BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1455 (PAB1455) DE:Hypothetical protein
(480 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75050 hypothetical protein PAB1455 - Pyrococcus abyssi (st... 919 0.0
pir||A71110 hypothetical protein PH0648 - Pyrococcus horikoshii ... 792 0.0
sp|Q58245|Y835_METJA HYPOTHETICAL PROTEIN MJ0835 >gi|2128536|pir... 84 3e-15
pir||B69004 hypothetical protein MTH1028 - Methanobacterium ther... 72 1e-11
>pir||D75050 hypothetical protein PAB1455 - Pyrococcus abyssi (strain Orsay)
>gi|5458810|emb|CAB50297.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 480
Score = 919 bits (2348), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MIYNRSVVSAVAEDIEEKIRRLRELGRIVTETEEQPPTPGPPKPPRRRVSRIGTFRERER 60
MIYNRSVVSAVAEDIEEKIRRLRELGRIVTETEEQPPTPGPPKPPRRRVSRIGTFRERER
Sbjct: 1 MIYNRSVVSAVAEDIEEKIRRLRELGRIVTETEEQPPTPGPPKPPRRRVSRIGTFRERER 60
Query: 61 RKRIIIGALVLTIIIVGAVISIYTYMESKAARELENAKRAKIAEVNKCFTGELANDTTKV 120
RKRIIIGALVLTIIIVGAVISIYTYMESKAARELENAKRAKIAEVNKCFTGELANDTTKV
Sbjct: 61 RKRIIIGALVLTIIIVGAVISIYTYMESKAARELENAKRAKIAEVNKCFTGELANDTTKV 120
Query: 121 QLINKILAAKNVEEVMSINVKAICEKRKQELEEAKRRAEELKRLKELQALKNQTKENIKM 180
QLINKILAAKNVEEVMSINVKAICEKRKQELEEAKRRAEELKRLKELQALKNQTKENIKM
Sbjct: 121 QLINKILAAKNVEEVMSINVKAICEKRKQELEEAKRRAEELKRLKELQALKNQTKENIKM 180
Query: 181 AFEPLLQAQVPDELKAEIISTLNSLLAQVDAAKTKDEVLAISPDEYLLNLWKKVYYYRID 240
AFEPLLQAQVPDELKAEIISTLNSLLAQVDAAKTKDEVLAISPDEYLLNLWKKVYYYRID
Sbjct: 181 AFEPLLQAQVPDELKAEIISTLNSLLAQVDAAKTKDEVLAISPDEYLLNLWKKVYYYRID 240
Query: 241 SIPTRDVILKKGKESKICSKDEAKEIIGKVTNLADLLQYSVEKVEFVQIALVLPRDSVVG 300
SIPTRDVILKKGKESKICSKDEAKEIIGKVTNLADLLQYSVEKVEFVQIALVLPRDSVVG
Sbjct: 241 SIPTRDVILKKGKESKICSKDEAKEIIGKVTNLADLLQYSVEKVEFVQIALVLPRDSVVG 300
Query: 301 GFLQPGDKVTIYAKSNGTKFEEIVPEGRVDLVLVAVSKINVYESESKSTSVSSSSSTTSQ 360
GFLQPGDKVTIYAKSNGTKFEEIVPEGRVDLVLVAVSKINVYESESKSTSVSSSSSTTSQ
Sbjct: 301 GFLQPGDKVTIYAKSNGTKFEEIVPEGRVDLVLVAVSKINVYESESKSTSVSSSSSTTSQ 360
Query: 361 QSSTTNYSPGAETSYQTSQTSQVQSSTTQSSSETISASYSYTVDLAEILKAIAAGKVSDP 420
QSSTTNYSPGAETSYQTSQTSQVQSSTTQSSSETISASYSYTVDLAEILKAIAAGKVSDP
Sbjct: 361 QSSTTNYSPGAETSYQTSQTSQVQSSTTQSSSETISASYSYTVDLAEILKAIAAGKVSDP 420
Query: 421 QKIREELEKYGWKVLDLEKNTNLMALPETTKVLVIVEVPKDFVPKVLTYKSSVVLARATG 480
QKIREELEKYGWKVLDLEKNTNLMALPETTKVLVIVEVPKDFVPKVLTYKSSVVLARATG
Sbjct: 421 QKIREELEKYGWKVLDLEKNTNLMALPETTKVLVIVEVPKDFVPKVLTYKSSVVLARATG 480
>pir||A71110 hypothetical protein PH0648 - Pyrococcus horikoshii
>gi|3257056|dbj|BAA29739.1| (AP000003) 475aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 475
Score = 792 bits (2024), Expect = 0.0
Identities = 398/474 (83%), Positives = 447/474 (93%)
Query: 7 VVSAVAEDIEEKIRRLRELGRIVTETEEQPPTPGPPKPPRRRVSRIGTFRERERRKRIII 66
VVSAVAEDIEEKIRRLRELGR ETEEQPPTPGPPKPPRRRVSRIG FRERERRKRIII
Sbjct: 2 VVSAVAEDIEEKIRRLRELGRAAAETEEQPPTPGPPKPPRRRVSRIGMFRERERRKRIII 61
Query: 67 GALVLTIIIVGAVISIYTYMESKAARELENAKRAKIAEVNKCFTGELANDTTKVQLINKI 126
GALVLTI+IVGAVISIYTY+ESKAARELENAK+AKIAEVNKCFTGELANDT KVQLINKI
Sbjct: 62 GALVLTIVIVGAVISIYTYLESKAARELENAKKAKIAEVNKCFTGELANDTVKVQLINKI 121
Query: 127 LAAKNVEEVMSINVKAICEKRKQELEEAKRRAEELKRLKELQALKNQTKENIKMAFEPLL 186
LAAK+V+EV SINVKAICEKR QE+ EAKRRAEE KRLKEL+ALKNQTKENIK+AFEPLL
Sbjct: 122 LAAKSVKEVQSINVKAICEKRLQEIREAKRRAEEEKRLKELEALKNQTKENIKLAFEPLL 181
Query: 187 QAQVPDELKAEIISTLNSLLAQVDAAKTKDEVLAISPDEYLLNLWKKVYYYRIDSIPTRD 246
Q +VPDELKAEI+STLN+LLAQVDAAKTKDEVL+ISPDEYLLNLWKKVY+YRIDSIPT+D
Sbjct: 182 QVRVPDELKAEIVSTLNALLAQVDAAKTKDEVLSISPDEYLLNLWKKVYFYRIDSIPTKD 241
Query: 247 VILKKGKESKICSKDEAKEIIGKVTNLADLLQYSVEKVEFVQIALVLPRDSVVGGFLQPG 306
VILK+G I +K+EAKEIIGK+ L++LLQYSV++VEFVQ+ALVLPRDSVVGGFL+PG
Sbjct: 242 VILKRGTSMNIYTKEEAKEIIGKIGTLSELLQYSVKEVEFVQVALVLPRDSVVGGFLEPG 301
Query: 307 DKVTIYAKSNGTKFEEIVPEGRVDLVLVAVSKINVYESESKSTSVSSSSSTTSQQSSTTN 366
DK+ IYA+SNGTKFEEIVPEGRV +VL A SKIN+YESE+K+TSVSSSSSTTSQQSS TN
Sbjct: 302 DKIKIYARSNGTKFEEIVPEGRVSMVLFAASKINLYESETKTTSVSSSSSTTSQQSSLTN 361
Query: 367 YSPGAETSYQTSQTSQVQSSTTQSSSETISASYSYTVDLAEILKAIAAGKVSDPQKIREE 426
Y+PGAET+YQTSQTSQ Q+STTQ+SSETISASYSY+VDL+EILKAIAAGK++DP+K++ E
Sbjct: 362 YAPGAETNYQTSQTSQTQASTTQTSSETISASYSYSVDLSEILKAIAAGKINDPEKVKAE 421
Query: 427 LEKYGWKVLDLEKNTNLMALPETTKVLVIVEVPKDFVPKVLTYKSSVVLARATG 480
LEKYGWKVLDLE+ TNLMALP+ T+VLV+VEVPKDFVPK+LTY+SSVV+A+ TG
Sbjct: 422 LEKYGWKVLDLERETNLMALPKNTEVLVLVEVPKDFVPKLLTYESSVVIAKITG 475
>sp|Q58245|Y835_METJA HYPOTHETICAL PROTEIN MJ0835 >gi|2128536|pir||C64404 hypothetical
protein MJ0835 - Methanococcus jannaschii
>gi|1591523|gb|AAB98838.1| (U67527) M. jannaschii
predicted coding region MJ0835 [Methanococcus
jannaschii]
Length = 377
Score = 83.9 bits (204), Expect = 3e-15
Identities = 109/430 (25%), Positives = 187/430 (43%), Gaps = 84/430 (19%)
Query: 50 SRIGTFRERERRKRIIIGAL-----VLTIIIVGAVISI-YTYMESKAARE---LENAKRA 100
S+I +E+ RR + G+L +L ++IVG + I Y + + +E LEN K+A
Sbjct: 5 SKIKALKEKSRRT-VKSGSLKFILIILVVVIVGLLAFIAYNEISNLQFQEKITLENQKKA 63
Query: 101 KIAEVNKCFTGELANDTTKVQLINKILAAKNVEEVMSINVKAICEKRKQELEEAKRRAEE 160
I +N+ F + ND K+ INKI A N+EE+ + E+ K+ + + E
Sbjct: 64 AIESINQMFA-KYPNDPQKLIYINKIQMANNIEEI-----NEVLEEAKKYISFKNYKIEA 117
Query: 161 LKRLKELQALKNQTKENIKMAFEPLLQAQVPDELKAEIISTLNSLLAQVDAAKTKDEVLA 220
+ ++K + + + + AQ +E++ +LL VD K ++
Sbjct: 118 INQIKSMYGEYYSLSLSAQELVHKISLAQSTEEIE--------NLLKSVDIEKDIRSIIE 169
Query: 221 ISPDEYLLNLWKKVYYYRIDS---IPTRDVILKKGKESKICSKDEAKEIIGKVTNLADLL 277
D Y+L K YY I+ TRD ILK K + E K + K+T ++ L
Sbjct: 170 KQID-YVLASGDKYYYVEINGKSMFMTRDEILKY---KKFWTLSELKSL--KITPVSQLN 223
Query: 278 QYSVEKVEFVQIALVLPRDSVVGGFLQPGDKVTIYAKSNGTKFEEIVPEGRVDLVLVAVS 337
+ ++E + Q G GD ++IY+K + G +D V +S
Sbjct: 224 KVAIE-ISAKQC----------GKLPHKGDIISIYSKDG-----SFITYGIIDSSYVILS 267
Query: 338 KINVYESESKSTSVSSSSSTTSQQSSTTNYSPGAETSYQTSQTSQVQSSTTQSSSETISA 397
I+ SESKSTS S +++ S + SSS +IS
Sbjct: 268 SISY--SESKSTS---------------------------SNINELGESYSSSSSSSISY 298
Query: 398 SYSYTVDLAEILKAIAAGKVSDPQKIREELEKYGWKVLDLEKNTNLMALPETTKVLVIVE 457
S + +L IL A ++ D KI++ +YG K+ ++E +T + E +I+
Sbjct: 299 SLN---NLPGILHATVIDRL-DYDKIKKMFGEYGKKLNEIEDDTQI--FDENVNYFLIIS 352
Query: 458 VPKDFVPKVL 467
+P D +P ++
Sbjct: 353 IPDDKIPDII 362
>pir||B69004 hypothetical protein MTH1028 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622131|gb|AAB85524.1| (AE000875)
unknown [Methanobacterium thermoautotrophicum]
Length = 441
Score = 71.8 bits (173), Expect = 1e-11
Identities = 67/282 (23%), Positives = 128/282 (44%), Gaps = 38/282 (13%)
Query: 204 SLLAQVDAAKTKDEVLAISPDEYLLNLWKKVYYYRIDSIPTR--DVILK---KGKESKIC 258
++LAQ+DAA T +E LA+ W+ +I+ R V++ +E ++
Sbjct: 176 AILAQIDAAVTPEEALAVDVVGPATQSWRTYQNQQINIKKDRVGRVMVNYTDNNQEKRVI 235
Query: 259 SK-DEAKEIIGKVTNLADLLQYSVEKVEFVQIALVLPRDSVVGGFLQPGDKVTIYAKSNG 317
K D+AK+ + + + L ++ + V + +++ R GG + GD V +Y N
Sbjct: 236 MKVDDAKKFVSQA-DATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGDMVDVYLNQNA 294
Query: 318 TKFEEIVPEGRVDLVLVAVSKINVYESESKSTSVSSSSSTTSQQSSTTNYSPGAETSYQT 377
T + S +TS S T + S +
Sbjct: 295 TG-----------------------NNTSAATSTPRISGATVLAILRSKDSGAVDARILN 331
Query: 378 SQTSQVQSSTTQSSSETISASYSYTVDLAEILKAIAAGKVSDPQKIREELEKYGWKVLDL 437
+Q + S T+QS +E S++ D+ ++L+A A+G +++ + I L+ YG ++ D
Sbjct: 332 TQRLTLNSITSQSENERASST-----DVEQLLRAAASGGLNEAE-INAILQNYGIRLSDY 385
Query: 438 EKNTNLMALPETTKVLVIVEVPKDFVPKVLTYKSSVVLARAT 479
E+++NL L T L+I+EVP++ V ++ +S++L T
Sbjct: 386 ERSSNLGEL--DTNYLIILEVPREDVLFLIQNMNSIILTVPT 425
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.311 0.128 0.334
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156185121
Number of Sequences: 2977
Number of extensions: 6312324
Number of successful extensions: 56544
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 56531
Number of HSP's gapped (non-prelim): 5
length of query: 480
length of database: 189,106,746
effective HSP length: 68
effective length of query: 412
effective length of database: 148,409,630
effective search space: 61144767560
effective search space used: 61144767560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 166 (69.1 bits)