BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1454 1349288 1348848 -147 !not a gene!
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71109 hypothetical protein PH0646 - Pyrococcus horikoshii ...   142  2e-33

>pir||G71109 hypothetical protein PH0646 - Pyrococcus horikoshii
           >gi|3257054|dbj|BAA29737.1| (AP000003) 303aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 303
           
 Score =  142 bits (355), Expect = 2e-33
 Identities = 75/146 (51%), Positives = 89/146 (60%)

Query: 1   MVFAIFFSSFLSIPVPFLSLAEMKMTGISLLFLYSSAHSFGTKSALFITMXXXXXXXXXX 60
           ++FAIFFSS L IPVPFLSLAE+K TGISL  LYSSAHS GTKSALFIT           
Sbjct: 157 IIFAIFFSSLLRIPVPFLSLAEIKTTGISLFLLYSSAHSLGTKSALFITNKSFLPLSKTI 216

Query: 61  XXXXXXXVPIGSLAXXXXXXXXXXXXXXFTILQAFFCFIPHHRDLEGHCSSGSIWGPRIW 120
                  VP+GSLA              FTI QAFFCFIPHHR  + + +   I G R+ 
Sbjct: 217 LSSFLFLVPMGSLASTTSTTMSASSITSFTIAQAFFCFIPHHRYFKDYGTPWGIRGARVG 276

Query: 121 TVNIGLLLISKPNLARLNTFPKGYYV 146
           T+++GL+L SKP    L+ F + YYV
Sbjct: 277 TLDVGLILGSKPYFFWLHAFSERYYV 302


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.144    0.456 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41166546
Number of Sequences: 2977
Number of extensions: 1180407
Number of successful extensions: 2361
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2359
Number of HSP's gapped (non-prelim): 1
length of query: 147
length of database: 189,106,746
effective HSP length: 47
effective length of query: 100
effective length of database: 160,977,857
effective search space: 16097785700
effective search space used: 16097785700
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 162 (67.5 bits)