BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1457 (PAB1457) DE:SECRETORY PROTEIN KINASE
(814 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75050 secretory protein kinase PAB1457 - Pyrococcus abyssi... 1608 0.0
pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii ... 895 0.0
sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi|2129090|pir... 438 e-121
pir||G69094 secretory protein kinase - Methanobacterium thermoau... 391 e-107
gb|AAF40195.1|AF229646_7 (AF229646) CpaF [Caulobacter crescentus] 266 5e-70
pir||E83108 probable type II secretion system protein PA4302 [im... 249 1e-64
gi|10956073 secretory protein kinase [Chlorobium limicola] >gi|1... 249 1e-64
gb|AAG33866.1|AF317389_1 (AF317389) putative type IV NTPase [Hae... 238 1e-61
gb|AAD38172.2|AF152598_1 (AF152598) TadA [Actinobacillus actinom... 237 4e-61
emb|CAB92602.1| (AL356813) putative secretory protein [Streptomy... 235 1e-60
pir||D72529 hypothetical protein APE2208 - Aeropyrum pernix (str... 233 6e-60
gi|11498267 type II secretion system protein (gspE-2) [Archaeogl... 233 8e-60
gi|11497950 type II secretion system protein (gspE-1) [Archaeogl... 220 6e-56
gi|11498601 type II secretion system protein (gspE-3) [Archaeogl... 216 7e-55
pir||C75062 probable flagella-related protein I PAB1386 - Pyroco... 211 3e-53
pir||A71170 hypothetical protein PH0557 - Pyrococcus horikoshii ... 210 4e-53
gb|AAG19279.1| (AE005024) type II secretion system protein; GspE... 201 3e-50
emb|CAC11699.1| (AL445064) conserved hypothetical protein [Therm... 194 2e-48
gb|AAK42471.1| Flagella-related protein I, putative (FlaI) [Sulf... 192 1e-47
sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900 >gi|2128565|pir... 191 3e-47
pir||H72576 hypothetical protein APE1896 - Aeropyrum pernix (str... 191 3e-47
pir||T36677 probable secretory protein - Streptomyces coelicolor... 185 1e-45
gi|11498654 type II secretion system protein (gspE-4) [Archaeogl... 184 3e-45
pir||T44954 flagella-related protein I homolog [imported] - Meth... 181 2e-44
gb|AAG19376.1| (AE005032) type II secretion system protein; GspE... 180 5e-44
gb|AAK40475.1| Type II secretion system protein, virB homolog (g... 177 5e-43
pir||S75369 hypothetical protein c04002 - Sulfolobus solfataricu... 177 5e-43
gb|AAK42798.1| Type II secretion system protein, virB homolog (g... 176 6e-43
emb|CAB77317.1| (AL160312) putative protein kinase [Streptomyces... 152 2e-35
pir||G72658 probable Vir B11 APE0695 - Aeropyrum pernix (strain ... 150 8e-35
pir||D70788 probable trbB protein - Mycobacterium tuberculosis (... 147 5e-34
emb|CAC12033.1| (AL445065) export type III nucleotide binding pr... 141 3e-32
emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumophila] 132 2e-29
pir||C44020 hypothetical protein trbB [imported] - plasmid RK2 >... 129 2e-28
gb|AAA26405.1| (L05600) klbA [Plasmid RK2] 129 2e-28
gi|10955211 TrbB [Enterobacter aerogenes] >gi|7444255|pir||T0849... 123 7e-27
sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287 >gi|2128765|pir... 118 2e-25
dbj|BAA97435.1| (AB045234) component of type IV secretion system... 115 2e-24
gi|10956306 pXO1-59 [Bacillus anthracis] >gi|7474299|pir||C59098... 114 4e-24
gi|10954837 Probable trbB gene [Agrobacterium tumefaciens] >gi|2... 114 5e-24
dbj|BAA97442.1| (AB045235) component of type IV secretion system... 113 6e-24
gi|10955104 trbB [Agrobacterium tumefaciens] >gi|1730018|sp|P549... 111 2e-23
sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBB >gi... 109 9e-23
pir||G64460 hypothetical protein MJ1288 - Methanococcus jannaschii 108 3e-22
sp|Q58684|YC88_METJA HYPOTHETICAL PROTEIN MJ1288 >gi|2826386|gb|... 108 3e-22
pir||G71684 virB11 protein (virB11) RP292 - Rickettsia prowazeki... 106 1e-21
gb|AAG18825.1| (AE004986) type II secretion system protein; GspE... 105 2e-21
gi|10954776 probable trbB gene [Agrobacterium rhizogenes] >gi|10... 104 3e-21
pir||E64585 virB11 homolog - Helicobacter pylori (strain 26695) ... 104 5e-21
pir||G71927 cag island protein, DNA transfer protein - Helicobac... 104 5e-21
dbj|BAA28705.1| (AB011800) virB11 [Agrobacterium tumefaciens] 100 6e-20
gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog [Bartonella ... 99 2e-19
pir||F47301 VirB11 homolog - Bordetella pertussis 98 3e-19
sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BXAG58 virB11... 98 4e-19
gi|10954971 Probable virB11 gene [Agrobacterium tumefaciens] >gi... 98 4e-19
gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobium etli] 96 2e-18
gi|10955505 28 pct identical(12 gaps) to pir:C44020[TrbB of plas... 95 3e-18
gi|10955153 virB11 [Agrobacterium tumefaciens] >gi|138453|sp|P05... 94 6e-18
gb|AAA88655.1| (J03216) unknown protein [Plasmid Ti] 94 6e-18
gi|10954435 ATPase [Actinobacillus actinomycetemcomitans] >gi|10... 92 2e-17
gb|AAD15210.1| (M36786) virulence protein [Plasmid pTiC58] >gi|8... 90 9e-17
gi|10954809 probable virB11 gene [Agrobacterium rhizogenes] >gi|... 89 2e-16
gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucella suis] 86 1e-15
emb|CAA57033.1| (X81123) unnamed protein product [Escherichia coli] 85 4e-15
gb|AAF73904.1|AF226278_11 (AF226278) VirB11 [Brucella abortus] 85 4e-15
emb|CAA57032.1| (X81123) unnamed protein product [Escherichia coli] 85 4e-15
pir||E64697 conjugative transfer regulon protein - Helicobacter ... 81 6e-14
gb|AAB93500.1| (U75584) export type III nucleotide binding prote... 80 7e-14
pir||E71823 DNA transfer protein - Helicobacter pylori (strain J... 80 7e-14
pir||E71104 probable cell division control protein - Pyrococcus ... 78 5e-13
gb|AAF97748.1|AF226280_4 (AF226280) VirB11 [Campylobacter jejuni] 77 8e-13
gi|10956415 pXO2-25 [Bacillus anthracis] >gi|6470176|gb|AAF13630... 74 7e-12
>pir||B75050 secretory protein kinase PAB1457 - Pyrococcus abyssi (strain Orsay)
>gi|5458808|emb|CAB50295.1| (AJ248287) SECRETORY PROTEIN
KINASE [Pyrococcus abyssi]
Length = 814
Score = 1608 bits (4117), Expect = 0.0
Identities = 814/814 (100%), Positives = 814/814 (100%)
Query: 1 MSEEKKKVRSWIDEILSGDNLTLEAILKKSESERKEEKKEETPLPKTESLSLASILAGVQ 60
MSEEKKKVRSWIDEILSGDNLTLEAILKKSESERKEEKKEETPLPKTESLSLASILAGVQ
Sbjct: 1 MSEEKKKVRSWIDEILSGDNLTLEAILKKSESERKEEKKEETPLPKTESLSLASILAGVQ 60
Query: 61 KKEETEKETETLPFAVLEKTGGAPRLEDILKRSRPQERKEEGVGIQGILVPSSKYAGQVV 120
KKEETEKETETLPFAVLEKTGGAPRLEDILKRSRPQERKEEGVGIQGILVPSSKYAGQVV
Sbjct: 61 KKEETEKETETLPFAVLEKTGGAPRLEDILKRSRPQERKEEGVGIQGILVPSSKYAGQVV 120
Query: 121 RVLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEE 180
RVLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEE
Sbjct: 121 RVLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEE 180
Query: 181 RRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGID 240
RRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGID
Sbjct: 181 RRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGID 240
Query: 241 RPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNAT 300
RPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNAT
Sbjct: 241 RPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNAT 300
Query: 301 LPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGT 360
LPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGT
Sbjct: 301 LPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGT 360
Query: 361 GSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK 420
GSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK
Sbjct: 361 GSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK 420
Query: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELFEK 480
NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELFEK
Sbjct: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELFEK 480
Query: 481 YHDKIGKYKDMEYVELNEEDTFEVISIGPDLSARRHKVTHVWRRKVKDGEKLVKIRTASG 540
YHDKIGKYKDMEYVELNEEDTFEVISIGPDLSARRHKVTHVWRRKVKDGEKLVKIRTASG
Sbjct: 481 YHDKIGKYKDMEYVELNEEDTFEVISIGPDLSARRHKVTHVWRRKVKDGEKLVKIRTASG 540
Query: 541 KELVLTQDHPVFVLLGRDVARRDAGNVKVGDEIAVLNTRPDFSVLSPPAMPELLSEPFNY 600
KELVLTQDHPVFVLLGRDVARRDAGNVKVGDEIAVLNTRPDFSVLSPPAMPELLSEPFNY
Sbjct: 541 KELVLTQDHPVFVLLGRDVARRDAGNVKVGDEIAVLNTRPDFSVLSPPAMPELLSEPFNY 600
Query: 601 ELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLTVDINHNYVANGIVVSNCMGTIHSNSAR 660
ELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLTVDINHNYVANGIVVSNCMGTIHSNSAR
Sbjct: 601 ELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLTVDINHNYVANGIVVSNCMGTIHSNSAR 660
Query: 661 ETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEGESIQLNFL 720
ETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEGESIQLNFL
Sbjct: 661 ETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEGESIQLNFL 720
Query: 721 YKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEKGLRRIDEVG 780
YKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEKGLRRIDEVG
Sbjct: 721 YKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEKGLRRIDEVG 780
Query: 781 AQIREFYIDEEEFFKKIQREAATMEISRRVKEFI 814
AQIREFYIDEEEFFKKIQREAATMEISRRVKEFI
Sbjct: 781 AQIREFYIDEEEFFKKIQREAATMEISRRVKEFI 814
>pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii
>gi|3257058|dbj|BAA29741.1| (AP000003) 1136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1136
Score = 895 bits (2287), Expect = 0.0
Identities = 461/595 (77%), Positives = 516/595 (86%), Gaps = 21/595 (3%)
Query: 3 EEKKKVRSWIDEILSGDNLTLEAILKKSESERKEEKKEETPLPKTESLSLASILAGVQKK 62
EEKK+ RSWIDEILS DNLTLEAILKKS E K ++ PKTESLS +IL
Sbjct: 5 EEKKRARSWIDEILSSDNLTLEAILKKSSGEGKSTPEK----PKTESLSRGNILP--TPS 58
Query: 63 EETEKETETLPFAVLEKTGGAPRLEDILKRSRPQERKEEGVGI--QGILVP--SSKYAGQ 118
+ ++ E LP A LEKTG A RLEDILK+ +ERKEE V I Q IL P S KY GQ
Sbjct: 59 PQKQEAGEGLPLAFLEKTG-ALRLEDILKKPE-EERKEEEVPIRIQEILTPPTSKKYTGQ 116
Query: 119 VVRVLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNL 178
+++VLDVYGNVRI+RVKGEAVPIYE+S+PELS++EEKLLKLVRDRAIVEIQIDPESIPNL
Sbjct: 117 ILKVLDVYGNVRIIRVKGEAVPIYELSIPELSKDEEKLLKLVRDRAIVEIQIDPESIPNL 176
Query: 179 EERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIG 238
EERR++FLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIG
Sbjct: 177 EERRRIFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIG 236
Query: 239 IDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVN 298
+RPVYVWHRRFGMCKTNI F +ERE+LTIIERIAREVGRRIDQQNPLLDARLPDGSRVN
Sbjct: 237 TNRPVYVWHRRFGMCKTNITFTSEREILTIIERIAREVGRRIDQQNPLLDARLPDGSRVN 296
Query: 299 ATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAG 358
ATLPPISLDGPT+TIRKFKKDPLTIIDLIKFRTL+S+VAAFLWLLVDGLGVKPANILVAG
Sbjct: 297 ATLPPISLDGPTITIRKFKKDPLTIIDLIKFRTLNSEVAAFLWLLVDGLGVKPANILVAG 356
Query: 359 GTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDL 418
GTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDL
Sbjct: 357 GTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDL 416
Query: 419 VKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGK-EFIGKLVDEL 477
VKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALY FS IQL NG+ IG LV+EL
Sbjct: 417 VKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYDFSIIQLSNGRFVLIGDLVEEL 476
Query: 478 FEKYHDKIGKYKDMEYVELNEEDTFEVISIGPDLSARRHKVTHVWRRKVKDGEKLVKIRT 537
F+KY DKI +YKD+EY+ELN+ED FEV+S+GPDL A +H V+ VWRR+V++GEKL++I+T
Sbjct: 477 FKKYSDKIERYKDLEYIELNDEDRFEVVSVGPDLKANKHIVSRVWRRRVREGEKLIRIKT 536
Query: 538 ASGKELVLTQDHPVFVLLGRDVARRDAGNVKVGDEIAVLNTRPDFSVLSPPAMPE 592
+G E++LT+ HP+F DV R++AGN+KVGD +AV+ ++PP P+
Sbjct: 537 RTGNEVILTRSHPLFAFSNGDVVRKEAGNLKVGDRVAVM--------MNPPKPPQ 583
Score = 376 bits (956), Expect = e-103
Identities = 181/214 (84%), Positives = 203/214 (94%)
Query: 601 ELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLTVDINHNYVANGIVVSNCMGTIHSNSAR 660
+L + GDV WDEVV V+E+D K LG+EY+YDLTV+ +HNYVANGI+VSNCMGTIHSNSAR
Sbjct: 923 QLIAEGDVYWDEVVSVEEVDPKELGIEYVYDLTVEDDHNYVANGILVSNCMGTIHSNSAR 982
Query: 661 ETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEGESIQLNFL 720
ETIIRLESPPMNVP+IMIPALDIIIMQVRYHTRKKGTIRR+TEIAEVSGIEGESIQLNFL
Sbjct: 983 ETIIRLESPPMNVPRIMIPALDIIIMQVRYHTRKKGTIRRMTEIAEVSGIEGESIQLNFL 1042
Query: 721 YKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEKGLRRIDEVG 780
YKYDPAKDE+VRTEVPSRFL ILSYHTGM ++E++ EIEKRKLVLDWMIEKG+RRIDEVG
Sbjct: 1043 YKYDPAKDEIVRTEVPSRFLNILSYHTGMGMDELYYEIEKRKLVLDWMIEKGIRRIDEVG 1102
Query: 781 AQIREFYIDEEEFFKKIQREAATMEISRRVKEFI 814
AQIREFYIDEEEFFKK++REA T+E+S+RVKEFI
Sbjct: 1103 AQIREFYIDEEEFFKKLEREATTIEMSKRVKEFI 1136
>sp|Q58191|Y781_METJA HYPOTHETICAL PROTEIN MJ0781 >gi|2129090|pir||E64397 klbA homolog -
Methanococcus jannaschii >gi|1591480|gb|AAB98770.1|
(U67522) type II secretion system protein [Methanococcus
jannaschii]
Length = 721
Score = 438 bits (1115), Expect = e-121
Identities = 283/694 (40%), Positives = 400/694 (56%), Gaps = 62/694 (8%)
Query: 122 VLDVYGNVRI------VRVKGEAVPIYEISVPELSREEEKLLKLVRDRAI-VEIQIDPES 174
+LD Y +++I V +K E IY + VPE+ + L KL +D ++ QI
Sbjct: 73 ILDTY-SIKIDEIEMEVVIKREEGYIYYL-VPEIDKINMSLSKLTKDHLNHIKSQISDLG 130
Query: 175 IPNLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEI 234
+ ++ R+ M L+ ++ L++ + G L+ + DD LEE+
Sbjct: 131 LIEYDQIREYLTNF------SMRYNLAIPYIDSLAKFFYLVIGRLGLLEVPLNDDRLEEV 184
Query: 235 MVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDG 294
MV G + PV+V+HR+ MC+TNIV E+ IIE IA V R ID + P+LDA LPDG
Sbjct: 185 MVNGYNVPVFVFHRKHQMCETNIVLD-RNEVDRIIESIANLVNRPIDSRVPMLDAFLPDG 243
Query: 295 SRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDG-LGVKPAN 353
SRVNAT I+++G TLTIRKF K+PLT+IDLI F TL D AAFLW V+G G KPAN
Sbjct: 244 SRVNATTADITMNGATLTIRKFSKNPLTVIDLINFGTLDIDTAAFLWQAVEGYFGAKPAN 303
Query: 354 ILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRP--PNVEGKG 411
L+AGGTGSGKTT LN L++F +ER+I+IEDT ELQ+P +H +++ TRP P + +
Sbjct: 304 TLIAGGTGSGKTTLLNVLSLFSMYNERIITIEDTPELQIPHKHVIKMVTRPARPGMP-EY 362
Query: 412 EITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEF-I 470
E+TMDDL+KN LRMRPDRI VGEVRG EA ++ AMNTGHDGAL Y I L +G I
Sbjct: 363 EVTMDDLIKNALRMRPDRIFVGEVRGKEAHSLLVAMNTGHDGALAYDEPIYLSDGNIINI 422
Query: 471 GKLVDELFEKYHDKIGKYKD-MEYVELNEEDTFEVISIGPDLSARRHKVTHVWRRKVKDG 529
G+ VD+ F+KY + I K + ++++ E+ + L ++ VWR+K
Sbjct: 423 GEFVDKFFKKYKNSIKKEDNGFGWIDIGNENIYIKSFNKLSLIIEDKRILRVWRKKYSG- 481
Query: 530 EKLVKIRTASGKELVLTQDHPVFVLLGRDVARRDAGNVKVGDEIAVLNTRPDFSVLSPPA 589
KL+KI T + +E+ LT DHPV++ +V +A VKVGD I +
Sbjct: 482 -KLIKITTKNRREITLTHDHPVYISKTGEVLEINAEMVKVGDYIYI-------------- 526
Query: 590 MPELLSEPFNYELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLTVDINHNYVA---NGIV 646
P N + DEV++V+ +D G ++YDLTV+ NH Y+A G
Sbjct: 527 -------PKN------NTINLDEVIKVETVDYNG----HIYDLTVEDNHTYIAGKNEGFA 569
Query: 647 VSNCMGTIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAE 706
VSNC GT+H+NSA E I+RL SPPMNVPKIM+ AL+ II Q R K TIRR+ I E
Sbjct: 570 VSNCSGTLHANSADEAILRLTSPPMNVPKIMLTALNFIINQQRIRRAGK-TIRRILGIVE 628
Query: 707 V--SGIEGESIQLNFLYKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLV 764
+ G EG LY+Y+ KD L R + + + + G++ EE+ + E RK V
Sbjct: 629 IVKGGGEGHEFAKTTLYEYNGLKDSLERRGI-CMWEEEVCEIAGITKEELLRDRENRKKV 687
Query: 765 LDWMIEKGLRRIDEVGAQIREFYIDEEEFFKKIQ 798
L ++ + +R+++ V I + +D E+ + I+
Sbjct: 688 LSYLYKNNIRKLENVSDYIMRYQVDPEKLLRSIR 721
>pir||G69094 secretory protein kinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622833|gb|AAB86174.1| (AE000927)
secretory protein kinase [Methanobacterium
thermoautotrophicum]
Length = 526
Score = 391 bits (994), Expect = e-107
Identities = 197/390 (50%), Positives = 279/390 (71%), Gaps = 18/390 (4%)
Query: 87 EDILKRSRPQERKEEGVGIQGILV-PSSKYAGQVVRVLDVYGNVRIVRVKGEAVPIYEIS 145
E+ + R + + E ++ +L P K A V + DV ++G+ +P Y++S
Sbjct: 24 EEPPREERKERQAESEFKVEKVLEKPKPKPASPRVDLKDVE------IIEGDLIPQYKVS 77
Query: 146 VPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLSEGRV 205
+P+ S +E +LL +R++ +VE+ + ++E F+ EV++ ++ V
Sbjct: 78 LPKFSEKERELLNEIREK-LVEVAVSKGEEFRIDE--STFMSEVKEFLRMKGVR----NV 130
Query: 206 ELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTEREL 265
+ L++ I Q M+GYG+LDPL++DD+LEEIMVIG+ +PV+V+HR+ GM TN+VF + ++
Sbjct: 131 DKLAKQISQEMLGYGELDPLIKDDDLEEIMVIGVKKPVFVYHRKLGMMITNVVFNNDDDI 190
Query: 266 LTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTIID 325
I++ IAR+V RRIDQQ P+LDARLPDGSRVNAT+PP+S DG TLTIRKF+KDP T++D
Sbjct: 191 KAIVDLIARQVNRRIDQQTPILDARLPDGSRVNATIPPVSPDGSTLTIRKFRKDPFTVVD 250
Query: 326 LIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIE 385
LI F+T+SS +AAFLW+ DGLGVKP N +VAGGTGSGKTTTLN+++ F+PP+ER+I+IE
Sbjct: 251 LINFKTMSSHLAAFLWVCTDGLGVKPCNAIVAGGTGSGKTTTLNTVSAFVPPTERIITIE 310
Query: 386 DTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFT 445
DT ELQLP H +R+ETRPPN+EGKGE+ MD LVKN+LR RPDR+IVGEVRG EA T+FT
Sbjct: 311 DTLELQLPHTHVLRMETRPPNIEGKGELDMDTLVKNSLRQRPDRVIVGEVRGSEAITLFT 370
Query: 446 AMNTGHDGALYYFSEIQLPNGKEFIGKLVD 475
A+NTGH G F + +E I +L++
Sbjct: 371 ALNTGHSG----FGTLHANTARETITRLIN 396
Score = 137 bits (342), Expect = 4e-31
Identities = 67/140 (47%), Positives = 103/140 (72%)
Query: 652 GTIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIE 711
GT+H+N+ARETI RL +PPMNVP+IMIPALD IIMQ R + + G+IRR+TE+AEV G+E
Sbjct: 380 GTLHANTARETITRLINPPMNVPRIMIPALDFIIMQNRMYRPEGGSIRRITEVAEVVGME 439
Query: 712 GESIQLNFLYKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEK 771
++QLN +++++ D++ + S+ L+ ++ +S+ EI EIE+R+LVL++M ++
Sbjct: 440 EGNVQLNRVFEWNSVADKVEYVGIASQTLREIAELRAISINEIEEEIERRRLVLEYMADE 499
Query: 772 GLRRIDEVGAQIREFYIDEE 791
+R IDEVG I E+Y D +
Sbjct: 500 NIRSIDEVGRYIHEYYRDPD 519
>gb|AAF40195.1|AF229646_7 (AF229646) CpaF [Caulobacter crescentus]
Length = 501
Score = 266 bits (674), Expect = 5e-70
Identities = 138/272 (50%), Positives = 191/272 (69%), Gaps = 10/272 (3%)
Query: 188 EVRKMVKEMAP----TLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPV 243
E+R +V E+ ++S E L + I+ +++GYG L+PL+ D++ +IMV G R
Sbjct: 113 EIRDIVAELVAIKNVSMSVAEQEHLVQDIINDVLGYGPLEPLLARDDIADIMVNGAHRVF 172
Query: 244 YVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP 303
+ + TN+ F+ +L+ I +RI +VGRR+D+ +P+ DARLPDGSRVN PP
Sbjct: 173 IEVGGKVQL--TNVRFRDNLQLMNICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPP 230
Query: 304 ISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSG 363
++LDGPTLTIRKFKKD LT+ +L++F ++S + A L ++ G N++++GGTGSG
Sbjct: 231 LALDGPTLTIRKFKKDKLTMKNLVEFASISPEGARVLGVI----GACRCNLVISGGTGSG 286
Query: 364 KTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTL 423
KTT LN++ FI P+ERV++ ED AELQL H VRLETRPPN+EG G +TM DLVKN L
Sbjct: 287 KTTLLNTMTAFIDPTERVVTCEDAAELQLQQPHVVRLETRPPNLEGSGAVTMRDLVKNCL 346
Query: 424 RMRPDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
RMRP+RIIVGEVRGPEA + AMNTGHDG++
Sbjct: 347 RMRPERIIVGEVRGPEAFDLLQAMNTGHDGSM 378
>pir||E83108 probable type II secretion system protein PA4302 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950524|gb|AAG07690.1|AE004846_7 (AE004846) probable
type II secretion system protein [Pseudomonas
aeruginosa]
Length = 421
Score = 249 bits (629), Expect = 1e-64
Identities = 138/312 (44%), Positives = 207/312 (66%), Gaps = 13/312 (4%)
Query: 150 SREEEKL--LKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAP----TLSEG 203
SR+E+ + LKL R I++ +ID + + LE R ++ V + V E +S
Sbjct: 16 SRQEQDIQALKLRLHRYIID-EIDEDGMNLLEGARSAVVQYVSEKVCEYGSRHQLAISRY 74
Query: 204 RVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTER 263
++ L+E +V + G+G L+ L+RD + EI+V G R V+V R + ++++ F +
Sbjct: 75 ELDRLAEEVVDELTGFGPLEILLRDPGVSEILVNGPGR-VFV-EREGRLYQSDLRFIDDH 132
Query: 264 ELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTI 323
+L +I+RI +GRR+D+ +P++DARLPDGSRVNA +PP++LDGP ++IRKF ++ L
Sbjct: 133 HVLRVIQRILAPLGRRLDESSPMVDARLPDGSRVNAIIPPVALDGPCISIRKFSQELLRS 192
Query: 324 IDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVIS 383
DL+ ++++ + FL V + NIL++GGTG+GKTT LN ++ FI ER+++
Sbjct: 193 ADLLAYQSVDEALLEFLRQAVS----RRCNILISGGTGTGKTTLLNVISGFIDERERIVT 248
Query: 384 IEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
IEDTAELQL +H VRLETRPPN EG GE+T DL++N LRMRPDRII+GE+RG E +
Sbjct: 249 IEDTAELQLGHDHVVRLETRPPNAEGYGEVTARDLIRNALRMRPDRIILGEIRGVEVLDV 308
Query: 444 FTAMNTGHDGAL 455
AMNTGHDG++
Sbjct: 309 LQAMNTGHDGSM 320
>gi|10956073 secretory protein kinase [Chlorobium limicola]
>gi|1688242|gb|AAB36933.1| (U77780) secretory protein
kinase [Chlorobium limicola]
Length = 474
Score = 249 bits (629), Expect = 1e-64
Identities = 143/301 (47%), Positives = 202/301 (66%), Gaps = 10/301 (3%)
Query: 173 ESIPNLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLE 232
ES+ R ++ ++ V + +E P + R L+++L ++G G L+PL+ D +
Sbjct: 76 ESLTPDRLRNELGVQLVALIEEEALPLNVQERNRLVADL-KNEIMGLGPLEPLIADPGVS 134
Query: 233 EIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLP 292
EIMV G + +YV + + T+I F + L+ II++I VGRRID+ +P++DARLP
Sbjct: 135 EIMVNG-HQNIYV-EKNGCIYPTDIRFNDDAHLMKIIDKIVSRVGRRIDECSPMVDARLP 192
Query: 293 DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPA 352
DGSRVNA +PP++L+GP LTIR+F PL + D I+ T++ +A L LV VK
Sbjct: 193 DGSRVNAVIPPLALEGPVLTIRRFAVVPLQMRDFIQKNTVTPQMAELLSALVK---VK-C 248
Query: 353 NILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE 412
NI+++GGTGSGKTT LN L+ FIP SER++++EDTAELQL +H VR+ETR PN+EGKGE
Sbjct: 249 NIIISGGTGSGKTTLLNILSGFIPSSERIVTLEDTAELQLQQDHVVRMETRLPNIEGKGE 308
Query: 413 ITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGK 472
ITM LVKN LRMRPDRI++GEVR E M AMNTGHDG+L + I + ++ +G+
Sbjct: 309 ITMRALVKNXLRMRPDRIVIGEVRTSEVIEMLQAMNTGHDGSL---TTIHANSSRDALGR 365
Query: 473 L 473
L
Sbjct: 366 L 366
>gb|AAG33866.1|AF317389_1 (AF317389) putative type IV NTPase [Haemophilus aphrophilus]
Length = 426
Score = 238 bits (602), Expect = 1e-61
Identities = 138/312 (44%), Positives = 199/312 (63%), Gaps = 17/312 (5%)
Query: 149 LSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPT----LSEGR 204
L++E++ L R+ V +D E I L+ R + + E+ ++V +A L+
Sbjct: 2 LTKEQQIFL-----RSEVLSNLDIEKIDALQSERNLLVNELVQIVNRVASKSGTYLTSAD 56
Query: 205 VELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMC-KTNIVFKTER 263
+++E++ + GYG L L+ DD + +I+V G D VW R G+ KT+ F +
Sbjct: 57 TLVMAEIVADEIEGYGPLRDLMADDTINDILVNGPDD---VWIERAGILEKTSKEFVSNE 113
Query: 264 ELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTI 323
+L I +R+ VGRRID +PL+D+RLPDGSR+N + PI+LDG +++IRKF K+ T+
Sbjct: 114 QLTDIAKRLVARVGRRIDDGSPLVDSRLPDGSRLNVVIAPIALDGTSVSIRKFSKNKKTL 173
Query: 324 IDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVIS 383
+L+ F +++ ++A FL + NI+V+GGTGSGKTT LN+L+ +I SERVI+
Sbjct: 174 QELVNFGSMTREMANFLIIAARSR----VNIIVSGGTGSGKTTLLNALSNYISHSERVIT 229
Query: 384 IEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
+EDTAEL+L H VRLETR VE GE+TM DLV N LRMRP+RIIVGE RG EA M
Sbjct: 230 LEDTAELRLEQPHVVRLETRLAGVEHTGEVTMKDLVINALRMRPERIIVGECRGGEAFQM 289
Query: 444 FTAMNTGHDGAL 455
AMNTGHDG++
Sbjct: 290 LQAMNTGHDGSM 301
>gb|AAD38172.2|AF152598_1 (AF152598) TadA [Actinobacillus actinomycetemcomitans]
Length = 426
Score = 237 bits (598), Expect = 4e-61
Identities = 136/312 (43%), Positives = 199/312 (63%), Gaps = 17/312 (5%)
Query: 149 LSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPT----LSEGR 204
L+++++ LL R+ V +D E I L+ R + E+ ++V +A L+
Sbjct: 2 LTKQQKILL-----RSEVLSNLDIEKIDELQSERSSLVNELVQIVNRVANKSGAYLTSAD 56
Query: 205 VELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMC-KTNIVFKTER 263
+++E++ + GYG L L+ DD + +I+V G P +W R G+ KT+ F +
Sbjct: 57 TLVMAEIVADEIEGYGPLRDLMADDTINDILVNG---PNDIWVERAGILEKTDKEFVSNE 113
Query: 264 ELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTI 323
+L I +R+ VGRRID +PL+D+RLPDGSR+N + PI+LDG +++IRKF K+ T+
Sbjct: 114 QLTDIAKRLVARVGRRIDDGSPLVDSRLPDGSRLNVVIAPIALDGTSISIRKFSKNKKTL 173
Query: 324 IDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVIS 383
+L+ F +++ ++A FL + NI+V+GGTGSGKTT LN+L+ +I +ERVI+
Sbjct: 174 QELVNFGSMTREMANFLIIAARSR----VNIIVSGGTGSGKTTLLNALSNYISHTERVIT 229
Query: 384 IEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
+EDTAEL+L H VRLETR VE GE+TM DLV N LRMRP+RIIVGE RG EA M
Sbjct: 230 LEDTAELRLEQPHVVRLETRLAGVEHTGEVTMQDLVINALRMRPERIIVGECRGGEAFQM 289
Query: 444 FTAMNTGHDGAL 455
AMNTGHDG++
Sbjct: 290 LQAMNTGHDGSM 301
>emb|CAB92602.1| (AL356813) putative secretory protein [Streptomyces coelicolor
A3(2)]
Length = 445
Score = 235 bits (594), Expect = 1e-60
Identities = 138/305 (45%), Positives = 192/305 (62%), Gaps = 9/305 (2%)
Query: 152 EEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLSEGRVELLSEL 211
E+ L+ R + + EI + S ERR R + ++ P LS L
Sbjct: 18 EDGHLVASYRAKLLEEIDLAEMSALATAERRARLERVLGHIISREGPVLSTVERSQLIRR 77
Query: 212 IVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKT-NIVFKTERELLTIIE 270
+V +G G L+PL+ D ++ EIMV G D ++ R G + + F + +L+ IE
Sbjct: 78 VVDEALGLGILEPLLEDASITEIMVNGPDA---IFVERAGRVEQLPLRFASHDQLMQTIE 134
Query: 271 RIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFR 330
RI V RR+D+ NP++DARLP G RVN +PP+SL G TLTIR+F + T+ +LI
Sbjct: 135 RIVSTVNRRVDESNPMVDARLPSGERVNVIIPPLSLTGATLTIRRFPRS-FTLQELIGLG 193
Query: 331 TLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAEL 390
+L ++ L+LL GL NI+V+G TG+GKTT LN+L+ IP S+R+I+IED+AEL
Sbjct: 194 SLDENM---LYLLA-GLVQARFNIIVSGATGTGKTTLLNALSGLIPESDRIITIEDSAEL 249
Query: 391 QLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTG 450
QL H +RLE+RPPNVEG+G IT+ DLV+N+LRMRPDRI+VGEVRG E+ M AM+TG
Sbjct: 250 QLQQAHVIRLESRPPNVEGQGRITIRDLVRNSLRMRPDRIVVGEVRGGESLDMLQAMSTG 309
Query: 451 HDGAL 455
HDG+L
Sbjct: 310 HDGSL 314
>pir||D72529 hypothetical protein APE2208 - Aeropyrum pernix (strain K1)
>gi|5105908|dbj|BAA81220.1| (AP000063) 476aa long
hypothetical protein [Aeropyrum pernix]
Length = 476
Score = 233 bits (588), Expect = 6e-60
Identities = 128/290 (44%), Positives = 189/290 (65%), Gaps = 12/290 (4%)
Query: 179 EERRKVFLREVRKMVK----EMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEI 234
E+ R+ +R+++++V +MA + E + +++N +GYG +D L++D+ LE+I
Sbjct: 38 EKEREFLIRQIKRIVNIYRIKMASEVEEISWSKILYYMIRNNVGYGPIDVLMKDEYLEDI 97
Query: 235 MVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDG 294
G+ RPVYVWH+ + K+NIVF+ ER+L +I +A G+ I P+LDA LP+G
Sbjct: 98 SCDGVGRPVYVWHQEYESIKSNIVFEDERQLDHMILLLAHRAGKHISVAFPVLDAVLPEG 157
Query: 295 SRVNATL-PPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPAN 353
RV AT +S G T TIRKFK PL+I+DLI T+S D+AA+LWL+ + P
Sbjct: 158 HRVAATFRREVSTQGSTFTIRKFKATPLSIVDLIIGGTISPDIAAYLWLMAEYR--MPG- 214
Query: 354 ILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPP---NVEGK 410
++ G TGSGKTTTLN++A + P+ ++++IEDT E++LP E+WV+L +RP E +
Sbjct: 215 -IIMGVTGSGKTTTLNAIATLLRPNVKIVTIEDTPEIKLPHENWVQLVSRPSFSVTGESR 273
Query: 411 GEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSE 460
GEI++ DLV+ +LR RPD IIVGEVRG EA +F A+ TGH G SE
Sbjct: 274 GEISLYDLVRVSLRYRPDVIIVGEVRGEEAYVLFQALATGHGGLTTIHSE 323
Score = 71.4 bits (172), Expect = 4e-11
Identities = 78/306 (25%), Positives = 133/306 (42%), Gaps = 35/306 (11%)
Query: 506 SIGPDLSARRHKVTHVWRRKVKDGEKLVKIRTASGKELVLTQDHPVFVLLGRDVARRDAG 565
+I PD++A ++W ++ T SGK L + + V D
Sbjct: 195 TISPDIAA------YLWLMAEYRMPGIIMGVTGSGKTTTLNAIATLLRPNVKIVTIEDTP 248
Query: 566 NVKVGDEIAV-LNTRPDFSVLSPPAMPELLSEPFNYELSSIGDVAWDEVVEVDEIDAKGL 624
+K+ E V L +RP FSV E E Y+L + +V+ V E+ +
Sbjct: 249 EIKLPHENWVQLVSRPSFSVTG-----ESRGEISLYDLVRVSLRYRPDVIIVGEVRGEEA 303
Query: 625 GVEYLYDLTVDINHNYVANGIVVSNCMGTIHSNSARETIIRLESPPMNVPKIMIPALDII 684
V + +A G + TIHS + I RL SPPMN+P+ IP +
Sbjct: 304 YVLF----------QALATG---HGGLTTIHSETIEAMIRRLTSPPMNIPEGYIPLVKFA 350
Query: 685 IMQVRYHTRKKGT------IRRVTEIAEVSGIEGE-SIQLNFLYKYDPAKDELVRTEVPS 737
+ R + R+VT++ E++G E +I++ +++P E S
Sbjct: 351 LAVKRVRLPDPASPEGHRIARKVTDVWEITGPSSEDAIEVA---RWNPFTKEHEHFMEKS 407
Query: 738 RFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIEKGLRRIDEVGAQIREFYIDEEEFFKKI 797
+ + G++ +E+ EIE+RKLVL WM + G+RR EV I ++Y ++ +++
Sbjct: 408 VAIAEIGKLVGLTKDEVLAEIERRKLVLLWMAKSGIRRYREVAPIIFKYYYSPDDVYERA 467
Query: 798 QREAAT 803
+E T
Sbjct: 468 AKELKT 473
>gi|11498267 type II secretion system protein (gspE-2) [Archaeoglobus fulgidus]
>gi|7450288|pir||C69332 type II secretion system protein
(gspE-2) homolog - Archaeoglobus fulgidus
>gi|2649960|gb|AAB90582.1| (AE001059) type II secretion
system protein (gspE-2) [Archaeoglobus fulgidus]
Length = 511
Score = 233 bits (587), Expect = 8e-60
Identities = 132/322 (40%), Positives = 201/322 (61%), Gaps = 9/322 (2%)
Query: 131 IVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVR 190
IV + E +Y P +S EE +++ + D + + S+ +LEER +V +R +
Sbjct: 45 IVENEDEFRNVYYALEPTVSSEEAEVISALYDDLKKILVLQDVSV-DLEERAEVLVRAIE 103
Query: 191 KMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRF 250
K+ KE A + ++ + + ++ GYG +DPL+ D N+E+I G + P++++H+++
Sbjct: 104 KLSKEYAVSFTDNFYSRMLYYLFRDFFGYGLIDPLMEDTNVEDISCDGYNIPIFIYHQKY 163
Query: 251 GMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL-PPISLDGP 309
G +TNIV E+ L ++ R+ + G+ I NP++DA LPDGSR+ AT ++ G
Sbjct: 164 GNVETNIVLDQEK-LDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATFGTEVTPRGS 222
Query: 310 TLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLN 369
+ TIRKF +PLT IDLI+ T+ S V A+LWL ++ + +V G T SGKTTTLN
Sbjct: 223 SFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIE----HKFSAIVVGETASGKTTTLN 278
Query: 370 SLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDR 429
++ MFIPP +V+SIEDT E++L E+W+ TR G+GEI M DL++ LR RPD
Sbjct: 279 AIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTR--TGMGEGEIDMYDLLRAALRQRPDY 336
Query: 430 IIVGEVRGPEARTMFTAMNTGH 451
IIVGEVRG EA+T+F AM+TGH
Sbjct: 337 IIVGEVRGREAQTLFQAMSTGH 358
Score = 81.5 bits (198), Expect = 3e-14
Identities = 44/148 (29%), Positives = 86/148 (57%), Gaps = 4/148 (2%)
Query: 653 TIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIE- 711
T+H+ + + RLES P+ VP+ M+ LDI ++Q + R +RR E+ E+ GI+
Sbjct: 363 TLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMW-VRGNTRLRRTKEVNEILGIDP 421
Query: 712 -GESIQLNFLYKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIE 770
+++ +N K+DP +D+ + +P + L+ ++ G+S++E++ E+ RK L+ M++
Sbjct: 422 VDKNLLVNQFVKWDPKEDKHIEVSMPKK-LEKMADFLGVSVQEVYDEMLSRKRYLELMLK 480
Query: 771 KGLRRIDEVGAQIREFYIDEEEFFKKIQ 798
+G+R EV I +Y + E K++
Sbjct: 481 RGIRNYKEVTRYIHAYYRNPELAMTKME 508
>gi|11497950 type II secretion system protein (gspE-1) [Archaeoglobus fulgidus]
>gi|7450291|pir||B69292 type II secretion system protein
(gspE-1) homolog - Archaeoglobus fulgidus
>gi|2650297|gb|AAB90897.1| (AE001081) type II secretion
system protein (gspE-1) [Archaeoglobus fulgidus]
Length = 595
Score = 220 bits (554), Expect = 6e-56
Identities = 139/399 (34%), Positives = 222/399 (54%), Gaps = 27/399 (6%)
Query: 61 KKEETEKETETLPFAVLEKTGGAPRLEDILKRSRPQERKEEGVGIQGILVPSSKYAGQVV 120
KK+E E T F +++K L + R+ + +E +G + + G V
Sbjct: 62 KKKEDEVPRRTAVFEIIKKGAKEEFLGEETYRTLSKRLSQEFEPPEGWI----EVEGYPV 117
Query: 121 RVLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEE 180
V +V I+ + + IY ++ P+LS EEEK++K V R + +P+ I +
Sbjct: 118 YGRFVISSVHILYNEEDNEFIYHVNEPKLSEEEEKIVKNVIGR-LEYYAANPKEIGD--- 173
Query: 181 RRKVFLREVRKMVKEMAPTLSEGRVELLSE-------LIVQNMIGYGKLDPLVRDDNLEE 233
+V + K++ L RV L I + I YGK+ P++ D +E+
Sbjct: 174 -------KVGTLKKKIDSILEAYRVNLEGSDYFRVLYHIFKRTILYGKITPIMYDPMIED 226
Query: 234 IMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPD 293
I G + +Y++HR++ +TN++F EL + + +A++ G+ I P++DA +PD
Sbjct: 227 ISCNGYGKYIYIFHRKYTNLRTNVIFDDPDELDSFVVNLAQKCGKHISIAEPMVDATMPD 286
Query: 294 GSRVNATLPPISLD-GPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPA 352
GSR+ TL D G T TIRKF+++P+T IDLI ++T SS+ A+LWL ++
Sbjct: 287 GSRIQMTLGREVTDHGSTFTIRKFREEPVTPIDLIAWKTFSSEQMAYLWLCIEN----KK 342
Query: 353 NILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE 412
+++ AGGT SGKTT++N++++FIP ++++IEDT EL LP E+W+ TR KG
Sbjct: 343 SLIFAGGTASGKTTSMNAISLFIPRRSKIVTIEDTRELMLPHENWIPAVTRDAFHGEKGA 402
Query: 413 ITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
+ M DL++ LR RP+ IIVGEVRG EA T+F AM TGH
Sbjct: 403 VDMYDLLRAALRQRPEYIIVGEVRGREALTLFQAMATGH 441
Score = 86.2 bits (210), Expect = 1e-15
Identities = 47/147 (31%), Positives = 89/147 (59%), Gaps = 4/147 (2%)
Query: 653 TIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEG 712
T+H++S I RLE+PP+ VP+ M+ ALDII +Q + + + +RR EIAE+ G++
Sbjct: 446 TLHADSISGAIHRLENPPIGVPRPMLEALDIISIQAQTYVGDR-RVRRNMEIAEIVGLDA 504
Query: 713 ES--IQLNFLYKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIE 770
+ ++ + ++++D KDE S+ L+ + G S+ E++ E+E+R+ VL++M+
Sbjct: 505 HTKMLRTSTVFQWDSVKDEHAMVGT-SKALEEIRRQRGWSVRELNEELERRRRVLEFMLS 563
Query: 771 KGLRRIDEVGAQIREFYIDEEEFFKKI 797
G+R +V A I + ++ E K++
Sbjct: 564 NGIRMFKDVSAVIHTYQVNPERAMKRL 590
>gi|11498601 type II secretion system protein (gspE-3) [Archaeoglobus fulgidus]
>gi|7450290|pir||D69374 type II secretion system protein
(gspE-3) homolog - Archaeoglobus fulgidus
>gi|2649599|gb|AAB90245.1| (AE001035) type II secretion
system protein (gspE-3) [Archaeoglobus fulgidus]
Length = 569
Score = 216 bits (545), Expect = 7e-55
Identities = 139/410 (33%), Positives = 228/410 (54%), Gaps = 22/410 (5%)
Query: 58 GVQKKEETEKETETLPF---AVLEKTGGAPRLEDILKRSRPQE-------RKEEGVGIQG 107
G +++E E+E E L LE + E+ILK R ++ RKE V G
Sbjct: 13 GKEQEESEEEEAEQLADYEKEALEAIEEVKQKEEILKVKREKKKIIGLPKRKEYSVEEHG 72
Query: 108 ILVPSSKYAGQVVR----VLDVYGNVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDR 163
LV S G + +L+ Y I+ + E Y++ P L E ++ +
Sbjct: 73 ELVEYSPPVGWSIVEEYWLLEPYCKAFIIYNEEEQEYRYQVVEPRLDPYETEVYGHLS-- 130
Query: 164 AIVEIQIDPESIPNLEERRKVFLREV-RKMVKEMAPTLSEGRVELLSELIVQNMIGYGKL 222
+++ +++ + + ++V L+E ++ E+ L + + I+++ + Y K+
Sbjct: 131 VLLKDKLEENFFEDGKVAKEVVLKETFDDLISEVGFDLEDRSYYKIWYYIMRDFLYYDKI 190
Query: 223 DPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQ 282
PL+ D LE+I G+ + +YV+HR + +TN++F EL + + +A++ G+ I
Sbjct: 191 TPLMLDKMLEDISCNGVRKYMYVFHRNYTNLRTNVIFDDPDELDSFVVNLAQKCGKHISI 250
Query: 283 QNPLLDARLPDGSRVNATLPPISLD-GPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLW 341
P++DA +PDGSR+ TL D G T TIRKF+++P+T IDLI ++T SS+ A+LW
Sbjct: 251 AEPMVDATMPDGSRIQMTLGREVTDHGSTFTIRKFREEPVTPIDLIAWKTFSSEQMAYLW 310
Query: 342 LLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLE 401
L ++ +++ AGGT SGKTT++N++++FIP ++++IEDT EL LP E+W+
Sbjct: 311 LCIEN----KKSLIFAGGTASGKTTSMNAISLFIPRRSKIVTIEDTRELMLPHENWIPAV 366
Query: 402 TRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
TR KG + M DL++ LR RP+ IIVGEVRG EA T+F AM TGH
Sbjct: 367 TRDAFHGEKGAVDMYDLLRAALRQRPEYIIVGEVRGREALTLFQAMATGH 416
Score = 79.6 bits (193), Expect = 1e-13
Identities = 48/152 (31%), Positives = 90/152 (58%), Gaps = 8/152 (5%)
Query: 653 TIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEG 712
T+H++S I RLE+PP+ VP+ M+ ALDII +Q + + + +RR EIAE+ G++
Sbjct: 421 TLHADSISGAIHRLENPPIGVPRPMLEALDIISIQAQTYVGDR-RVRRNMEIAEIVGLDA 479
Query: 713 ES--IQLNFLYKYDPAKDE--LVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWM 768
+ ++ + ++++D KDE +V T S+ L+ + G S+ E++ E+E+R+ VL++M
Sbjct: 480 HTKMLRTSTVFQWDSVKDEHAMVGT---SKALEEIRRQRGWSVRELNEELERRRRVLEFM 536
Query: 769 IEKGLRRIDEVGAQIREFYIDEEEFFKKIQRE 800
+E +R V I + ++ + I +E
Sbjct: 537 LEHNVRDFKRVSNIIHTYQTKPDKIMEAISKE 568
>pir||C75062 probable flagella-related protein I PAB1386 - Pyrococcus abyssi
(strain Orsay) >gi|5458905|emb|CAB50392.1| (AJ248287)
PUTATIVE FLAGELLA-RELATED PROTEIN I [Pyrococcus abyssi]
Length = 537
Score = 211 bits (531), Expect = 3e-53
Identities = 128/309 (41%), Positives = 186/309 (59%), Gaps = 15/309 (4%)
Query: 150 SREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFL-----REVRKMVK-EMAPTLSEG 203
+REEE+ +L++DR I+E+ E IP +E + FL V +VK T+++
Sbjct: 83 TREEEEKYQLIKDR-ILELAPTRE-IPEEQEEFERFLDNLFEEAVLSLVKGRKGLTITKD 140
Query: 204 RVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTER 263
+E LI +++IG G L+P+ RD LE+I +IG + V V H+ F TNI +K
Sbjct: 141 EMEKFRYLIKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWKDNI 199
Query: 264 ELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTLTIRKFKKDPLT 322
EL ++ ++ +GR + +NP++D LPDGSR+N P +SL GP+ TIRKF PL+
Sbjct: 200 ELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDVSLKGPSATIRKFAATPLS 259
Query: 323 IIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVI 382
I LI + T+S+++AA+LWL ++ +I V G T SGKTTTLN++ FI P +V
Sbjct: 260 ITQLIAWGTMSAEIAAYLWLAIE----YGMSIFVCGETASGKTTTLNAIIPFIKPGSKVF 315
Query: 383 SIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEART 442
+ EDT E+Q+P W RL TR E + +T+ DL+K LR RP+ IIVGE+RG E
Sbjct: 316 TAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAEGNI 374
Query: 443 MFTAMNTGH 451
F AM TGH
Sbjct: 375 AFQAMQTGH 383
>pir||A71170 hypothetical protein PH0557 - Pyrococcus horikoshii
>gi|3256963|dbj|BAA29646.1| (AP000002) 537aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 537
Score = 210 bits (530), Expect = 4e-53
Identities = 125/312 (40%), Positives = 186/312 (59%), Gaps = 21/312 (6%)
Query: 150 SREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLSEGR----- 204
+REEE+ KL++DR + ++ P ++ E ++ F R + + +E +L +GR
Sbjct: 83 NREEEEKYKLIKDRIL---ELAPTR--DIPEEQEEFERFLDSLFEEAVLSLVKGRKGLKI 137
Query: 205 ----VELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFK 260
+E L+ +++IG G L+P+ RD LE+I +IG + V V H+ F TNI +K
Sbjct: 138 TKEEMEKFRYLVKRDIIGIGPLEPIARDPYLEDIHIIGANY-VSVVHKIFQHLPTNIKWK 196
Query: 261 TERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTLTIRKFKKD 319
EL ++ ++ +GR + +NP++D LPDGSR+N P ISL GP+ TIRKF
Sbjct: 197 DNIELADYLKNLSERIGRPVSDRNPIVDGTLPDGSRINIIYSPDISLKGPSATIRKFAAT 256
Query: 320 PLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSE 379
PL+I LI + T+S+++AA+LWL ++ +I V G T SGKTTTLN++ FI P
Sbjct: 257 PLSITQLIAWGTMSAEIAAYLWLAIE----YGMSIFVCGETASGKTTTLNAIIPFIKPGS 312
Query: 380 RVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPE 439
+V + EDT E+Q+P W RL TR E + +T+ DL+K LR RP+ IIVGE+RG E
Sbjct: 313 KVYTAEDTPEVQVPHPTWQRLVTRERGPE-ESRVTLFDLLKAALRSRPNYIIVGEIRGAE 371
Query: 440 ARTMFTAMNTGH 451
F AM TGH
Sbjct: 372 GNIAFQAMQTGH 383
>gb|AAG19279.1| (AE005024) type II secretion system protein; GspE2 [Halobacterium
sp. NRC-1]
Length = 561
Score = 201 bits (505), Expect = 3e-50
Identities = 111/315 (35%), Positives = 186/315 (58%), Gaps = 16/315 (5%)
Query: 142 YEISVPELSREEEKLLKL----VRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMA 197
Y + P L E+ +L +RD I + DP+ +R V + ++++++ E +
Sbjct: 93 YHVVEPHLDDFEQTVLDQLYDDIRDALIYDATTDPD------DREAVLIAQMQRLLSEYS 146
Query: 198 PTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNI 257
++ L + + G+ KLDP+++D ++E++ G P++V+H + +TNI
Sbjct: 147 IDVTPNAFHRLFYYLHRTFEGFEKLDPVMQDPHIEDVSCDGYGLPLFVYHTDYTDIETNI 206
Query: 258 VFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL-PPISLDGPTLTIRKF 316
++ ++EL + + R+A++ GR I +P+ + LPDGSR L ++ G TIRK+
Sbjct: 207 TYE-QQELDSFVVRLAQQSGRHISIGDPVTETTLPDGSRAELALGEEVTPRGSAFTIRKY 265
Query: 317 KKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIP 376
++P T L+ + T S D A+LWL ++ ++L AGGT SGKTT++N+++MF+P
Sbjct: 266 SEEPFTPATLVDYDTFSLDQMAYLWLAIES----NKSLLFAGGTASGKTTSMNAVSMFVP 321
Query: 377 PSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVR 436
P ++++IEDT EL L ++W+ TR + G ITM DL+++ LR RP+ IIVGEVR
Sbjct: 322 PRAKILTIEDTRELALYHDNWLSSVTRGADGGGGDTITMYDLLRSALRHRPEYIIVGEVR 381
Query: 437 GPEARTMFTAMNTGH 451
G EA T+F AMNTGH
Sbjct: 382 GEEAMTLFQAMNTGH 396
Score = 76.1 bits (184), Expect = 1e-12
Identities = 44/147 (29%), Positives = 81/147 (54%), Gaps = 5/147 (3%)
Query: 653 TIHSNSARETIIRLESPPMNVPKIMIPALDIIIMQVRYHTRKKGTIRRVTEIAEVSGIEG 712
T+H++S + I RLE+ P+NVP+ MI +LDI+ +Q H + +RR + IAE+ GI+
Sbjct: 401 TMHADSVQTVINRLENDPINVPRAMIQSLDILCVQTLTHVGDE-RVRRSSVIAEIEGIDQ 459
Query: 713 ESIQLNF--LYKYDPAKDELVRTEVPSRFLQILSYHTGMSLEEIHLEIEKRKLVLDWMIE 770
+ L++ +++DP +D+ + + S L + G S ++ E+ RK VL +++E
Sbjct: 460 RTGDLDYSTAFEWDPTRDDFEQRD--SNVLDEIQDERGWSRSDLLRELRNRKRVLQYLVE 517
Query: 771 KGLRRIDEVGAQIREFYIDEEEFFKKI 797
+ + A I E+Y E ++
Sbjct: 518 QDVTDYRRFTALINEYYAQPERVVARV 544
>emb|CAC11699.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 538
Score = 194 bits (489), Expect = 2e-48
Identities = 107/282 (37%), Positives = 168/282 (58%), Gaps = 7/282 (2%)
Query: 171 DPESIPNLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDN 230
+ E N+E+ K + +K + TL + + + + + +IG G L+PL+RD +
Sbjct: 112 EEEQEKNIEDVYKKTVSVGSNKIKRNSVTLEKPLYDKMLYNVKKEIIGLGPLEPLIRDSH 171
Query: 231 LEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDAR 290
+E+I IG + VY+ H+ FG T+I F + L+ +R++ VGR + + P++DA
Sbjct: 172 IEDISGIGPE-DVYIVHKIFGSMPTDITFGSMERLMRFSKRLSERVGRPVSDKRPIVDAT 230
Query: 291 LPDGSRVNATLPP-ISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGV 349
LPDGSR++ IS GP+ TIRKF + PL+I++LIK+ T+S + AA+LWL ++
Sbjct: 231 LPDGSRLSIVYSTDISQRGPSFTIRKFSEIPLSILNLIKYNTMSYEEAAYLWLALE---- 286
Query: 350 KPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEG 409
++ V G T SGKTT +N++ FI P ++ S EDT E++ P + W +L TR E
Sbjct: 287 YGQSVFVCGETASGKTTVVNAIIPFIRPESKIFSAEDTPEIRAPQKAWQQLVTRESGAE- 345
Query: 410 KGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
+ +T+ DL++ LR RP+ IIVGE+RG E F AM TGH
Sbjct: 346 ESRVTLYDLLRTALRSRPNYIIVGEIRGAEGAMAFQAMQTGH 387
>gb|AAK42471.1| Flagella-related protein I, putative (FlaI) [Sulfolobus
solfataricus]
Length = 513
Score = 192 bits (483), Expect = 1e-47
Identities = 111/305 (36%), Positives = 177/305 (57%), Gaps = 20/305 (6%)
Query: 148 ELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLSEGRVEL 207
E+ EEK K + + E P +EE+ + R + K++ ++ ++ + E
Sbjct: 68 EIEEIEEKFAKTIGNT---------EPPPTVEEKEILMRRVLDKILTKIRISVPK---EY 115
Query: 208 LSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLT 267
V++ + G L+PL+RD +E+I + G+ +Y+ H+ FG +T+++ + E EL
Sbjct: 116 AIYHFVRDKLYSGILEPLIRDPFIEDISIPGLGH-IYIVHKVFGPMRTSLLIENEEELDN 174
Query: 268 IIERIAREVGRRIDQQNPLLDARLPDGSRVNATLP-PISLDGPTLTIRKFKKDPLTIIDL 326
+I ++ + R + P++DA LPDGSRVN IS G LT+RKF K P+++ L
Sbjct: 175 LIISLSEKTYRPVSHNRPIIDASLPDGSRVNFVYGIDISRRGSNLTVRKFSKIPISVTQL 234
Query: 327 IKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIED 386
I F TLS +AA++W+++D + N+ V G T SGKTTTLN++ FIPP+ ++++IED
Sbjct: 235 ISFGTLSPLLAAYIWMMLD----EGMNLFVCGETASGKTTTLNAITAFIPPNLKIVTIED 290
Query: 387 TAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTA 446
T EL +P +WV TR G+G + + DL+K LR RP+ I+VGE+R E F A
Sbjct: 291 TPELTVPHSNWVAEVTR--ETGGEGSVKLFDLLKAALRQRPNYILVGEIRDKEGNVAFQA 348
Query: 447 MNTGH 451
M TGH
Sbjct: 349 MQTGH 353
>sp|Q58310|Y900_METJA HYPOTHETICAL PROTEIN MJ0900 >gi|2128565|pir||D64412 hypothetical
protein MJ0900 - Methanococcus jannaschii
>gi|1591575|gb|AAB98903.1| (U67533) type II secretion
system protein [Methanococcus jannaschii]
Length = 551
Score = 191 bits (480), Expect = 3e-47
Identities = 119/329 (36%), Positives = 180/329 (54%), Gaps = 25/329 (7%)
Query: 142 YEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLS 201
Y + P L EEKL + I+E+ E+ ++EE +V R K
Sbjct: 75 YIVIEPTLETAEEKLKYKMILNKILELAPYEETPKSVEEFEEVLTRLFNACTKVTEAVGE 134
Query: 202 EG-----------RVELLSE-------LIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPV 243
EG ++++ E ++ +++IG G L+P+ RD LE+I VIG +
Sbjct: 135 EGFFQRIFRFADNKIKITPEERDKFLYILKRDLIGLGNLEPIGRDPYLEDIHVIG-PKNC 193
Query: 244 YVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL-P 302
+V H+ FGM TNI ++ E EL ++ + +GR + NP++D LPDGSR+N
Sbjct: 194 HVVHKIFGMLPTNITWEDEIELADYLKNLGERMGRPVSDANPIVDGTLPDGSRINIIYST 253
Query: 303 PISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGS 362
+S GP+ TIRKF P+++ LI + T S++VAA+LWL ++ +I + G T S
Sbjct: 254 DVSPKGPSFTIRKFTDVPISVTQLISWGTFSTEVAAYLWLCLE----YGMSIFICGETAS 309
Query: 363 GKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNT 422
GKTTTLN++ FI P+ ++ S EDT E++ P W +L TR E + +T+ DL++
Sbjct: 310 GKTTTLNAILPFIKPNSKIFSCEDTPEVKPPHPVWQQLVTRERGPE-ESRVTLFDLLRAA 368
Query: 423 LRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
LR RP+ IIVGE+R EA F AM TGH
Sbjct: 369 LRSRPNYIIVGEIRSVEAAVAFQAMQTGH 397
>pir||H72576 hypothetical protein APE1896 - Aeropyrum pernix (strain K1)
>gi|5105588|dbj|BAA80901.1| (AP000062) 579aa long
hypothetical protein [Aeropyrum pernix]
Length = 579
Score = 191 bits (480), Expect = 3e-47
Identities = 115/331 (34%), Positives = 187/331 (55%), Gaps = 34/331 (10%)
Query: 146 VPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAP------- 198
V E R E L++L+ D I + + ++ + EE++++ L + K+V +
Sbjct: 95 VVEPPRPPEDLVRLI-DYKIALVLSEEDAPRSSEEKKRILLAALDKVVAVTSSERIAGGN 153
Query: 199 --------TLSEGRVEL-------LSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPV 243
+ GR+ + L ++ +G G L+P +RD LE+I G+ PV
Sbjct: 154 GGNGSWQYAVKRGRIVIPERYYNYLKYHFIREKVGVGPLEPFLRDPYLEDISCNGVG-PV 212
Query: 244 YVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL-P 302
YV H+ F ++++ F+TE EL I ++ ++G+ I P++DA LPDGSR+N
Sbjct: 213 YVVHKMFRSLESSVRFETEGELDDFILKLGEKIGKPISHARPVVDATLPDGSRINIVFGS 272
Query: 303 PISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGS 362
+SL G TIRK K P+++ LIK+ T + +AA++W++++ + ++ + G T S
Sbjct: 273 DVSLKGSNFTIRKVSKIPISVTQLIKWGTFDARIAAYMWMMLE----EGMSVFICGETAS 328
Query: 363 GKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE--ITMDDLVK 420
GKTT+LN++++FI P ++++IEDTAE+ LP +W R TR GK E +TM DL++
Sbjct: 329 GKTTSLNAISVFIRPDAKIVTIEDTAEVVLPHPNWTRELTRN---TGKPETSVTMFDLLR 385
Query: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
LR RP+ IIVGE+RG E F AM TGH
Sbjct: 386 AALRQRPNYIIVGEIRGAEGNIAFQAMQTGH 416
>pir||T36677 probable secretory protein - Streptomyces coelicolor
>gi|4539574|emb|CAB38493.1| (AL035636) putative
secretory protein [Streptomyces coelicolor A3(2)]
Length = 523
Score = 185 bits (466), Expect = 1e-45
Identities = 103/266 (38%), Positives = 157/266 (58%), Gaps = 8/266 (3%)
Query: 189 VRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVW-H 247
V + ++E L + + +E + ++G G L+PL+ D ++ +++V DR VW
Sbjct: 154 VAQALREQGRVLGDAEILGAAEQLRSELVGSGPLEPLLADPSVTDVLVSAPDR---VWVD 210
Query: 248 RRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPISLD 307
R G+ + F + + +R+A GRR+D P +DARLPDG+R++A LPP+++D
Sbjct: 211 RGGGLELAPVSFPDAAAVRRLAQRLATVAGRRLDDARPWVDARLPDGTRLHAVLPPVAVD 270
Query: 308 GPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTT 367
L +R + T+ +L T+ L L+ + LV+GGTGSGKTT
Sbjct: 271 CTCLALRVVRPRAFTLRELAAAGTVPPGGDRVLRALLRAR----LSFLVSGGTGSGKTTL 326
Query: 368 LNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRP 427
L++L + P ER++ ED+AEL+ H VRLETRP N EG G +T++DLV+ LRMRP
Sbjct: 327 LSALLGLVGPDERIVLAEDSAELRPDHPHVVRLETRPANQEGAGLVTLEDLVRQALRMRP 386
Query: 428 DRIIVGEVRGPEARTMFTAMNTGHDG 453
DR++VGEVRGPE + A+NTGH+G
Sbjct: 387 DRLVVGEVRGPEVVHLLAALNTGHEG 412
>gi|11498654 type II secretion system protein (gspE-4) [Archaeoglobus fulgidus]
>gi|7450287|pir||A69381 type II secretion system protein
(gspE-4) homolog - Archaeoglobus fulgidus
>gi|2649537|gb|AAB90188.1| (AE001030) type II secretion
system protein (gspE-4) [Archaeoglobus fulgidus]
Length = 628
Score = 184 bits (463), Expect = 3e-45
Identities = 102/259 (39%), Positives = 157/259 (60%), Gaps = 12/259 (4%)
Query: 200 LSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVF 259
+++ + + L ++++ +G G L+P +RD +E+I G+ P++V H+ F K+ I F
Sbjct: 220 VTKEQFKALEYALIRDKVGLGVLEPYIRDKYIEDISCSGLG-PIFVEHKIFKGLKSVIEF 278
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLP-PISLDGPTLTIRKFKK 318
+ E L I R+A +G+ + ++P++DA LPDGSR+N IS +G TIRKF +
Sbjct: 279 RDEETLNKFIIRLAERIGKPVTYKDPIVDATLPDGSRINIVFGNDISKNGSNFTIRKFNE 338
Query: 319 DPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPS 378
P +++ LI+F +L +A +LWLL+ + + + G T SGKTT LN++ FI P
Sbjct: 339 TPFSVLQLIEFGSLDYMIAGYLWLLIS----EGMSGFICGETASGKTTLLNAITAFIRPE 394
Query: 379 ERVISIEDTAELQLPIEHWVRLETRPPN-----VEGKG-EITMDDLVKNTLRMRPDRIIV 432
+V+SIEDT ELQ+P ++W R TR EG G ++TM DL+K LR RP+ I+V
Sbjct: 395 AKVVSIEDTPELQVPHKNWTREVTRGSTRAGGIGEGGGSDVTMFDLLKAALRQRPNYILV 454
Query: 433 GEVRGPEARTMFTAMNTGH 451
GE+RG E F AM TGH
Sbjct: 455 GEIRGVEGNIAFQAMQTGH 473
>pir||T44954 flagella-related protein I homolog [imported] - Methanococcus
voltae >gi|2104781|gb|AAB57833.1| (U97040) putative
flagella-related protein I [Methanococcus voltae]
Length = 552
Score = 181 bits (455), Expect = 2e-44
Identities = 109/307 (35%), Positives = 174/307 (56%), Gaps = 13/307 (4%)
Query: 146 VPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPTLSEGRV 205
+PE E K+L + D + ++ + + PN +K L + K+ + +++ +
Sbjct: 104 IPESDDEFSKVLIDIFD-TVTKVNKNANN-PN----KKSKLGLMNKLTNSNSIAITKVQR 157
Query: 206 ELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTEREL 265
+ L+ +++IG G L+P+ RD +E+I VIG V H+ F M TNIV++ + ++
Sbjct: 158 DKFVYLLRRDLIGIGNLEPIKRDPTIEDIHVIGPKNTQLV-HKTFDMLPTNIVWEDDGDM 216
Query: 266 LTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLP-PISLDGPTLTIRKFKKDPLTII 324
++ + +GR + P++D +PDGSR+N +SL GP+ TIRKF P +I
Sbjct: 217 SNYLKNLCERMGRPVSDATPIVDGSMPDGSRINILYSNDVSLKGPSFTIRKFSDTPTSIT 276
Query: 325 DLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISI 384
+I + T+S ++AA+LWL ++ +I V G T SGKTTTLN++ FI P +V S
Sbjct: 277 QIISWGTMSPEIAAYLWLCLE----YGMSIFVCGETASGKTTTLNAIMPFIKPKSKVFSC 332
Query: 385 EDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMF 444
EDTAE++ P W +L TR E + +T+ DL++ LR RP+ IIVGE+R E F
Sbjct: 333 EDTAEVKPPNPVWQQLLTRERGPE-ESRVTLFDLLRAALRSRPNYIIVGEIRSVEGAVAF 391
Query: 445 TAMNTGH 451
AM TGH
Sbjct: 392 QAMQTGH 398
>gb|AAG19376.1| (AE005032) type II secretion system protein; GspE3 [Halobacterium
sp. NRC-1]
Length = 629
Score = 180 bits (452), Expect = 5e-44
Identities = 105/277 (37%), Positives = 158/277 (56%), Gaps = 6/277 (2%)
Query: 200 LSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVF 259
+SE E + + ++++G+G L+P++RD E+I VIG YV H +GM +T + F
Sbjct: 224 VSETTYENIRYQLNRDIVGFGPLEPVMRDPYNEDIHVIG-PTGCYVDHGTYGMLETTVDF 282
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTLTIRKFKK 318
T E + + +G + +P++D+ LPDGSR+N +SL GP+LTIR+
Sbjct: 283 GTPDEFDGWLRNMGERMGDPVSDSDPIVDSTLPDGSRINIIYSDDVSLKGPSLTIRQGDD 342
Query: 319 DPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPS 378
PL++ + K+ TLS ++AA+LWL ++ + V G T SGKTTTLNS+ FIP
Sbjct: 343 VPLSVGQITKWGTLSPELAAYLWLCLEN----EQTVFVVGETASGKTTTLNSIMSFIPRD 398
Query: 379 ERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGP 438
++ + EDTAE+ P + W +L TR E ++ M DLV LR RPD IIVGEVRG
Sbjct: 399 SKIYTAEDTAEVIPPHDTWQQLLTREGQGENSADVDMFDLVAAALRSRPDYIIVGEVRGE 458
Query: 439 EARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVD 475
E R F A TGH L + + + + F G+ ++
Sbjct: 459 EGRMAFQAAQTGHPVMLTFHASDIVSMIQRFTGEPIN 495
>gb|AAK40475.1| Type II secretion system protein, virB homolog (gspE-1) [Sulfolobus
solfataricus]
Length = 483
Score = 177 bits (444), Expect = 5e-43
Identities = 118/346 (34%), Positives = 191/346 (55%), Gaps = 26/346 (7%)
Query: 119 VVRVLDVYG--NVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIP 176
++ +L Y N +++ + + Y+++ P L + E ++L +I+E S+P
Sbjct: 10 IMNILQEYSVLNAKVIIYEENGIGYYKVNEPNLDQNEIEILN-----SILEYIYSTPSVP 64
Query: 177 NLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMV 236
N+EE V K++K + +G +E + + + IGY +L + D +EEI
Sbjct: 65 NIEET-------VVKILKNKGIS-DQGIIEKIIYYL-RKRIGYDELTVPLADPYVEEIEC 115
Query: 237 IGIDRPVYVWHR---RFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPD 293
G PV V HR RF TNI+ + E +L +IE++A + + + P L+ LP+
Sbjct: 116 KGFSYPVTVVHRIVTRFPRLYTNIILEQEDHVLKVIEKLANKADKPVSIAKPYLEFSLPE 175
Query: 294 GSRVNATLP-PISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPA 352
G RV AT+ +SL G T IRKF P++ I LIK ++SS + A++W L+D KP
Sbjct: 176 GHRVAATVSREVSLPGSTFDIRKFPLKPISPISLIKNESISSLMLAYIWFLLD---YKPF 232
Query: 353 NILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE 412
L+ G TGSGKTT LNS+ I P +VI+IEDT E+ + ++W+R R ++ + E
Sbjct: 233 -FLIIGSTGSGKTTLLNSILSMINPFFKVITIEDTPEINIIHDNWIRFFAR-QSISSQFE 290
Query: 413 ITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYF 458
+++ DL K +LR RPD +++GE+RG E + A +GH G+L F
Sbjct: 291 VSLMDLAKLSLRYRPDYLVIGEIRGKEIEALVHASASGH-GSLATF 335
>pir||S75369 hypothetical protein c04002 - Sulfolobus solfataricus
>gi|1707774|emb|CAA69572.1| (Y08257) virB homolog
[Sulfolobus solfataricus]
Length = 483
Score = 177 bits (444), Expect = 5e-43
Identities = 118/346 (34%), Positives = 191/346 (55%), Gaps = 26/346 (7%)
Query: 119 VVRVLDVYG--NVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIP 176
++ +L Y N +++ + + Y+++ P L + E ++L +I+E S+P
Sbjct: 10 IMNILQEYSVLNAKVIIYEENGIGYYKVNEPNLDQNEIEILN-----SILEYIYSTPSVP 64
Query: 177 NLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMV 236
N+EE V K++K + +G +E + + + IGY +L + D +EEI
Sbjct: 65 NIEET-------VVKILKNKGIS-DQGIIEKIIYYL-RKRIGYDELTVPLADPYVEEIEC 115
Query: 237 IGIDRPVYVWHR---RFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPD 293
G PV V HR RF TNI+ + E +L +IE++A + + + P L+ LP+
Sbjct: 116 KGFSYPVTVVHRIVTRFPRLYTNIILEQEDHVLKVIEKLANKADKPVSIAKPYLEFSLPE 175
Query: 294 GSRVNATLP-PISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPA 352
G RV AT+ +SL G T IRKF P++ I LIK ++SS + A++W L+D KP
Sbjct: 176 GHRVAATVSREVSLPGSTFDIRKFPLKPISPISLIKNESISSLMLAYIWFLLD---YKPF 232
Query: 353 NILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE 412
L+ G TGSGKTT LNS+ I P +VI+IEDT E+ + ++W+R R ++ + E
Sbjct: 233 -FLIIGSTGSGKTTLLNSILSMINPFFKVITIEDTPEINIIHDNWIRFFAR-QSISSQFE 290
Query: 413 ITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYF 458
+++ DL K +LR RPD +++GE+RG E + A +GH G+L F
Sbjct: 291 VSLMDLAKLSLRYRPDYLVIGEIRGKEIEALVHASASGH-GSLATF 335
>gb|AAK42798.1| Type II secretion system protein, virB homolog (gspE-2) [Sulfolobus
solfataricus]
Length = 515
Score = 176 bits (443), Expect = 6e-43
Identities = 116/330 (35%), Positives = 175/330 (52%), Gaps = 11/330 (3%)
Query: 128 NVRIVRVKGEAVPIYEISVPELSREEEKLLKLVRDRAIVEIQIDPESIPNLEERRKVFLR 187
+V I + + + Y ++ P+L + E K+L + D I ++ N + +
Sbjct: 50 DVEIYIAEKDGIGFYLVNEPQLDQRENKILLAILDGLIYSAST---AVSNKQIDLEKLQE 106
Query: 188 EVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWH 247
+V K+ ++ R + I Y L + D +EEI ++ P+ V H
Sbjct: 107 DVLKISAKLGVIGDVKRNLKKYMYYITREIKYSILQAPMSDPFVEEIELVSPTTPISVVH 166
Query: 248 RRFG---MCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATLPPI 304
R +TNIV +E ++ ++ER+A GR + PL D LP+G RV +
Sbjct: 167 SRHSEWPRLETNIVLGSELKVRRLVERLASLGGRSVSTATPLQDFMLPEGHRVAVSYGEE 226
Query: 305 SLDGPTLTIRKFKKDPLTIIDLI-KFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSG 363
G T IRKF + PLTIIDLI K+ TLS +A +LW++ + K LV G TGSG
Sbjct: 227 ISRGTTFNIRKFPEKPLTIIDLIYKYGTLSDLMAVYLWIIAEA---KLFTFLV-GPTGSG 282
Query: 364 KTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTL 423
KTT LN+L M + P + ++IEDT EL+LP ++W++ TRP N EG +I+ +LV+ +L
Sbjct: 283 KTTALNALLMLLNPLAKYLTIEDTPELKLPHKYWIQFYTRPSNYEGSKDISYYELVRLSL 342
Query: 424 RMRPDRIIVGEVRGPEARTMFTAMNTGHDG 453
R RPD IIVGEVRG E + A+ +GH G
Sbjct: 343 RYRPDYIIVGEVRGKEIEWLVQAVASGHGG 372
>emb|CAB77317.1| (AL160312) putative protein kinase [Streptomyces coelicolor A3(2)]
Length = 435
Score = 152 bits (380), Expect = 2e-35
Identities = 99/248 (39%), Positives = 140/248 (55%), Gaps = 15/248 (6%)
Query: 216 MIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIARE 275
+ G G+L PL+ D +E I + G D V+V + + V +T+ EL+ +I+ +
Sbjct: 83 LFGVGRLQPLLDDPEVENIDINGCDH-VFVGYSDGRETRGEAVAETDEELIELIQILGAY 141
Query: 276 VG---RRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTL 332
G R D NP LD RLPDGSR++A + P L+IR+ + + I DL+ TL
Sbjct: 142 SGLSSRPFDSANPQLDLRLPDGSRLSAVMDVARR--PALSIRRARMGKVFISDLVGNGTL 199
Query: 333 SSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQL 392
+ ++ FL V NI++AG T +GKTT L +LA IPP ER+I++E EL L
Sbjct: 200 TPELGHFLACAVRAR----KNIMIAGATNAGKTTLLRALANEIPPHERLITVERALELGL 255
Query: 393 PI-----EHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAM 447
+ V E R PN EG+G ITM +LV+ +LRM P R+IVGEV G E TM AM
Sbjct: 256 DTFPELHPNVVAFEERLPNSEGQGAITMAELVRRSLRMNPSRVIVGEVLGDEIVTMLNAM 315
Query: 448 NTGHDGAL 455
+ G+DG+L
Sbjct: 316 SQGNDGSL 323
>pir||G72658 probable Vir B11 APE0695 - Aeropyrum pernix (strain K1)
>gi|5104356|dbj|BAA79671.1| (AP000060) 474aa long
hypothetical Vir B11 [Aeropyrum pernix]
Length = 474
Score = 150 bits (374), Expect = 8e-35
Identities = 98/241 (40%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Query: 214 QNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKT-ERELLTIIERI 272
+ M GYG+L PL+ D ++EEI G R V V H ++ K E E ++ ++
Sbjct: 95 KRMSGYGRLYPLIIDGHIEEIAFEGPGRGVSVIHSLVPGRWIDVDLKLGEDEANSLALQL 154
Query: 273 AREVGRRIDQQNPLLDARLPDGSRVNATLP-PISLDGPTLTIRKFKKDPLTIIDLIKFRT 331
AR+ GR + PL + +G RV T +S G + IRK+ + P+T+ DL+ R
Sbjct: 155 ARKAGRSLSLAQPLAEGLTGEGHRVAVTFSREVSRFGSSFVIRKYPEKPVTMADLVASRV 214
Query: 332 LSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQ 391
L+ AA+LWLLV+ I+V+G GSGKTT L +LA IPP RVI+IEDT E++
Sbjct: 215 LTPLQAAYLWLLVESQQF----IVVSGPMGSGKTTLLQALAGLIPPFYRVITIEDTPEIR 270
Query: 392 LPIEHWVRLETRPP-NVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTG 450
L HW L TRPP E E+ ++ L++ LR R + IIVGEVRG EAR + A +G
Sbjct: 271 LYNRHWDSLVTRPPLPGESMVEVDLEALLRFALRRRAEYIIVGEVRGREARLLAQAAASG 330
Query: 451 H 451
H
Sbjct: 331 H 331
>pir||D70788 probable trbB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960083|emb|CAA17981.1| (AL022121) trbB
[Mycobacterium tuberculosis]
Length = 352
Score = 147 bits (367), Expect = 5e-34
Identities = 94/260 (36%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 203 GRVELLSELIV--QNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVW-HRRFGMCKTNIVF 259
G E+L+ L V + G G L+PL+ D +++V D VW G+ ++ I F
Sbjct: 3 GDTEVLANLRVLQTELTGAGILEPLLSADGTTDVLVTAPDS---VWVDDGNGLRRSQIRF 59
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPD------GSRVNATLPPISLDGPTLTI 313
E + + +R+A GRR+D P +D +L R++A LPP++ G L++
Sbjct: 60 ADESAVRRLAQRLALAAGRRLDDAQPWVDGQLTGIGVGGFAVRLHAVLPPVATQGTCLSL 119
Query: 314 RKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAM 373
R + + L + AA LV + LV GGTG+GKTT L ++
Sbjct: 120 RVLRPATQDLAALAAAGAIDPAAAA----LVADIVTARLAFLVCGGTGAGKTTLLAAMLG 175
Query: 374 FIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVG 433
+ P ER++ +ED AEL H V+L R NVEG GE+T+ LV+ LRMRPDRI+VG
Sbjct: 176 AVSPDERIVCVEDAAELAPRHPHLVKLVARRANVEGIGEVTVRQLVRQALRMRPDRIVVG 235
Query: 434 EVRGPEARTMFTAMNTGHDG 453
EVRG E + A+NTGH+G
Sbjct: 236 EVRGAEVVDLLAALNTGHEG 255
>emb|CAC12033.1| (AL445065) export type III nucleotide binding protein (Vir B11)
related protein [Thermoplasma acidophilum]
Length = 399
Score = 141 bits (352), Expect = 3e-32
Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 18/255 (7%)
Query: 200 LSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVF 259
+++ ++E ++ V M GK+ PL+ D ++E+I V+ + VY++HR G +TNI F
Sbjct: 29 ITKNQIEKFADDYVNRM---GKIQPLIDDPDIEDITVLP-ENYVYIYHRSMGSMRTNIFF 84
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPDGS-RVNATLPPISLDGPTLTIRKFKK 318
TE E +A+ G+ + NP++D + G+ R+N +S PT++IRK +
Sbjct: 85 -TEYEAGRFARHLAQRSGKTLSVYNPIVD--ISQGNLRINIVHHDVSR--PTISIRKLRS 139
Query: 319 DPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPS 378
+P ++LI T S+DV A+LW + NIL+ G T SGKTT LN++AMFI P
Sbjct: 140 NPFNPVNLIGNGTASADVMAYLWEAIQAR----LNILITGSTASGKTTLLNAIAMFIDPL 195
Query: 379 ERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGP 438
V+ +EDT EL LP ++ ++ RP G +++ DL+ PD +I GE+RGP
Sbjct: 196 LNVVLVEDTHELSLPGKNIFYMQPRP----GVSGLSIRDLLDVITYRNPDYLIAGEIRGP 251
Query: 439 EARTMFTAMNTGHDG 453
+ F + +G G
Sbjct: 252 DIDAFFNYLASGRKG 266
>emb|CAB60061.1| (Y19029) lvhB11 [Legionella pneumophila]
Length = 334
Score = 132 bits (328), Expect = 2e-29
Identities = 113/344 (32%), Positives = 168/344 (47%), Gaps = 56/344 (16%)
Query: 220 GKLDPL---VRDDNLEEIMVIGIDRPVYVWHRRFG-MCKTNIVFKTERELLTIIERIARE 275
G L PL + D+++ EI+ I++P V+ R G + + +I T + L + IA E
Sbjct: 14 GLLSPLQDFLEDEHVSEIL---INKPKEVFIERHGQLTRFDIPVLTSQYLRRLFLLIANE 70
Query: 276 VGRRIDQQNPLLDARLPDGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDL--------- 326
+ + + P+L L DGSRV +PP SL TL+IRKF ++ +
Sbjct: 71 NKQTLSESTPVLSGNLADGSRVQLVIPPASLY-ETLSIRKFSLKQVSFDEYKTKGFFSSA 129
Query: 327 ----IKFRTLSSDVAAFLWLLVDGLG---------VKPANILVAGGTGSGKTTTLNSLAM 373
IK + D + L L D V NI+++GGT SGKTT LNS
Sbjct: 130 RGVGIKEHSECLDKSDELLELYDTKNWQEFIRQAIVSKKNIIISGGTSSGKTTFLNSCVG 189
Query: 374 FIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVG 433
IP ER+I++EDT E+ +P + VRL+ E +ITM DLV+ TLR+RPDRII+G
Sbjct: 190 QIPLHERLITLEDTYEMDVPHTNIVRLKALKQVGEQTQKITMQDLVQATLRLRPDRIIMG 249
Query: 434 EVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELFEKYHDKIGKYKDMEY 493
E+RG E +A +TGH GAL + I N K ++ YK +
Sbjct: 250 EIRGRELFDFVSACSTGHSGAL---ATIHANNPKVAFMRMAQ-----------LYKLNQV 295
Query: 494 VELNEEDTFEVISIGPDLSARRHKVTH--VWRRKVKDGEKLVKI 535
++E D ++V+ H+V V +K DG +LV++
Sbjct: 296 AGMDEADIYKVL----------HEVIDVIVQLQKTPDGRRLVEV 329
>pir||C44020 hypothetical protein trbB [imported] - plasmid RK2
>gi|152556|gb|AAA26428.1| (M93696) trbB [Plasmid RP4]
>gi|581214|emb|CAA42597.1| (X59971) KilB protein
[Escherichia coli]
Length = 319
Score = 129 bits (320), Expect = 2e-28
Identities = 82/213 (38%), Positives = 116/213 (53%), Gaps = 16/213 (7%)
Query: 245 VWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPP 303
VWH R G I + IIE +A G+ + + +P+L+ P DGSR LPP
Sbjct: 46 VWHERLGEPMRYICDMRPSQSQAIIETVAGFHGKEVTRHSPILEGEFPLDGSRFAGQLPP 105
Query: 304 ISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSG 363
+ + PT IRK T+ ++ ++ + + ++ NILV GGTGSG
Sbjct: 106 V-VAAPTFAIRKRAVAIFTLEQYVEAGIMTREQ----YEVIKSAVAAHRNILVIGGTGSG 160
Query: 364 KTTTLNSLA---MFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK 420
KTT +N++ + PSERV+ IEDT E+Q E+ V+ T +++M L+K
Sbjct: 161 KTTLVNAIINEMVAFNPSERVVIIEDTGEIQCAAENAVQYHTSI-------DVSMTLLLK 213
Query: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDG 453
TLRMRPDRI+VGEVRGPEA + A NTGH+G
Sbjct: 214 TTLRMRPDRILVGEVRGPEALDLLMAWNTGHEG 246
>gb|AAA26405.1| (L05600) klbA [Plasmid RK2]
Length = 298
Score = 129 bits (320), Expect = 2e-28
Identities = 82/213 (38%), Positives = 116/213 (53%), Gaps = 16/213 (7%)
Query: 245 VWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPP 303
VWH R G I + IIE +A G+ + + +P+L+ P DGSR LPP
Sbjct: 25 VWHERLGEPMRYICDMRPSQSQAIIETVAGFHGKEVTRHSPILEGEFPLDGSRFAGQLPP 84
Query: 304 ISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSG 363
+ + PT IRK T+ ++ ++ + + ++ NILV GGTGSG
Sbjct: 85 V-VAAPTFAIRKRAVAIFTLEQYVEAGIMTREQ----YEVIKSAVAAHRNILVIGGTGSG 139
Query: 364 KTTTLNSLA---MFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK 420
KTT +N++ + PSERV+ IEDT E+Q E+ V+ T +++M L+K
Sbjct: 140 KTTLVNAIINEMVAFNPSERVVIIEDTGEIQCAAENAVQYHTSI-------DVSMTLLLK 192
Query: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDG 453
TLRMRPDRI+VGEVRGPEA + A NTGH+G
Sbjct: 193 TTLRMRPDRILVGEVRGPEALDLLMAWNTGHEG 225
>gi|10955211 TrbB [Enterobacter aerogenes] >gi|7444255|pir||T08499 trbB protein
- Enterobacter aerogenes plasmid R751
>gi|466380|gb|AAA17043.1| (U07618) TrbB [Plasmid R751]
>gi|1572548|gb|AAC64443.1| (U67194) TrbB [Enterobacter
aerogenes]
Length = 320
Score = 123 bits (306), Expect = 7e-27
Identities = 83/213 (38%), Positives = 113/213 (52%), Gaps = 16/213 (7%)
Query: 245 VWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPP 303
+W R G I + IIE IA G+ + + P+L+ LP DGSR LPP
Sbjct: 47 LWLERLGEPMKCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQLPP 106
Query: 304 ISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSG 363
+ + PT IRK T+ ++ +++ L V NILV GGTGSG
Sbjct: 107 V-VPAPTFAIRKKGVAIFTLDQYVERGIMTAPQREALIAAVRA----HRNILVIGGTGSG 161
Query: 364 KTTTLNSLA---MFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVK 420
KTT +N++ + P+ERV IEDT E+Q E++V+ T ++ M L+K
Sbjct: 162 KTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSI-------DVNMTALLK 214
Query: 421 NTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDG 453
TLRMRPDRI+VGEVRGPEA + A NTGH+G
Sbjct: 215 TTLRMRPDRILVGEVRGPEALDLLMAWNTGHEG 247
>sp|Q58683|YC87_METJA HYPOTHETICAL PROTEIN MJ1287 >gi|2128765|pir||F64460 hypothetical
protein MJ1287 - Methanococcus jannaschii
>gi|1591924|gb|AAB99289.1| (U67569) type II secretion
system protein, putative [Methanococcus jannaschii]
Length = 270
Score = 118 bits (293), Expect = 2e-25
Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 4/127 (3%)
Query: 325 DLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISI 384
DLI++ ++S ++ A+LWLL++ +I+VAG +GKTT LN+ ++FIPP +++SI
Sbjct: 4 DLIRYGSISPEMLAYLWLLIEYKN----SIMVAGEVATGKTTLLNAFSLFIPPQMKIVSI 59
Query: 385 EDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMF 444
EDT E++L E+W+ TR + EITM DL+K LR RPD +IVGEVRG EA+ +F
Sbjct: 60 EDTPEIRLYHENWIAGTTRSGFGGEEYEITMMDLLKAALRQRPDYLIVGEVRGEEAKILF 119
Query: 445 TAMNTGH 451
A+ TGH
Sbjct: 120 QAITTGH 126
>dbj|BAA97435.1| (AB045234) component of type IV secretion system [Wolbachia sp.
wTai]
Length = 330
Score = 115 bits (285), Expect = 2e-24
Identities = 83/255 (32%), Positives = 128/255 (49%), Gaps = 23/255 (9%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRFG--MCKTNIVFKTERELLTIIERIAREVGRR 279
L+PL E + I I++P VW G C+ +F L ++ IA+ ++
Sbjct: 10 LEPLQGIFQEEGVNEISINKPKEVWIENRGEIRCEKLEIFDLNH-LKSLSRLIAQATEQK 68
Query: 280 IDQQNPLLDARLPDGSRVNATLPPI-SLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAA 338
+ ++ PLL A LP+G R+ PP D ++IRK L + D K S V
Sbjct: 69 LSEETPLLSATLPNGYRIQIVFPPACEPDKVVISIRKPSSMQLALDDYEKMGAFSETVIG 128
Query: 339 F--------LWLLVDGLGVKP---------ANILVAGGTGSGKTTTLNSLAMFIPPSERV 381
L LL+ +K NI+++GGT +GKTT N+ IP ER+
Sbjct: 129 VTDNPVDRHLDLLLKQKKIKEFLEYAVINKKNIIISGGTSTGKTTFTNATLRAIPSEERI 188
Query: 382 ISIEDTAELQLPIEHWVRLET-RPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEA 440
I++ED E+ L +H ++ +G+ ++T DL++ LR+RPDRIIVGE+RG EA
Sbjct: 189 ITVEDAREIVLN-DHPNKVHLIASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEA 247
Query: 441 RTMFTAMNTGHDGAL 455
+ A+NTGH G++
Sbjct: 248 FSFLRAINTGHPGSI 262
>gi|10956306 pXO1-59 [Bacillus anthracis] >gi|7474299|pir||C59098 hypothetical
protein pXO1-59 - Bacillus anthracis virulence plasmid
pXO1 >gi|4894275|gb|AAD32363.1|AAD32363 (AF065404)
pXO1-59 [Bacillus anthracis]
Length = 477
Score = 114 bits (283), Expect = 4e-24
Identities = 102/341 (29%), Positives = 159/341 (45%), Gaps = 25/341 (7%)
Query: 173 ESIPNLEERRKVFLREVRKMVKEMAPTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLE 232
ES N E+R V + ++ + +S+ E L ++ +++G+G ++PL D ++
Sbjct: 63 ESFMNKEKRAAVE-QIIKSFLLSNQVVISDVPSEQLLNMVCDDIVGFGIIEPLKEDKDVT 121
Query: 233 EIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLP 292
+I + G +Y G C F+TE E+ + ++ ++ +D P
Sbjct: 122 DIYINGTKEIIYEKIGE-GECTFPYRFETEEEVKALAYKMVNSTSESLNTAKSYVDCVFP 180
Query: 293 DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPA 352
R+N L + G T+TIRK D L + R LS++ A+ + L VK
Sbjct: 181 Y-IRINIALDELGGLGTTITIRK-NADHLRASEE---RMLSTNQASKVMLDFLAAAVKSK 235
Query: 353 -NILVAGGTGSGKTTTLNSLAMFIPPS---ERVISIEDTAELQL----PIEHWVRLETRP 404
NILVAG TG+GK+ + LA IP ER + +ED EL L P H+V ++ R
Sbjct: 236 MNILVAGATGTGKSEFMKYLASHIPKGKKKERTLVVEDNPELYLHRIFPEHHFVPMQCRA 295
Query: 405 PNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLP 464
VE + I D L+ N LR P R+IVGE RG EA M TGH G F+ +
Sbjct: 296 SEVE-ENAIDFDRLLTNALRQGPKRLIVGESRGKEALKMINFFQTGHPG----FTSVHAR 350
Query: 465 NGKEFIGKLVDELFEKYHDKIGKYKDMEYVELNEEDTFEVI 505
+ KE + +L+ + G D +Y+ TF+VI
Sbjct: 351 SAKEAVRRLMLMCLQS-----GANIDAQYLYELISQTFDVI 386
>gi|10954837 Probable trbB gene [Agrobacterium tumefaciens]
>gi|2982705|dbj|BAA25274.1| (AB006858) trbB
[Agrobacterium tumefaciens] >gi|3766175|gb|AAC82628.1|
(AF057718) TrbB [Agrobacterium tumefaciens]
>gi|6498190|dbj|BAA87642.1| (AB016260) Probable trbB
gene [Agrobacterium tumefaciens]
Length = 323
Score = 114 bits (282), Expect = 5e-24
Identities = 77/232 (33%), Positives = 121/232 (51%), Gaps = 19/232 (8%)
Query: 228 DDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLL 287
D + EIM + D +++ G+ ++ E+ II +A + D + P++
Sbjct: 28 DATVVEIM-LNPDGKLFIERLGHGVAPAGLLSPAAAEV--IIGSVAHALQSEADDEQPII 84
Query: 288 DARLP-DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDG 346
LP G R LPP+ + GP+ TIR+ + + D +K + +++ + L +
Sbjct: 85 SGELPIGGHRFEGLLPPV-VSGPSFTIRRRASRLIPLDDYVKHKIMTAAQVSVLRSAI-- 141
Query: 347 LGVKPANILVAGGTGSGKTTTLNSLAMFI---PPSERVISIEDTAELQLPIEHWVRLETR 403
NI+++GGTGSGKTT N++ I P +R++ +EDTAE+Q E+ V L T
Sbjct: 142 --ASRMNIVISGGTGSGKTTLANAVIAEIVANAPDDRIVILEDTAEIQCAAENAVALHT- 198
Query: 404 PPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
I M L+K+T+R+RPDRIIVGEVR A T+ A NTGH G +
Sbjct: 199 ------SDTIDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGV 244
>dbj|BAA97442.1| (AB045235) component of type IV secretion system [Wolbachia sp.
wKueYO]
Length = 330
Score = 113 bits (281), Expect = 6e-24
Identities = 84/255 (32%), Positives = 128/255 (49%), Gaps = 23/255 (9%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRFG--MCKTNIVFKTERELLTIIERIAREVGRR 279
L+PL E + I I++P VW G C+ VF L ++ IA+ ++
Sbjct: 10 LEPLQGIFQEEGVNEISINKPKEVWIENRGEIRCEKLEVFDLNH-LKSLGRLIAQATEQK 68
Query: 280 IDQQNPLLDARLPDGSRVNATLPPI-SLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAA 338
+ ++ PLL A LP+G R+ PP D ++IRK L + D K S V
Sbjct: 69 LSEEAPLLSATLPNGYRIQIVFPPACEPDKVVMSIRKPSSMQLALDDYEKMGAFSETVTE 128
Query: 339 --------FLWLLVDGLGVKP---------ANILVAGGTGSGKTTTLNSLAMFIPPSERV 381
L LL+ +K NI+++GGT +GKTT N+ IP ER+
Sbjct: 129 ATDNPVDRHLDLLLRQKKIKEFLEYAVISKKNIIISGGTSTGKTTFTNATLRAIPAEERI 188
Query: 382 ISIEDTAELQLPIEHWVRLET-RPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEA 440
I++ED E+ L +H ++ +G+ ++T DL++ LR+RPDRIIVGE+RG EA
Sbjct: 189 ITVEDAREIVLN-DHPNKVHLIASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRGAEA 247
Query: 441 RTMFTAMNTGHDGAL 455
+ A+NTGH G++
Sbjct: 248 FSFLRAINTGHPGSI 262
>gi|10955104 trbB [Agrobacterium tumefaciens] >gi|1730018|sp|P54907|TRBB_AGRTU
CONJUGAL TRANSFER PROTEIN TRBB
>gi|1163216|gb|AAB95094.1| (AF242881) trbB
[Agrobacterium tumefaciens]
Length = 323
Score = 111 bits (276), Expect = 2e-23
Identities = 69/192 (35%), Positives = 104/192 (53%), Gaps = 16/192 (8%)
Query: 268 IIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDL 326
+I +A + D + P++ LP G R LPPI + GP TIR+ + + D
Sbjct: 65 VIGSVAHALQSEADDERPIISGELPIGGHRFEGLLPPI-VSGPAFTIRRRASRLIPLDDY 123
Query: 327 IKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFI---PPSERVIS 383
+ + ++ A+ + +D NI+++GGTGSGKTT N++ I P +R++
Sbjct: 124 VTSKVMTEAQASAIRSAIDSR----MNIVISGGTGSGKTTLANAIIAEIVTAAPDDRLVI 179
Query: 384 IEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
+EDTAE+Q E+ V L T + M L+K+T+R+RPDRIIVGEVR A T+
Sbjct: 180 LEDTAEIQCAAENAVSLHT-------SDTVDMARLLKSTMRLRPDRIIVGEVRDGAALTL 232
Query: 444 FTAMNTGHDGAL 455
A NTGH G +
Sbjct: 233 LKAWNTGHPGGV 244
>sp|P55395|TRBB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRBB >gi|2182338|gb|AAB92428.1|
(AE000068) TrbB [Rhizobium sp. NGR234]
Length = 325
Score = 109 bits (271), Expect = 9e-23
Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 20/269 (7%)
Query: 228 DDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLL 287
D N+ EIM + D +++ G+ + E+ +I +A + +D + P++
Sbjct: 28 DSNVVEIM-LNPDGKLFIERLGHGVAPAGEMSSAAAEM--VIGTVAHALQSEVDTEQPII 84
Query: 288 DARLP-DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDG 346
LP G R LPP+ + P+ TIR+ + + D ++ ++ AA + +D
Sbjct: 85 SGELPIGGHRFEGLLPPV-VAKPSFTIRRRASRLIPLDDYVRSGVMTEAQAATIRSAIDS 143
Query: 347 LGVKPANILVAGGTGSGKTTTLNSLAMFI---PPSERVISIEDTAELQLPIEHWVRLETR 403
NI+++GGT SGKTT N++ I P +R++ +EDTAE+Q ++ V L T
Sbjct: 144 R----LNIIISGGTASGKTTLANAVIHEIVRSAPEDRLVILEDTAEIQCAADNAVLLRT- 198
Query: 404 PPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQL 463
+ M L+K+T+R+RPDRI+VGEVR A T+ A NTGH G +
Sbjct: 199 ------SDTVDMARLLKSTMRLRPDRIVVGEVRDGAALTLLKAWNTGHPGGVATIHSNTA 252
Query: 464 PNGKEFIGKLVDELFEK-YHDKIGKYKDM 491
+ + +L E ++ H+ IG+ D+
Sbjct: 253 TSALRRLEQLTAEASQQPMHEVIGEVVDL 281
>pir||G64460 hypothetical protein MJ1288 - Methanococcus jannaschii
Length = 252
Score = 108 bits (266), Expect = 3e-22
Identities = 56/162 (34%), Positives = 100/162 (61%), Gaps = 5/162 (3%)
Query: 142 YEISVPELSREEEKLLKLVRD--RAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPT 199
Y + P L++EE KL +R +A++++ ++ LE+ K +++++ ++ T
Sbjct: 82 YIVIEPILTKEEIKLFLKLRKVVQALLDVPVEEIDKEKLEDYLK---EKIKEIFDDLKLT 138
Query: 200 LSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVF 259
L + L +++ +IGYGK+D L++D+NLE+I G+ +PVYV+HR++ KTNI F
Sbjct: 139 LDDVTRHKLIYFLIKYLIGYGKIDALMKDENLEDISCTGVGKPVYVFHRKYEHLKTNIKF 198
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL 301
+T+ EL + +A+ G+ + NP++D LPDGSR+N TL
Sbjct: 199 ETDEELDSFCISLAQRCGKSLTLANPIVDGSLPDGSRLNVTL 240
>sp|Q58684|YC88_METJA HYPOTHETICAL PROTEIN MJ1288 >gi|2826386|gb|AAB99290.1| (U67569)
type II secretion system protein [Methanococcus
jannaschii]
Length = 252
Score = 108 bits (266), Expect = 3e-22
Identities = 56/162 (34%), Positives = 100/162 (61%), Gaps = 5/162 (3%)
Query: 142 YEISVPELSREEEKLLKLVRD--RAIVEIQIDPESIPNLEERRKVFLREVRKMVKEMAPT 199
Y + P L++EE KL +R +A++++ ++ LE+ K +++++ ++ T
Sbjct: 82 YIVIEPILTKEEIKLFLKLRKVVQALLDVPVEEIDKEKLEDYLK---EKIKEIFDDLKLT 138
Query: 200 LSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVF 259
L + L +++ +IGYGK+D L++D+NLE+I G+ +PVYV+HR++ KTNI F
Sbjct: 139 LDDVTRHKLIYFLIKYLIGYGKIDALMKDENLEDISCTGVGKPVYVFHRKYEHLKTNIKF 198
Query: 260 KTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL 301
+T+ EL + +A+ G+ + NP++D LPDGSR+N TL
Sbjct: 199 ETDEELDSFCISLAQRCGKSLTLANPIVDGSLPDGSRLNVTL 240
>pir||G71684 virB11 protein (virB11) RP292 - Rickettsia prowazekii
>gi|3860853|emb|CAA14753.1| (AJ235271) VIRB11 PROTEIN
(virB11) [Rickettsia prowazekii]
Length = 334
Score = 106 bits (261), Expect = 1e-21
Identities = 77/255 (30%), Positives = 125/255 (48%), Gaps = 32/255 (12%)
Query: 225 LVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIER-IAREVGRRIDQQ 283
L ++ + EIMV ++P W + G + + + + + L + R +A+ + I ++
Sbjct: 18 LFAEEGINEIMV---NKPGEAWVEKRGDIYSKQIPELDSDHLLALGRLVAQSTEQMISEE 74
Query: 284 NPLLDARLPDGSRVNATLPPISLDGPTL-TIRKFKKDPLTI------------------- 323
PLL A LP+G R+ PP G + +IRK LT+
Sbjct: 75 KPLLSATLPNGYRIQIVFPPACEIGQIIYSIRKPSGMNLTLDEYAQMGAFDNTATESLVD 134
Query: 324 --IDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERV 381
D++ + F+ V + NI+++GGT +GKTT N+ IP ER+
Sbjct: 135 EDADILNNFLAEKKIKEFIRYAV----ISKKNIIISGGTSTGKTTFTNAALTEIPAIERL 190
Query: 382 ISIEDTAELQLPIEHWVRLET-RPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEA 440
I++ED E+ L H R+ +G+ +T DL++ LR+RPDRIIVGE+RG EA
Sbjct: 191 ITVEDAREVVLS-SHPNRVHLLASKGGQGRANVTTQDLIEACLRLRPDRIIVGELRGKEA 249
Query: 441 RTMFTAMNTGHDGAL 455
+ A+NTGH G++
Sbjct: 250 FSFLRAINTGHPGSI 264
>gb|AAG18825.1| (AE004986) type II secretion system protein; GspE1 [Halobacterium
sp. NRC-1]
Length = 548
Score = 105 bits (259), Expect = 2e-21
Identities = 81/267 (30%), Positives = 133/267 (49%), Gaps = 19/267 (7%)
Query: 198 PTLSEGRVELLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVW-----HRRFGM 252
P + + V L+ +V++++G +L +RD NLE++ + V V H
Sbjct: 287 PPVGDDHVADLAYYVVRDLVGDAELTIPIRDPNLEDVEANRVGERVKVVARDRVHAADDR 346
Query: 253 CKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARL-PDGSRVNAT------LPPIS 305
TN+V E+ + ++ +A + G ++ P L PDG + T LP IS
Sbjct: 347 IPTNLVLDDEQRFVDLVTGLAAQDGVELNAATPAAKVNLEPDGVADDVTIRCAVALPAIS 406
Query: 306 LDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKT 365
GP ++IRK D LT +DL++ +L++ + A LWL + V +L +G TG GKT
Sbjct: 407 EGGPHVSIRKQAADALTPVDLLRQGSLTAGIVALLWLAYEHHRV----VLFSGPTGVGKT 462
Query: 366 TTLNSLAMFIPPSERVISI-EDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLR 424
T +N+ F+P +R +SI E + E++LP E V L TR K ++M DL+ T
Sbjct: 463 TLMNAHMPFVPFDDRPVSIDEGSREVRLPHETGVSLSTREHEQAFK-RVSMADLMTATNY 521
Query: 425 MRPDRIIVGEVRGPEARTMFT-AMNTG 450
+ PD ++ E+ + F +NTG
Sbjct: 522 LNPDIEVIAEINTRASFESFAQILNTG 548
>gi|10954776 probable trbB gene [Agrobacterium rhizogenes]
>gi|10567440|dbj|BAB16249.1| (AP002086) probable trbB
gene [Agrobacterium rhizogenes]
Length = 325
Score = 104 bits (258), Expect = 3e-21
Identities = 72/229 (31%), Positives = 117/229 (50%), Gaps = 17/229 (7%)
Query: 268 IIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPPISLDGPTLTIRKFKKDPLTIIDL 326
+I +A + +D + P++ LP G R LPP+ + P TIR+ + + D
Sbjct: 65 VIGTVAHALQSEVDTEQPIISGELPIGGHRFEGLLPPV-VAKPAFTIRRRASRLIPLEDY 123
Query: 327 IKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFI---PPSERVIS 383
++ ++ A+ + + NI+++GGTGSGKTT N++ I P +R++
Sbjct: 124 VRTGVMTEYQASTIRSAISAR----LNIVISGGTGSGKTTLANAVIDEIVKSAPEDRLVI 179
Query: 384 IEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
+EDTAE+Q E+ V L T I M L+K+T+R+RPDRI+VGEVR A T+
Sbjct: 180 LEDTAEIQCTAENAVLLHT-------SDTIDMARLLKSTMRLRPDRIVVGEVRDGAALTL 232
Query: 444 FTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELFEK-YHDKIGKYKDM 491
A NTGH G + + + +L E ++ H+ IG+ D+
Sbjct: 233 LKAWNTGHPGGVATIHSNTAMSALRRLEQLTAEASQQPMHEVIGEAVDL 281
>pir||E64585 virB11 homolog - Helicobacter pylori (strain 26695)
>gi|2313639|gb|AAD07592.1| (AE000566) virB11 homolog
[Helicobacter pylori 26695]
>gi|8843975|gb|AAF80196.1|AF282852_6 (AF282852) Cag-alfa
[Helicobacter pylori]
Length = 330
Score = 104 bits (256), Expect = 5e-21
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 283 QNPLLDARLPDGSRVNATLPPISLDGPTLTIR----KFKKDPLTIIDLIKFRTLSSDVAA 338
+NP+L + L +G RV L P++++ T++I P + + F L +
Sbjct: 100 ENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQ 159
Query: 339 FLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWV 398
+ + DG+ + N++V GGTGSGKTT + S+ FIP ER+ISIEDT E+
Sbjct: 160 AISAIKDGIAIGK-NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF------ 212
Query: 399 RLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
+ + G IT D +K+ LRMRPDRII+GE+R EA + + +GH G L
Sbjct: 213 KHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTL 269
>pir||G71927 cag island protein, DNA transfer protein - Helicobacter pylori
(strain J99) >gi|4155017|gb|AAD06057.1| (AE001481) cag
island protein, DNA transfer protein [Helicobacter
pylori J99]
Length = 330
Score = 104 bits (256), Expect = 5e-21
Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 283 QNPLLDARLPDGSRVNATLPPISLDGPTLTIR----KFKKDPLTIIDLIKFRTLSSDVAA 338
+NP+L + L +G RV L P++++ T++I P + + F L +
Sbjct: 100 ENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQ 159
Query: 339 FLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWV 398
+ + DG+ + N++V GGTGSGKTT + S+ FIP ER+ISIEDT E+
Sbjct: 160 AISAIKDGIAIGK-NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF------ 212
Query: 399 RLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
+ + G IT D +K+ LRMRPDRII+GE+R EA + + +GH G L
Sbjct: 213 KHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTL 269
>dbj|BAA28705.1| (AB011800) virB11 [Agrobacterium tumefaciens]
Length = 344
Score = 100 bits (247), Expect = 6e-20
Identities = 81/246 (32%), Positives = 123/246 (49%), Gaps = 33/246 (13%)
Query: 237 IGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRR-IDQQNPLLDARLPDGS 295
+ I+RP + R+ G+ T + L I +A + ++ + +NPL LPDG
Sbjct: 26 VAINRPGEAFVRQAGVF-TKFPLSVSYDDLEDIAILAGALRKQDVGPRNPLCATELPDGE 84
Query: 296 RVNATLPPISLDGP-TLTIRK--FKKDPLTII-----------------------DLIKF 329
R+ LPP G +LTIR+ F+ L + ++I
Sbjct: 85 RLQICLPPTVPSGTVSLTIRRPSFRVSGLKEVSSRYDAPRWNQWQTRKMRQDQHDEVILR 144
Query: 330 RTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAE 389
+ D+ AFL V G ++L+ G TGSGKTT +L IPP ER+I+IEDT E
Sbjct: 145 HYDNGDLEAFLHACVVGR----LSMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLE 200
Query: 390 LQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNT 449
L +P E+ VRL N G G +T + L++ +LRMRPDRI++GE+R A + + +
Sbjct: 201 LVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDDAAWAYLSEVVS 259
Query: 450 GHDGAL 455
GH G++
Sbjct: 260 GHPGSI 265
>gb|AAF00949.1|AF182718_10 (AF182718) VirB11 homolog [Bartonella henselae]
Length = 356
Score = 99.1 bits (243), Expect = 2e-19
Identities = 83/269 (30%), Positives = 133/269 (48%), Gaps = 38/269 (14%)
Query: 221 KLDPL---VRDDNLEEIMVIGIDRPVYVWHRRFGMCKT-NIVFKTERELLTIIERIAREV 276
KL+P+ ++D+NL EI+ I+RP V KT + EL+ I + +A
Sbjct: 19 KLEPISTFLKDENLFEIV---INRPYQVMTEGVEGWKTIETPALSFNELMGIAKVVASYS 75
Query: 277 GRRIDQQNPLLDARLPDGSRVNATLPP-ISLDGPTLTIRKFKKDPLTIIDL--------- 326
+ I ++NP+L A LP R+ +PP + + ++TIRK ++ DL
Sbjct: 76 KQNISEKNPILSATLPGNERIQIVIPPAVEKNTISMTIRKPSSRSFSLEDLANKGLFSVC 135
Query: 327 --IKFRTLSSDVAAFLWL------LVDGLGVKP------------ANILVAGGTGSGKTT 366
+ F L++ ++ L LV K NIL+AG TGSGKTT
Sbjct: 136 EQVSFTPLNNYLSHLSELKHIDHDLVRAYAKKDFVFFLNQAVQCQKNILIAGKTGSGKTT 195
Query: 367 TLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMR 426
+L IP ER+I+IEDT EL +P ++V + + +G + +L+++ LRMR
Sbjct: 196 LSKALIAKIPDDERIITIEDTPELVVPQPNYVSM-IYSKDGQGLASVGPKELLESALRMR 254
Query: 427 PDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
PDRI++ E+R A +N+GH G++
Sbjct: 255 PDRILLQELRDGTAFYYIRNVNSGHPGSI 283
>pir||F47301 VirB11 homolog - Bordetella pertussis
Length = 339
Score = 98.3 bits (241), Expect = 3e-19
Identities = 80/243 (32%), Positives = 115/243 (46%), Gaps = 19/243 (7%)
Query: 232 EEIMVIGIDRPVYVWHR-RFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDAR 290
++I I ++RP +W+ R G + T L + AR R I + PLL A
Sbjct: 26 QDIAEICVNRPGQLWYEDRNGWNRQESGALTLDHLHALATATARFCDRDICPERPLLAAS 85
Query: 291 LPDGSRVNATLPPISLDGP-TLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGL-- 347
LP G RV +PP G +LTIRK + + +L++ V D L
Sbjct: 86 LPGGERVQIVVPPACEPGTLSLTIRKPARRIWPLSELLRDTLDLPGVPGASQARPDPLLD 145
Query: 348 -------------GVKPAN-ILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQL- 392
V+ ILVAG TGSGKTT +N+L+ IPP ER+++IED EL+L
Sbjct: 146 PWRRGAWDDFLRLAVQAGKAILVAGQTGSGKTTLMNALSGEIPPRERIVTIEDVRELRLD 205
Query: 393 PIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHD 452
P + V L P ++ +L++ LRM P RI++ E+RG EA A +GH
Sbjct: 206 PATNHVHLLYGTPTEGRTAAVSATELLRAALRMAPTRILLAELRGGEAFDFLQACASGHS 265
Query: 453 GAL 455
G +
Sbjct: 266 GGI 268
>sp|P07169|VIBY_AGRT5 VIRB11 PROTEIN >gi|73237|pir||BXAG58 virB11 protein - Agrobacterium
tumefaciens plasmid pTiC58 >gi|39163|emb|CAA37364.1|
(X53264) ORF11 (virB11) (AA 1 - 344) [Agrobacterium
tumefaciens] >gi|154793|gb|AAA91601.1| (J03320) virB11
gene product [Plasmid Ti] >gi|737138|prf||1921363M
virB11 protein [Agrobacterium tumefaciens]
Length = 344
Score = 97.9 bits (240), Expect = 4e-19
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 31/202 (15%)
Query: 280 IDQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFK------KDPLTIIDLIKFRTL 332
+ +NPL LPDG R+ LPP G +LTIR+ K+ + D ++
Sbjct: 69 VGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQW 128
Query: 333 -------------------SSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAM 373
+ D+ AFL V G +L+ G TGSGKTT +L
Sbjct: 129 KERKKRHAQHDEAILRYYDNGDLEAFLHACVVGR----LTMLLCGPTGSGKTTMSKTLIN 184
Query: 374 FIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVG 433
IPP ER+I+IEDT EL +P E+ VRL N G G +T + L++ +LRMRPDRI++G
Sbjct: 185 AIPPQERLITIEDTLELVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLG 243
Query: 434 EVRGPEARTMFTAMNTGHDGAL 455
E+R A + + +GH G++
Sbjct: 244 EIRDDAAWAYLSEVVSGHPGSI 265
>gi|10954971 Probable virB11 gene [Agrobacterium tumefaciens]
>gi|6498324|dbj|BAA87776.1| (AB016260) Probable virB11
gene [Agrobacterium tumefaciens]
Length = 344
Score = 97.9 bits (240), Expect = 4e-19
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 31/202 (15%)
Query: 280 IDQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFK------KDPLTIIDLIKFRTL 332
+ +NPL LPDG R+ LPP G +LTIR+ K+ + D ++
Sbjct: 69 VGPRNPLCATELPDGERLQICLPPTVPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQW 128
Query: 333 -------------------SSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAM 373
+ D+ AFL V G +L+ G TGSGKTT +L
Sbjct: 129 KGRKKRHDQHDEAILRYYDNGDLEAFLHACVVGR----LTMLLCGPTGSGKTTMSKTLIN 184
Query: 374 FIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVG 433
IPP ER+I+IEDT EL +P E+ VRL N G G +T + L++ +LRMRPDRI++G
Sbjct: 185 AIPPQERLITIEDTLELVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLG 243
Query: 434 EVRGPEARTMFTAMNTGHDGAL 455
E+R A + + +GH G++
Sbjct: 244 EIRDDAAWAYLSEVVSGHPGSI 265
>gb|AAD55070.1|AF176227_4 (AF176227) VirB11 [Rhizobium etli]
Length = 369
Score = 95.6 bits (234), Expect = 2e-18
Identities = 72/204 (35%), Positives = 100/204 (48%), Gaps = 35/204 (17%)
Query: 280 IDQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIR------------------------ 314
+ +NPL LP G R+ LPP L G +LTIR
Sbjct: 94 VGPRNPLCATELPGGERLQICLPPAVLAGTVSLTIRRPASHVSGLNGVTDRYDVSRWNQW 153
Query: 315 ---KFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSL 371
K ++D L + S D+ AFL V G +L+ G TGSGKTT +L
Sbjct: 154 ERRKRRRDQQDETILRHYD--SGDLEAFLHACVVGR----LTMLLCGPTGSGKTTMSKTL 207
Query: 372 AMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRII 431
IPP ER+I+IEDT EL +P E+ VRL N G +T + L++ +LRMRPDRI+
Sbjct: 208 ISAIPPQERLITIEDTLELVIPHENHVRL-LYAKNAGGPDAVTAEHLLQASLRMRPDRIL 266
Query: 432 VGEVRGPEARTMFTAMNTGHDGAL 455
+GE+R A + + +GH G++
Sbjct: 267 LGEMRDDAAWAYLSEVVSGHPGSI 290
>gi|10955505 28 pct identical(12 gaps) to pir:C44020[TrbB of plasmid RK2]~31 pct
identical(3 gaps) to pir:I79275[TraG of plasmid
pKM101]~33 pct identical(5 gaps) to prf:1911472G[PtlH of
Bordetella pertussis]~36 pct identical(11 gaps) to
pir:G71684[VirB11 of plasmid>
>gi|9971699|dbj|BAB12650.1| (AP002527) 28 pct
identical(12 gaps) to pir:C44020[TrbB of plasmid RK2]~31
pct identical(3 gaps) to pir:I79275[TraG of plasmid
pKM101]~33 pct identical(5 gaps) to prf:1911472G[PtlH of
Bordetella pertussis]~36 pct identical(11 gaps) to
pir:G71684[VirB11>
Length = 351
Score = 95.2 bits (233), Expect = 3e-18
Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 230 NLEEIMVIGIDRPVYVWHR-RFGMCKTNIVFKTERELLTIIERIAR--EVGRRIDQQNPL 286
N+E + I +++P +W + G + T L+T+ + + ++ + NP+
Sbjct: 34 NIEHVTEISVNKPGTIWFEGKNGWESKDAPDATFDNLMTLAKTLTNLSKIKIPLSHDNPI 93
Query: 287 LDARLPDGSRVNATLPPISLDGPT-LTIRKFKKDPLTIIDLI------------KFRTLS 333
LP G R +PP + + ++IRK TI D + K +
Sbjct: 94 ASVVLPGGERGQIIIPPATENNSVVISIRKPSLTRFTIDDYVRTGRFDNVRIATKHEAIL 153
Query: 334 SDVAAFLWLLV---DGLG--------VKPA-NILVAGGTGSGKTTTLNSLAMFIPPSERV 381
++ +L+ L DG VK N L+ GGTGSGKTT ++A PP R
Sbjct: 154 TERQRYLYELSRRPDGQSKAQFLREAVKDRLNFLIVGGTGSGKTTIAKAIADIFPPERRY 213
Query: 382 ISIEDTAELQLPIE-HWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEA 440
I++ED E+ LP+ + +RL + VE K ++++ +R++PD I + E+RG EA
Sbjct: 214 ITVEDVPEMSLPLHPNHIRLFYKKNTVEAK------EIIEACMRLKPDHIFLAELRGNEA 267
Query: 441 RTMFTAMNTGHDGAL 455
+ A+NTGH+G++
Sbjct: 268 WSYLEALNTGHEGSI 282
>gi|10955153 virB11 [Agrobacterium tumefaciens] >gi|138453|sp|P05360|VIBY_AGRT9
VIRB11 PROTEIN >gi|73235|pir||BXAG55 virB11 protein -
Agrobacterium tumefaciens plasmid pTi15955 and pTiA6
>gi|757733|emb|CAA29982.1| (X06826) VirB11 protein
[Agrobacterium tumefaciens] >gi|8572725|gb|AAF77171.1|
(AF242881) virB11 [Agrobacterium tumefaciens]
Length = 343
Score = 94.0 bits (230), Expect = 6e-18
Identities = 78/246 (31%), Positives = 121/246 (48%), Gaps = 33/246 (13%)
Query: 237 IGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRR-IDQQNPLLDARLPDGS 295
I I+RP + R+ G+ T + + L I +A + ++ + +NPL LP G
Sbjct: 26 IAINRPGEAFVRQAGIF-TKMPLPVSYDDLEDIAILAGALRKQDVGPRNPLCATELPGGE 84
Query: 296 RVNATLPPISLDGP-TLTIRKFK------KDPLTIIDLIKFRTLSS-------------- 334
R+ LPP G +LTIR+ K+ + D ++ +
Sbjct: 85 RLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQWQTRRKRQNQDDEAILQ 144
Query: 335 -----DVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAE 389
D+ AFL V V +L+ G TGSGKTT +L IPP ER+I+IEDT E
Sbjct: 145 HFDNGDLEAFLHACV----VSRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLE 200
Query: 390 LQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNT 449
L +P ++ VRL N G G ++ + L++ +LRMRPDRI++GE+R A + + +
Sbjct: 201 LVIPHDNHVRL-LYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRDDAAWAYLSEVVS 259
Query: 450 GHDGAL 455
GH G++
Sbjct: 260 GHPGSI 265
>gb|AAA88655.1| (J03216) unknown protein [Plasmid Ti]
Length = 343
Score = 94.0 bits (230), Expect = 6e-18
Identities = 78/246 (31%), Positives = 121/246 (48%), Gaps = 33/246 (13%)
Query: 237 IGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRR-IDQQNPLLDARLPDGS 295
I I+RP + R+ G+ T + + L I +A + ++ + +NPL LP G
Sbjct: 26 IAINRPGEAFVRQAGIF-TKMPLPVSYDDLEDIAILAGALRKQDVGPRNPLCATELPGGE 84
Query: 296 RVNATLPPISLDGP-TLTIRKFK------KDPLTIIDLIKFRTLSS-------------- 334
R+ LPP G +LTIR+ K+ + D ++ +
Sbjct: 85 RLQICLPPTVPSGTVSLTIRRPSSRVSGLKEVSSRYDASRWNQWQTRRKRQNQDDEAILQ 144
Query: 335 -----DVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAE 389
D+ AFL V V +L+ G TGSGKTT +L IPP ER+I+IEDT E
Sbjct: 145 HFDNGDLEAFLHACV----VSRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLE 200
Query: 390 LQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNT 449
L +P ++ VRL N G G ++ + L++ +LRMRPDRI++GE+R A + + +
Sbjct: 201 LVIPHDNHVRL-LYSKNGAGLGAVSAEHLLQASLRMRPDRILLGEMRDDAAWAYLSEVVS 259
Query: 450 GHDGAL 455
GH G++
Sbjct: 260 GHPGSI 265
>gi|10954435 ATPase [Actinobacillus actinomycetemcomitans]
>gi|10880912|gb|AAG24426.1|AF302424_26 (AF302424) ATPase
[Actinobacillus actinomycetemcomitans]
Length = 343
Score = 92.1 bits (225), Expect = 2e-17
Identities = 81/252 (32%), Positives = 120/252 (47%), Gaps = 36/252 (14%)
Query: 232 EEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELLTIIER-IAREVGRRIDQQNPLLDAR 290
E I I I+RP ++ + G+ +L R +A+ G I P+L A
Sbjct: 26 EAITEIAINRPGEIFFEKKGVWHYQDAPHITYDLCDSFXRALAKYRGDYISDTKPILSAV 85
Query: 291 LPDGSRVNATLPPIS-LDGPTLTIRKFKKDPLTIIDLIKF-------------------- 329
LP+G R LPP S + ++T+RK K + DL +
Sbjct: 86 LPNGERTQIILPPASERETISITVRKPNK---SFFDLDYYINNGFFSRVIKTENRLSDDD 142
Query: 330 RTL-----SSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISI 384
RTL D A FL V + NI++AG TGSGKTT + +L +IP ER+ +I
Sbjct: 143 RTLLEIYHKGDYAEFLKQAV----ICGKNIVIAGETGSGKTTLMKALVDYIPLHERLGTI 198
Query: 385 EDTAELQLPIEHWVRLETRPPNVEGKGE-ITMDDLVKNTLRMRPDRIIVGEVRGPEARTM 443
EDT EL L +H P+ G+ IT L+K+ LRM+PDRI++ E+RG E
Sbjct: 199 EDTPELFLR-QHKNYFHLFYPSEAKNGDLITAASLLKSCLRMKPDRILLAELRGGETYDF 257
Query: 444 FTAMNTGHDGAL 455
+++GH+G++
Sbjct: 258 INVVSSGHNGSI 269
>gb|AAD15210.1| (M36786) virulence protein [Plasmid pTiC58]
>gi|809650|emb|CAA68594.1| (Y00535) virB [Agrobacterium
tumefaciens]
Length = 251
Score = 90.1 bits (220), Expect = 9e-17
Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 333 SSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQL 392
+ D+ AFL V G +L+ G TGSGKTT +L IPP ER+I+IEDT EL +
Sbjct: 55 NGDLEAFLHACVVGR----LTMLLCGPTGSGKTTMSKTLINAIPPQERLITIEDTLELVI 110
Query: 393 PIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHD 452
P E+ VRL N G G +T + L++ +LRMRPDRI++GE+R A + + +GH
Sbjct: 111 PHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDDAAWAYLSEVVSGHP 169
Query: 453 GAL 455
G++
Sbjct: 170 GSI 172
>gi|10954809 probable virB11 gene [Agrobacterium rhizogenes]
>gi|10567473|dbj|BAB16282.1| (AP002086) probable virB11
gene [Agrobacterium rhizogenes]
Length = 344
Score = 88.9 bits (217), Expect = 2e-16
Identities = 68/204 (33%), Positives = 100/204 (48%), Gaps = 35/204 (17%)
Query: 280 IDQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRK----------------------- 315
+ +NPL LP G R+ LPP G +LTIR+
Sbjct: 69 VGPRNPLCATELPGGERMQICLPPTVPSGTVSLTIRRPSNRVSELGEVSARYDVRRWNQW 128
Query: 316 ----FKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSL 371
++D L L + + D+ +FL V G +L+ G TGSGKTT +L
Sbjct: 129 QIRTQRRDQLDEAILRDYD--NGDLESFLRACVIG----KRTMLLCGPTGSGKTTMSKTL 182
Query: 372 AMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGEITMDDLVKNTLRMRPDRII 431
IP ER+I+IEDT EL +P E+ VRL + G G +T + L++ +LRMRPDRI+
Sbjct: 183 ISAIPREERLITIEDTLELVIPHENHVRL-LYSKSGAGLGAVTAEQLLQASLRMRPDRIL 241
Query: 432 VGEVRGPEARTMFTAMNTGHDGAL 455
+GE+R A + + +GH G++
Sbjct: 242 LGEMRDDAAWAYLSEVVSGHPGSI 265
>gb|AAD56621.1|AF141604_11 (AF141604) VirB11 [Brucella suis]
Length = 397
Score = 86.2 bits (210), Expect = 1e-15
Identities = 81/260 (31%), Positives = 121/260 (46%), Gaps = 33/260 (12%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERE-LLTIIERIAREVGRRI 280
L P + D + E+ V +RP V+ R + V + E L+++ AR V + I
Sbjct: 29 LRPWLDDPQITEVCV---NRPGEVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQDI 85
Query: 281 DQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFKKDPLTIIDLIK------FRTLS 333
P+L A LP G R+ PP G ++TIRK T+ D + R +S
Sbjct: 86 SDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFPRRTLEDYAQQGFFKHVRPMS 145
Query: 334 SDVAAFLWLLVDGLGVKPAN---------------ILVAGGTGSGKTTTLNSLAMFIPPS 378
+ F L L +K A I+VAG TGSGKTT + +L IP
Sbjct: 146 KSLTPFEQEL---LALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
Query: 379 ERVISIEDTAELQLPIEHWVRLETRPPN---VEGKGEITMDDLVKNTLRMRPDRIIVGEV 435
+R+I+IED EL LP +H + P+ E +T L+++ LRM+P RI++ E+
Sbjct: 203 QRLIAIEDVPELFLP-DHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAEL 261
Query: 436 RGPEARTMFTAMNTGHDGAL 455
RG EA +GH G++
Sbjct: 262 RGGEAYDFINVAASGHGGSI 281
>emb|CAA57033.1| (X81123) unnamed protein product [Escherichia coli]
Length = 337
Score = 84.7 bits (206), Expect = 4e-15
Identities = 89/327 (27%), Positives = 132/327 (40%), Gaps = 60/327 (18%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRF-GMCKTNIVFKTERELLTIIERIAREVGRRI 280
L PL R + E+ + I RP VW + F G + TE L +I I G
Sbjct: 5 LRPLDRFLDAPEVTELSICRPGEVWTKTFEGWQVHEVPELTEPFLQALITAIIVYNGVAP 64
Query: 281 DQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFKKDPLTIIDL-----------IK 328
N ++ LP G R P +DG + IRK T+ +L +
Sbjct: 65 KSVNYVV---LPGGQRGTIAQAPAVIDGTLSFLIRKHSLVVKTLEELDAEGAFDTFTDVS 121
Query: 329 FRTLSSDVAAFLWLLVDGLGVKP-------------------------ANILVAGGTGSG 363
F S++ A + D ++P NI++AG TGSG
Sbjct: 122 FNKPSAEEANHYLTVQDFTRLEPFEVELLKLKRDGTIREFLEKCVLYKRNIIIAGKTGSG 181
Query: 364 KTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVE-----GKGEITMDDL 418
KTT SL +PP ER+I+IED EL LP P V G G ++ D+
Sbjct: 182 KTTFARSLIEKVPPEERIITIEDVHELFLP--------NHPNRVHMLYGYGAGRVSADEC 233
Query: 419 VKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELF 478
+ +R PDRI + E+RG EA ++NTGH G++ E L+ +
Sbjct: 234 LAACMRQSPDRIFLAELRGNEAWEYLNSLNTGHPGSITTTHANNALQTFERCATLIKK-- 291
Query: 479 EKYHDKIGKYKDMEYVELNEEDTFEVI 505
+G+ +ME ++L T +V+
Sbjct: 292 ----SDVGRQLEMEMIKLVLYTTIDVV 314
>gb|AAF73904.1|AF226278_11 (AF226278) VirB11 [Brucella abortus]
Length = 362
Score = 84.7 bits (206), Expect = 4e-15
Identities = 80/260 (30%), Positives = 120/260 (45%), Gaps = 33/260 (12%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERE-LLTIIERIAREVGRRI 280
L P + D + E+ V +RP V+ R + V + E L+++ AR V + I
Sbjct: 29 LRPWLDDPQITEVCV---NRPGEVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQDI 85
Query: 281 DQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFKKDPLTIIDLIK------FRTLS 333
P+L A LP G R+ PP G ++TIRK T+ D + R +S
Sbjct: 86 SDSRPVLSAILPMGERIQIVRPPACEHGTISVTIRKPSFTRRTLEDYAQQGFFKHVRPMS 145
Query: 334 SDVAAFLWLLVDGLGVKPAN---------------ILVAGGTGSGKTTTLNSLAMFIPPS 378
+ F L L +K A I+VAG TGSGKTT + +L IP
Sbjct: 146 KSLTPFEQEL---LALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202
Query: 379 ERVISIEDTAELQLPIEHWVRLETRPPN---VEGKGEITMDDLVKNTLRMRPDRIIVGEV 435
+R+I+IED EL LP +H + P+ E +T L+++ LRM+P RI++ E+
Sbjct: 203 QRLITIEDVPELFLP-DHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAEL 261
Query: 436 RGPEARTMFTAMNTGHDGAL 455
RG E +GH G++
Sbjct: 262 RGGETYDFINVAASGHGGSI 281
>emb|CAA57032.1| (X81123) unnamed protein product [Escherichia coli]
Length = 358
Score = 84.7 bits (206), Expect = 4e-15
Identities = 89/327 (27%), Positives = 132/327 (40%), Gaps = 60/327 (18%)
Query: 222 LDPLVRDDNLEEIMVIGIDRPVYVWHRRF-GMCKTNIVFKTERELLTIIERIAREVGRRI 280
L PL R + E+ + I RP VW + F G + TE L +I I G
Sbjct: 26 LRPLDRFLDAPEVTELSICRPGEVWTKTFEGWQVHEVPELTEPFLQALITAIIVYNGVAP 85
Query: 281 DQQNPLLDARLPDGSRVNATLPPISLDGP-TLTIRKFKKDPLTIIDL-----------IK 328
N ++ LP G R P +DG + IRK T+ +L +
Sbjct: 86 KSVNYVV---LPGGQRGTIAQAPAVIDGTLSFLIRKHSLVVKTLEELDAEGAFDTFTDVS 142
Query: 329 FRTLSSDVAAFLWLLVDGLGVKP-------------------------ANILVAGGTGSG 363
F S++ A + D ++P NI++AG TGSG
Sbjct: 143 FNKPSAEEANHYLTVQDFTRLEPFEVELLKLKRDGTIREFLEKCVLYKRNIIIAGKTGSG 202
Query: 364 KTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVE-----GKGEITMDDL 418
KTT SL +PP ER+I+IED EL LP P V G G ++ D+
Sbjct: 203 KTTFARSLIEKVPPEERIITIEDVHELFLP--------NHPNRVHMLYGYGAGRVSADEC 254
Query: 419 VKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGALYYFSEIQLPNGKEFIGKLVDELF 478
+ +R PDRI + E+RG EA ++NTGH G++ E L+ +
Sbjct: 255 LAACMRQSPDRIFLAELRGNEAWEYLNSLNTGHPGSITTTHANNALQTFERCATLIKK-- 312
Query: 479 EKYHDKIGKYKDMEYVELNEEDTFEVI 505
+G+ +ME ++L T +V+
Sbjct: 313 ----SDVGRQLEMEMIKLVLYTTIDVV 335
>pir||E64697 conjugative transfer regulon protein - Helicobacter pylori (strain
26695) >gi|2314595|gb|AAD08463.1| (AE000642) conjugative
transfer regulon protein (trbB) [Helicobacter pylori
26695]
Length = 304
Score = 80.8 bits (196), Expect = 6e-14
Identities = 68/197 (34%), Positives = 101/197 (50%), Gaps = 20/197 (10%)
Query: 265 LLTIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPPISLDGP-TLTIRKFKKDPLT 322
LL E++A G D+++P L+ +P RV+A I+ + TL IR + PL+
Sbjct: 58 LLRFCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLS 117
Query: 323 IIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVI 382
+ D F +SD + + L +K NIL++G T SGKT+ LN+L + ERV+
Sbjct: 118 LED---FTFKASDPKS-----LKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVV 169
Query: 383 SIEDTAELQL-PIEHWVRLETRPPNVEGKGEIT---MDDLVKNTLRMRPDRIIVGEVRGP 438
S+ED+ EL L + V L + GK E T +D + +R+ PDR+IVGE+
Sbjct: 170 SVEDSQELDLKAFSNCVGL------LVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTR 223
Query: 439 EARTMFTAMNTGHDGAL 455
A NTGH G L
Sbjct: 224 NAALFLRLGNTGHKGML 240
>gb|AAB93500.1| (U75584) export type III nucleotide binding protein [Helicobacter
pylori]
Length = 304
Score = 80.4 bits (195), Expect = 7e-14
Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 20/197 (10%)
Query: 265 LLTIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPPISLDGP-TLTIRKFKKDPLT 322
LL E++A G D+++P L+ +P RV+A I+ + TL IR + PL+
Sbjct: 58 LLRFCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLS 117
Query: 323 IIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVI 382
+ D F +SD + L +K NIL++G T SGKT+ LN+L + ERV+
Sbjct: 118 LED---FTFKASDPKG-----LKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVV 169
Query: 383 SIEDTAELQL-PIEHWVRLETRPPNVEGKGEIT---MDDLVKNTLRMRPDRIIVGEVRGP 438
S+ED+ EL L + V L + GK E T +D + +R+ PDR+IVGE+
Sbjct: 170 SVEDSQELDLKAFNNCVGL------LVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTR 223
Query: 439 EARTMFTAMNTGHDGAL 455
A NTGH G L
Sbjct: 224 NAALFLRLGNTGHKGML 240
>pir||E71823 DNA transfer protein - Helicobacter pylori (strain J99)
>gi|4155921|gb|AAD06889.1| (AE001554) DNA transfer
protein [Helicobacter pylori J99]
Length = 304
Score = 80.4 bits (195), Expect = 7e-14
Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 24/255 (9%)
Query: 207 LLSELIVQNMIGYGKLDPLVRDDNLEEIMVIGIDRPVYVWHRRFGMCKTNIVFKTERELL 266
L + ++Q +IG+ P + E ++I ++ ++++ K V + LL
Sbjct: 4 LQTHRVLQALIGH--FTPFLESGITE--LIINTEQELWLYKINNTREKRGHVLFDKAFLL 59
Query: 267 TIIERIAREVGRRIDQQNPLLDARLP-DGSRVNATLPPISLDGP-TLTIRKFKKDPLTII 324
E++A G D+++P L+ +P RV+A I+ + TL IR + PL++
Sbjct: 60 RFCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNNQITLNIRVPRLKPLSLE 119
Query: 325 DLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTGSGKTTTLNSLAMFIPPSERVISI 384
D F+ + + + L +K NIL++G T SGKT+ LN+L + ERV+S+
Sbjct: 120 DFT-FKVSNPES-------LKNLALKGHNILISGETSSGKTSLLNALLDCVNKDERVVSV 171
Query: 385 EDTAELQL-PIEHWVRLETRPPNVEGKGEIT---MDDLVKNTLRMRPDRIIVGEVRGPEA 440
ED+ EL L + V L + GK E T +D + +R+ PDR+IVGE+ A
Sbjct: 172 EDSQELDLKAFSNCVGL------LVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNA 225
Query: 441 RTMFTAMNTGHDGAL 455
NTGH G L
Sbjct: 226 ALFLRLGNTGHKGML 240
>pir||E71104 probable cell division control protein - Pyrococcus horikoshii
>gi|3257012|dbj|BAA29695.1| (AP000003) 1108aa long
hypothetical cell division control protein [Pyrococcus
horikoshii]
Length = 1108
Score = 77.6 bits (188), Expect = 5e-13
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 34/196 (17%)
Query: 457 YFSEIQLPNG-KEFIGKLVDELFEKYHD--KIGKYKDMEYVELNEEDTFEVISIGPDLSA 513
Y +E+ L +G K IG++V+E +K K+G+ D Y +N E + + L
Sbjct: 338 YDTEVLLGDGRKRKIGEIVEEAIKKAEKEGKLGRVDDGFYAPINLE--LYALDVRT-LKV 394
Query: 514 RRHKVTHVWRRKVKDGEKLVKIRTASGKELVLTQDHPVFVLLGRDVARRDAGNVKVGDEI 573
R+ K W+R EK+++IRT G+E+ +T HP F L + + A +KVG++I
Sbjct: 395 RKVKADIAWKRTTP--EKMLRIRTKRGREIRVTPTHPFFTLEEGRIKTKKAYELKVGEKI 452
Query: 574 AVLNTRPDFSVLSPPAMPELLSEPFNYELSSIGDVAWDEVVEVDEIDAKGLGVEYLYDLT 633
A E + ++ WDEVVE++E ++YDL
Sbjct: 453 ATPR-----------------------EEAPEAEIFWDEVVEIEEYKPNN---SWVYDLQ 486
Query: 634 VDINHNYVANGIVVSN 649
V +HN++ANGI V N
Sbjct: 487 VPEHHNFIANGIFVHN 502
>gb|AAF97748.1|AF226280_4 (AF226280) VirB11 [Campylobacter jejuni]
Length = 317
Score = 76.9 bits (186), Expect = 8e-13
Identities = 43/103 (41%), Positives = 61/103 (58%), Gaps = 3/103 (2%)
Query: 353 NILVAGGTGSGKTTTLNSLAMFIPPSERVISIEDTAELQLPIEHWVRLETRPPNVEGKGE 412
N+LV+GGTGSGKT+ LNSL I P+ER+++IED EL + E+ +L P E +
Sbjct: 145 NVLVSGGTGSGKTSFLNSLMGEIDPNERIVTIEDAQELYIENENKTQLAV--PKEESE-I 201
Query: 413 ITMDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGHDGAL 455
+ + N +R+RPDR+ +GE+ T NTGH G L
Sbjct: 202 YSYQTAINNAMRLRPDRLFLGEIDIRNTFTFLRVNNTGHAGNL 244
>gi|10956415 pXO2-25 [Bacillus anthracis] >gi|6470176|gb|AAF13630.1|AF188935_28
(AF188935) pXO2-25 [Bacillus anthracis]
Length = 443
Score = 73.7 bits (178), Expect = 7e-12
Identities = 68/277 (24%), Positives = 128/277 (45%), Gaps = 29/277 (10%)
Query: 187 REVRKMVKEMAPT----LSEGRVELLSELIVQNMIGYGKLDPLVRD-DNLEEIMVIGIDR 241
+E+++++K P + E +V+ + E +V ++G G ++ L++D ++ +I G
Sbjct: 50 QEIKRIIKRDYPVHFMDIDEDKVDDVIEYVVSELVGTGVIERLIKDRPDITDISYNGSHL 109
Query: 242 PVYVWHRRFGMCKTNIVFKTERELLTIIERIAREVGRRIDQQNPLLDARLPDGSRVNATL 301
V + + K N TE+ + +I++ A VG+ +NP+ D + R+NA
Sbjct: 110 IVESSDYK-EIYKDNEHQITEQYITRLIQKFAHAVGKEFTPKNPIFDG-VYGSIRINAVH 167
Query: 302 PPISLDGPTLTIRKFKKDPLTIIDLIKFRTLSSDVAAFLWLLVDGLGVKPANILVAGGTG 361
+ T+++R + P +++ F T + F++ + NIL++G TG
Sbjct: 168 SQNTNGNSTMSLRIVR--PNLVLNEKNFETFAPQ---FIYDFFKVVMESRNNILISGETG 222
Query: 362 SGKTTTLNSLAMFIPPSERVISIEDTAELQL-------PIEHWVRLETRPPNVEGKGEIT 414
+GKT L L F+ + I IED E + + W + G G +T
Sbjct: 223 TGKTEVLKLLFSFVRFDHKAIMIEDVPETHVKSLFPDKDVFSW---------LTGNG-VT 272
Query: 415 MDDLVKNTLRMRPDRIIVGEVRGPEARTMFTAMNTGH 451
+ D + LR P I++ E+RG E M A+ +GH
Sbjct: 273 VTDEIVAALRNNPRWIMISELRGKETYEMIQAVLSGH 309
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 298479650
Number of Sequences: 2977
Number of extensions: 13271326
Number of successful extensions: 50249
Number of sequences better than 1.0e-10: 72
Number of HSP's better than 0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 49985
Number of HSP's gapped (non-prelim): 132
length of query: 814
length of database: 189,106,746
effective HSP length: 60
effective length of query: 754
effective length of database: 153,197,526
effective search space: 115510934604
effective search space used: 115510934604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)