BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1452 (PAB1452) DE:Hypothetical protein
(404 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (st... 822 0.0
pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (st... 189 5e-47
emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfat... 170 3e-41
gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus sol... 170 3e-41
sp|Q58267|Y857_METJA HYPOTHETICAL PROTEIN MJ0857 >gi|2128545|pir... 164 2e-39
gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfa... 161 1e-38
gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solf... 159 7e-38
pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (st... 108 1e-22
gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfat... 84 3e-15
sp|P81315|Y85A_METJA HYPOTHETICAL PROTEIN MJ0856.1 >gi|2826339|g... 82 9e-15
gb|AAK43048.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 74 3e-12
gb|AAK41334.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 72 1e-11
gb|AAK41436.1| Transposase ISC1316 [Sulfolobus solfataricus] 71 2e-11
gb|AAK41882.1| Transposase ISC1316 [Sulfolobus solfataricus] 71 2e-11
gb|AAK41577.1| Transposase ISC1316 [Sulfolobus solfataricus] 71 2e-11
gb|AAK41574.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 71 3e-11
sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir... 71 3e-11
gb|AAK42898.1| Transposase ISC1316 [Sulfolobus solfataricus] 70 5e-11
gb|AAK41463.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 69 7e-11
gb|AAK41873.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 69 9e-11
gb|AAK42892.1| Transposon ISC1316 [Sulfolobus solfataricus] 69 9e-11
gb|AAK43254.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 69 9e-11
gb|AAK43271.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 69 9e-11
>pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (strain Orsay)
>gi|5458814|emb|CAB50301.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 404
Score = 822 bits (2099), Expect = 0.0
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK
Sbjct: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK
Sbjct: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
Query: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR
Sbjct: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
Query: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR
Sbjct: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
Query: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD
Sbjct: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
Query: 301 ALRRRVFNCPVCGFSMDRDFVAVLNLLGLFPFSPKANEPLAEDPVGLMMLVVEANLLHHR 360
ALRRRVFNCPVCGFSMDRDFVAVLNLLGLFPFSPKANEPLAEDPVGLMMLVVEANLLHHR
Sbjct: 301 ALRRRVFNCPVCGFSMDRDFVAVLNLLGLFPFSPKANEPLAEDPVGLMMLVVEANLLHHR 360
Query: 361 NALIIATKTGAGGNGKKNIILAWDLDDFKSLNNVRVNPKSAVPD 404
NALIIATKTGAGGNGKKNIILAWDLDDFKSLNNVRVNPKSAVPD
Sbjct: 361 NALIIATKTGAGGNGKKNIILAWDLDDFKSLNNVRVNPKSAVPD 404
>pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (strain Orsay)
>gi|5457838|emb|CAB49328.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 429
Score = 189 bits (475), Expect = 5e-47
Identities = 120/339 (35%), Positives = 188/339 (55%), Gaps = 25/339 (7%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+P+HY YTVCQDAVTRAKSFL+ K++G + E P V+ VS+WLDD LW
Sbjct: 66 LPSHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLW------------ 113
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
+ IR++T KG I++ L+ HK ++K +N WK+ +++L + ER+++ + VF K
Sbjct: 114 -RAGLTFIRIATHKGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVFLVFYK 172
Query: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
+ E + S++ +D N DN++ + T+ KIT Y R+++Q+ W +
Sbjct: 173 DVREYK-AKSWIPIDVNEDNVTALIDFKPVIFETNQKKITLGYYYRRKKVQEK----WDK 227
Query: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
KL S G+K R+++++ D++ K AK +VE A+ NA IVLE +PKN +++ +
Sbjct: 228 KLGSRNGKKRRILGKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEK 287
Query: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
K+ LR ++ G Q+ + KA E+ VPV+ V+P SS++CP A VK +
Sbjct: 288 VSNKQ--LRHRIYQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAV-VKYESG 344
Query: 301 ALRRRVFNCPVCGFSMDRDFVAVLNLLGLFPFSPKANEP 339
R C V G RD +AV NL P S +N P
Sbjct: 345 ----RFGVCSVGGEVWHRDILAVWNLYLRAPQSDGSNAP 379
>emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 371
Score = 170 bits (426), Expect = 3e-41
Identities = 107/326 (32%), Positives = 178/326 (53%), Gaps = 28/326 (8%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+P+HY YT C+DA R SF +LKK+G+ T++P V+RV++ LDD LW +
Sbjct: 46 LPSHYIYTACEDASERLDSFNKLKKRGRSYTDRPSVRRVTVHLDDHLWKF---------- 95
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
+ +I ++T++GR+ +S K+F++Y N+ W + G + +L+ + V + VF+K
Sbjct: 96 ---SLNVISIATKRGRVCISPIFPKIFWRYYNDNWLIASGARFKLL-KGNVVEFFIVFKK 151
Query: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
+ + +P G F+ VD N D++S+ + I + T+ IT Y RR I
Sbjct: 152 DVKSYDPRG-FIPVDLNEDSVSVLINGKPILLETNTRMITLGYEYKRRSITNGR------ 204
Query: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
S K R++ K R+R++++D++ KFAK +V+ A + IVLE++P+ + + +
Sbjct: 205 ---STKDREVRRKL--RERDKKLDVRRKFAKLIVKEAFGSRSAIVLEDLPRGVPEHMVKG 259
Query: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
K K+ LR ++ + + ++EKA EF VPV+ V PSY+S ICP G+ + D
Sbjct: 260 VKDKQLRLR--IYRSAFSSMKNAIVEKAREFGVPVILVDPSYTSSICPVHGSKIIYQPDG 317
Query: 301 ALRRRVFNCPVCGFSMDRDFVAVLNL 326
RV C G RD VA+ NL
Sbjct: 318 GSAPRVGVCGKGGERWHRDVVALYNL 343
>gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus solfataricus]
Length = 371
Score = 170 bits (426), Expect = 3e-41
Identities = 107/326 (32%), Positives = 178/326 (53%), Gaps = 28/326 (8%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+P+HY YT C+DA R SF +LKK+G+ T++P V+RV++ LDD LW +
Sbjct: 46 LPSHYIYTACEDASERLDSFNKLKKRGRSYTDRPSVRRVTVHLDDHLWKF---------- 95
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
+ +I ++T++GR+ +S K+F++Y N+ W + G + +L+ + V + VF+K
Sbjct: 96 ---SLNVISIATKRGRVCISPIFPKIFWRYYNDNWLIASGARFKLL-KGNVVEFFIVFKK 151
Query: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
+ + +P G F+ VD N D++S+ + I + T+ IT Y RR I
Sbjct: 152 DVKSYDPRG-FIPVDLNEDSVSVLINGKPILLETNTRMITLGYEYKRRSITNGR------ 204
Query: 181 KLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARR 240
S K R++ K R+R++++D++ KFAK +V+ A + IVLE++P+ + + +
Sbjct: 205 ---STKDREVRRKL--RERDKKLDVRRKFAKLIVKEAFGSRSAIVLEDLPRGVPEHMVKG 259
Query: 241 RKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDD 300
K K+ LR ++ + + ++EKA EF VPV+ V PSY+S ICP G+ + D
Sbjct: 260 VKDKQLRLR--IYRSAFSSMKNAIVEKAREFGVPVILVDPSYTSSICPVHGSKIIYQPDG 317
Query: 301 ALRRRVFNCPVCGFSMDRDFVAVLNL 326
RV C G RD VA+ NL
Sbjct: 318 GSAPRVGVCGKGGERWHRDVVALYNL 343
>sp|Q58267|Y857_METJA HYPOTHETICAL PROTEIN MJ0857 >gi|2128545|pir||A64407 hypothetical
protein MJ0857 - Methanococcus jannaschii
>gi|1591542|gb|AAB98863.1| (U67529) M. jannaschii
predicted coding region MJ0857 [Methanococcus
jannaschii]
Length = 274
Score = 164 bits (411), Expect = 2e-39
Identities = 83/177 (46%), Positives = 111/177 (61%), Gaps = 5/177 (2%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQ----- 55
+PTHY YT QDA TR KSF+ +KK+ K T KP +K +SLWLDDVL +Y+ F
Sbjct: 70 LPTHYIYTASQDASTRIKSFIAMKKRDKAYTSKPKIKNISLWLDDVLTNYRDFKNNIEKL 129
Query: 56 FNTLKNGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAY 115
F K G+K L +RLST GRI + LKPHK FFK LNEGW +K G KLRL +E+ +
Sbjct: 130 FLIDKEGKKTLHLRLSTPNGRIVIPLKPHKQFFKLLNEGWGIKAGFKLRLNKEDGTITVL 189
Query: 116 FVFEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQK 172
EKE + + ++D+N DNI+ G E + ++TDLGK+T Y+N+ IQ+
Sbjct: 190 IPLEKEITINDSYKTVYALDFNLDNITYGNFENIELIKTDLGKLTEKYSNIMTNIQE 246
>gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 410
Score = 161 bits (404), Expect = 1e-38
Identities = 108/327 (33%), Positives = 174/327 (53%), Gaps = 26/327 (7%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+P+HY YT C+DA R SF +LKK+G+ TEKP V+RV++ LDD LW +
Sbjct: 63 LPSHYIYTACEDASERLDSFEKLKKRGRSYTEKPSVRRVTIHLDDHLWKF---------- 112
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
+ I +ST++ RI +S K+F++Y N W++ + RL+ + V Y +F++
Sbjct: 113 ---NLDTISISTKRSRILISPTFPKIFWRYYNTEWRIASEARFRLM-KGNVVEFYVIFKR 168
Query: 121 EFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRR 180
+ + +F+ VD N +++S+ + + + T+ KIT Y R+ I
Sbjct: 169 DEPKPYEPKAFIPVDLNENSVSVLINSKPLLLETNTKKITLGYEYRRKAITTG------- 221
Query: 181 KLPSNKGRKLLEKFGR-RKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVAR 239
S K R++ K R R+RN++VD++ K AK +V+ A + IVLE++P+ + + +
Sbjct: 222 --KSTKDREVRRKLKRLRERNKKVDIRRKLAKLIVKEAFESRSAIVLEDLPRRTPEHMIK 279
Query: 240 RRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDD 299
K K+ LR ++ + + ++EKA EF VPVV V+PSY+S +CP GA V D
Sbjct: 280 DVKDKQLRLR--IYRSAFSSMKNAIIEKAREFGVPVVLVNPSYTSTVCPIHGANIVYQLD 337
Query: 300 DALRRRVFNCPVCGFSMDRDFVAVLNL 326
RV C RD VA+ NL
Sbjct: 338 GGDAPRVGVCEKGKEKWHRDVVALYNL 364
>gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 408
Score = 159 bits (397), Expect = 7e-38
Identities = 110/329 (33%), Positives = 178/329 (53%), Gaps = 30/329 (9%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+P+HY YT C+DA R SF +LK++G+ TEKP V+RV++ LDD LW +FN +
Sbjct: 63 LPSHYIYTACEDASERLDSFEKLKRRGRSYTEKPSVRRVTIHLDDHLW------KFNLDR 116
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEK 120
I +ST++ RI +S K+F++Y N+GW++ + +L+ + V+ ++V K
Sbjct: 117 -------ISISTKRSRILISPTFPKIFWRYYNKGWRIASEARFKLL--KGNVVEFYVIFK 167
Query: 121 EFEEQ--EPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGW 178
E + EP G F+SVD N +++S+ + + T+ +IT Y R+ I
Sbjct: 168 RDEPKPYEPKG-FISVDLNENSVSVLVDGKPMLLETNTKRITLGYEYRRKAITTG----- 221
Query: 179 RRKLPSNKGRKLLEKFGR-RKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKV 237
S K R++ K R R+RN++VD++ K AK +V+ A + IVLE++P+ + +
Sbjct: 222 ----KSTKDREVRRKLKRLRERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHM 277
Query: 238 ARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKP 297
+ K + LR ++ + + ++EKA EF VPVV V+PS++S +CP G V
Sbjct: 278 IKDVKDSQLRLR--IYRAAFSSMKNAIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQ 335
Query: 298 DDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
D RV C RD VA+ NL
Sbjct: 336 LDGGDAPRVGVCEKGKEKWHRDVVALYNL 364
>pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (strain Orsay)
>gi|5458261|emb|CAB49750.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 414
Score = 108 bits (268), Expect = 1e-22
Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 46/360 (12%)
Query: 4 HYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLKNGR 63
HY + + KS+ +KGK + KP +++ +++ L+ K F
Sbjct: 70 HYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLFTLKGF---------- 118
Query: 64 KILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEKEFE 123
IL I + R+ ++++L + L E W + + ++ VL + + FE
Sbjct: 119 -ILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFE 177
Query: 124 EQEPTGSFLSVDYNADNISL--GTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRRK 181
++ ++S+D N N+++ G + + R +L I R Y R++IQ + W ++
Sbjct: 178 PRD----WMSIDINLTNVTVLAGLTVYRFDTR-ELYHIHRVYELKRQKIQG--ISAWNKR 230
Query: 182 LPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARRR 241
L KLL+K+ R++NR D K A ++V +A+ I+LE++ + R
Sbjct: 231 L----SEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDL-----NGIKERV 281
Query: 242 KRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDDA 301
K L L + QR + KA F VPVV+V+P SSK CP CG + +
Sbjct: 282 LGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEG-- 339
Query: 302 LRRRVFNCPVCGFSMDRDFVAVLNL-----------LGLFPFSPKANEPLAEDPVGLMML 350
R+ C CG DRDF+AVLNL L + S P+ +P G+M +
Sbjct: 340 ---RLMKCLKCGLVEDRDFIAVLNLRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAI 396
>gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 382
Score = 83.9 bits (204), Expect = 3e-15
Identities = 71/238 (29%), Positives = 118/238 (48%), Gaps = 23/238 (9%)
Query: 94 GWKVKPGVKLRLIEEERKVLAYFVFEKEFEEQEPTGSFLSVDYNADNISLGTSEF-LIQV 152
GWK+K + RL+ + K VFEKE ++ EP S ++VD N + +G + +++
Sbjct: 146 GWKMK---EARLVIRDDKAFLKVVFEKEEQKVEPKES-IAVDINMAEVVVGKDDKNYVRI 201
Query: 153 RTDLGKITRFYTNVRREIQKSHLVGWRRKLPSNKGRKL--LEKFGRRKRNRRVDLQGKFA 210
T L ++ + + R ++K + R+ NK R L + F + R D K
Sbjct: 202 PTRLEEVHHWKSLAERLLKK-----YPRRWRENK-RILYRVRSFHLKARRIMEDFARKVG 255
Query: 211 KRLVELAKVLNATIVLEEVPKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVE 270
K +V++AK + ++ E KN + V ++ K RD L+ + Q ++ +A +
Sbjct: 256 KWVVDVAKRMGVNVIKLESLKNLIKSV----EKLSKEFRDKLYLMQYRRLQYWISWQAKK 311
Query: 271 FNVPVVFVSPSYSSKICPGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLLG 328
+ V FV+PSYSS CP CG V+ + R F C CG+ DRD +A++NL G
Sbjct: 312 RGMTVEFVNPSYSSVSCPKCGKRMVE-----VSHRWFKCS-CGYENDRDVIAIMNLNG 363
>sp|P81315|Y85A_METJA HYPOTHETICAL PROTEIN MJ0856.1 >gi|2826339|gb|AAB98861.1| (U67529)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 109
Score = 82.3 bits (200), Expect = 9e-15
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Query: 252 LHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGA----FNVKPDDDALRRRVF 307
+HNI F ++ K +EF V V+ +P+Y+S CP CG+ D+ AL R+
Sbjct: 1 MHNISAKKFLGYLKNKCLEFGVKVIEGNPAYTSIKCPNCGSRLSQLYKLADERALPSRLM 60
Query: 308 NCPVCGFSMDRDFVAVLNLL----GLFPFSPKANEPLAEDPV 345
C CGF DRD VAV NL+ GL+PFSPK+NEP+AE V
Sbjct: 61 YCFDCGFYADRDTVAVFNLIKRFTGLYPFSPKSNEPIAEGTV 102
>gb|AAK43048.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 424
Score = 73.7 bits (178), Expect = 3e-12
Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 55/333 (16%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP VK+ + + L
Sbjct: 88 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTL------------- 134
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++PH+ ++ W + +L L E +E KV Y
Sbjct: 135 --RKVV-------GESVRITVRPHEYITFSWSKSWFSRRVRELELGEPIIKEEKV--YLP 183
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P FL++D N + E + + + + Y+ E++++ +
Sbjct: 184 FRYKLPWATPV-DFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 237
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIV---LEEVPKNF 233
+ K + +GR+L+ K+ R+RNR +D KF L++L + + E + K+
Sbjct: 238 SFASK-HTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDA 296
Query: 234 NQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAF 293
N ++R+ R G R + KA + V V+P ++S+ CP CG
Sbjct: 297 NDSLSRKISRTVWG-----------SIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFV 345
Query: 294 NVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
+ K + F C CGF +DR A LN+
Sbjct: 346 SRKVG------KTFECERCGFKLDRQLNASLNI 372
>gb|AAK41334.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/337 (22%), Positives = 142/337 (41%), Gaps = 63/337 (18%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP VK+ + + L
Sbjct: 88 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTL------------- 134
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++PH+ ++ W + +L L E +E KV Y
Sbjct: 135 --RKVV-------GESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV--YLP 183
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E + + + + Y+ E++++ +
Sbjct: 184 FRYKLPWVTPV-NFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 237
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVEL-------AKVLNATIVLEEV 229
+ K + +GR+LL K+ R+RNR +D KF L++L + LN + ++
Sbjct: 238 SFASK-HTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDA 296
Query: 230 PKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPG 289
+ ++K++R R R + KA + V V+P +S+ CP
Sbjct: 297 NGSLSRKISRTVWR---------------SIHRVLKYKAPLYGSFVKEVNPHLTSRSCPR 341
Query: 290 CGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
CG + K + F C CGF +DR A LN+
Sbjct: 342 CGFVSRKVG------KTFECERCGFKLDRQLNASLNI 372
>gb|AAK41436.1| Transposase ISC1316 [Sulfolobus solfataricus]
Length = 393
Score = 71.4 bits (172), Expect = 2e-11
Identities = 82/280 (29%), Positives = 126/280 (44%), Gaps = 35/280 (12%)
Query: 60 KNGRKILIIRLSTRKGR------IKLSLKPHKLFFKYLNEGW---KVKPGVKLRLIEEER 110
++G KIL +R RKG+ I L L F ++ + KVK V ++L ER
Sbjct: 113 QSGWKILHVR-EIRKGKKNKKKLITLKLSNLGTFKVIVHRDFPLDKVKR-VVVKLTRSER 170
Query: 111 KVLAYFVFEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREI 170
+ FV + EF + TG +++D +G + LI + R Y ++
Sbjct: 171 -IYITFVVDHEFPKLPNTGKVVAID-------VGVEKLLITSDGEYFPNLRPYEKALWKV 222
Query: 171 QKSHLVGWRRKLPSNKGRKLLEKFGR---RKRNRRVDLQGKFAKRLVELAKVLNATIVLE 227
+ H R+K SN K K R +N R DL K K E V +V+E
Sbjct: 223 KHIHRELSRKKFLSNNWFKAKVKLARAYEHLKNLRTDLYMKLGKWFAEHYDV----VVME 278
Query: 228 EVPKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKIC 287
+ + Q V + + + L DV + G ++ LEK + ++ V+P+Y+SK C
Sbjct: 279 GI--HAKQLVGKSLRSLRRRLSDVGFG-ELRGVLKYQLEK---YGKKLILVNPAYTSKTC 332
Query: 288 PGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLL 327
CG +D +L RVF CP CG+ DRD+ A LN+L
Sbjct: 333 ARCGYVK---NDLSLSDRVFVCPNCGWIADRDYNASLNIL 369
>gb|AAK41882.1| Transposase ISC1316 [Sulfolobus solfataricus]
Length = 395
Score = 71.4 bits (172), Expect = 2e-11
Identities = 78/277 (28%), Positives = 126/277 (45%), Gaps = 31/277 (11%)
Query: 60 KNGRKILI---IRLSTRKGRIKLSLKPHKLFFKYLNEGW---KVKPGVKLRLIEEERKVL 113
++G KIL IR ++K I L L F ++ + KVK V ++L ER +
Sbjct: 113 QSGWKILQVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKR-VIVKLTRSER-IY 170
Query: 114 AYFVFEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNVRREIQKS 173
FV + EF + TG +++D +G + L+ + R Y +++
Sbjct: 171 ITFVVDHEFPKLPNTGKVVAID-------VGVEKLLVTSDGEYFPNLRPYEKALWKVKHL 223
Query: 174 HLVGWRRKLPSNKGRKLLEKFGRRK---RNRRVDLQGKFAKRLVELAKVLNATIVLEEVP 230
H R+K SN K K R +N R DL K K E V +V+E++
Sbjct: 224 HRELSRKKFLSNNWFKAKVKLARAYEYLKNLRTDLYMKLGKWFAEHYDV----VVMEDI- 278
Query: 231 KNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGC 290
+ Q + + + + L DV + + ++ LEK + ++ V+P+Y+SK C C
Sbjct: 279 -HVKQLIGKSLRSLRRRLSDVAFS-ELRDLIKYQLEK---YGKKLILVNPAYTSKTCAKC 333
Query: 291 GAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLL 327
G +D +L RVF CP CG+ DRD+ A LN+L
Sbjct: 334 GYVK---EDLSLSDRVFVCPNCGWIADRDYNASLNIL 367
>gb|AAK41577.1| Transposase ISC1316 [Sulfolobus solfataricus]
Length = 403
Score = 71.0 bits (171), Expect = 2e-11
Identities = 82/284 (28%), Positives = 127/284 (43%), Gaps = 36/284 (12%)
Query: 53 FPQFNTLKNGRKILI---IRLSTRKGRIKLSLKPHKLFFKYLNEGW---KVKPGVKLRLI 106
+PQ+ G KIL IR ++K I L L F ++ + KVK V ++L
Sbjct: 111 YPQY-----GWKILHVREIRKGSKKKLITLKLSNLGTFKVIVHRDFPLDKVKR-VVVKLT 164
Query: 107 EEERKVLAYFVFEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNV 166
ER + FV + EF + TG +++D +G + L+ + R Y
Sbjct: 165 RSER-IYITFVVDHEFPKLPNTGKVVAID-------VGVEKLLVTSDGEYFPNLRPYEKA 216
Query: 167 RREIQKSHLVGWRRKLPSNKGRKLLEKFGRRK---RNRRVDLQGKFAKRLVELAKVLNAT 223
+++ H R+K SN K K R +N R DL K K E V
Sbjct: 217 LWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEYLKNLRTDLYMKLGKWFAEHYDV---- 272
Query: 224 IVLEEVPKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYS 283
+V+E + + Q V + + + L DV + G ++ LEK + ++ V+P+Y+
Sbjct: 273 VVMEGI--HAKQLVGKSLRSLRRRLSDVGFG-ELRGVLKYQLEK---YGKKLILVNPAYT 326
Query: 284 SKICPGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLL 327
SK C CG +D +L RVF CP CG+ DRD+ A LN+L
Sbjct: 327 SKTCARCGYVK---NDLSLSDRVFVCPNCGWIADRDYNASLNIL 367
>gb|AAK41574.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 423
Score = 70.6 bits (170), Expect = 3e-11
Identities = 76/337 (22%), Positives = 142/337 (41%), Gaps = 63/337 (18%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP VK+ + + L
Sbjct: 87 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTL------------- 133
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++P++ ++ W + +L L E +E KV Y
Sbjct: 134 --RKVV-------GESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV--YLP 182
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E + + + + Y+ E++++ +
Sbjct: 183 FRYKLPWATPL-NFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 236
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVEL-------AKVLNATIVLEEV 229
+ K + +GR+LL K+ R+RNR +D KF L++L + LN + +
Sbjct: 237 SFASK-HTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDA 295
Query: 230 PKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPG 289
+ ++K++R R R + KA + V V+P ++S+ CP
Sbjct: 296 NDSLSRKISRTVWR---------------SIHRVLKYKAPLYGSFVKEVNPRFTSRSCPR 340
Query: 290 CGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
CG + K + F C CGF +DR A LN+
Sbjct: 341 CGFVSRKVG------KTFECERCGFKLDRQLNASLNI 371
>sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir||G64393 hypothetical
protein MJ0751 - Methanococcus jannaschii
>gi|1591465|gb|AAB98747.1| (U67521) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 278
Score = 70.6 bits (170), Expect = 3e-11
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 23/202 (11%)
Query: 132 LSVDYNADNISLGTSE----FLIQVRTDLGKITRFYTNVRREIQKSHLVGWRRKLPSNKG 187
+++D N NI+ + + R D+ K+ R + N ++ +K +K SNK
Sbjct: 71 MTIDINEKNITYSIFDKDGNVIKTTRLDVYKLKRIHENFSKKREKI------QKKLSNKP 124
Query: 188 RKL---LEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARRRKRK 244
KL +EK+ R++ + D K +K L+ A N I++E++ N + V +K
Sbjct: 125 MKLKTLMEKYSGREKRKVEDYLHKISKFLISEALKYNVKILMEDLT-NIREAV----NKK 179
Query: 245 EKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDDALRR 304
K R L+ + Q F+ KA + V +V+PS +SK+CP CG K D + +
Sbjct: 180 SKNFRRRLNRWNFSKLQFFIEYKAKWDGLDVEYVNPSRTSKLCPICGC---KLDPNG--Q 234
Query: 305 RVFNCPVCGFSMDRDFVAVLNL 326
R+ C C DRD VA NL
Sbjct: 235 RLLKCNNCNLVFDRDVVATFNL 256
>gb|AAK42898.1| Transposase ISC1316 [Sulfolobus solfataricus]
Length = 399
Score = 69.9 bits (168), Expect = 5e-11
Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 37/285 (12%)
Query: 53 FPQFNTLKNGRKILI---IRLSTRKGRIKLSLKPHKLFFKYLNEGW---KVKPGVKLRLI 106
+PQ+ G KIL IR ++K I L L +F ++ + KVK V ++L
Sbjct: 111 YPQY-----GWKILQVREIRKGSKKKLITLKLSNLGVFKVIVHRDFPLDKVKR-VVVKLT 164
Query: 107 EEERKVLAYFVFEKEFEEQEPTGSFLSVDYNADNISLGT-SEFLIQVRTDLGKITRFYTN 165
ER + + V EF + TG +++D + + + + SE+ +R L K +
Sbjct: 165 RSERIYITFVVEGYEFPKLPNTGKVVAIDVGVEKLLVTSDSEYFPNLRP-LEKALWKVKH 223
Query: 166 VRREIQKSHLVGWRRKLPSNKGRKLLEKFGR---RKRNRRVDLQGKFAKRLVELAKVLNA 222
+ RE+ R+K SN K K R +N R DL K K E V
Sbjct: 224 LHRELS-------RKKFLSNNWFKAKVKLARAYEHLKNLRTDLYMKLGKWFAEHYDV--- 273
Query: 223 TIVLEEVPKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSY 282
+V+E++ + Q + + + + L DV + + ++ LEK + ++ V+P+Y
Sbjct: 274 -VVMEDI--HVKQLIGKSLRSLRRRLSDVAFS-ELRDLIKYQLEK---YGKKLILVNPAY 326
Query: 283 SSKICPGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLL 327
+SK C CG +D +L RVF C CG+ DRD+ A LN+L
Sbjct: 327 TSKTCARCGYVK---EDLSLSDRVFVCSNCGWIADRDYNASLNIL 368
>gb|AAK41463.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 69.5 bits (167), Expect = 7e-11
Identities = 78/330 (23%), Positives = 140/330 (41%), Gaps = 49/330 (14%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP VK+ + + L
Sbjct: 88 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTL------------- 134
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++PH+ ++ W + +L L E +E KV Y
Sbjct: 135 --RKVV-------GESVRITVRPHEYITFPWSKSWFSRRVRELELGEPIIKEEKV--YLP 183
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E + + + + Y+ E++++ +
Sbjct: 184 FRYKLPWVTPV-NFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 237
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQK 236
+ K + +GR+L+ K+ R+RNR +D KF L++L + +E++ K
Sbjct: 238 SFASK-HTKRGRELMRKYSHRERNRVLDFVHKFVNALLDLYPM--TFFAVEKLDKE-GMF 293
Query: 237 VARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVK 296
V K R V +I R + KA + V V+P +S+ CP CG + K
Sbjct: 294 VDANESLSRKISRTVWRSI-----HRVLKYKAPLYGSFVKEVNPYLTSRSCPRCGFVSRK 348
Query: 297 PDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
+ F C CGF +DR A LN+
Sbjct: 349 VG------KTFECERCGFKLDRQLNASLNI 372
>gb|AAK41873.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 69.1 bits (166), Expect = 9e-11
Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 65/338 (19%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY +A + S+ + KG+ EKP +K+ + + L
Sbjct: 88 LASHYVDKAINNAFSIITSWRKRAIKGRASIEKPTLKKAYVKVKSTL------------- 134
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++PH+ ++ W + +L L E +E KV Y
Sbjct: 135 --RKVV-------GESVRITVRPHEYITFSWSKSWFSRRVRELELGEPIIKEEKV--YLP 183
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E + + + + Y+ E++++ +
Sbjct: 184 FRYKLPWATPV-NFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 237
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIV---LEEVPKNF 233
+ K + +GR+LL K+ R+RNR +D KF L++L V + E + K+
Sbjct: 238 SFASK-HTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPVTFFAVEKLDKESMFKDA 296
Query: 234 NQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVP-----VVFVSPSYSSKICP 288
N ++R+ R G + K +E+ P V V+P +S+ CP
Sbjct: 297 NDSLSRKISRTVWG----------------SIHKVLEYKAPLYGSFVKEVNPYLTSRSCP 340
Query: 289 GCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
CG + K + F C CGF +DR A LN+
Sbjct: 341 RCGFVSRKVG------KTFECERCGFKLDRQLNASLNI 372
>gb|AAK42892.1| Transposon ISC1316 [Sulfolobus solfataricus]
Length = 374
Score = 69.1 bits (166), Expect = 9e-11
Identities = 81/284 (28%), Positives = 131/284 (45%), Gaps = 37/284 (13%)
Query: 53 FPQFNTLKNGRKILIIRLSTRKGRIKL-SLKPHKL--FFKYLNEGW---KVKPGVKLRLI 106
+PQ+ G KIL +R RKG+ KL +LK L F ++ + KVK V ++L
Sbjct: 88 YPQY-----GWKILQVR-EIRKGKKKLITLKLSNLGTFKVIVHRDFPLDKVKR-VVVKLT 140
Query: 107 EEERKVLAYFVFEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYTNV 166
ER + FV + EF + TG +++D +G + ++ + R Y
Sbjct: 141 RSER-IYITFVVDHEFPKLPNTGKVVAID-------VGIEKLIVTSDGEYFPNLRPYEKA 192
Query: 167 RREIQKSHLVGWRRKLPSNKGRKLLEKFGRRK---RNRRVDLQGKFAKRLVELAKVLNAT 223
+++ H R+K SN K K R +N R DL K K E V
Sbjct: 193 LWKVKHLHRELSRKKFLSNNWFKAKVKLARAYEYLKNLRTDLYMKLGKWFAEHYDV---- 248
Query: 224 IVLEEVPKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYS 283
+V+E++ + Q + + + + L DV + + ++ LEK + ++ V+P+Y+
Sbjct: 249 VVMEDI--HVKQLIGKSLRSLRRRLSDVAFS-ELRDLIKYQLEK---YGKKLILVNPAYT 302
Query: 284 SKICPGCGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNLL 327
SK C CG +D +L RVF C CG+ DRD+ A LN+L
Sbjct: 303 SKTCARCGYVK---EDLSLSDRVFVCSNCGWIADRDYNASLNIL 343
>gb|AAK43254.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 423
Score = 69.1 bits (166), Expect = 9e-11
Identities = 78/333 (23%), Positives = 140/333 (41%), Gaps = 55/333 (16%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP VK + + L
Sbjct: 87 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTL------------- 133
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++P++ + W + +L L E +E KV Y
Sbjct: 134 --RKVV-------GESVRITVRPYEYITFSWSNLWFSRRVRELELGEPIIKEEKV--YLP 182
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E I + + + Y+ E++++ +
Sbjct: 183 FRYKLPWATPL-NFLAIDSNLYTLDAYDGEKFITI-----SLKQLYSLKYSMEVKRAKVQ 236
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATI---VLEEVPKNF 233
+ K + +GR+LL K+ R+RNR +D KF L++L + + E + K+
Sbjct: 237 SFASK-HTKRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDA 295
Query: 234 NQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAF 293
N ++R+ R G R + KA + V V+P ++S+ CP CG
Sbjct: 296 NGSLSRKISRTVWG-----------SIHRVLKYKAPLYGSFVKEVNPHFTSRSCPRCGFV 344
Query: 294 NVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
+ K + F C CGF +DR A LN+
Sbjct: 345 SRKVG------KTFECERCGFKLDRQLNASLNI 371
>gb|AAK43271.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 69.1 bits (166), Expect = 9e-11
Identities = 74/337 (21%), Positives = 142/337 (41%), Gaps = 63/337 (18%)
Query: 1 MPTHYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLK 60
+ +HY DA + KS+ + KG+ EKP +K+ + + L
Sbjct: 88 LASHYVDKAINDAFSILKSWRKRAIKGRASIEKPTLKKAYVRIKTTL------------- 134
Query: 61 NGRKILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIE---EERKVLAYFV 117
RK++ ++++++P++ ++ W + +L L E +E KV Y
Sbjct: 135 --RKVV-------GESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKV--YLP 183
Query: 118 FEKEFEEQEPTGSFLSVDYNADNISLGTSEFLIQVRTDLGKITRFYT-NVRREIQKSHLV 176
F + P +FL++D N + E + + + + Y+ E++++ +
Sbjct: 184 FRYKLPWVTPV-NFLAIDSNLYTLDAYDGEKFVTI-----SLKQLYSLKYSMEVKRAKVQ 237
Query: 177 GWRRKLPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVEL-------AKVLNATIVLEEV 229
+ K + +GR+L+ K+ R+RNR +D KF L++L + LN + ++
Sbjct: 238 SFASK-HTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAVEKLNKESMFKDA 296
Query: 230 PKNFNQKVARRRKRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPG 289
+ ++K++R R R + KA + V V+P +S+ CP
Sbjct: 297 NGSLSRKISRTVWR---------------SIHRVLKYKAPLYGSFVKEVNPHLTSRSCPR 341
Query: 290 CGAFNVKPDDDALRRRVFNCPVCGFSMDRDFVAVLNL 326
CG + K + F C CGF +DR A LN+
Sbjct: 342 CGFVSRKVG------KTFECERCGFKLDRQLNASLNI 372
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152655515
Number of Sequences: 2977
Number of extensions: 6479467
Number of successful extensions: 14638
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 14580
Number of HSP's gapped (non-prelim): 23
length of query: 404
length of database: 189,106,746
effective HSP length: 54
effective length of query: 350
effective length of database: 156,788,448
effective search space: 54875956800
effective search space used: 54875956800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)