIGVSTRLSGDEMQNSRTRHLIFPIPELVAYLSSILPLSPGDLIFTGTPE 245
Query: 193 GVGPLRHGDKI 203
G+G R ++
Sbjct: 246 GIGWTREPKRL 256
>emb|CAA12268.1| (AJ224977) ORF 2 [Sphingomonas sp. RW5]
Length = 231
Score = 144 bits (360), Expect = 8e-34
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 1/195 (0%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSV-IVLPRRSKRVDHEVELAVI 75
+I + +NYAEHAREMG +P EP F + I P+ V + P + +E EL V
Sbjct: 25 RIFCVGRNYAEHAREMGRDPDREPPFFFTKWAETIVPSDVEVAYPSATANFHYEAELVVA 84
Query: 76 IGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVD 135
IG +++P E A D++ GY LD+T RDLQ +AR +G PW K + +P+G
Sbjct: 85 IGLEGRDIPVETALDHVFGYATGLDMTRRDLQLKARAEGRPWDTGKNVEQSSPLGLLHPV 144
Query: 136 KRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
S I L VNG+V+Q +++I+ + ++I ++S + L PGD+I TGTP GVG
Sbjct: 145 AECGHLSTGAISLTVNGEVKQSADLADLIWPVADIIAFLSGLYRLLPGDLIYTGTPAGVG 204
Query: 196 PLRHGDKIEAWVEGI 210
P+ GD+I+ ++G+
Sbjct: 205 PVVPGDEIDVRIDGL 219
>gi|11497711 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1)
[Archaeoglobus fulgidus] >gi|7448790|pir||C69261
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1)
homolog - Archaeoglobus fulgidus
>gi|2650557|gb|AAB91138.1| (AE001100)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1)
[Archaeoglobus fulgidus]
Length = 324
Score = 141 bits (352), Expect = 7e-33
Identities = 83/218 (38%), Positives = 129/218 (59%), Gaps = 16/218 (7%)
Query: 17 KIIALAKNYAEHAR----EMGSEPPEE----PVIFLKPPSALIGPNSVIVLPRRSKRVDH 68
K++ + EH R ++G P+E PV + P ++IGP ++ P ++ +D+
Sbjct: 105 KLMVDFSTFEEHVRMGFEKLGMSIPQEWYQVPVGYKMNPYSVIGPEEPVIWPSFTQILDY 164
Query: 69 EVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQ-AEARKKGYPWTVSKGFDTFA 127
E+E +++GKR KNV E A DY+LGYTI+ DI+ARD++ E + SK FD
Sbjct: 165 ELEFGIVVGKRGKNVSKEDAMDYVLGYTIVNDISARDMEFIELKAMPLGPLKSKDFDNAT 224
Query: 128 PIGPRIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDII 186
P+GP IV K E+ DP +L++ +VNG+V T +M +KIP+LI ++S T+ PG ++
Sbjct: 225 PMGPCIVTKDEIKDPHNLKMVARVNGEVWSEASTKDMHWKIPDLIAHLSKDQTIHPGTVM 284
Query: 187 ATGTPPG-----VGP-LRHGDKIEAWVEGIGVLEEEVI 218
+GTP G VG L+ GD +E +EGIGVL ++
Sbjct: 285 LSGTPGGGCGMHVGKLLKPGDVVELEIEGIGVLRNPIV 322
>gb|AAG39451.1| (AF173167) probable maleylpyruvate isomerase [Pseudomonas
alcaligenes]
Length = 287
Score = 136 bits (339), Expect = 2e-31
Identities = 80/215 (37%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 15 PTKIIALAKNYAEHAREMGSEPP----------EEPVIFLKPPSALIGPNSVIVLPR-RS 63
P KIIA NYA+H E + ++ +FLK S+ +GP+ I LP
Sbjct: 80 PGKIIAAPVNYADHLDESNQDKGINFGTEISLIDKYALFLKAGSSSVGPDEGISLPAVEG 139
Query: 64 KRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGF 123
+R DHEVELA++IGK + V ++A + GY I LDIT R + + +K F
Sbjct: 140 RRFDHEVELALVIGKETRRVTVDEALSSVAGYFIGLDITMRGTEDRSYRKS--------F 191
Query: 124 DTFAPIGPRIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEP 182
D+F +GP +V P + L VNG+ RQ T+++++ + ++I S TL P
Sbjct: 192 DSFTVMGPWLVTSDAFGSPEGVAFSLSVNGEQRQNANTNDLVWSVAKIISVASHAYTLYP 251
Query: 183 GDIIATGTPPGVGPLRHGDKIEAWVEGIGVLEEEV 217
GD+I TGTP GVGP++ GDKI A ++ IG +E V
Sbjct: 252 GDVILTGTPAGVGPIKAGDKISASIDRIGSMEVPV 286
>pir||B81094 isomerase, probable NMB1338 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7226582|gb|AAF41713.1|
(AE002482) isomerase, putative [Neisseria meningitidis
MC58]
Length = 218
Score = 131 bits (326), Expect = 8e-30
Identities = 68/194 (35%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
I + +NYA H E+ +E P EPV+F+KP +++ I+LP S+ V E EL +++G
Sbjct: 16 IFCIGRNYAAHIEELKNEIPSEPVVFMKPSGSILNSGGTILLPEFSRDVQFECELVLLVG 75
Query: 78 KRAKNVPAEK-AFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
K + K + GY + LD+TARD+Q ++KG PW +KGF A +
Sbjct: 76 KDSDGTGEGKDILGCVAGYGVGLDLTARDIQCRLKEKGLPWLKAKGFRHSACVSDFAAAG 135
Query: 137 RELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
R +P + LK NG ++Q G T MI+ I E++ +++ L GD++ TGTP GVG
Sbjct: 136 RIGNPEKVLFSLKQNGVLKQRGDTGLMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGA 195
Query: 197 LRHGDKIEAWVEGI 210
+ GD + ++G+
Sbjct: 196 IGAGDNLALELDGL 209
>gb|AAF49840.1| (AE003539) CG11251 gene product [Drosophila melanogaster]
Length = 338
Score = 129 bits (321), Expect = 3e-29
Identities = 79/215 (36%), Positives = 117/215 (53%), Gaps = 22/215 (10%)
Query: 15 PTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAV 74
P+KII + NY ++ E P EP +K S++ G I +K +D+ +LAV
Sbjct: 131 PSKIIGVDCNYVDNCDEQHISIPREPSFHVKFASSITGALDNIRAHSSAKHIDYGCQLAV 190
Query: 75 IIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKG---FDTFAPIGP 131
++GKR + V ++A +++ G+ ++ DI ARD W V G DTF P+GP
Sbjct: 191 VMGKRCREVSPKEALNHVFGFMVVQDIVARD-----------WNVPLGGHSMDTFLPLGP 239
Query: 132 RIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGT 190
IV + + D ++L I +NG+ RQ G T MIFKI LI +S +TL PGDII TGT
Sbjct: 240 TIVHRCHVPDLNNLWIKTIINGEERQTGNTRNMIFKIDFLIHRLSQYLTLCPGDIILTGT 299
Query: 191 PPGVGPLRH-------GDKIEAWVEGIGVLEEEVI 218
P G G RH GD IE+ ++ +G + +V+
Sbjct: 300 PAGSGAFRHPSCFLKPGDLIESEIQNLGKMCNKVV 334
>pir||T50940 DitD protein [imported] - Pseudomonas abietaniphila
>gi|4455075|gb|AAD21066.1| (AF119621) DitD [Pseudomonas
abietaniphila]
Length = 293
Score = 129 bits (320), Expect = 4e-29
Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 11/208 (5%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
++ + NY H + +GS PE P+ ++KP SAL+G + I P + ++D+EVEL +I
Sbjct: 69 RVFGVGLNYLSHLQHLGSTAPEHPLGYIKPESALVGASDDIQYPALTAQLDYEVELVAVI 128
Query: 77 GKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIV-- 134
+ + P A +LGYT DI+ARD A R K D P+GP +V
Sbjct: 129 ARALGDEPCASA--CLLGYTCGNDISARD--AGKRIGRLDLLTQKAMDRTTPVGPWVVTL 184
Query: 135 DKRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV 194
D+ + L+I L VN + RQ T +M+F I EL+ Y+ + +TL+PGD++ TG+ GV
Sbjct: 185 DEIGVGQPHLDIELSVNDECRQFDNTRQMLFPIDELLNYVDARITLQPGDLVFTGSTHGV 244
Query: 195 GP-----LRHGDKIEAWVEGIGVLEEEV 217
G L+ GD++E +EGIG + V
Sbjct: 245 GLEDGRFLQPGDRVEVRIEGIGSMSNRV 272
>pir||C81847 probable hydrolase NMA1552 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380193|emb|CAB84779.1|
(AL162756) putative hydrolase [Neisseria meningitidis
Z2491]
Length = 218
Score = 129 bits (320), Expect = 4e-29
Identities = 67/194 (34%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIG 77
I + +NYA H E+ +E P EPV+F+KP +++ I+LP S+ V E EL +++G
Sbjct: 16 IFCIGRNYAAHIEELKNEIPSEPVVFMKPSGSILNSGGTILLPEFSRDVQFECELVLLVG 75
Query: 78 KRAKNVPAEK-AFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
K + K + GY + LD+TARD+Q ++KG PW +KGF A +
Sbjct: 76 KDSDGTGEGKDILGCVAGYGVGLDLTARDIQCRLKEKGLPWLKAKGFRHSACVSDFAAAG 135
Query: 137 RELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
R +P ++ LK NG ++Q G T MI+ I E++ +++ L GD++ TGT GVG
Sbjct: 136 RIGNPENVLFSLKQNGVLKQRGDTGLMIYPIREILHKLAADYGLGKGDLVFTGTSSGVGA 195
Query: 197 LRHGDKIEAWVEGI 210
+ GD + ++G+
Sbjct: 196 IGAGDNLALELDGL 209
>gb|AAC69614.1| (AF061446) unknown [Chromobacterium violaceum]
Length = 138
Score = 123 bits (306), Expect = 2e-27
Identities = 58/115 (50%), Positives = 79/115 (68%)
Query: 9 GYYEVRPTKIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDH 68
G + +R I + +NYA HA E+G++ +EP++FLKP SAL+ +S I LP S V H
Sbjct: 7 GLHAIRVGNIFCIGRNYAAHAAELGNKVEDEPLVFLKPTSALLDESSPIRLPEYSGDVHH 66
Query: 69 EVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGF 123
E EL +IGK ++P EKA D++ GY I LD+TARD QAEA++KG PWT +KGF
Sbjct: 67 ECELVALIGKGGDDIPPEKALDHVAGYGIGLDLTARDAQAEAKRKGQPWTKAKGF 121
>dbj|BAA36035.1| (D90753) ZK688.3 protein [Escherichia coli]
Length = 160
Score = 122 bits (304), Expect = 3e-27
Identities = 64/152 (42%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 59 LPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWT 118
+P V HEVELAV+IG + E I GY + LD+T RD+Q + +K G PW
Sbjct: 1 IPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWE 60
Query: 119 VSKGFDTFAPIGPRIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSI 177
+K FD P+ I DP + + L VNG+ RQ G T++MI KI LI Y+S
Sbjct: 61 KAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKF 120
Query: 178 MTLEPGDIIATGTPPGVGPLRHGDKIEAWVEG 209
TL+ GD++ TGTP GVGPL+ GD++ +G
Sbjct: 121 FTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 152
>emb|CAA73581.1| (Y13118) ORF1 [Sphingomonas sp.]
Length = 216
Score = 122 bits (302), Expect = 5e-27
Identities = 78/217 (35%), Positives = 119/217 (53%), Gaps = 16/217 (7%)
Query: 15 PTKIIALAKNYAEHAR-EMG-SEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVEL 72
P ++ A+ NY +HA E G E P P+IF K P+ + GP + LP + VD E+EL
Sbjct: 2 PRQVFAVGLNYRDHALGEAGLKELPTSPLIFTKFPTCIAGPYDDLPLPVGN--VDWEIEL 59
Query: 73 AVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYP-WTVSKGFDTFAPIGP 131
+IG RA V E A D++ GY + D + R +Q G P +++ K F F P GP
Sbjct: 60 VAVIGTRASRVSVEDALDHVAGYAVGQDFSERLMQLSG---GMPQFSLGKSFPGFGPFGP 116
Query: 132 RIVDKRELDPSD-LEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGT 190
+V LD ++ L + VNG Q TS++IF + +L+ +S + TL PGD+I TGT
Sbjct: 117 WLVTLDALDETNGLAVECTVNGVKVQGSDTSQLIFPVNDLVSRLSHVCTLLPGDVIFTGT 176
Query: 191 PPGVGPLRH-------GDKIEAWVEGIGVLEEEVIAE 220
P GVG R+ GD++ + + IG +++ +A+
Sbjct: 177 PAGVGNARNPKWFLKPGDEVVSTIAQIGSIKQTCVAD 213
>emb|CAA73583.1| (Y13118) ORF2 [Sphingomonas sp.]
Length = 190
Score = 120 bits (299), Expect = 1e-26
Identities = 65/173 (37%), Positives = 96/173 (54%), Gaps = 1/173 (0%)
Query: 38 EEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTI 97
E P F K S + S I P + +E+EL V IGK+A + +A I G+
Sbjct: 8 EAPFYFNKAASTFVASGSTIPYPPGTSNYHYEMELVVAIGKQAFQISEAEAGSIIYGFAC 67
Query: 98 LLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQL 157
LD+T RDLQ AR+KG PW + K F+ A + P I + + I L VNG+++Q
Sbjct: 68 GLDMTRRDLQLVAREKGRPWDLGKDFEQSAVVAP-ITKAAQFAIENQRISLSVNGEIKQD 126
Query: 158 GRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGI 210
+++++ +PELI +S L PGD+I TGTP GVGP+ GD +E ++G+
Sbjct: 127 QVLADLVWSVPELIADLSRFYHLAPGDLIFTGTPAGVGPVVAGDTLEGTIDGL 179
>pir||F83131 conserved hypothetical protein PA4121 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950324|gb|AAG07508.1|AE004828_9 (AE004828)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 219
Score = 117 bits (291), Expect = 1e-25
Identities = 65/187 (34%), Positives = 109/187 (57%), Gaps = 6/187 (3%)
Query: 35 EPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILG 94
+PP +PV+F+K P+ ++ ++ PR +R+ L V+I + A V E+A ++ G
Sbjct: 38 KPPVKPVLFIKTPNTRNEHDAPVLFPRGVERLQPGPALGVVIARDASRVKEEEAMAHVAG 97
Query: 95 YTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKREL-DPSDLEIGLKVNGK 153
Y I+ + + L ++ + P +K D F P+GP++V +E+ DP LE+ L VNG+
Sbjct: 98 YVIVNEFS---LPEDSYYR--PAVKAKCRDGFCPLGPQLVPVQEIVDPHALELKLYVNGE 152
Query: 154 VRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGIGVL 213
+RQ T+ ++ IP LI IS MTL GD++ TGTP G + GD++E ++G+G L
Sbjct: 153 LRQRNNTANLVRDIPRLIAEISEFMTLHAGDVLITGTPEGRVDVHPGDRVEVEIDGLGRL 212
Query: 214 EEEVIAE 220
++AE
Sbjct: 213 ANSIVAE 219
>dbj|BAB04790.1| (AP001510) unknown conserved protein in others [Bacillus
halodurans]
Length = 206
Score = 115 bits (284), Expect = 6e-25
Identities = 62/188 (32%), Positives = 103/188 (53%), Gaps = 5/188 (2%)
Query: 18 IIALAKNYAEHAREMGSEPPEEPVIFLKPPSAL-IGPNSVIVLPRRSKRVDHEVELAVII 76
I + +NYA+HARE+G+ P++P++F KP +L I ++ P + HE+E+ + I
Sbjct: 6 IYCIGRNYADHARELGNAIPDKPILFSKPTHSLTIANGQMLEFPSNRGEIHHELEIVLHI 65
Query: 77 GKR-AKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVD 135
GK K + E+ D + + +D T RD Q E +KKG+PW +KGF A +
Sbjct: 66 GKPYEKGISLEELVDVM---ALGIDFTLRDEQNELKKKGHPWLRAKGFKHAAVVTDFWSF 122
Query: 136 KRELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG 195
E + L ++ +V Q G +M+F +++E + L GD++ TGTP GVG
Sbjct: 123 PGEETCKATDFSLLIHDQVVQKGNIQQMLFSFEQMVEEVGEAFGLGEGDLLFTGTPEGVG 182
Query: 196 PLRHGDKI 203
P++ GD++
Sbjct: 183 PIQSGDQL 190
>gb|AAD12620.1| (AF036940) fumarylpyruvate hydrolase [Ralstonia sp. U2]
Length = 192
Score = 114 bits (282), Expect = 1e-24
Identities = 64/173 (36%), Positives = 93/173 (52%), Gaps = 1/173 (0%)
Query: 38 EEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTI 97
E+ F K P L+ + + P R+ +E+EL + IGK V ++A + I GY
Sbjct: 10 EQAFYFTKSPQTLVESGATVAYPPRTSNYHYEMELVLAIGKPGFRVSEDQAHELIYGYAA 69
Query: 98 LLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDPSDLEIGLKVNGKVRQL 157
LD+T RDLQ AR KG PW K + + IV + + I L+VNG+ +Q
Sbjct: 70 GLDMTRRDLQLVARDKGRPWDTGKDIEE-GSVCSEIVPMQGVVVEQGAIALEVNGQTKQS 128
Query: 158 GRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGI 210
++I+ + E+I +S+ L+PGD+I TGTP GVG + GDKI VEGI
Sbjct: 129 SNVDKLIWNVREIIADLSTYYHLQPGDLIYTGTPEGVGAVVAGDKIIGRVEGI 181
>pir||A82389 conserved hypothetical protein VCA1004 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658447|gb|AAF96900.1|
(AE004427) conserved hypothetical protein [Vibrio
cholerae]
Length = 204
Score = 101 bits (248), Expect = 1e-20
Identities = 58/186 (31%), Positives = 95/186 (50%), Gaps = 16/186 (8%)
Query: 17 KIIALAKNYAEHAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVII 76
K++ + +NY EH +E+ + PE+ V+F KP SA+ + + +E E+ ++
Sbjct: 15 KVLCVGRNYVEHIQELHNSIPEQMVLFHKPSSAVTSQLRAF----HQEPLHYEAEICFLV 70
Query: 77 GKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDK 136
K + I LD+T R +Q+ + KG PW +K FD A + R V
Sbjct: 71 EK-----------GQYVAVGIGLDLTKRQMQSYLKSKGLPWERAKAFDGAAVLS-RFVAL 118
Query: 137 RELDPSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGP 196
LD DL + L +N Q G S+M++ +++ + S +TLE GD++ TGTP GVG
Sbjct: 119 DGLDADDLNLELLINSVRVQKGHVSQMLYSPQAVLQELKSYLTLEDGDVVMTGTPQGVGE 178
Query: 197 LRHGDK 202
+ GD+
Sbjct: 179 VHQGDR 184
>pir||H81417 hypothetical protein Cj0021c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967526|emb|CAB72514.1|
(AL139074) hypothetical protein Cj0021c [Campylobacter
jejuni]
Length = 292
Score = 100 bits (247), Expect = 1e-20
Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 18 IIALAKNYAEHAREMGS------EPPEEPVIFLKPPSALIGPNSVIVLPRR-SKRVDHEV 70
II L N+ +HA+E E E PV F K + P I L + ++D+E
Sbjct: 77 IICLGINFLDHAKESAKFKGEKFEEREYPVYFGKRCNQATAPFGDIPLHADVTSQLDYEC 136
Query: 71 ELAVIIGKRAKNVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIG 130
ELA I+ K A + A+ A DYI GYTI+ +I+AR+LQ K+ + +K + +G
Sbjct: 137 ELAFILSKDAYKIKAKDAKDYIFGYTIINEISARELQ----KRHKQFYRAKSLEGSTIMG 192
Query: 131 PRIVDKRELD-PSDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATG 189
P I E+ P L++ VN ++RQ T IF I ++E +S+ M L+ G II+ G
Sbjct: 193 PYITSVDEISYPPKLQLQSYVNDELRQNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMG 252
Query: 190 TPPGVGP-------LRHGDKIEAWVEGIGVL 213
TP GVG L+ GDK+ +E +G L
Sbjct: 253 TPSGVGMGLNPPTFLKSGDKVRCVIENLGEL 283
>pir||T50935 isomerase/decarboxylase homolog DitH [imported] - Pseudomonas
abietaniphila >gi|4455079|gb|AAD21070.1| (AF119621) DitH
[Pseudomonas abietaniphila]
Length = 336
Score = 99.8 bits (245), Expect = 2e-20
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 39 EPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTIL 98
+P+ + A+IG + + P SK +D E+E IGK+ K++ + A D+I+G+TI
Sbjct: 140 QPIYYKCNRFAVIGADDEFLWPAFSKALDFELEFGCYIGKKGKDISRDNARDHIVGFTIF 199
Query: 99 LDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKREL-DPSDLEIGLKVNGKVRQL 157
D++ARD QA SK FDT +GP +V EL DP DL + +VNG+
Sbjct: 200 NDMSARDAQAAEMPGMLGPAKSKDFDTANIMGPCLVTADELGDPYDLNMVARVNGEEWGR 259
Query: 158 GRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPP---GVGPLRH---GDKIEAWVEGI 210
G T +M ++ ++I +IS TL PG+ + +GT G+ LR+ GD++E V+GI
Sbjct: 260 GNTRDMRWRFEDVIAHISRSETLYPGEFLGSGTVGNGCGLEQLRYLKPGDRVELEVDGI 318
>gb|AAK42651.1| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1) [Sulfolobus
solfataricus]
Length = 318
Score = 98.7 bits (242), Expect = 5e-20
Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 13/200 (6%)
Query: 30 REMGSEPPEE----PVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPA 85
+ G PEE P+ + P+ G + P+ SK VD E+E+A II KR K++
Sbjct: 117 KRRGQPIPEEWFRIPIYYKGDPAIFYGHLEEVPWPKYSKLVDIELEIAAIIYKRGKDIDK 176
Query: 86 EKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKREL-DPSDL 144
+A DYILG+TI D +ARD+Q A KG +KG D +GP IV K EL D L
Sbjct: 177 IRARDYILGFTIFNDFSARDIQM-AEMKGL-LGPAKGKDFANGLGPWIVTKDELSDIKGL 234
Query: 145 EIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPG-----VG-PLR 198
+ KVN ++ + +M + ++I Y+S + PGD+ +GT G +G L+
Sbjct: 235 RVYAKVNNEIWCDTKAEDMQWSFEDMIAYVSQDEYIRPGDVFGSGTVSGCTGLDIGKSLK 294
Query: 199 HGDKIEAWVEGIGVLEEEVI 218
IE +VE IG+L+ ++
Sbjct: 295 PNSSIELYVEKIGILKNIIV 314
>pir||C70585 hypothetical protein Rv0939 - Mycobacterium tuberculosis (strain
H37RV) >gi|3261756|emb|CAB08493.1| (Z95209) hypothetical
protein Rv0939 [Mycobacterium tuberculosis]
Length = 644
Score = 85.8 bits (209), Expect = 4e-16
Identities = 65/198 (32%), Positives = 94/198 (46%), Gaps = 23/198 (11%)
Query: 40 PVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRAKNVPAEKAFDYILGYTILL 99
P + PS ++GP S D E+E+A +IG K++ E+A I+GYTI
Sbjct: 105 PAFYFACPSTVLGPYDDAPTAPGSAWQDFELEIAAVIGTSGKDLTVEQAERSIIGYTIFN 164
Query: 100 DITARDLQ-AEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDP------SDLEIGLKVNG 152
D +ARDLQ E + + +KG D+ +GP +V EL+P L + VNG
Sbjct: 165 DWSARDLQMLEGQLR---IGQAKGKDSGITLGPYLVTPDELEPYCRGGKLSLRVIALVNG 221
Query: 153 KVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGV-------------GPLRH 199
V G T++M + E+I Y S +TL PGD+ +GT P G L
Sbjct: 222 TVIGSGSTAQMDWSFGEVIAYASRGVTLTPGDVFGSGTVPTCTLVEHLRPPESFPGWLHD 281
Query: 200 GDKIEAWVEGIGVLEEEV 217
GD + VEG+G + V
Sbjct: 282 GDVVTLQVEGLGETRQTV 299
>gb|AAB58814.1| (U38978) homolog to 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
Method: conceptual translation supplied by author.
[naphthalenesulfonate-degrading bacterium BN6]
Length = 144
Score = 81.5 bits (198), Expect = 8e-15
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 82 NVPAEKAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRIVDKRELDP 141
++ + A +I+ Y++ D + RD Q + + WTV K FD GP +V EL
Sbjct: 1 DISKDDALSHIVAYSVFNDGSIRDYQLKTPQ----WTVGKNFDDTGAFGPWLVTADELPA 56
Query: 142 --SDLEIGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVG---- 195
+ L+I ++NG+V Q TS+M+F + + + +S+ TLE GD++ GTP G+G
Sbjct: 57 GGAGLKIETRLNGQVVQSANTSDMVFDVVDTVALLSTCFTLEAGDVLVMGTPSGIGLARK 116
Query: 196 -PL--RHGDKIEAWVEGIGVLEEEVIA 219
PL + GD E +E IG+L + A
Sbjct: 117 PPLFMKDGDVCEVEIEKIGLLVNPIKA 143
>dbj|BAA87171.1| (AB027867) Hypothetical protein [Schizosaccharomyces pombe]
Length = 114
Score = 80.4 bits (195), Expect = 2e-14
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 30 REMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDHEVELAVIIGKRA---KNVPAE 86
RE+ + P +P FLKP SA++ P ++ +EVEL +I+ R + V +
Sbjct: 1 RELNNPFPTKPFFFLKPTSAIVEPGHGNLIIPPDVSAHYEVELGLIMKDRLPARRPVSSN 60
Query: 87 KAFDYILGYTILLDITARDLQAEARKKGYPWTVSKGFDTFAPIGPRI 133
D I Y + +D+TAR++Q EA+KKG PW+ +KG+DTF P+GP I
Sbjct: 61 SWLDSIGAYFVGIDMTARNIQNEAKKKGLPWSFAKGYDTFLPVGPII 107
>gb|AAK43045.1| 2-hydroxyhepta-2 ,4-diene-1,7-dioate isomerase (hpcE-3) [Sulfolobus
solfataricus]
Length = 288
Score = 79.6 bits (193), Expect = 3e-14
Identities = 63/199 (31%), Positives = 94/199 (46%), Gaps = 23/199 (11%)
Query: 13 VRPTKIIALAKNYAE----HAREMGSEPPEEPVIFLKPPSALIGPNSVIVLPRRSKRVDH 68
++P+ II N + + + E + P F+K P+ I I+ P + R
Sbjct: 50 IQPSAIICTLVNSPKMVGVNDKNEAKEMVKSPKFFIKLPTVAIAHRQPIISPPDAIRP-- 107
Query: 69 EVELAVIIGKRAKNVPAEKAFDYILGYTILLDIT-----ARDLQAEARKKGYPWTVSKGF 123
EVE+ VI + K+V YILGYT+ DIT D R+ V K
Sbjct: 108 EVEIGVITRFKMKDVSRSDVKKYILGYTVFNDITYPPGLKEDSYYAMRRDPTDGNVKKLL 167
Query: 124 -----------DTFAPIGPRIVDKREL-DPSDLEIGLKVNGKVRQLGRTSEMIFKIPELI 171
DTFAPIGP IV + E+ D + L + NG++ Q G +SE IF I E++
Sbjct: 168 MRGTHFRNKVRDTFAPIGPYIVTEEEIGDVNSLRMRSYYNGELVQDGYSSEFIFSIEEIL 227
Query: 172 EYISSIMTLEPGDIIATGT 190
+S I+T+ P +I+TG+
Sbjct: 228 SELSKIVTIPPFSVISTGS 246
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91844096
Number of Sequences: 2977
Number of extensions: 4026116
Number of successful extensions: 7907
Number of sequences better than 1.0e-10: 63
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7735
Number of HSP's gapped (non-prelim): 66
length of query: 225
length of database: 189,106,746
effective HSP length: 53
effective length of query: 172
effective length of database: 157,386,935
effective search space: 27070552820
effective search space used: 27070552820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)