BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1456 (PAB1456) DE:Hypothetical protein
         (305 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75050 hypothetical protein PAB1456 - Pyrococcus abyssi (st...   625  e-178
pir||B71110 hypothetical protein PH0649 - Pyrococcus horikoshii ...   333  2e-90

>pir||C75050 hypothetical protein PAB1456 - Pyrococcus abyssi (strain Orsay)
           >gi|5458809|emb|CAB50296.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 305
           
 Score =  625 bits (1595), Expect = e-178
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MRRIFGVTLAFLLLSILTNPAIAQERNNINLVGIVQIEMNMTIINTGDLPKFVIVNPRYN 60
           MRRIFGVTLAFLLLSILTNPAIAQERNNINLVGIVQIEMNMTIINTGDLPKFVIVNPRYN
Sbjct: 1   MRRIFGVTLAFLLLSILTNPAIAQERNNINLVGIVQIEMNMTIINTGDLPKFVIVNPRYN 60

Query: 61  FQVIRENMSEVYSGSEITSPEKNVLNYRLGFWIYPHEVVKVKLSLNTSMPLTHFQTPLCA 120
           FQVIRENMSEVYSGSEITSPEKNVLNYRLGFWIYPHEVVKVKLSLNTSMPLTHFQTPLCA
Sbjct: 61  FQVIRENMSEVYSGSEITSPEKNVLNYRLGFWIYPHEVVKVKLSLNTSMPLTHFQTPLCA 120

Query: 121 GRIFVEGDRPFVEVPDTFEMPICEVLIPQLVNSPMYLTPESFFLTRDQSLVLYSYEGVVT 180
           GRIFVEGDRPFVEVPDTFEMPICEVLIPQLVNSPMYLTPESFFLTRDQSLVLYSYEGVVT
Sbjct: 121 GRIFVEGDRPFVEVPDTFEMPICEVLIPQLVNSPMYLTPESFFLTRDQSLVLYSYEGVVT 180

Query: 181 FKIKHELPPNLRFRDVFAVSPPILFLNAKVYSYYPRPTMNYTEYLKFIREEFGLDVPKPV 240
           FKIKHELPPNLRFRDVFAVSPPILFLNAKVYSYYPRPTMNYTEYLKFIREEFGLDVPKPV
Sbjct: 181 FKIKHELPPNLRFRDVFAVSPPILFLNAKVYSYYPRPTMNYTEYLKFIREEFGLDVPKPV 240

Query: 241 KLNITEDTILYDMKLGLLSTSQTLPQIQKPRFEEIDYPVWIVWLGSGSSIEIRYRFEWRL 300
           KLNITEDTILYDMKLGLLSTSQTLPQIQKPRFEEIDYPVWIVWLGSGSSIEIRYRFEWRL
Sbjct: 241 KLNITEDTILYDMKLGLLSTSQTLPQIQKPRFEEIDYPVWIVWLGSGSSIEIRYRFEWRL 300

Query: 301 GGEAG 305
           GGEAG
Sbjct: 301 GGEAG 305


>pir||B71110 hypothetical protein PH0649 - Pyrococcus horikoshii
           >gi|3257057|dbj|BAA29740.1| (AP000003) 317aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 317
           
 Score =  333 bits (845), Expect = 2e-90
 Identities = 167/312 (53%), Positives = 217/312 (69%), Gaps = 13/312 (4%)

Query: 1   MRRI--FGVTLAFLLLSILTNPAIAQERNNINLVGIVQIEMNMTIINTGDLPKFVIVNPR 58
           MRR   F   +  L LS  + P+IAQ  NN+ L G+V IEMN+T+IN GD  KF++VNPR
Sbjct: 4   MRRFLPFLFIITILTLSFTSRPSIAQ--NNLYLKGLVDIEMNVTLINLGDEAKFLMVNPR 61

Query: 59  YNFQVIRENMSEVYSGSEITSPEKNVLNYRLGFWIYPHEVVKVKLSLNTS----MPLTHF 114
           YNFQVIREN+SE Y+G EI SP KNV+NY+LGFW+YPHEVVK++  +N S    +PL  F
Sbjct: 62  YNFQVIRENLSESYNGIEINSPRKNVINYKLGFWVYPHEVVKIRFYINDSNPLEVPLRDF 121

Query: 115 QTPLCAGRIFVEGDRPFVEVP--DTFEMPICEVLIPQLVNSPMYLTPESFFLTRDQSLVL 172
            TP C G I+VE  R FVEVP   +   PIC+++ P L+NSPMYL+PES F  RD SLVL
Sbjct: 122 VTPQCTGNIYVENGRYFVEVPVFTSLAPPICDLMFPPLINSPMYLSPESLFNFRDPSLVL 181

Query: 173 YSYEGVVTFKIKHELP-PNLRFRDVFAVSPPILFLNAKVYSYYPRPTMNYTEYLKFIREE 231
           YSYEG++ FK+ H        FRDV AVSPPILF NAKVY YYP PTMNYTEY+++++  
Sbjct: 182 YSYEGLIKFKLIHNSSYKQGYFRDVIAVSPPILFPNAKVYGYYPHPTMNYTEYIEYLKGA 241

Query: 232 FGLDVP--KPVKLNITEDTILYDMKLGLLSTSQTLPQIQKPRFEEIDYPVWIVWLGSGSS 289
            G      +     +  + +LYD+KLGL+ST   L  ++  +F+++DYP+W++W+G  SS
Sbjct: 242 LGFKSTNIQAKMQKLDNNFMLYDVKLGLISTKIDLISVKNVKFKKVDYPIWVIWIGDNSS 301

Query: 290 IEIRYRFEWRLG 301
           IEI Y+FEW  G
Sbjct: 302 IEITYKFEWSRG 313


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.142    0.428 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118575977
Number of Sequences: 2977
Number of extensions: 5114968
Number of successful extensions: 8914
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8908
Number of HSP's gapped (non-prelim): 2
length of query: 305
length of database: 189,106,746
effective HSP length: 52
effective length of query: 253
effective length of database: 157,985,422
effective search space: 39970311766
effective search space used: 39970311766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)